Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene54153.t1 | XP_024640995.1 | 95.5 | 426 | 19 | 0 | 1 | 426 | 1 | 426 | 5.30E-241 | 843.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene54153.t1 | Q9FH50 | 59.6 | 413 | 141 | 3 | 15 | 426 | 15 | 402 | 2.7e-140 | 500.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene54153.t1 | A0A396HTC3 | 95.5 | 426 | 19 | 0 | 1 | 426 | 1 | 426 | 3.8e-241 | 843.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene80300 | MS.gene54153 | PPI |
| MS.gene59283 | MS.gene54153 | PPI |
| MS.gene54153 | MS.gene060083 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene54153.t1 | MTR_5g072520 | 95.946 | 296 | 12 | 0 | 130 | 425 | 1 | 296 | 0.0 | 608 |
| MS.gene54153.t1 | MTR_2g088390 | 45.628 | 366 | 175 | 7 | 53 | 417 | 95 | 437 | 1.72e-103 | 315 |
| MS.gene54153.t1 | MTR_2g067610 | 45.882 | 340 | 162 | 4 | 78 | 417 | 2 | 319 | 7.30e-102 | 306 |
| MS.gene54153.t1 | MTR_6g059930 | 43.235 | 340 | 173 | 3 | 87 | 426 | 100 | 419 | 2.27e-97 | 298 |
| MS.gene54153.t1 | MTR_6g059930 | 43.235 | 340 | 173 | 3 | 87 | 426 | 132 | 451 | 9.10e-97 | 297 |
| MS.gene54153.t1 | MTR_2g088750 | 32.267 | 344 | 181 | 6 | 75 | 416 | 34 | 327 | 9.53e-53 | 180 |
| MS.gene54153.t1 | MTR_1g054885 | 55.844 | 77 | 32 | 2 | 346 | 421 | 2 | 77 | 7.28e-18 | 78.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene54153.t1 | AT5G61930 | 59.564 | 413 | 141 | 3 | 15 | 426 | 15 | 402 | 3.91e-176 | 498 |
| MS.gene54153.t1 | AT5G61930 | 59.564 | 413 | 141 | 3 | 15 | 426 | 15 | 402 | 3.91e-176 | 498 |
| MS.gene54153.t1 | AT1G64810 | 39.791 | 382 | 210 | 6 | 45 | 426 | 75 | 436 | 1.85e-96 | 296 |
| MS.gene54153.t1 | AT1G64810 | 39.791 | 382 | 210 | 6 | 45 | 426 | 99 | 460 | 4.72e-96 | 296 |
| MS.gene54153.t1 | AT5G57930 | 42.192 | 365 | 188 | 6 | 53 | 417 | 92 | 433 | 6.15e-94 | 290 |
| MS.gene54153.t1 | AT5G57930 | 42.192 | 365 | 188 | 6 | 53 | 417 | 89 | 430 | 7.29e-94 | 290 |
| MS.gene54153.t1 | AT3G21740 | 31.562 | 320 | 162 | 7 | 95 | 411 | 55 | 320 | 1.77e-44 | 158 |
| MS.gene54153.t1 | AT3G21740 | 26.708 | 161 | 117 | 1 | 246 | 405 | 13 | 173 | 3.39e-13 | 70.9 |
Find 121 sgRNAs with CRISPR-Local
Find 181 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCATACAAATGAAAGCATTT+TGG | 0.148537 | 5.4:-61604291 | None:intergenic |
| TCAACATGCCAGACAAAATT+TGG | 0.212731 | 5.4:-61604864 | None:intergenic |
| GCCAGAGGGTTTCTACTTTC+CGG | 0.228283 | 5.4:+61603439 | MS.gene54153:CDS |
| AAGATGAAAGGAACAAATTA+AGG | 0.231802 | 5.4:+61604628 | MS.gene54153:CDS |
| AACAATCTCAAGAGATATTA+TGG | 0.264261 | 5.4:+61604912 | MS.gene54153:CDS |
| AGGTCAACTTCATCTCGTTC+TGG | 0.313030 | 5.4:-61605026 | None:intergenic |
| TAGACTTTGGACCTTCTCTA+AGG | 0.315242 | 5.4:-61604568 | None:intergenic |
| TGGATATTGTCCTGAGGTTC+AGG | 0.318362 | 5.4:+61604737 | MS.gene54153:CDS |
| GTGGAACTCTGTGTGTATGC+TGG | 0.326170 | 5.4:+61604951 | MS.gene54153:CDS |
| GGGTTGGGTACGTCGGAGTA+TGG | 0.330870 | 5.4:-61603241 | None:intergenic |
| ATATGGGACGAATCAGTTAA+AGG | 0.333180 | 5.4:-61604534 | None:intergenic |
| CTTGCAATCAAAACTTTCAT+TGG | 0.334453 | 5.4:-61603301 | None:intergenic |
| GGCGCAGCCGTGTAGAGTTC+TGG | 0.336878 | 5.4:+61603351 | MS.gene54153:CDS |
| TGGATGTGAGGCGGTGGGAG+AGG | 0.352774 | 5.4:-61603162 | None:intergenic |
| GCAACTCGTTCGAGTTATTC+CGG | 0.363019 | 5.4:+61603468 | MS.gene54153:CDS |
| AGAGGGTGGATGTGAGGCGG+TGG | 0.374028 | 5.4:-61603168 | None:intergenic |
| CTTCCTTCAATGCAATATAC+AGG | 0.382313 | 5.4:-61604441 | None:intergenic |
| TGGAACTCTGTGTGTATGCT+GGG | 0.382701 | 5.4:+61604952 | MS.gene54153:CDS |
| GCATACTCGCAGCGCAAAAC+CGG | 0.389839 | 5.4:-61603487 | None:intergenic |
| GCATTCCGTAGCCAACTCTT+TGG | 0.397826 | 5.4:-61604222 | None:intergenic |
| GGAGAACAAAATAAGTCATA+TGG | 0.409590 | 5.4:+61604593 | MS.gene54153:CDS |
| GGTCAACTTCATCTCGTTCT+GGG | 0.412824 | 5.4:-61605025 | None:intergenic |
| TCATGGTTTGAGATGATATC+AGG | 0.413415 | 5.4:+61604675 | MS.gene54153:CDS |
| AAACCTGTATATTGCATTGA+AGG | 0.421348 | 5.4:+61604438 | MS.gene54153:CDS |
| TACGGAATGCAACTCATGTT+TGG | 0.424247 | 5.4:+61604235 | MS.gene54153:CDS |
| ATGCAACTCATGTTTGGAAA+AGG | 0.426037 | 5.4:+61604241 | MS.gene54153:CDS |
| GGGAGAGGCGGTTGAGGAGA+GGG | 0.427294 | 5.4:-61603147 | None:intergenic |
| GGCGGTGGGAGAGGCGGTTG+AGG | 0.430579 | 5.4:-61603153 | None:intergenic |
| ATCATGCTCTTATATTGATC+AGG | 0.430628 | 5.4:-61604984 | None:intergenic |
| GGGAATGCGTTGTCGGGATC+AGG | 0.434612 | 5.4:-61603220 | None:intergenic |
| CTCTTATATTGATCAGGAAC+TGG | 0.436806 | 5.4:-61604978 | None:intergenic |
| GGAGTATGGGAATGCGTTGT+CGG | 0.436867 | 5.4:-61603227 | None:intergenic |
| CTCTCATCATGCCCAACTCT+TGG | 0.445462 | 5.4:-61604327 | None:intergenic |
| TGAGGTTCACATTGGTTATG+TGG | 0.445542 | 5.4:+61604173 | MS.gene54153:CDS |
| TATGGGACGAATCAGTTAAA+GGG | 0.445762 | 5.4:-61604533 | None:intergenic |
| TTGAGATTGTTATTCAGAGC+AGG | 0.449826 | 5.4:-61604900 | None:intergenic |
| CTGGAAGAGGCACCTGAGAA+TGG | 0.451862 | 5.4:+61603370 | MS.gene54153:CDS |
| GAGTATGGGAATGCGTTGTC+GGG | 0.452168 | 5.4:-61603226 | None:intergenic |
| CATGAAATTCGAACATGTAC+TGG | 0.464615 | 5.4:+61604198 | MS.gene54153:CDS |
| GAGGGTGGATGTGAGGCGGT+GGG | 0.465523 | 5.4:-61603167 | None:intergenic |
| GGCACAAGCAACCCATTCTC+AGG | 0.469315 | 5.4:-61603382 | None:intergenic |
| TGCAACTCATGTTTGGAAAA+GGG | 0.477947 | 5.4:+61604242 | MS.gene54153:CDS |
| GTTGCTTGTGCCTGAGCTTG+TGG | 0.486787 | 5.4:+61603393 | MS.gene54153:CDS |
| ATTCTCAACTTATGTCCCTT+CGG | 0.486936 | 5.4:-61604765 | None:intergenic |
| TTCGGACCAACCTGAACCTC+AGG | 0.487485 | 5.4:-61604747 | None:intergenic |
| CTCGCAACTTCCACAAGCTC+AGG | 0.488137 | 5.4:-61603403 | None:intergenic |
| AGCGGAGAGAGAAGCACGAA+AGG | 0.489019 | 5.4:+61603330 | MS.gene54153:CDS |
| TGGCAAGGCTCCCGCTGTTG+TGG | 0.489320 | 5.4:+61604932 | MS.gene54153:CDS |
| CGTGTTGGCAAGCCAAGAGT+TGG | 0.505066 | 5.4:+61604315 | MS.gene54153:CDS |
| AGATGAAAGGAACAAATTAA+GGG | 0.505884 | 5.4:+61604629 | MS.gene54153:CDS |
| GTATACATACATTGGACTCA+TGG | 0.507148 | 5.4:+61604658 | MS.gene54153:CDS |
| TTGTCGGGATCAGGTGAGTC+GGG | 0.509945 | 5.4:-61603211 | None:intergenic |
| ATACAAAGTTCAACCATGGC+AGG | 0.511844 | 5.4:-61604369 | None:intergenic |
| ACTTTCATTGGCGTCACGTA+GGG | 0.513231 | 5.4:-61603289 | None:intergenic |
| CAACTCTTGGCTTGCCAACA+CGG | 0.513950 | 5.4:-61604314 | None:intergenic |
| TGAGGTTCAGGTTGGTCCGA+AGG | 0.514842 | 5.4:+61604749 | MS.gene54153:CDS |
| GTTGAACTTTGTATACAAGC+AGG | 0.516262 | 5.4:+61604378 | MS.gene54153:CDS |
| GGTTGGGTACGTCGGAGTAT+GGG | 0.517051 | 5.4:-61603240 | None:intergenic |
| CTCGGAATGGTTTACATGCA+TGG | 0.519540 | 5.4:+61604811 | MS.gene54153:CDS |
| TGGGAGAGGCGGTTGAGGAG+AGG | 0.520553 | 5.4:-61603148 | None:intergenic |
| TGGAAGAGGCACCTGAGAAT+GGG | 0.526375 | 5.4:+61603371 | MS.gene54153:CDS |
| GGCAACATTAGATGATATTG+TGG | 0.532194 | 5.4:+61604839 | MS.gene54153:CDS |
| GGATTTAAGTATACATACAT+TGG | 0.535863 | 5.4:+61604650 | MS.gene54153:CDS |
| GTGTTGGCAAGCCAAGAGTT+GGG | 0.538886 | 5.4:+61604316 | MS.gene54153:CDS |
| ATGTGAGGCGGTGGGAGAGG+CGG | 0.539543 | 5.4:-61603159 | None:intergenic |
| ACCGGAAAGTAGAAACCCTC+TGG | 0.543290 | 5.4:-61603440 | None:intergenic |
| ATCAGGTGCAAAGAAGATCA+TGG | 0.544243 | 5.4:+61604692 | MS.gene54153:CDS |
| TCGAACGAGTTGCTTCAAAC+CGG | 0.545557 | 5.4:-61603458 | None:intergenic |
| GCAACTCATGTTTGGAAAAG+GGG | 0.553986 | 5.4:+61604243 | MS.gene54153:CDS |
| TATTGTCCTGAGGTTCAGGT+TGG | 0.554273 | 5.4:+61604741 | MS.gene54153:CDS |
| TGTTCCACGTATCCCTGCCA+TGG | 0.559336 | 5.4:+61604356 | MS.gene54153:CDS |
| GGGACAAGTGTCGGATGTGA+AGG | 0.560421 | 5.4:-61603191 | None:intergenic |
| TGAGATTGTTATTCAGAGCA+GGG | 0.561964 | 5.4:-61604899 | None:intergenic |
| ATCAGTTGAGTGAAGATGAA+AGG | 0.564636 | 5.4:+61604616 | MS.gene54153:CDS |
| AATTTCATTATCTTCCGCAA+CGG | 0.566873 | 5.4:-61604481 | None:intergenic |
| CATGTACTGGACCAAAGAGT+TGG | 0.567295 | 5.4:+61604211 | MS.gene54153:CDS |
| GAGGTTCACATTGGTTATGT+GGG | 0.570250 | 5.4:+61604174 | MS.gene54153:CDS |
| ACACAGAGTTCCACAACAGC+GGG | 0.571280 | 5.4:-61604942 | None:intergenic |
| AGGAGAGGGTGGATGTGAGG+CGG | 0.571350 | 5.4:-61603171 | None:intergenic |
| CAAGAGTTGGGCATGATGAG+AGG | 0.572748 | 5.4:+61604328 | MS.gene54153:CDS |
| TTTGATTGCAAGGGCGAAAG+CGG | 0.572968 | 5.4:+61603312 | MS.gene54153:CDS |
| AAGTATGTTGTGAATACTTG+TGG | 0.576332 | 5.4:+61604717 | MS.gene54153:CDS |
| GATGATTGCGGTGGTGCGCA+TGG | 0.577947 | 5.4:-61603116 | None:intergenic |
| TCGGCTAGGGTTGGGTACGT+CGG | 0.581279 | 5.4:-61603248 | None:intergenic |
| AGGTGAGTCGGGACAAGTGT+CGG | 0.586550 | 5.4:-61603200 | None:intergenic |
| GCATTTCACTTCAGGCAACA+AGG | 0.587451 | 5.4:-61605046 | None:intergenic |
| AGACTTTGGACCTTCTCTAA+GGG | 0.591995 | 5.4:-61604567 | None:intergenic |
| AACTTTCATTGGCGTCACGT+AGG | 0.595944 | 5.4:-61603290 | None:intergenic |
| TCAAAGCATCAGTCTCGGAA+TGG | 0.596875 | 5.4:+61604798 | MS.gene54153:CDS |
| GTCGGATGTGAAGGAGAGGG+TGG | 0.597060 | 5.4:-61603182 | None:intergenic |
| TGAAGGAGAGGGTGGATGTG+AGG | 0.597062 | 5.4:-61603174 | None:intergenic |
| GTTGTCGGGATCAGGTGAGT+CGG | 0.597063 | 5.4:-61603212 | None:intergenic |
| GCAACATTAGATGATATTGT+GGG | 0.597987 | 5.4:+61604840 | MS.gene54153:CDS |
| GAAGAGTTTATCAAGCCAGA+GGG | 0.598737 | 5.4:+61603425 | MS.gene54153:CDS |
| AGGGAGTTGAGAGATGATTG+CGG | 0.601953 | 5.4:-61603128 | None:intergenic |
| GTCAACTTCATCTCGTTCTG+GGG | 0.607681 | 5.4:-61605024 | None:intergenic |
| GTTAAAAGAGCCCTTAGAGA+AGG | 0.610085 | 5.4:+61604557 | MS.gene54153:CDS |
| GCCGTGTAGAGTTCTGGAAG+AGG | 0.610934 | 5.4:+61603357 | MS.gene54153:CDS |
| GAGGTTCAGGTTGGTCCGAA+GGG | 0.611180 | 5.4:+61604750 | MS.gene54153:CDS |
| AGAAGAGTTTATCAAGCCAG+AGG | 0.612033 | 5.4:+61603424 | MS.gene54153:CDS |
| AGGCTTCAAAGCATCAGTCT+CGG | 0.613836 | 5.4:+61604793 | MS.gene54153:CDS |
| TGGCATGTTGAGGATCTGAA+TGG | 0.616186 | 5.4:+61604876 | MS.gene54153:CDS |
| TCAACCATGGCAGGGATACG+TGG | 0.619096 | 5.4:-61604360 | None:intergenic |
| ACATAAGTTGAGAATGTGCA+AGG | 0.624521 | 5.4:+61604773 | MS.gene54153:CDS |
| TGGTTTACATGCATGGCAAG+AGG | 0.626947 | 5.4:+61604818 | MS.gene54153:CDS |
| TACAAAGTTCAACCATGGCA+GGG | 0.628904 | 5.4:-61604368 | None:intergenic |
| AAGTGTCGGATGTGAAGGAG+AGG | 0.630432 | 5.4:-61603186 | None:intergenic |
| TTTCATTTGTATGACCGTGT+TGG | 0.631952 | 5.4:+61604300 | MS.gene54153:CDS |
| CTGGACCAAAGAGTTGGCTA+CGG | 0.635420 | 5.4:+61604217 | MS.gene54153:CDS |
| AAGGGGAGGTGTTCAAGACG+TGG | 0.647128 | 5.4:+61604260 | MS.gene54153:CDS |
| TCTCAAGAGATATTATGGCA+AGG | 0.658803 | 5.4:+61604917 | MS.gene54153:CDS |
| CACACAGAGTTCCACAACAG+CGG | 0.659793 | 5.4:-61604943 | None:intergenic |
| AGAGAAGGTCCAAAGTCTAG+TGG | 0.660592 | 5.4:+61604572 | MS.gene54153:CDS |
| GGAACTCTGTGTGTATGCTG+GGG | 0.667564 | 5.4:+61604953 | MS.gene54153:CDS |
| ACTCATGTTTGGAAAAGGGG+AGG | 0.669405 | 5.4:+61604246 | MS.gene54153:CDS |
| GAGCATGATGAGATTAGACG+TGG | 0.679308 | 5.4:+61604998 | MS.gene54153:CDS |
| AGTGTCGGATGTGAAGGAGA+GGG | 0.685621 | 5.4:-61603185 | None:intergenic |
| GCCTCTTCCAGAACTCTACA+CGG | 0.688795 | 5.4:-61603358 | None:intergenic |
| TACTTGTGGATATTGTCCTG+AGG | 0.690759 | 5.4:+61604731 | MS.gene54153:CDS |
| TTGTATACAAAGTTCAACCA+TGG | 0.698411 | 5.4:-61604373 | None:intergenic |
| GAGTTGAGAGATGATTGCGG+TGG | 0.777552 | 5.4:-61603125 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTCTTAAAAAAAATAGAT+TGG | + | chr5.4:61603936-61603955 | MS.gene54153:intron | 10.0% |
| !!! | TTTTTAAGAAAAATGACATA+CGG | - | chr5.4:61603928-61603947 | None:intergenic | 15.0% |
| !! | TTAACTCATTATATTAGATG+AGG | - | chr5.4:61603663-61603682 | None:intergenic | 20.0% |
| !! | TTAATTTAAGAATCACACAA+AGG | - | chr5.4:61603986-61604005 | None:intergenic | 20.0% |
| !!! | GTTTTCTTTCTGATTTTATT+CGG | - | chr5.4:61603270-61603289 | None:intergenic | 20.0% |
| !!! | TGATTAGAATATGGTAATTT+TGG | + | chr5.4:61603759-61603778 | MS.gene54153:intron | 20.0% |
| ! | AACAATCTCAAGAGATATTA+TGG | + | chr5.4:61604912-61604931 | MS.gene54153:CDS | 25.0% |
| ! | AAGATGAAAGGAACAAATTA+AGG | + | chr5.4:61604628-61604647 | MS.gene54153:CDS | 25.0% |
| ! | AGATGAAAGGAACAAATTAA+GGG | + | chr5.4:61604629-61604648 | MS.gene54153:CDS | 25.0% |
| ! | AGTGTTCAATGATTAGAATA+TGG | + | chr5.4:61603750-61603769 | MS.gene54153:intron | 25.0% |
| ! | ATGATGGTTAAGAATTTAAG+TGG | + | chr5.4:61603571-61603590 | MS.gene54153:intron | 25.0% |
| ! | GGATTTAAGTATACATACAT+TGG | + | chr5.4:61604650-61604669 | MS.gene54153:CDS | 25.0% |
| ! | TAAGGAATCACTTAATTGAT+GGG | - | chr5.4:61603796-61603815 | None:intergenic | 25.0% |
| ! | TTAAGGAATCACTTAATTGA+TGG | - | chr5.4:61603797-61603816 | None:intergenic | 25.0% |
| !! | ACCTTAAACAACAAAAGTTT+TGG | + | chr5.4:61603831-61603850 | MS.gene54153:intron | 25.0% |
| !! | GTTTAGTTACTTTAGTATCT+AGG | + | chr5.4:61603629-61603648 | MS.gene54153:intron | 25.0% |
| !! | TTTGAAGTAGAAAATGATGA+TGG | + | chr5.4:61603555-61603574 | MS.gene54153:intron | 25.0% |
| !!! | AACAAAAGTTTTGGAATGTA+GGG | + | chr5.4:61603840-61603859 | MS.gene54153:intron | 25.0% |
| !!! | AATAGATTGGCTCTTTTAAA+AGG | + | chr5.4:61603949-61603968 | MS.gene54153:intron | 25.0% |
| !!! | AATGAAAGTTTTGATTGCAA+GGG | + | chr5.4:61603303-61603322 | MS.gene54153:CDS | 25.0% |
| !!! | ATGCATTCTCTCTTTTTTAT+GGG | + | chr5.4:61603506-61603525 | MS.gene54153:intron | 25.0% |
| !!! | CATACAAATGAAAGCATTTT+GGG | - | chr5.4:61604293-61604312 | None:intergenic | 25.0% |
| !!! | TATGCATTCTCTCTTTTTTA+TGG | + | chr5.4:61603505-61603524 | MS.gene54153:intron | 25.0% |
| !!! | TCATACAAATGAAAGCATTT+TGG | - | chr5.4:61604294-61604313 | None:intergenic | 25.0% |
| !!! | TCCAAAACTTTTGTTGTTTA+AGG | - | chr5.4:61603835-61603854 | None:intergenic | 25.0% |
| !!! | TCTTGGCTTTTTAATGTTTT+TGG | + | chr5.4:61604072-61604091 | MS.gene54153:intron | 25.0% |
| !!! | TTTAATGGTTTTGACTTATC+AGG | + | chr5.4:61604142-61604161 | MS.gene54153:intron | 25.0% |
| AAACCTGTATATTGCATTGA+AGG | + | chr5.4:61604438-61604457 | MS.gene54153:CDS | 30.0% | |
| AAGTATGTTGTGAATACTTG+TGG | + | chr5.4:61604717-61604736 | MS.gene54153:CDS | 30.0% | |
| AATACCTATAAATTAGTCCC+TGG | - | chr5.4:61603725-61603744 | None:intergenic | 30.0% | |
| AATTTCATTATCTTCCGCAA+CGG | - | chr5.4:61604484-61604503 | None:intergenic | 30.0% | |
| ATCATGCTCTTATATTGATC+AGG | - | chr5.4:61604987-61605006 | None:intergenic | 30.0% | |
| CTTGCAATCAAAACTTTCAT+TGG | - | chr5.4:61603304-61603323 | None:intergenic | 30.0% | |
| GCAACATTAGATGATATTGT+GGG | + | chr5.4:61604840-61604859 | MS.gene54153:CDS | 30.0% | |
| GGAGAACAAAATAAGTCATA+TGG | + | chr5.4:61604593-61604612 | MS.gene54153:CDS | 30.0% | |
| TAAGTGATTCCTTAATCTCT+GGG | + | chr5.4:61603802-61603821 | MS.gene54153:intron | 30.0% | |
| TTAAAAAATTTCCCACGAAG+AGG | + | chr5.4:61604409-61604428 | MS.gene54153:CDS | 30.0% | |
| TTAAGTGATTCCTTAATCTC+TGG | + | chr5.4:61603801-61603820 | MS.gene54153:intron | 30.0% | |
| TTGTATACAAAGTTCAACCA+TGG | - | chr5.4:61604376-61604395 | None:intergenic | 30.0% | |
| ! | TAAGGGCTCTTTTAACATAT+GGG | - | chr5.4:61604553-61604572 | None:intergenic | 30.0% |
| ! | TTTCTGATTTTATTCGGCTA+GGG | - | chr5.4:61603264-61603283 | None:intergenic | 30.0% |
| ! | TTTTGTAATGAGGTTCACAT+TGG | + | chr5.4:61604165-61604184 | MS.gene54153:CDS | 30.0% |
| !! | ACTTATCAGGTTTTGTAATG+AGG | + | chr5.4:61604155-61604174 | MS.gene54153:intron | 30.0% |
| !!! | ACAAAAGTTTTGGAATGTAG+GGG | + | chr5.4:61603841-61603860 | MS.gene54153:intron | 30.0% |
| !!! | CAACAAAAGTTTTGGAATGT+AGG | + | chr5.4:61603839-61603858 | MS.gene54153:intron | 30.0% |
| !!! | CAATGAAAGTTTTGATTGCA+AGG | + | chr5.4:61603302-61603321 | MS.gene54153:CDS | 30.0% |
| !!! | TCTTCGTGGGAAATTTTTTA+AGG | - | chr5.4:61604410-61604429 | None:intergenic | 30.0% |
| AATGCCAGGGACTAATTTAT+AGG | + | chr5.4:61603718-61603737 | MS.gene54153:intron | 35.0% | |
| ACTGATATGAGGGAAAATGA+CGG | + | chr5.4:61603880-61603899 | MS.gene54153:intron | 35.0% | |
| AGAAGTAGTACAGGTTTCAT+TGG | + | chr5.4:61604098-61604117 | MS.gene54153:intron | 35.0% | |
| ATATGGGACGAATCAGTTAA+AGG | - | chr5.4:61604537-61604556 | None:intergenic | 35.0% | |
| ATCAGTTGAGTGAAGATGAA+AGG | + | chr5.4:61604616-61604635 | MS.gene54153:CDS | 35.0% | |
| ATGCAACTCATGTTTGGAAA+AGG | + | chr5.4:61604241-61604260 | MS.gene54153:CDS | 35.0% | |
| ATTCTCAACTTATGTCCCTT+CGG | - | chr5.4:61604768-61604787 | None:intergenic | 35.0% | |
| CATGAAATTCGAACATGTAC+TGG | + | chr5.4:61604198-61604217 | MS.gene54153:CDS | 35.0% | |
| CTCTTATATTGATCAGGAAC+TGG | - | chr5.4:61604981-61605000 | None:intergenic | 35.0% | |
| CTTCCTTCAATGCAATATAC+AGG | - | chr5.4:61604444-61604463 | None:intergenic | 35.0% | |
| GGCAACATTAGATGATATTG+TGG | + | chr5.4:61604839-61604858 | MS.gene54153:CDS | 35.0% | |
| GTATACATACATTGGACTCA+TGG | + | chr5.4:61604658-61604677 | MS.gene54153:CDS | 35.0% | |
| GTTGAACTTTGTATACAAGC+AGG | + | chr5.4:61604378-61604397 | MS.gene54153:CDS | 35.0% | |
| TATGGGACGAATCAGTTAAA+GGG | - | chr5.4:61604536-61604555 | None:intergenic | 35.0% | |
| TCAACATGCCAGACAAAATT+TGG | - | chr5.4:61604867-61604886 | None:intergenic | 35.0% | |
| TCTCAAGAGATATTATGGCA+AGG | + | chr5.4:61604917-61604936 | MS.gene54153:CDS | 35.0% | |
| TGCAACTCATGTTTGGAAAA+GGG | + | chr5.4:61604242-61604261 | MS.gene54153:CDS | 35.0% | |
| TTCCTCATTTGAAAATGCCA+GGG | + | chr5.4:61603705-61603724 | MS.gene54153:intron | 35.0% | |
| TTTCATTTGTATGACCGTGT+TGG | + | chr5.4:61604300-61604319 | MS.gene54153:CDS | 35.0% | |
| ! | AAATTTTGTCTGGCATGTTG+AGG | + | chr5.4:61604866-61604885 | MS.gene54153:CDS | 35.0% |
| ! | ACATAAGTTGAGAATGTGCA+AGG | + | chr5.4:61604773-61604792 | MS.gene54153:CDS | 35.0% |
| ! | AGTGGTAGATTTTTGTGTCA+TGG | + | chr5.4:61604048-61604067 | MS.gene54153:intron | 35.0% |
| ! | CTAAGGGCTCTTTTAACATA+TGG | - | chr5.4:61604554-61604573 | None:intergenic | 35.0% |
| ! | CTTTCTGATTTTATTCGGCT+AGG | - | chr5.4:61603265-61603284 | None:intergenic | 35.0% |
| ! | GAATCACACAAAGGCATATT+TGG | - | chr5.4:61603977-61603996 | None:intergenic | 35.0% |
| ! | GATTTTTGTGTCATGGATCT+TGG | + | chr5.4:61604055-61604074 | MS.gene54153:intron | 35.0% |
| ! | GTAAGATTGCACTGATATGA+GGG | + | chr5.4:61603870-61603889 | MS.gene54153:intron | 35.0% |
| ! | TCATGGTTTGAGATGATATC+AGG | + | chr5.4:61604675-61604694 | MS.gene54153:CDS | 35.0% |
| ! | TGAGATTGTTATTCAGAGCA+GGG | - | chr5.4:61604902-61604921 | None:intergenic | 35.0% |
| ! | TGTAAGATTGCACTGATATG+AGG | + | chr5.4:61603869-61603888 | MS.gene54153:intron | 35.0% |
| ! | TTGAGATTGTTATTCAGAGC+AGG | - | chr5.4:61604903-61604922 | None:intergenic | 35.0% |
| ! | TTTTGTTCTCCACTAGACTT+TGG | - | chr5.4:61604584-61604603 | None:intergenic | 35.0% |
| !! | CTTGTTGGCTTCACATTTAA+TGG | + | chr5.4:61604127-61604146 | MS.gene54153:intron | 35.0% |
| !! | GCAGCATTTGTTTTTCTAAG+TGG | + | chr5.4:61604030-61604049 | MS.gene54153:intron | 35.0% |
| !! | TTTCATTGGCTTGTACTTGT+TGG | + | chr5.4:61604112-61604131 | MS.gene54153:intron | 35.0% |
| !!! | CAAAAGTTTTGGAATGTAGG+GGG | + | chr5.4:61603842-61603861 | MS.gene54153:intron | 35.0% |
| !!! | TTTTGGAGTAGAAGTAGTAC+AGG | + | chr5.4:61604089-61604108 | MS.gene54153:intron | 35.0% |
| AGAAGAGTTTATCAAGCCAG+AGG | + | chr5.4:61603424-61603443 | MS.gene54153:CDS | 40.0% | |
| AGACTTTGGACCTTCTCTAA+GGG | - | chr5.4:61604570-61604589 | None:intergenic | 40.0% | |
| ATACAAAGTTCAACCATGGC+AGG | - | chr5.4:61604372-61604391 | None:intergenic | 40.0% | |
| ATCAGGTGCAAAGAAGATCA+TGG | + | chr5.4:61604692-61604711 | MS.gene54153:CDS | 40.0% | |
| CTGATATGAGGGAAAATGAC+GGG | + | chr5.4:61603881-61603900 | MS.gene54153:intron | 40.0% | |
| GAAGAGTTTATCAAGCCAGA+GGG | + | chr5.4:61603425-61603444 | MS.gene54153:CDS | 40.0% | |
| GCAACTCATGTTTGGAAAAG+GGG | + | chr5.4:61604243-61604262 | MS.gene54153:CDS | 40.0% | |
| GTTAAAAGAGCCCTTAGAGA+AGG | + | chr5.4:61604557-61604576 | MS.gene54153:CDS | 40.0% | |
| GTTCCTCATTTGAAAATGCC+AGG | + | chr5.4:61603704-61603723 | MS.gene54153:intron | 40.0% | |
| TACAAAGTTCAACCATGGCA+GGG | - | chr5.4:61604371-61604390 | None:intergenic | 40.0% | |
| TACGGAATGCAACTCATGTT+TGG | + | chr5.4:61604235-61604254 | MS.gene54153:CDS | 40.0% | |
| TACTTGTGGATATTGTCCTG+AGG | + | chr5.4:61604731-61604750 | MS.gene54153:CDS | 40.0% | |
| TAGACTTTGGACCTTCTCTA+AGG | - | chr5.4:61604571-61604590 | None:intergenic | 40.0% | |
| ! | GAGGTTCACATTGGTTATGT+GGG | + | chr5.4:61604174-61604193 | MS.gene54153:CDS | 40.0% |
| ! | GATTTTATTCGGCTAGGGTT+GGG | - | chr5.4:61603259-61603278 | None:intergenic | 40.0% |
| ! | GGTATTTTGCCCAGAGATTA+AGG | - | chr5.4:61603814-61603833 | None:intergenic | 40.0% |
| ! | TGAGGTTCACATTGGTTATG+TGG | + | chr5.4:61604173-61604192 | MS.gene54153:CDS | 40.0% |
| ! | TGATTTTATTCGGCTAGGGT+TGG | - | chr5.4:61603260-61603279 | None:intergenic | 40.0% |
| ! | TTGTGGGTCCAAATTTTGTC+TGG | + | chr5.4:61604856-61604875 | MS.gene54153:CDS | 40.0% |
| AACTTTCATTGGCGTCACGT+AGG | - | chr5.4:61603293-61603312 | None:intergenic | 45.0% | |
| ACTCATGTTTGGAAAAGGGG+AGG | + | chr5.4:61604246-61604265 | MS.gene54153:CDS | 45.0% | |
| ACTTTCATTGGCGTCACGTA+GGG | - | chr5.4:61603292-61603311 | None:intergenic | 45.0% | |
| AGAGAAGGTCCAAAGTCTAG+TGG | + | chr5.4:61604572-61604591 | MS.gene54153:CDS | 45.0% | |
| AGGGAGTTGAGAGATGATTG+CGG | - | chr5.4:61603131-61603150 | None:intergenic | 45.0% | |
| AGGTCAACTTCATCTCGTTC+TGG | - | chr5.4:61605029-61605048 | None:intergenic | 45.0% | |
| CATGTACTGGACCAAAGAGT+TGG | + | chr5.4:61604211-61604230 | MS.gene54153:CDS | 45.0% | |
| CTCGGAATGGTTTACATGCA+TGG | + | chr5.4:61604811-61604830 | MS.gene54153:CDS | 45.0% | |
| GAGCATGATGAGATTAGACG+TGG | + | chr5.4:61604998-61605017 | MS.gene54153:CDS | 45.0% | |
| GGTCAACTTCATCTCGTTCT+GGG | - | chr5.4:61605028-61605047 | None:intergenic | 45.0% | |
| GTCAACTTCATCTCGTTCTG+GGG | - | chr5.4:61605027-61605046 | None:intergenic | 45.0% | |
| TATTGTCCTGAGGTTCAGGT+TGG | + | chr5.4:61604741-61604760 | MS.gene54153:CDS | 45.0% | |
| TCGAACGAGTTGCTTCAAAC+CGG | - | chr5.4:61603461-61603480 | None:intergenic | 45.0% | |
| TGGAACTCTGTGTGTATGCT+GGG | + | chr5.4:61604952-61604971 | MS.gene54153:CDS | 45.0% | |
| TGGATATTGTCCTGAGGTTC+AGG | + | chr5.4:61604737-61604756 | MS.gene54153:CDS | 45.0% | |
| TGGCATGTTGAGGATCTGAA+TGG | + | chr5.4:61604876-61604895 | MS.gene54153:CDS | 45.0% | |
| TGGTTTACATGCATGGCAAG+AGG | + | chr5.4:61604818-61604837 | MS.gene54153:CDS | 45.0% | |
| TTTGATTGCAAGGGCGAAAG+CGG | + | chr5.4:61603312-61603331 | MS.gene54153:CDS | 45.0% | |
| ! | AGGCTTCAAAGCATCAGTCT+CGG | + | chr5.4:61604793-61604812 | MS.gene54153:CDS | 45.0% |
| ! | GCAACTCGTTCGAGTTATTC+CGG | + | chr5.4:61603468-61603487 | MS.gene54153:CDS | 45.0% |
| ! | GTCCCTGGCATTTTCAAATG+AGG | - | chr5.4:61603710-61603729 | None:intergenic | 45.0% |
| ! | TCAAAGCATCAGTCTCGGAA+TGG | + | chr5.4:61604798-61604817 | MS.gene54153:CDS | 45.0% |
| !! | TGCAGATTTTGAGTCCGTTG+CGG | + | chr5.4:61604467-61604486 | MS.gene54153:CDS | 45.0% |
| !!! | AGGTTTTGTTCTCCTCTTCG+TGG | - | chr5.4:61604424-61604443 | None:intergenic | 45.0% |
| !!! | GGTTTTGTTCTCCTCTTCGT+GGG | - | chr5.4:61604423-61604442 | None:intergenic | 45.0% |
| ACACAGAGTTCCACAACAGC+GGG | - | chr5.4:61604945-61604964 | None:intergenic | 50.0% | |
| ACCGGAAAGTAGAAACCCTC+TGG | - | chr5.4:61603443-61603462 | None:intergenic | 50.0% | |
| CAAGAGTTGGGCATGATGAG+AGG | + | chr5.4:61604328-61604347 | MS.gene54153:CDS | 50.0% | |
| CACACAGAGTTCCACAACAG+CGG | - | chr5.4:61604946-61604965 | None:intergenic | 50.0% | |
| CTCTCATCATGCCCAACTCT+TGG | - | chr5.4:61604330-61604349 | None:intergenic | 50.0% | |
| CTGGACCAAAGAGTTGGCTA+CGG | + | chr5.4:61604217-61604236 | MS.gene54153:CDS | 50.0% | |
| GAGTATGGGAATGCGTTGTC+GGG | - | chr5.4:61603229-61603248 | None:intergenic | 50.0% | |
| GAGTTGAGAGATGATTGCGG+TGG | - | chr5.4:61603128-61603147 | None:intergenic | 50.0% | |
| GCATTCCGTAGCCAACTCTT+TGG | - | chr5.4:61604225-61604244 | None:intergenic | 50.0% | |
| GCCAGAGGGTTTCTACTTTC+CGG | + | chr5.4:61603439-61603458 | MS.gene54153:CDS | 50.0% | |
| GCCTCTTCCAGAACTCTACA+CGG | - | chr5.4:61603361-61603380 | None:intergenic | 50.0% | |
| GGAACTCTGTGTGTATGCTG+GGG | + | chr5.4:61604953-61604972 | MS.gene54153:CDS | 50.0% | |
| GGAGTATGGGAATGCGTTGT+CGG | - | chr5.4:61603230-61603249 | None:intergenic | 50.0% | |
| GTGGAACTCTGTGTGTATGC+TGG | + | chr5.4:61604951-61604970 | MS.gene54153:CDS | 50.0% | |
| ! | AGTGTCGGATGTGAAGGAGA+GGG | - | chr5.4:61603188-61603207 | None:intergenic | 50.0% |
| ! | GTGTTGGCAAGCCAAGAGTT+GGG | + | chr5.4:61604316-61604335 | MS.gene54153:CDS | 50.0% |
| !! | AAGTGTCGGATGTGAAGGAG+AGG | - | chr5.4:61603189-61603208 | None:intergenic | 50.0% |
| !! | CAACTCTTGGCTTGCCAACA+CGG | - | chr5.4:61604317-61604336 | None:intergenic | 50.0% |
| !! | TGGAAGAGGCACCTGAGAAT+GGG | + | chr5.4:61603371-61603390 | MS.gene54153:CDS | 50.0% |
| AGGTGAGTCGGGACAAGTGT+CGG | - | chr5.4:61603203-61603222 | None:intergenic | 55.0% | |
| CTCGCAACTTCCACAAGCTC+AGG | - | chr5.4:61603406-61603425 | None:intergenic | 55.0% | |
| GCATACTCGCAGCGCAAAAC+CGG | - | chr5.4:61603490-61603509 | None:intergenic | 55.0% | |
| GGCACAAGCAACCCATTCTC+AGG | - | chr5.4:61603385-61603404 | None:intergenic | 55.0% | |
| GGTTGGGTACGTCGGAGTAT+GGG | - | chr5.4:61603243-61603262 | None:intergenic | 55.0% | |
| GTTGCTTGTGCCTGAGCTTG+TGG | + | chr5.4:61603393-61603412 | MS.gene54153:CDS | 55.0% | |
| GTTGTCGGGATCAGGTGAGT+CGG | - | chr5.4:61603215-61603234 | None:intergenic | 55.0% | |
| TCAACCATGGCAGGGATACG+TGG | - | chr5.4:61604363-61604382 | None:intergenic | 55.0% | |
| TGAAGGAGAGGGTGGATGTG+AGG | - | chr5.4:61603177-61603196 | None:intergenic | 55.0% | |
| TGTTCCACGTATCCCTGCCA+TGG | + | chr5.4:61604356-61604375 | MS.gene54153:CDS | 55.0% | |
| TTCGGACCAACCTGAACCTC+AGG | - | chr5.4:61604750-61604769 | None:intergenic | 55.0% | |
| TTGTCGGGATCAGGTGAGTC+GGG | - | chr5.4:61603214-61603233 | None:intergenic | 55.0% | |
| ! | AGCGGAGAGAGAAGCACGAA+AGG | + | chr5.4:61603330-61603349 | MS.gene54153:CDS | 55.0% |
| ! | CGTGTTGGCAAGCCAAGAGT+TGG | + | chr5.4:61604315-61604334 | MS.gene54153:CDS | 55.0% |
| !! | AAGGGGAGGTGTTCAAGACG+TGG | + | chr5.4:61604260-61604279 | MS.gene54153:CDS | 55.0% |
| !! | CTGGAAGAGGCACCTGAGAA+TGG | + | chr5.4:61603370-61603389 | MS.gene54153:CDS | 55.0% |
| !! | GAGGTTCAGGTTGGTCCGAA+GGG | + | chr5.4:61604750-61604769 | MS.gene54153:CDS | 55.0% |
| !! | GCCGTGTAGAGTTCTGGAAG+AGG | + | chr5.4:61603357-61603376 | MS.gene54153:CDS | 55.0% |
| !! | GGGACAAGTGTCGGATGTGA+AGG | - | chr5.4:61603194-61603213 | None:intergenic | 55.0% |
| !! | TGAGGTTCAGGTTGGTCCGA+AGG | + | chr5.4:61604749-61604768 | MS.gene54153:CDS | 55.0% |
| AGGAGAGGGTGGATGTGAGG+CGG | - | chr5.4:61603174-61603193 | None:intergenic | 60.0% | |
| GGGAATGCGTTGTCGGGATC+AGG | - | chr5.4:61603223-61603242 | None:intergenic | 60.0% | |
| GGGTTGGGTACGTCGGAGTA+TGG | - | chr5.4:61603244-61603263 | None:intergenic | 60.0% | |
| GTCGGATGTGAAGGAGAGGG+TGG | - | chr5.4:61603185-61603204 | None:intergenic | 60.0% | |
| TCGGCTAGGGTTGGGTACGT+CGG | - | chr5.4:61603251-61603270 | None:intergenic | 60.0% | |
| AGAGGGTGGATGTGAGGCGG+TGG | - | chr5.4:61603171-61603190 | None:intergenic | 65.0% | |
| ATGTGAGGCGGTGGGAGAGG+CGG | - | chr5.4:61603162-61603181 | None:intergenic | 65.0% | |
| GAGGGTGGATGTGAGGCGGT+GGG | - | chr5.4:61603170-61603189 | None:intergenic | 65.0% | |
| GGCGCAGCCGTGTAGAGTTC+TGG | + | chr5.4:61603351-61603370 | MS.gene54153:CDS | 65.0% | |
| GGGAGAGGCGGTTGAGGAGA+GGG | - | chr5.4:61603150-61603169 | None:intergenic | 65.0% | |
| TGGATGTGAGGCGGTGGGAG+AGG | - | chr5.4:61603165-61603184 | None:intergenic | 65.0% | |
| TGGCAAGGCTCCCGCTGTTG+TGG | + | chr5.4:61604932-61604951 | MS.gene54153:CDS | 65.0% | |
| TGGGAGAGGCGGTTGAGGAG+AGG | - | chr5.4:61603151-61603170 | None:intergenic | 65.0% | |
| GGCGGTGGGAGAGGCGGTTG+AGG | - | chr5.4:61603156-61603175 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.4 | gene | 61603118 | 61605058 | 61603118 | ID=MS.gene54153 |
| chr5.4 | mRNA | 61603118 | 61605058 | 61603118 | ID=MS.gene54153.t1;Parent=MS.gene54153 |
| chr5.4 | exon | 61603118 | 61603503 | 61603118 | ID=MS.gene54153.t1.exon1;Parent=MS.gene54153.t1 |
| chr5.4 | CDS | 61603118 | 61603503 | 61603118 | ID=cds.MS.gene54153.t1;Parent=MS.gene54153.t1 |
| chr5.4 | exon | 61604164 | 61605058 | 61604164 | ID=MS.gene54153.t1.exon2;Parent=MS.gene54153.t1 |
| chr5.4 | CDS | 61604164 | 61605058 | 61604164 | ID=cds.MS.gene54153.t1;Parent=MS.gene54153.t1 |
| Gene Sequence |
| Protein sequence |
