Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene53966.t1 | XP_013467338.2 | 96.4 | 387 | 9 | 1 | 7 | 393 | 163 | 544 | 5.00E-201 | 710.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene53966.t1 | F4IUW3 | 65.7 | 385 | 126 | 2 | 7 | 391 | 170 | 548 | 5.9e-142 | 505.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene53966.t1 | A0A1S2Z443 | 86.0 | 385 | 49 | 1 | 7 | 391 | 164 | 543 | 4.4e-183 | 650.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050875 | MS.gene53966 | 0.809562 | 1.78E-50 | -1.69E-46 |
| MS.gene052169 | MS.gene53966 | 0.80902 | 2.33E-50 | -1.69E-46 |
| MS.gene054662 | MS.gene53966 | 0.839301 | 1.72E-57 | -1.69E-46 |
| MS.gene054941 | MS.gene53966 | 0.801947 | 7.08E-49 | -1.69E-46 |
| MS.gene056387 | MS.gene53966 | -0.81186 | 5.67E-51 | -1.69E-46 |
| MS.gene05652 | MS.gene53966 | 0.802608 | 5.18E-49 | -1.69E-46 |
| MS.gene057367 | MS.gene53966 | 0.807912 | 4.01E-50 | -1.69E-46 |
| MS.gene057669 | MS.gene53966 | 0.809501 | 1.83E-50 | -1.69E-46 |
| MS.gene05926 | MS.gene53966 | 0.825795 | 3.86E-54 | -1.69E-46 |
| MS.gene06093 | MS.gene53966 | 0.800708 | 1.27E-48 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 92 sgRNAs with CRISPR-Local
Find 179 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTGTTGCTGTTGGTCTCTA+TGG | 0.216394 | 5.4:+55498959 | MS.gene53966:CDS |
| AACTGAAAGTTGGGATTATT+TGG | 0.222355 | 5.4:-55499893 | None:intergenic |
| TCCAAATGCACATTTAAGTT+TGG | 0.242956 | 5.4:+55498585 | MS.gene53966:CDS |
| GCCATAGCTGTATACAGATT+TGG | 0.245174 | 5.4:-55499010 | None:intergenic |
| AATGAAAGACTAACCGAAAA+AGG | 0.259920 | 5.4:-55499978 | None:intergenic |
| TACCAAGTCAAGAGTACTTT+AGG | 0.272613 | 5.4:-55499049 | None:intergenic |
| AACAAGCAGATGGTAGAATA+AGG | 0.277870 | 5.4:-55500309 | None:intergenic |
| GGTCTTGTATCGTGTGGTTT+TGG | 0.290875 | 5.4:+55500778 | MS.gene53966:CDS |
| CGCATTCTAAGTTACATATC+AGG | 0.305862 | 5.4:+55498691 | MS.gene53966:CDS |
| CCATAGCTGTATACAGATTT+GGG | 0.309854 | 5.4:-55499009 | None:intergenic |
| CCAAATGCACATTTAAGTTT+GGG | 0.313973 | 5.4:+55498586 | MS.gene53966:CDS |
| CCCAAACTTAAATGTGCATT+TGG | 0.315352 | 5.4:-55498586 | None:intergenic |
| CAAGCTGCTTTCGGTACTTA+TGG | 0.330779 | 5.4:+55498162 | MS.gene53966:CDS |
| GGTTTGGTAATGTCATTAAT+CGG | 0.336891 | 5.4:+55500163 | MS.gene53966:intron |
| GACATTGGCCAAGCTGCTTT+CGG | 0.342012 | 5.4:+55498153 | MS.gene53966:CDS |
| TTCTTCCCACCGTTTGGCTC+CGG | 0.354053 | 5.4:+55498662 | MS.gene53966:CDS |
| CCATAGAGACCAACAGCAAC+AGG | 0.369630 | 5.4:-55498959 | None:intergenic |
| CGTAGTCCACACAGCAATCT+TGG | 0.374039 | 5.4:-55499472 | None:intergenic |
| CCACCTTCTTTGAGAGCATA+AGG | 0.374052 | 5.4:-55498024 | None:intergenic |
| CTTGCTGTTGCGTTATTGCT+TGG | 0.395145 | 5.4:+55498101 | MS.gene53966:CDS |
| CTCTATGGTTATTGCTTCGC+TGG | 0.395916 | 5.4:+55498974 | MS.gene53966:CDS |
| TGGCTATTCTTCCCACCGTT+TGG | 0.397127 | 5.4:+55498656 | MS.gene53966:CDS |
| ACCAAGTCAAGAGTACTTTA+GGG | 0.401734 | 5.4:-55499048 | None:intergenic |
| TCTTCCCACCGTTTGGCTCC+GGG | 0.404832 | 5.4:+55498663 | MS.gene53966:CDS |
| CAACAGCAAGCCAGTGTAGA+AGG | 0.416466 | 5.4:-55498088 | None:intergenic |
| AGTGGTACTGTGCTTGTTGT+GGG | 0.419401 | 5.4:+55498871 | MS.gene53966:CDS |
| TTCGGCCTCCCTTGATGCTT+AGG | 0.422978 | 5.4:-55500333 | None:intergenic |
| GTGGTTTCTACACTGCTTGT+TGG | 0.437821 | 5.4:+55499944 | MS.gene53966:CDS |
| TCAACATTCCCTGTTGCTGT+TGG | 0.442672 | 5.4:+55498950 | MS.gene53966:CDS |
| GTTGTGGGATACGCAATGTT+TGG | 0.447880 | 5.4:+55499396 | MS.gene53966:CDS |
| TCCTCTAGTGACAATGCTAC+TGG | 0.451627 | 5.4:-55499860 | None:intergenic |
| CACCTTCTTTGAGAGCATAA+GGG | 0.471215 | 5.4:-55498023 | None:intergenic |
| TATTGTTCCTTCTGTATGCA+TGG | 0.471552 | 5.4:-55498915 | None:intergenic |
| TAGTGGTACTGTGCTTGTTG+TGG | 0.473014 | 5.4:+55498870 | MS.gene53966:CDS |
| AGGCCGAATCAAGCGCTCTC+AGG | 0.479863 | 5.4:+55500348 | MS.gene53966:CDS |
| GATGGAGTAGAACTGAAAGT+TGG | 0.481778 | 5.4:-55499903 | None:intergenic |
| ATACCTGAGAGCGCTTGATT+CGG | 0.485124 | 5.4:-55500351 | None:intergenic |
| GTACTGTGCTTGTTGTGGGT+TGG | 0.486084 | 5.4:+55498875 | MS.gene53966:CDS |
| GTTTGGTAATGTCATTAATC+GGG | 0.487599 | 5.4:+55500164 | MS.gene53966:CDS |
| ATAAATGCTCTTTGTGGCGT+TGG | 0.494350 | 5.4:+55497988 | MS.gene53966:CDS |
| ATGGAGTAGAACTGAAAGTT+GGG | 0.494516 | 5.4:-55499902 | None:intergenic |
| AAAGCAGCTTGGCCAATGTC+AGG | 0.494911 | 5.4:-55498150 | None:intergenic |
| TCAGGATAGGTTTCAAGTCC+AGG | 0.496126 | 5.4:-55498132 | None:intergenic |
| TGCTTGTTTCCTAAGCATCA+AGG | 0.496356 | 5.4:+55500324 | MS.gene53966:CDS |
| GTCCCTTATGCTCTCAAAGA+AGG | 0.496708 | 5.4:+55498021 | MS.gene53966:CDS |
| TGAAAGTTGGGATTATTTGG+TGG | 0.515485 | 5.4:-55499890 | None:intergenic |
| ACAAGCAGATGGTAGAATAA+GGG | 0.516078 | 5.4:-55500308 | None:intergenic |
| TCCCTAAAGTACTCTTGACT+TGG | 0.516343 | 5.4:+55499047 | MS.gene53966:CDS |
| CCCAAATCTGTATACAGCTA+TGG | 0.523700 | 5.4:+55499009 | MS.gene53966:CDS |
| ATGCTCTCAAAGAAGGTGGA+TGG | 0.526983 | 5.4:+55498028 | MS.gene53966:CDS |
| ATTGTTCCTTCTGTATGCAT+GGG | 0.532915 | 5.4:-55498914 | None:intergenic |
| GCAGGCATAAATGCTCTTTG+TGG | 0.533917 | 5.4:+55497982 | MS.gene53966:intron |
| TGCTCTCAAAGAAGGTGGAT+GGG | 0.540284 | 5.4:+55498029 | MS.gene53966:CDS |
| TATTGCTTGGATAGTCAACC+TGG | 0.540934 | 5.4:+55498114 | MS.gene53966:CDS |
| CATAAGTACCGAAAGCAGCT+TGG | 0.541498 | 5.4:-55498161 | None:intergenic |
| AACTTAGAATGCGAAGGTCC+CGG | 0.543118 | 5.4:-55498681 | None:intergenic |
| AATGCACATTTAAGTTTGGG+TGG | 0.546077 | 5.4:+55498589 | MS.gene53966:CDS |
| CAAGATTGCTGTGTGGACTA+CGG | 0.555546 | 5.4:+55499473 | MS.gene53966:CDS |
| TGGATCATACTCAGCCATCT+CGG | 0.556651 | 5.4:+55500798 | MS.gene53966:CDS |
| TGAGAGCATAAGGGACTGAA+AGG | 0.558425 | 5.4:-55498014 | None:intergenic |
| GCGAAGGTCCCGGAGCCAAA+CGG | 0.560552 | 5.4:-55498671 | None:intergenic |
| GCTTGTTTCCTAAGCATCAA+GGG | 0.562510 | 5.4:+55500325 | MS.gene53966:CDS |
| GTGCTTGTTGTGGGTTGGAG+TGG | 0.564481 | 5.4:+55498880 | MS.gene53966:CDS |
| CTGCATCAGAACAGCACTAG+TGG | 0.570072 | 5.4:+55499925 | MS.gene53966:CDS |
| TGCGTATCCCACAACAGCTA+CGG | 0.577640 | 5.4:-55499388 | None:intergenic |
| CTTGAAACCTATCCTGACAT+TGG | 0.579886 | 5.4:+55498138 | MS.gene53966:CDS |
| ATAGTAGGTCTTGTATCGTG+TGG | 0.582289 | 5.4:+55500772 | MS.gene53966:CDS |
| GATACAGGTGATATTATACA+TGG | 0.584831 | 5.4:+55498295 | MS.gene53966:intron |
| GTTTGCAATCTTGAGCACAT+TGG | 0.592279 | 5.4:+55498636 | MS.gene53966:CDS |
| TTCCGCAATCATCTCCGAGA+TGG | 0.596162 | 5.4:-55500812 | None:intergenic |
| AGTGATTGCAACGGTTGTAG+TGG | 0.598466 | 5.4:+55498853 | MS.gene53966:CDS |
| AGCTTGGCCAATGTCAGGAT+AGG | 0.604020 | 5.4:-55498145 | None:intergenic |
| CCTTATGCTCTCAAAGAAGG+TGG | 0.608297 | 5.4:+55498024 | MS.gene53966:CDS |
| TAGTGCTGTTCTGATGCAGA+TGG | 0.611097 | 5.4:-55499921 | None:intergenic |
| AGTCCACACAGCAATCTTGG+AGG | 0.614103 | 5.4:-55499469 | None:intergenic |
| AAGGTCCCGGAGCCAAACGG+TGG | 0.617560 | 5.4:-55498668 | None:intergenic |
| TCCAGTAGCATTGTCACTAG+AGG | 0.618076 | 5.4:+55499859 | MS.gene53966:CDS |
| GATGTTCCCATGCATACAGA+AGG | 0.625864 | 5.4:+55498908 | MS.gene53966:CDS |
| TGTGTTACAGTGGTTATAGT+AGG | 0.628179 | 5.4:+55500757 | MS.gene53966:CDS |
| ATATGTAACTTAGAATGCGA+AGG | 0.630484 | 5.4:-55498687 | None:intergenic |
| ATGCTTAGGAAACAAGCAGA+TGG | 0.636166 | 5.4:-55500319 | None:intergenic |
| CATAGAGACCAACAGCAACA+GGG | 0.640777 | 5.4:-55498958 | None:intergenic |
| AGGTCCCGGAGCCAAACGGT+GGG | 0.641382 | 5.4:-55498667 | None:intergenic |
| AGTTAGACTCAAAGCATATG+TGG | 0.647151 | 5.4:-55499837 | None:intergenic |
| AGCCATCTCGGAGATGATTG+CGG | 0.648440 | 5.4:+55500810 | MS.gene53966:CDS |
| AGCTTGCGGAGTGATTGCAA+CGG | 0.650712 | 5.4:+55498844 | MS.gene53966:intron |
| GGTACTACTATGTGTTACAG+TGG | 0.680801 | 5.4:+55500747 | MS.gene53966:intron |
| TTGGAGGCTACTAATCCTCG+AGG | 0.692869 | 5.4:-55499453 | None:intergenic |
| TGTTTCCTAAGCATCAAGGG+AGG | 0.707201 | 5.4:+55500328 | MS.gene53966:CDS |
| TAGCCTCCAAGATTGCTGTG+TGG | 0.737491 | 5.4:+55499466 | MS.gene53966:CDS |
| TATACTCTTAACATGCCTCG+AGG | 0.751987 | 5.4:+55499438 | MS.gene53966:CDS |
| CAGAAGGAACAATAACACTG+AGG | 0.765802 | 5.4:+55498924 | MS.gene53966:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTATGTTATTTCATATAA+CGG | + | chr5.4:55500412-55500431 | MS.gene53966:intron | 10.0% |
| !! | AATAACTATAAAACAAGAAA+TGG | - | chr5.4:55500677-55500696 | None:intergenic | 15.0% |
| !! | AATCATATAAATGATATACA+TGG | - | chr5.4:55500259-55500278 | None:intergenic | 15.0% |
| !! | AATTAATTTATCTTGAATTG+GGG | + | chr5.4:55498450-55498469 | MS.gene53966:intron | 15.0% |
| !! | CATACAAATGAAAAATAAAA+AGG | - | chr5.4:55498276-55498295 | None:intergenic | 15.0% |
| !! | GAATTAATTTATCTTGAATT+GGG | + | chr5.4:55498449-55498468 | MS.gene53966:intron | 15.0% |
| !! | TGAATTAATTTATCTTGAAT+TGG | + | chr5.4:55498448-55498467 | MS.gene53966:intron | 15.0% |
| !! | TTCAAGATAAATTAATTCAT+AGG | - | chr5.4:55498447-55498466 | None:intergenic | 15.0% |
| !!! | ATAAAAATCTATTATTTTGC+AGG | + | chr5.4:55498510-55498529 | MS.gene53966:intron | 15.0% |
| !!! | ATTAATGTTTTATTCATGTT+TGG | + | chr5.4:55497951-55497970 | MS.gene53966:intron | 15.0% |
| !!! | ATTTTATATAGCAGTTATAA+AGG | - | chr5.4:55499631-55499650 | None:intergenic | 15.0% |
| !!! | TGCAAAATAATAGATTTTTA+TGG | - | chr5.4:55498511-55498530 | None:intergenic | 15.0% |
| !!! | TTTAGTTGATATATCATATA+TGG | - | chr5.4:55499133-55499152 | None:intergenic | 15.0% |
| !!! | TTTATGTTATTTCATATAAC+GGG | + | chr5.4:55500413-55500432 | MS.gene53966:intron | 15.0% |
| !! | AAGAAATGGTTCAAAATATT+TGG | - | chr5.4:55500663-55500682 | None:intergenic | 20.0% |
| !! | CAAATGAAAAATAAAAAGGA+AGG | - | chr5.4:55498272-55498291 | None:intergenic | 20.0% |
| !! | TAAATTAAATTCAACCTTGT+TGG | + | chr5.4:55500278-55500297 | MS.gene53966:intron | 20.0% |
| !! | TATAAAGGATATTTGGTAAA+TGG | - | chr5.4:55499616-55499635 | None:intergenic | 20.0% |
| !!! | ATTTTTCATTTGTATGATAC+AGG | + | chr5.4:55498280-55498299 | MS.gene53966:intron | 20.0% |
| !!! | TGATTTTATTGTTGCATTTT+TGG | + | chr5.4:55500126-55500145 | MS.gene53966:intron | 20.0% |
| !!! | TGGTTTTAAATTAACTTTGA+CGG | - | chr5.4:55498232-55498251 | None:intergenic | 20.0% |
| ! | AAAACAGTAAATTTACGACT+TGG | - | chr5.4:55500396-55500415 | None:intergenic | 25.0% |
| ! | AAAATTAGAGCTAAGAGATA+AGG | - | chr5.4:55499686-55499705 | None:intergenic | 25.0% |
| ! | AGATTCAAAAAAAGAAATCG+TGG | - | chr5.4:55499312-55499331 | None:intergenic | 25.0% |
| ! | AGGTAAGACATAAGAAATAA+TGG | - | chr5.4:55498252-55498271 | None:intergenic | 25.0% |
| ! | CAGACAAAATATTAAAGAGA+CGG | - | chr5.4:55500015-55500034 | None:intergenic | 25.0% |
| ! | CTTGTAACAAAAATATACGA+AGG | - | chr5.4:55500639-55500658 | None:intergenic | 25.0% |
| ! | GAAAAACAAGATAGTTAGAT+TGG | - | chr5.4:55500710-55500729 | None:intergenic | 25.0% |
| ! | GAAAATGAGAACATGTAAAA+AGG | - | chr5.4:55498210-55498229 | None:intergenic | 25.0% |
| ! | TAGCAGTTATAAAGGATATT+TGG | - | chr5.4:55499623-55499642 | None:intergenic | 25.0% |
| ! | TCTTATTAAACTTTGCTACT+TGG | + | chr5.4:55499536-55499555 | MS.gene53966:intron | 25.0% |
| ! | TGCTATGACAAATAACAATA+AGG | - | chr5.4:55498342-55498361 | None:intergenic | 25.0% |
| ! | TTGACAATGTGTTTATAAGT+GGG | + | chr5.4:55499237-55499256 | MS.gene53966:intron | 25.0% |
| !!! | TAATTAAGAGAGTATCTATC+TGG | + | chr5.4:55498376-55498395 | MS.gene53966:intron | 25.0% |
| !!! | TTTCCTTTTCATATTTCTAC+AGG | + | chr5.4:55500726-55500745 | MS.gene53966:intron | 25.0% |
| !!! | TTTTTGGATTATGTTTTTGC+AGG | + | chr5.4:55500142-55500161 | MS.gene53966:intron | 25.0% |
| AAACAAGATAGTTAGATTGG+AGG | - | chr5.4:55500707-55500726 | None:intergenic | 30.0% | |
| AACTGAAAGTTGGGATTATT+TGG | - | chr5.4:55499896-55499915 | None:intergenic | 30.0% | |
| AATGAAAGACTAACCGAAAA+AGG | - | chr5.4:55499981-55500000 | None:intergenic | 30.0% | |
| ATATGTAACTTAGAATGCGA+AGG | - | chr5.4:55498690-55498709 | None:intergenic | 30.0% | |
| ATGAAAGACTAACCGAAAAA+GGG | - | chr5.4:55499980-55499999 | None:intergenic | 30.0% | |
| CTACAATTTCAAGATCAAAG+TGG | - | chr5.4:55499108-55499127 | None:intergenic | 30.0% | |
| CTGAATCAAACAGTTAATGA+AGG | - | chr5.4:55500219-55500238 | None:intergenic | 30.0% | |
| CTTGACAATGTGTTTATAAG+TGG | + | chr5.4:55499236-55499255 | MS.gene53966:intron | 30.0% | |
| GATACAGGTGATATTATACA+TGG | + | chr5.4:55498295-55498314 | MS.gene53966:intron | 30.0% | |
| GTACCTGTAGAAATATGAAA+AGG | - | chr5.4:55500732-55500751 | None:intergenic | 30.0% | |
| TATCGGGTTTAAGTAAACAA+AGG | + | chr5.4:55500513-55500532 | MS.gene53966:intron | 30.0% | |
| TCAAAAAAAGAAATCGTGGT+TGG | - | chr5.4:55499308-55499327 | None:intergenic | 30.0% | |
| TCATAGGTAAATCTAGTACT+TGG | - | chr5.4:55498431-55498450 | None:intergenic | 30.0% | |
| TGACAATGTGTTTATAAGTG+GGG | + | chr5.4:55499238-55499257 | MS.gene53966:intron | 30.0% | |
| ! | CCAAATGCACATTTAAGTTT+GGG | + | chr5.4:55498586-55498605 | MS.gene53966:CDS | 30.0% |
| ! | TCCAAATGCACATTTAAGTT+TGG | + | chr5.4:55498585-55498604 | MS.gene53966:CDS | 30.0% |
| ! | TTAGAGGGTACATAAATTAG+AGG | - | chr5.4:55499785-55499804 | None:intergenic | 30.0% |
| ! | TTTTTCATATTCGAGTCGTT+TGG | - | chr5.4:55500449-55500468 | None:intergenic | 30.0% |
| !! | ACATCCATTTTTCATCTTAG+AGG | - | chr5.4:55499801-55499820 | None:intergenic | 30.0% |
| !! | CATCCATTTTTCATCTTAGA+GGG | - | chr5.4:55499800-55499819 | None:intergenic | 30.0% |
| !! | GGTTTGGTAATGTCATTAAT+CGG | + | chr5.4:55500163-55500182 | MS.gene53966:intron | 30.0% |
| !! | GTTTGGTAATGTCATTAATC+GGG | + | chr5.4:55500164-55500183 | MS.gene53966:CDS | 30.0% |
| !!! | TATCATGTGTTTTGTTTTGC+AGG | + | chr5.4:55499582-55499601 | MS.gene53966:intron | 30.0% |
| AACAAGCAGATGGTAGAATA+AGG | - | chr5.4:55500312-55500331 | None:intergenic | 35.0% | |
| ACAAGCAGATGGTAGAATAA+GGG | - | chr5.4:55500311-55500330 | None:intergenic | 35.0% | |
| AGTTAGACTCAAAGCATATG+TGG | - | chr5.4:55499840-55499859 | None:intergenic | 35.0% | |
| ATGGAGTAGAACTGAAAGTT+GGG | - | chr5.4:55499905-55499924 | None:intergenic | 35.0% | |
| ATTAGAGCTAAGAGATAAGG+TGG | - | chr5.4:55499683-55499702 | None:intergenic | 35.0% | |
| ATTGTTCCTTCTGTATGCAT+GGG | - | chr5.4:55498917-55498936 | None:intergenic | 35.0% | |
| CCATAGCTGTATACAGATTT+GGG | - | chr5.4:55499012-55499031 | None:intergenic | 35.0% | |
| CCCAAACTTAAATGTGCATT+TGG | - | chr5.4:55498589-55498608 | None:intergenic | 35.0% | |
| CGCATTCTAAGTTACATATC+AGG | + | chr5.4:55498691-55498710 | MS.gene53966:CDS | 35.0% | |
| GACAATGTGTTTATAAGTGG+GGG | + | chr5.4:55499239-55499258 | MS.gene53966:intron | 35.0% | |
| GTCTGTTGATACATGGTTAT+CGG | + | chr5.4:55500496-55500515 | MS.gene53966:intron | 35.0% | |
| TATTGTTCCTTCTGTATGCA+TGG | - | chr5.4:55498918-55498937 | None:intergenic | 35.0% | |
| TCTGTTGATACATGGTTATC+GGG | + | chr5.4:55500497-55500516 | MS.gene53966:intron | 35.0% | |
| TGAAAGTTGGGATTATTTGG+TGG | - | chr5.4:55499893-55499912 | None:intergenic | 35.0% | |
| TGTGTTACAGTGGTTATAGT+AGG | + | chr5.4:55500757-55500776 | MS.gene53966:CDS | 35.0% | |
| ! | AATGCACATTTAAGTTTGGG+TGG | + | chr5.4:55498589-55498608 | MS.gene53966:CDS | 35.0% |
| ! | AGCTTTAGTCTGTTGATACA+TGG | + | chr5.4:55500489-55500508 | MS.gene53966:intron | 35.0% |
| ! | TATTTTACCGTAGCTGTTGT+GGG | + | chr5.4:55499381-55499400 | MS.gene53966:CDS | 35.0% |
| ! | TCAGTATTTTCCTTCTACAC+TGG | + | chr5.4:55498078-55498097 | MS.gene53966:CDS | 35.0% |
| !! | ACCAAGTCAAGAGTACTTTA+GGG | - | chr5.4:55499051-55499070 | None:intergenic | 35.0% |
| !! | GGATTATGTTTTTGCAGGTT+TGG | + | chr5.4:55500147-55500166 | MS.gene53966:intron | 35.0% |
| !! | GTACCCTCTAAGATGAAAAA+TGG | + | chr5.4:55499794-55499813 | MS.gene53966:intron | 35.0% |
| !! | TACCAAGTCAAGAGTACTTT+AGG | - | chr5.4:55499052-55499071 | None:intergenic | 35.0% |
| AAGCTATCTTCTATCCGATG+TGG | - | chr5.4:55499219-55499238 | None:intergenic | 40.0% | |
| AGCTATCTTCTATCCGATGT+GGG | - | chr5.4:55499218-55499237 | None:intergenic | 40.0% | |
| ATAAATGCTCTTTGTGGCGT+TGG | + | chr5.4:55497988-55498007 | MS.gene53966:CDS | 40.0% | |
| ATGCTTAGGAAACAAGCAGA+TGG | - | chr5.4:55500322-55500341 | None:intergenic | 40.0% | |
| CAGAAGGAACAATAACACTG+AGG | + | chr5.4:55498924-55498943 | MS.gene53966:CDS | 40.0% | |
| CCCAAATCTGTATACAGCTA+TGG | + | chr5.4:55499009-55499028 | MS.gene53966:CDS | 40.0% | |
| CTTGAAACCTATCCTGACAT+TGG | + | chr5.4:55498138-55498157 | MS.gene53966:CDS | 40.0% | |
| GATGGAGTAGAACTGAAAGT+TGG | - | chr5.4:55499906-55499925 | None:intergenic | 40.0% | |
| GCCATAGCTGTATACAGATT+TGG | - | chr5.4:55499013-55499032 | None:intergenic | 40.0% | |
| GCTTGTTTCCTAAGCATCAA+GGG | + | chr5.4:55500325-55500344 | MS.gene53966:CDS | 40.0% | |
| GGTACTACTATGTGTTACAG+TGG | + | chr5.4:55500747-55500766 | MS.gene53966:intron | 40.0% | |
| GTTTGCAATCTTGAGCACAT+TGG | + | chr5.4:55498636-55498655 | MS.gene53966:CDS | 40.0% | |
| TATACTCTTAACATGCCTCG+AGG | + | chr5.4:55499438-55499457 | MS.gene53966:CDS | 40.0% | |
| TATTGCTTGGATAGTCAACC+TGG | + | chr5.4:55498114-55498133 | MS.gene53966:CDS | 40.0% | |
| TGCTTGTTTCCTAAGCATCA+AGG | + | chr5.4:55500324-55500343 | MS.gene53966:CDS | 40.0% | |
| ! | ATAGTAGGTCTTGTATCGTG+TGG | + | chr5.4:55500772-55500791 | MS.gene53966:CDS | 40.0% |
| ! | CACCTTCTTTGAGAGCATAA+GGG | - | chr5.4:55498026-55498045 | None:intergenic | 40.0% |
| ! | GGTCTTTCAGTTCCCTTTTT+CGG | + | chr5.4:55499965-55499984 | MS.gene53966:CDS | 40.0% |
| ! | GTATTTTACCGTAGCTGTTG+TGG | + | chr5.4:55499380-55499399 | MS.gene53966:CDS | 40.0% |
| ! | TCATGTTTGGATTTTGCTGC+AGG | + | chr5.4:55497964-55497983 | MS.gene53966:intron | 40.0% |
| ! | TCCCTAAAGTACTCTTGACT+TGG | + | chr5.4:55499047-55499066 | MS.gene53966:CDS | 40.0% |
| !! | ACTTCACAAGCCAGTTTTGT+GGG | + | chr5.4:55499270-55499289 | MS.gene53966:intron | 40.0% |
| !! | AGTTTTGTGGGGTTGTGTTA+GGG | + | chr5.4:55499282-55499301 | MS.gene53966:intron | 40.0% |
| !! | TCTTCTGTTTTTCCAGCTTG+CGG | + | chr5.4:55498830-55498849 | MS.gene53966:intron | 40.0% |
| !!! | CATGTGTTTTGTTTTGCAGG+TGG | + | chr5.4:55499585-55499604 | MS.gene53966:intron | 40.0% |
| AACTTAGAATGCGAAGGTCC+CGG | - | chr5.4:55498684-55498703 | None:intergenic | 45.0% | |
| ACAGACACTCCTCAGATTAG+GGG | + | chr5.4:55499164-55499183 | MS.gene53966:intron | 45.0% | |
| AGTGATTGCAACGGTTGTAG+TGG | + | chr5.4:55498853-55498872 | MS.gene53966:CDS | 45.0% | |
| ATAAGGGACTGCATCCAACA+AGG | - | chr5.4:55500295-55500314 | None:intergenic | 45.0% | |
| ATGCTCTCAAAGAAGGTGGA+TGG | + | chr5.4:55498028-55498047 | MS.gene53966:CDS | 45.0% | |
| CACAGACACTCCTCAGATTA+GGG | + | chr5.4:55499163-55499182 | MS.gene53966:intron | 45.0% | |
| CACTGTTAAGAGTCCCACAT+CGG | + | chr5.4:55499202-55499221 | MS.gene53966:intron | 45.0% | |
| CATAGAGACCAACAGCAACA+GGG | - | chr5.4:55498961-55498980 | None:intergenic | 45.0% | |
| CCTTATGCTCTCAAAGAAGG+TGG | + | chr5.4:55498024-55498043 | MS.gene53966:CDS | 45.0% | |
| CTAACACAACCCCACAAAAC+TGG | - | chr5.4:55499283-55499302 | None:intergenic | 45.0% | |
| CTCTATGGTTATTGCTTCGC+TGG | + | chr5.4:55498974-55498993 | MS.gene53966:CDS | 45.0% | |
| CTCTTAACAGTGTCCGATAC+CGG | - | chr5.4:55499194-55499213 | None:intergenic | 45.0% | |
| GATGTTCCCATGCATACAGA+AGG | + | chr5.4:55498908-55498927 | MS.gene53966:CDS | 45.0% | |
| GCAGGCATAAATGCTCTTTG+TGG | + | chr5.4:55497982-55498001 | MS.gene53966:intron | 45.0% | |
| GTCCCTTATGCTCTCAAAGA+AGG | + | chr5.4:55498021-55498040 | MS.gene53966:CDS | 45.0% | |
| GTGGTTTCTACACTGCTTGT+TGG | + | chr5.4:55499944-55499963 | MS.gene53966:CDS | 45.0% | |
| GTTGTGGGATACGCAATGTT+TGG | + | chr5.4:55499396-55499415 | MS.gene53966:CDS | 45.0% | |
| TCAACATTCCCTGTTGCTGT+TGG | + | chr5.4:55498950-55498969 | MS.gene53966:CDS | 45.0% | |
| TCCAGTAGCATTGTCACTAG+AGG | + | chr5.4:55499859-55499878 | MS.gene53966:CDS | 45.0% | |
| TCCTCTAGTGACAATGCTAC+TGG | - | chr5.4:55499863-55499882 | None:intergenic | 45.0% | |
| TCTTAACAGTGTCCGATACC+GGG | - | chr5.4:55499193-55499212 | None:intergenic | 45.0% | |
| TGCTCTCAAAGAAGGTGGAT+GGG | + | chr5.4:55498029-55498048 | MS.gene53966:CDS | 45.0% | |
| TGGATCATACTCAGCCATCT+CGG | + | chr5.4:55500798-55500817 | MS.gene53966:CDS | 45.0% | |
| TGTTTCCTAAGCATCAAGGG+AGG | + | chr5.4:55500328-55500347 | MS.gene53966:CDS | 45.0% | |
| ! | CAAGATTGCTGTGTGGACTA+CGG | + | chr5.4:55499473-55499492 | MS.gene53966:CDS | 45.0% |
| ! | CAAGCTGCTTTCGGTACTTA+TGG | + | chr5.4:55498162-55498181 | MS.gene53966:CDS | 45.0% |
| ! | CACTTCACAAGCCAGTTTTG+TGG | + | chr5.4:55499269-55499288 | MS.gene53966:intron | 45.0% |
| ! | CCACCTTCTTTGAGAGCATA+AGG | - | chr5.4:55498027-55498046 | None:intergenic | 45.0% |
| ! | TAGTGCTGTTCTGATGCAGA+TGG | - | chr5.4:55499924-55499943 | None:intergenic | 45.0% |
| ! | TAGTGGTACTGTGCTTGTTG+TGG | + | chr5.4:55498870-55498889 | MS.gene53966:CDS | 45.0% |
| ! | TCAGGATAGGTTTCAAGTCC+AGG | - | chr5.4:55498135-55498154 | None:intergenic | 45.0% |
| ! | TGAGAGCATAAGGGACTGAA+AGG | - | chr5.4:55498017-55498036 | None:intergenic | 45.0% |
| !! | AGGAGTGTCTGTGCTTCATA+GGG | - | chr5.4:55499156-55499175 | None:intergenic | 45.0% |
| !! | AGTGGTACTGTGCTTGTTGT+GGG | + | chr5.4:55498871-55498890 | MS.gene53966:CDS | 45.0% |
| !! | ATACCTGAGAGCGCTTGATT+CGG | - | chr5.4:55500354-55500373 | None:intergenic | 45.0% |
| !! | CAAAACTGGCTTGTGAAGTG+AGG | - | chr5.4:55499269-55499288 | None:intergenic | 45.0% |
| !! | CAGTTTTGTGGGGTTGTGTT+AGG | + | chr5.4:55499281-55499300 | MS.gene53966:intron | 45.0% |
| !! | CATAAGTACCGAAAGCAGCT+TGG | - | chr5.4:55498164-55498183 | None:intergenic | 45.0% |
| !! | CTTCACAAGCCAGTTTTGTG+GGG | + | chr5.4:55499271-55499290 | MS.gene53966:intron | 45.0% |
| !! | CTTGCTGTTGCGTTATTGCT+TGG | + | chr5.4:55498101-55498120 | MS.gene53966:CDS | 45.0% |
| !! | GGTCTTGTATCGTGTGGTTT+TGG | + | chr5.4:55500778-55500797 | MS.gene53966:CDS | 45.0% |
| AAAGCAGCTTGGCCAATGTC+AGG | - | chr5.4:55498153-55498172 | None:intergenic | 50.0% | |
| AGCCATCTCGGAGATGATTG+CGG | + | chr5.4:55500810-55500829 | MS.gene53966:CDS | 50.0% | |
| AGCTTGCGGAGTGATTGCAA+CGG | + | chr5.4:55498844-55498863 | MS.gene53966:intron | 50.0% | |
| AGCTTGGCCAATGTCAGGAT+AGG | - | chr5.4:55498148-55498167 | None:intergenic | 50.0% | |
| AGTCCACACAGCAATCTTGG+AGG | - | chr5.4:55499472-55499491 | None:intergenic | 50.0% | |
| CAACAGCAAGCCAGTGTAGA+AGG | - | chr5.4:55498091-55498110 | None:intergenic | 50.0% | |
| CCATAGAGACCAACAGCAAC+AGG | - | chr5.4:55498962-55498981 | None:intergenic | 50.0% | |
| CGTAGTCCACACAGCAATCT+TGG | - | chr5.4:55499475-55499494 | None:intergenic | 50.0% | |
| CTGCATCAGAACAGCACTAG+TGG | + | chr5.4:55499925-55499944 | MS.gene53966:CDS | 50.0% | |
| GCACAGACACTCCTCAGATT+AGG | + | chr5.4:55499162-55499181 | MS.gene53966:intron | 50.0% | |
| TAGCCTCCAAGATTGCTGTG+TGG | + | chr5.4:55499466-55499485 | MS.gene53966:CDS | 50.0% | |
| TGCGTATCCCACAACAGCTA+CGG | - | chr5.4:55499391-55499410 | None:intergenic | 50.0% | |
| TGGCTATTCTTCCCACCGTT+TGG | + | chr5.4:55498656-55498675 | MS.gene53966:CDS | 50.0% | |
| TTCCGCAATCATCTCCGAGA+TGG | - | chr5.4:55500815-55500834 | None:intergenic | 50.0% | |
| TTGGAGGCTACTAATCCTCG+AGG | - | chr5.4:55499456-55499475 | None:intergenic | 50.0% | |
| ! | CCTGTTGCTGTTGGTCTCTA+TGG | + | chr5.4:55498959-55498978 | MS.gene53966:CDS | 50.0% |
| ! | GACATTGGCCAAGCTGCTTT+CGG | + | chr5.4:55498153-55498172 | MS.gene53966:CDS | 50.0% |
| !! | GAGGAGTGTCTGTGCTTCAT+AGG | - | chr5.4:55499157-55499176 | None:intergenic | 50.0% |
| !! | GTACTGTGCTTGTTGTGGGT+TGG | + | chr5.4:55498875-55498894 | MS.gene53966:CDS | 50.0% |
| GTTGCAATCACTCCGCAAGC+TGG | - | chr5.4:55498845-55498864 | None:intergenic | 55.0% | |
| TTCGGCCTCCCTTGATGCTT+AGG | - | chr5.4:55500336-55500355 | None:intergenic | 55.0% | |
| ! | TTCTTCCCACCGTTTGGCTC+CGG | + | chr5.4:55498662-55498681 | MS.gene53966:CDS | 55.0% |
| !! | GATTAGGGGTGTCCCGGTAT+CGG | + | chr5.4:55499178-55499197 | MS.gene53966:intron | 55.0% |
| !! | GTGCTTGTTGTGGGTTGGAG+TGG | + | chr5.4:55498880-55498899 | MS.gene53966:CDS | 55.0% |
| !! | TCCTCAGATTAGGGGTGTCC+CGG | + | chr5.4:55499172-55499191 | MS.gene53966:intron | 55.0% |
| ACCGGGACACCCCTAATCTG+AGG | - | chr5.4:55499176-55499195 | None:intergenic | 60.0% | |
| AGGCCGAATCAAGCGCTCTC+AGG | + | chr5.4:55500348-55500367 | MS.gene53966:CDS | 60.0% | |
| ! | TCTTCCCACCGTTTGGCTCC+GGG | + | chr5.4:55498663-55498682 | MS.gene53966:CDS | 60.0% |
| AAGGTCCCGGAGCCAAACGG+TGG | - | chr5.4:55498671-55498690 | None:intergenic | 65.0% | |
| AGGTCCCGGAGCCAAACGGT+GGG | - | chr5.4:55498670-55498689 | None:intergenic | 65.0% | |
| GCGAAGGTCCCGGAGCCAAA+CGG | - | chr5.4:55498674-55498693 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.4 | gene | 55497931 | 55500846 | 55497931 | ID=MS.gene53966 |
| chr5.4 | mRNA | 55497931 | 55500846 | 55497931 | ID=MS.gene53966.t1;Parent=MS.gene53966 |
| chr5.4 | exon | 55497931 | 55497948 | 55497931 | ID=MS.gene53966.t1.exon1;Parent=MS.gene53966.t1 |
| chr5.4 | CDS | 55497931 | 55497948 | 55497931 | ID=cds.MS.gene53966.t1;Parent=MS.gene53966.t1 |
| chr5.4 | exon | 55497986 | 55498200 | 55497986 | ID=MS.gene53966.t1.exon2;Parent=MS.gene53966.t1 |
| chr5.4 | CDS | 55497986 | 55498200 | 55497986 | ID=cds.MS.gene53966.t1;Parent=MS.gene53966.t1 |
| chr5.4 | exon | 55498302 | 55498325 | 55498302 | ID=MS.gene53966.t1.exon3;Parent=MS.gene53966.t1 |
| chr5.4 | CDS | 55498302 | 55498325 | 55498302 | ID=cds.MS.gene53966.t1;Parent=MS.gene53966.t1 |
| chr5.4 | exon | 55498532 | 55498712 | 55498532 | ID=MS.gene53966.t1.exon4;Parent=MS.gene53966.t1 |
| chr5.4 | CDS | 55498532 | 55498712 | 55498532 | ID=cds.MS.gene53966.t1;Parent=MS.gene53966.t1 |
| chr5.4 | exon | 55498846 | 55499068 | 55498846 | ID=MS.gene53966.t1.exon5;Parent=MS.gene53966.t1 |
| chr5.4 | CDS | 55498846 | 55499068 | 55498846 | ID=cds.MS.gene53966.t1;Parent=MS.gene53966.t1 |
| chr5.4 | exon | 55499359 | 55499494 | 55499359 | ID=MS.gene53966.t1.exon6;Parent=MS.gene53966.t1 |
| chr5.4 | CDS | 55499359 | 55499494 | 55499359 | ID=cds.MS.gene53966.t1;Parent=MS.gene53966.t1 |
| chr5.4 | exon | 55499806 | 55499986 | 55499806 | ID=MS.gene53966.t1.exon7;Parent=MS.gene53966.t1 |
| chr5.4 | CDS | 55499806 | 55499986 | 55499806 | ID=cds.MS.gene53966.t1;Parent=MS.gene53966.t1 |
| chr5.4 | exon | 55500164 | 55500207 | 55500164 | ID=MS.gene53966.t1.exon8;Parent=MS.gene53966.t1 |
| chr5.4 | CDS | 55500164 | 55500207 | 55500164 | ID=cds.MS.gene53966.t1;Parent=MS.gene53966.t1 |
| chr5.4 | exon | 55500307 | 55500369 | 55500307 | ID=MS.gene53966.t1.exon9;Parent=MS.gene53966.t1 |
| chr5.4 | CDS | 55500307 | 55500369 | 55500307 | ID=cds.MS.gene53966.t1;Parent=MS.gene53966.t1 |
| chr5.4 | exon | 55500748 | 55500846 | 55500748 | ID=MS.gene53966.t1.exon10;Parent=MS.gene53966.t1 |
| chr5.4 | CDS | 55500748 | 55500846 | 55500748 | ID=cds.MS.gene53966.t1;Parent=MS.gene53966.t1 |
| Gene Sequence |
| Protein sequence |
