Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene54170.t1 | XP_003615750.2 | 90.6 | 754 | 25 | 1 | 1 | 708 | 1 | 754 | 0.00E+00 | 1349.3 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene54170.t1 | O22397 | 62.3 | 754 | 196 | 3 | 1 | 708 | 1 | 712 | 4.1e-271 | 935.3 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene54170.t1 | G7K729 | 90.6 | 754 | 25 | 1 | 1 | 708 | 1 | 754 | 0.0e+00 | 1349.3 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene013424 | MS.gene54170 | PPI |
MS.gene049395 | MS.gene54170 | PPI |
MS.gene54170 | MS.gene06523 | PPI |
MS.gene06767 | MS.gene54170 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene54170.t1 | MTR_5g071860 | 90.584 | 754 | 25 | 1 | 1 | 708 | 1 | 754 | 0.0 | 1400 |
MS.gene54170.t1 | MTR_5g071630 | 87.330 | 734 | 33 | 4 | 21 | 708 | 6 | 725 | 0.0 | 1290 |
MS.gene54170.t1 | MTR_5g071827 | 89.790 | 666 | 22 | 1 | 89 | 708 | 1 | 666 | 0.0 | 1229 |
MS.gene54170.t1 | MTR_6g033165 | 50.591 | 761 | 298 | 4 | 26 | 708 | 59 | 819 | 0.0 | 780 |
MS.gene54170.t1 | MTR_5g034500 | 48.656 | 781 | 320 | 6 | 8 | 708 | 3 | 782 | 0.0 | 762 |
MS.gene54170.t1 | MTR_6g007697 | 49.612 | 774 | 317 | 7 | 8 | 708 | 3 | 776 | 0.0 | 759 |
MS.gene54170.t1 | MTR_3g094090 | 48.912 | 781 | 305 | 11 | 18 | 706 | 14 | 792 | 0.0 | 744 |
MS.gene54170.t1 | MTR_8g099090 | 43.955 | 794 | 357 | 8 | 1 | 708 | 1 | 792 | 0.0 | 667 |
MS.gene54170.t1 | MTR_2g438150 | 43.409 | 751 | 362 | 6 | 18 | 708 | 42 | 789 | 0.0 | 643 |
MS.gene54170.t1 | MTR_2g438150 | 43.432 | 746 | 359 | 6 | 18 | 703 | 42 | 784 | 0.0 | 639 |
MS.gene54170.t1 | MTR_4g094660 | 43.542 | 751 | 359 | 6 | 18 | 708 | 42 | 787 | 0.0 | 622 |
MS.gene54170.t1 | MTR_8g063840 | 42.277 | 764 | 367 | 10 | 15 | 708 | 81 | 840 | 0.0 | 592 |
MS.gene54170.t1 | MTR_7g108480 | 38.177 | 757 | 393 | 9 | 2 | 708 | 42 | 773 | 0.0 | 555 |
MS.gene54170.t1 | MTR_2g008820 | 37.403 | 770 | 404 | 6 | 11 | 708 | 86 | 849 | 0.0 | 555 |
MS.gene54170.t1 | MTR_2g438160 | 47.611 | 565 | 247 | 2 | 34 | 552 | 58 | 619 | 0.0 | 550 |
MS.gene54170.t1 | MTR_8g107510 | 40.260 | 770 | 363 | 15 | 24 | 705 | 19 | 779 | 0.0 | 549 |
MS.gene54170.t1 | MTR_4g099260 | 38.076 | 759 | 386 | 10 | 26 | 708 | 65 | 815 | 0.0 | 538 |
MS.gene54170.t1 | MTR_3g094090 | 45.395 | 608 | 240 | 9 | 190 | 706 | 1 | 607 | 0.0 | 532 |
MS.gene54170.t1 | MTR_8g063900 | 37.032 | 748 | 366 | 9 | 13 | 708 | 51 | 745 | 3.71e-174 | 516 |
MS.gene54170.t1 | MTR_8g022130 | 38.630 | 730 | 377 | 11 | 26 | 708 | 61 | 766 | 2.77e-173 | 515 |
MS.gene54170.t1 | MTR_5g070670 | 36.434 | 774 | 406 | 8 | 11 | 708 | 86 | 849 | 4.54e-167 | 501 |
MS.gene54170.t1 | MTR_8g088200 | 36.316 | 760 | 407 | 9 | 19 | 708 | 30 | 782 | 1.26e-165 | 496 |
MS.gene54170.t1 | MTR_4g094660 | 42.123 | 603 | 287 | 5 | 166 | 708 | 1 | 601 | 1.01e-160 | 477 |
MS.gene54170.t1 | MTR_5g034590 | 36.864 | 236 | 130 | 4 | 424 | 659 | 133 | 349 | 8.40e-48 | 173 |
MS.gene54170.t1 | MTR_5g034590 | 45.349 | 86 | 42 | 1 | 88 | 168 | 5 | 90 | 1.16e-13 | 73.6 |
MS.gene54170.t1 | MTR_8g022160 | 52.663 | 169 | 72 | 4 | 25 | 192 | 60 | 221 | 2.09e-46 | 166 |
MS.gene54170.t1 | MTR_1g029310 | 32.540 | 126 | 78 | 2 | 176 | 301 | 12 | 130 | 7.15e-17 | 78.2 |
MS.gene54170.t1 | MTR_6g045057 | 32.051 | 156 | 99 | 3 | 181 | 333 | 8 | 159 | 2.99e-11 | 64.3 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene54170.t1 | AT2G30070 | 63.660 | 754 | 186 | 3 | 1 | 708 | 1 | 712 | 0.0 | 993 |
MS.gene54170.t1 | AT2G30070 | 60.032 | 633 | 165 | 3 | 122 | 708 | 2 | 592 | 0.0 | 785 |
MS.gene54170.t1 | AT1G70300 | 50.318 | 785 | 301 | 10 | 8 | 708 | 3 | 782 | 0.0 | 763 |
MS.gene54170.t1 | AT3G02050 | 49.049 | 789 | 321 | 5 | 1 | 708 | 1 | 789 | 0.0 | 750 |
MS.gene54170.t1 | AT2G40540 | 48.072 | 778 | 315 | 6 | 18 | 706 | 15 | 792 | 0.0 | 743 |
MS.gene54170.t1 | AT2G40540 | 48.072 | 778 | 315 | 6 | 18 | 706 | 15 | 792 | 0.0 | 743 |
MS.gene54170.t1 | AT2G40540 | 48.072 | 778 | 315 | 6 | 18 | 706 | 15 | 792 | 0.0 | 743 |
MS.gene54170.t1 | AT2G40540 | 48.072 | 778 | 315 | 6 | 18 | 706 | 15 | 792 | 0.0 | 743 |
MS.gene54170.t1 | AT2G40540 | 48.072 | 778 | 315 | 6 | 18 | 706 | 15 | 792 | 0.0 | 743 |
MS.gene54170.t1 | AT5G14880 | 50.000 | 778 | 310 | 9 | 10 | 708 | 4 | 781 | 0.0 | 743 |
MS.gene54170.t1 | AT4G23640 | 44.761 | 773 | 344 | 6 | 18 | 708 | 4 | 775 | 0.0 | 682 |
MS.gene54170.t1 | AT4G19960 | 43.941 | 751 | 344 | 6 | 30 | 708 | 62 | 807 | 0.0 | 619 |
MS.gene54170.t1 | AT1G31120 | 43.145 | 744 | 342 | 6 | 34 | 708 | 65 | 796 | 0.0 | 613 |
MS.gene54170.t1 | AT1G60160 | 41.799 | 756 | 380 | 10 | 11 | 708 | 74 | 827 | 0.0 | 608 |
MS.gene54170.t1 | AT2G35060 | 42.838 | 740 | 345 | 7 | 34 | 708 | 66 | 792 | 0.0 | 607 |
MS.gene54170.t1 | AT2G35060 | 42.838 | 740 | 345 | 7 | 34 | 708 | 66 | 792 | 0.0 | 607 |
MS.gene54170.t1 | AT2G35060 | 42.838 | 740 | 345 | 7 | 34 | 708 | 66 | 792 | 0.0 | 607 |
MS.gene54170.t1 | AT4G19960 | 42.471 | 777 | 344 | 7 | 30 | 708 | 62 | 833 | 0.0 | 606 |
MS.gene54170.t1 | AT2G35060 | 42.780 | 741 | 345 | 8 | 34 | 708 | 66 | 793 | 0.0 | 602 |
MS.gene54170.t1 | AT4G13420 | 38.482 | 764 | 403 | 10 | 2 | 708 | 32 | 785 | 0.0 | 568 |
MS.gene54170.t1 | AT5G09400 | 37.597 | 774 | 402 | 8 | 11 | 708 | 90 | 858 | 5.36e-175 | 522 |
MS.gene54170.t1 | AT4G19960 | 39.505 | 767 | 371 | 11 | 30 | 708 | 62 | 823 | 1.73e-174 | 520 |
MS.gene54170.t1 | AT4G33530 | 38.262 | 771 | 397 | 10 | 11 | 708 | 91 | 855 | 1.83e-174 | 521 |
MS.gene54170.t1 | AT4G19960 | 42.564 | 585 | 262 | 5 | 196 | 708 | 4 | 586 | 2.29e-158 | 470 |
MS.gene54170.t1 | AT4G33530 | 36.971 | 614 | 319 | 7 | 163 | 708 | 14 | 627 | 1.71e-136 | 416 |
Find 132 sgRNAs with CRISPR-Local
Find 306 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TTTCTTCATCATCTTCTTTA+AGG | 0.071012 | 5.4:+61951306 | None:intergenic |
TATTCCAAATTTCTTTAAAA+TGG | 0.164431 | 5.4:+61946842 | None:intergenic |
AGTATATCCCTGCCTGATTT+TGG | 0.190519 | 5.4:-61948502 | MS.gene54170:CDS |
AAAATGAAAGATAGCGAAAT+TGG | 0.192897 | 5.4:+61947536 | None:intergenic |
GTCAATTCATTTGTTTGTTC+TGG | 0.193129 | 5.4:+61947092 | None:intergenic |
ATTAATATCCAATTGATTTC+TGG | 0.209276 | 5.4:+61948144 | None:intergenic |
CAAAGATCAGCAGTCCTTTC+TGG | 0.213735 | 5.4:+61950334 | None:intergenic |
TCATCTGTTGGTTGCTGATT+TGG | 0.217408 | 5.4:+61950444 | None:intergenic |
GGGTGCTTTCATTTATCTTC+TGG | 0.244227 | 5.4:-61951277 | MS.gene54170:CDS |
ATAAGTAACACCTGATTCTT+TGG | 0.245477 | 5.4:+61946905 | None:intergenic |
CTGCAATGACTCGACTTTAT+AGG | 0.258661 | 5.4:+61946938 | None:intergenic |
TTTCTGCAGAAGCTGTATTT+TGG | 0.274753 | 5.4:-61948323 | MS.gene54170:intron |
ATTGGGATCCACCCGCCTTC+AGG | 0.306821 | 5.4:+61947554 | None:intergenic |
TTTCTCCGGTCTATATGTTT+AGG | 0.315964 | 5.4:-61949093 | MS.gene54170:CDS |
AAAAGCCATGCTGCAACAAC+TGG | 0.319980 | 5.4:+61949178 | None:intergenic |
TCTTGGCCATCACATGAAAA+TGG | 0.322011 | 5.4:+61946975 | None:intergenic |
CTGCTGATCTTTGTTCTGTT+GGG | 0.346699 | 5.4:-61950324 | MS.gene54170:CDS |
AACACACTTTGAAATTGAAT+TGG | 0.347433 | 5.4:-61947022 | MS.gene54170:CDS |
CCATCATGTTTGTATCTCTA+AGG | 0.349905 | 5.4:+61948094 | None:intergenic |
CACACTTCTAGCAAAATATA+TGG | 0.357605 | 5.4:-61948180 | MS.gene54170:CDS |
AGGACTCGTCTCGAAGTTCT+TGG | 0.362162 | 5.4:+61946958 | None:intergenic |
ATAATGTTCACATGGAACTA+TGG | 0.362609 | 5.4:-61947506 | MS.gene54170:CDS |
CTCAAAACCACTGGCATTGA+AGG | 0.371128 | 5.4:-61949067 | MS.gene54170:CDS |
TGATGGAAGAAACTTAAATA+TGG | 0.373743 | 5.4:-61947063 | MS.gene54170:CDS |
CGAAGGAGTTCTACATGTTT+CGG | 0.379521 | 5.4:-61947220 | MS.gene54170:CDS |
GGAGTGGTGCTTTCAATAAC+AGG | 0.385254 | 5.4:-61949028 | MS.gene54170:intron |
CAAAGTCTTGGAGTAGTCTA+TGG | 0.389439 | 5.4:-61951386 | MS.gene54170:CDS |
TCAGGTGTTACTTATATAGT+TGG | 0.390413 | 5.4:-61946897 | MS.gene54170:CDS |
TTTATGTTCCAGAAATCAAT+TGG | 0.391774 | 5.4:-61948152 | MS.gene54170:CDS |
ATAGTTCCATGTGAACATTA+TGG | 0.393280 | 5.4:+61947508 | None:intergenic |
AACTTCTCTCAATGTCATAA+TGG | 0.400991 | 5.4:+61948445 | None:intergenic |
GCTACTTCCAACATAATATC+AGG | 0.404494 | 5.4:+61946780 | None:intergenic |
ATGGTCCGTGTCCCGGGAAT+CGG | 0.404996 | 5.4:-61947404 | MS.gene54170:CDS |
GTGATCACTCCTGCAATATC+AGG | 0.405182 | 5.4:-61950276 | MS.gene54170:intron |
TATACTTCTTTGCTAGAAGT+TGG | 0.411569 | 5.4:-61946756 | MS.gene54170:CDS |
CTTAGGCATGGTCCGTGTCC+CGG | 0.418333 | 5.4:-61947411 | MS.gene54170:CDS |
ACTGCTGATCTTTGTTCTGT+TGG | 0.427972 | 5.4:-61950325 | MS.gene54170:CDS |
AAAGTGGCCACTATGAAAAC+TGG | 0.429133 | 5.4:+61948300 | None:intergenic |
CACCCATATAAGCCAAAATC+AGG | 0.430258 | 5.4:+61948490 | None:intergenic |
CTGAAAATGAGACCGATTCC+CGG | 0.431566 | 5.4:+61947392 | None:intergenic |
ACCGAAAATAGCCGGGATAC+CGG | 0.432386 | 5.4:+61947358 | None:intergenic |
AAGTGAATTCTTGCCTGGTA+TGG | 0.436212 | 5.4:+61948413 | None:intergenic |
GTATACAAGACCTCATTCTC+AGG | 0.441568 | 5.4:-61951338 | MS.gene54170:CDS |
TGTTCTTTGAAAAGCATCCT+AGG | 0.448299 | 5.4:-61950359 | MS.gene54170:CDS |
AAATTTACCTGCATTCCATC+AGG | 0.449762 | 5.4:-61947324 | MS.gene54170:CDS |
AACATGATGGGTCATGCATA+TGG | 0.455340 | 5.4:-61948081 | MS.gene54170:intron |
GATCAACTACCTGATATTGC+AGG | 0.462951 | 5.4:+61950267 | None:intergenic |
TTGGGATCCACCCGCCTTCA+GGG | 0.465191 | 5.4:+61947555 | None:intergenic |
GTCATGTCTGCTGATGATAA+TGG | 0.466473 | 5.4:-61951215 | MS.gene54170:CDS |
AACAATTTAATGCGCAGCAT+TGG | 0.467070 | 5.4:+61948223 | None:intergenic |
TTAGGCATGGTCCGTGTCCC+GGG | 0.472505 | 5.4:-61947410 | MS.gene54170:CDS |
CAGGTGTTACTTATATAGTT+GGG | 0.474382 | 5.4:-61946896 | MS.gene54170:CDS |
TTGGTATATACAATATATTC+CGG | 0.475208 | 5.4:-61949141 | MS.gene54170:CDS |
GATATACTTGTCGGTTCCAC+CGG | 0.475794 | 5.4:+61949122 | None:intergenic |
GAAGGATGGTTGTCATTAAG+TGG | 0.476467 | 5.4:-61949049 | MS.gene54170:CDS |
AAATGAAAGATAGCGAAATT+GGG | 0.479735 | 5.4:+61947537 | None:intergenic |
TTCTTTGCTAGAAGTTGGTA+TGG | 0.480280 | 5.4:-61946751 | MS.gene54170:CDS |
AGTATATCGTGCACTTTCTC+CGG | 0.482721 | 5.4:-61949107 | MS.gene54170:CDS |
AGATTAGTCATCAGCAGGAT+TGG | 0.484310 | 5.4:-61947245 | MS.gene54170:CDS |
AACTTAAATATGGAAGATCT+TGG | 0.484592 | 5.4:-61947053 | MS.gene54170:CDS |
TGAAAATGAGACCGATTCCC+GGG | 0.487702 | 5.4:+61947393 | None:intergenic |
GTTCGGTTGGCTTACTGTCA+TGG | 0.488966 | 5.4:+61949354 | None:intergenic |
GCAGATAAATTCTCATCTGT+TGG | 0.490212 | 5.4:+61950432 | None:intergenic |
CTTTGTTTAGCTGTCACAGT+TGG | 0.490283 | 5.4:-61948117 | MS.gene54170:CDS |
TTGGGAACTTGCATGACAAT+TGG | 0.496346 | 5.4:-61950306 | MS.gene54170:CDS |
CATGATGCTGAATGGAGAAA+AGG | 0.497785 | 5.4:+61949230 | None:intergenic |
TCCTACAACAGCAGCAAAAG+TGG | 0.499235 | 5.4:+61948284 | None:intergenic |
ATAAAATGACCGAAAATAGC+CGG | 0.499251 | 5.4:+61947350 | None:intergenic |
TTGGCTTACTGTCATGGAGT+TGG | 0.503361 | 5.4:+61949360 | None:intergenic |
TGTTCTACAAATTGTTCAGA+AGG | 0.507808 | 5.4:+61951560 | None:intergenic |
ATGAGCAAGATGTTATCCTT+AGG | 0.509044 | 5.4:-61947440 | MS.gene54170:CDS |
CAGAGGATTCTGCTGATACA+TGG | 0.509581 | 5.4:-61950401 | MS.gene54170:CDS |
AATGAATTGACTATAGATGA+TGG | 0.510618 | 5.4:-61947080 | MS.gene54170:CDS |
TTTAGGTTTCTCAAAACCAC+TGG | 0.512735 | 5.4:-61949076 | MS.gene54170:CDS |
CGAAACATGTAGAACTCCTT+CGG | 0.514885 | 5.4:+61947221 | None:intergenic |
TAATCTTGCTTCCGGTATCC+CGG | 0.517669 | 5.4:-61947369 | MS.gene54170:CDS |
CAGAGAACCTGATATTATGT+TGG | 0.518058 | 5.4:-61946787 | MS.gene54170:CDS |
ACTCTAGCATACCAAAGTCT+TGG | 0.519686 | 5.4:-61951398 | MS.gene54170:CDS |
CATAGACTACTCCAAGACTT+TGG | 0.520654 | 5.4:+61951387 | None:intergenic |
GAGGTCTTGTATACATAAAG+AGG | 0.520785 | 5.4:+61951347 | None:intergenic |
TCATGTATCAGAATTTAAAG+AGG | 0.520819 | 5.4:-61951442 | MS.gene54170:intron |
CATAAAGAGGAGAAGTACTT+AGG | 0.523094 | 5.4:+61951360 | None:intergenic |
CCAATTTGATGTTGAAAACA+AGG | 0.523273 | 5.4:-61947468 | MS.gene54170:CDS |
GTGTGAACAATCTTCACTCT+AGG | 0.524092 | 5.4:+61948198 | None:intergenic |
ATGAAAGATTAGTCATCAGC+AGG | 0.524208 | 5.4:-61947250 | MS.gene54170:CDS |
TTAAATATGGAAGATCTTGG+TGG | 0.527152 | 5.4:-61947050 | MS.gene54170:CDS |
CCTTAGAGATACAAACATGA+TGG | 0.530055 | 5.4:-61948094 | MS.gene54170:CDS |
ATGTGTTCCATGATGCTGAA+TGG | 0.533306 | 5.4:+61949222 | None:intergenic |
CATATAAGCCAAAATCAGGC+AGG | 0.539248 | 5.4:+61948494 | None:intergenic |
CATGCCTAAGCATGGTCCTA+AGG | 0.539255 | 5.4:+61947424 | None:intergenic |
GCTCAATTTCCCTGAGAATG+AGG | 0.540286 | 5.4:+61951328 | None:intergenic |
ACTAACACCTGATGGAATGC+AGG | 0.551251 | 5.4:+61947317 | None:intergenic |
TTATCCTTAGGACCATGCTT+AGG | 0.552419 | 5.4:-61947428 | MS.gene54170:CDS |
CATCAGCAGGATTGGTCCGA+AGG | 0.553089 | 5.4:-61947237 | MS.gene54170:CDS |
TTTCGGTGCATTGTCCGATA+CGG | 0.553523 | 5.4:-61947203 | MS.gene54170:CDS |
AGCAGTCCTTTCTGGAACCT+AGG | 0.553551 | 5.4:+61950342 | None:intergenic |
AGTTTCTACAAAGCCATACC+AGG | 0.558577 | 5.4:-61948426 | MS.gene54170:intron |
TAAAATGACCGAAAATAGCC+GGG | 0.558708 | 5.4:+61947351 | None:intergenic |
TCTGCAAAATCCCTGAAGGC+GGG | 0.566872 | 5.4:-61947565 | MS.gene54170:CDS |
GCATGTCTTTGTAACCGTAT+CGG | 0.567297 | 5.4:+61947189 | None:intergenic |
AAAGCCATGCTGCAACAACT+GGG | 0.580024 | 5.4:+61949179 | None:intergenic |
AACAACTGGGGCAAACATGA+AGG | 0.580870 | 5.4:+61949192 | None:intergenic |
GTCTGCAAAATCCCTGAAGG+CGG | 0.582828 | 5.4:-61947566 | MS.gene54170:CDS |
GGAGACAATGTATGCTGACA+TGG | 0.585033 | 5.4:-61948657 | MS.gene54170:CDS |
AAAGTGCACGATATACTTGT+CGG | 0.589834 | 5.4:+61949113 | None:intergenic |
TTTATCTGCTTATTCAACAG+AGG | 0.591386 | 5.4:-61950418 | MS.gene54170:CDS |
AAACCACTGGCATTGAAGGA+TGG | 0.591920 | 5.4:-61949063 | MS.gene54170:CDS |
TTGCCCCAGTTGTTGCAGCA+TGG | 0.595472 | 5.4:-61949183 | MS.gene54170:CDS |
TCTGAACAATTTGTAGAACA+AGG | 0.602738 | 5.4:-61951557 | MS.gene54170:CDS |
GCAAAATCCCTGAAGGCGGG+TGG | 0.603430 | 5.4:-61947562 | MS.gene54170:CDS |
CTTAGAGATACAAACATGAT+GGG | 0.605319 | 5.4:-61948093 | MS.gene54170:CDS |
AGAAACCTAAACATATAGAC+CGG | 0.605945 | 5.4:+61949088 | None:intergenic |
TTATGGCCATAATGTTCACA+TGG | 0.606833 | 5.4:-61947514 | MS.gene54170:CDS |
TATACAAGACCTCATTCTCA+GGG | 0.606947 | 5.4:-61951337 | MS.gene54170:CDS |
CAACCATCCTTCAATGCCAG+TGG | 0.609172 | 5.4:+61949060 | None:intergenic |
TGAGACCGATTCCCGGGACA+CGG | 0.614835 | 5.4:+61947399 | None:intergenic |
AAGCATCCTAGGTTCCAGAA+AGG | 0.615881 | 5.4:-61950348 | MS.gene54170:CDS |
TCTGTCTGCAAAATCCCTGA+AGG | 0.618821 | 5.4:-61947569 | MS.gene54170:CDS |
GAGAAGTGAGTATAATGCAA+AGG | 0.623702 | 5.4:+61950494 | None:intergenic |
ACACGGACCATGCCTAAGCA+TGG | 0.624244 | 5.4:+61947416 | None:intergenic |
CTTAGGACCATGCTTAGGCA+TGG | 0.633844 | 5.4:-61947423 | MS.gene54170:CDS |
ATATAAGCCAAAATCAGGCA+GGG | 0.652756 | 5.4:+61948495 | None:intergenic |
AGTTGGGCATTCCTATGCAG+AGG | 0.666901 | 5.4:-61946880 | MS.gene54170:CDS |
CAACTGTGACAGCTAAACAA+AGG | 0.675981 | 5.4:+61948118 | None:intergenic |
ACTTGCATGACAATTGGTGA+TGG | 0.676889 | 5.4:-61950300 | MS.gene54170:CDS |
GTATATACAATATATTCCGG+TGG | 0.677707 | 5.4:-61949138 | MS.gene54170:CDS |
AGAACAAGGAATATCTCACC+AGG | 0.679281 | 5.4:-61951543 | MS.gene54170:intron |
TCTGCTGATGATAATGGAGA+AGG | 0.680990 | 5.4:-61951209 | MS.gene54170:intron |
ATGGTTGTCATTAAGTGGAG+TGG | 0.687522 | 5.4:-61949044 | MS.gene54170:CDS |
AAGCCATGCTGCAACAACTG+GGG | 0.696949 | 5.4:+61949180 | None:intergenic |
GAGACAATGTATGCTGACAT+GGG | 0.720378 | 5.4:-61948656 | MS.gene54170:CDS |
AATAAGGTTAGAGTTAGACA+TGG | 0.720937 | 5.4:+61946724 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TAATTAACTAAAAATTATGA+TGG | - | chr5.4:61949413-61949432 | MS.gene54170:intron | 10.0% |
!!! | TTACAATTTTGATAATAAAT+TGG | - | chr5.4:61951147-61951166 | MS.gene54170:intron | 10.0% |
!! | AGATGATAAATATATATATC+AGG | + | chr5.4:61949500-61949519 | None:intergenic | 15.0% |
!! | TTAACTAATTATCCTAATTA+AGG | + | chr5.4:61947744-61947763 | None:intergenic | 15.0% |
!!! | AAAAGAAAAAGGTATTTATA+GGG | + | chr5.4:61948237-61948256 | None:intergenic | 15.0% |
!!! | AAAATAATAATGGATAGTTT+TGG | - | chr5.4:61947559-61947578 | MS.gene54170:CDS | 15.0% |
!!! | AAATAATATCGATATTTTTG+TGG | + | chr5.4:61949923-61949942 | None:intergenic | 15.0% |
!!! | AAATCAAATGTTTTCATTTT+TGG | + | chr5.4:61948621-61948640 | None:intergenic | 15.0% |
!!! | AAATTAAAAGTATACAATGT+TGG | - | chr5.4:61949697-61949716 | MS.gene54170:intron | 15.0% |
!!! | AATTTTAGACTTTATACTTT+TGG | - | chr5.4:61947437-61947456 | MS.gene54170:CDS | 15.0% |
!!! | CTTTTTGGTTTAAAATATTA+TGG | + | chr5.4:61948656-61948675 | None:intergenic | 15.0% |
!!! | GACAAATTTAATGTAAATTT+TGG | - | chr5.4:61947593-61947612 | MS.gene54170:intron | 15.0% |
!!! | TAAATTTAAACTACTTTTCT+TGG | - | chr5.4:61950564-61950583 | MS.gene54170:intron | 15.0% |
!!! | TAGCTTTTACAAAATAATAA+TGG | - | chr5.4:61947549-61947568 | MS.gene54170:CDS | 15.0% |
!!! | TATTCCAAATTTCTTTAAAA+TGG | + | chr5.4:61951464-61951483 | None:intergenic | 15.0% |
!!! | TTTGGAACAAAAAATAAAAA+TGG | - | chr5.4:61947611-61947630 | MS.gene54170:intron | 15.0% |
!! | ATTATAATTGTTTGGAAACA+AGG | - | chr5.4:61950647-61950666 | MS.gene54170:intron | 20.0% |
!! | CTAAACTAATTATGAAGAAA+CGG | + | chr5.4:61950365-61950384 | None:intergenic | 20.0% |
!! | GTTAATTACATACAAATTTG+TGG | + | chr5.4:61949401-61949420 | None:intergenic | 20.0% |
!! | TATTATTAATCTCTTATGCT+TGG | - | chr5.4:61946831-61946850 | MS.gene54170:CDS | 20.0% |
!! | TGTAACTATTTATTCCAAAA+TGG | + | chr5.4:61947658-61947677 | None:intergenic | 20.0% |
!! | TTATAATTGTTTGGAAACAA+GGG | - | chr5.4:61950648-61950667 | MS.gene54170:intron | 20.0% |
!! | TTGGTATATACAATATATTC+CGG | - | chr5.4:61949162-61949181 | MS.gene54170:CDS | 20.0% |
!!! | AAGATGATGAAGAAATTTTT+GGG | - | chr5.4:61947005-61947024 | MS.gene54170:CDS | 20.0% |
!!! | ATTAATATCCAATTGATTTC+TGG | + | chr5.4:61950162-61950181 | None:intergenic | 20.0% |
!!! | CTGTCATCATTTTATTTATA+TGG | + | chr5.4:61947294-61947313 | None:intergenic | 20.0% |
!!! | CTTTATTTTAGGTTTCAATT+TGG | - | chr5.4:61947468-61947487 | MS.gene54170:CDS | 20.0% |
!!! | GAAAAGAAAAAGGTATTTAT+AGG | + | chr5.4:61948238-61948257 | None:intergenic | 20.0% |
!!! | GATAGTTTTGGAATTTAAAA+TGG | - | chr5.4:61947571-61947590 | MS.gene54170:CDS | 20.0% |
!!! | GTCTTTTGTTTGTAATTTTT+TGG | + | chr5.4:61950421-61950440 | None:intergenic | 20.0% |
!!! | TCTTCCATTTTAAAGAAATT+TGG | - | chr5.4:61951457-61951476 | MS.gene54170:intron | 20.0% |
!!! | TGGTTTCTTTTCTTTATTTT+AGG | - | chr5.4:61947457-61947476 | MS.gene54170:CDS | 20.0% |
!!! | TGTTATAAATGAAACCATTT+TGG | - | chr5.4:61947641-61947660 | MS.gene54170:intron | 20.0% |
!!! | TTAGGGATATTTTTGTAATT+CGG | - | chr5.4:61950444-61950463 | MS.gene54170:CDS | 20.0% |
! | AAAATGAAAGATAGCGAAAT+TGG | + | chr5.4:61950770-61950789 | None:intergenic | 25.0% |
! | AAACTCATATAAAGGACATT+TGG | - | chr5.4:61947254-61947273 | MS.gene54170:CDS | 25.0% |
! | AAATGAAAGATAGCGAAATT+GGG | + | chr5.4:61950769-61950788 | None:intergenic | 25.0% |
! | AACATCATAATAGAATCTGA+AGG | + | chr5.4:61948071-61948090 | None:intergenic | 25.0% |
! | AACTTAAATATGGAAGATCT+TGG | - | chr5.4:61951250-61951269 | MS.gene54170:CDS | 25.0% |
! | AACTTTATCAACCACAAATT+TGG | + | chr5.4:61949451-61949470 | None:intergenic | 25.0% |
! | AATGAATTGACTATAGATGA+TGG | - | chr5.4:61951223-61951242 | MS.gene54170:CDS | 25.0% |
! | ACATCATAATAGAATCTGAA+GGG | + | chr5.4:61948070-61948089 | None:intergenic | 25.0% |
! | ACTAAAATTCGCTCTATTTA+TGG | + | chr5.4:61948208-61948227 | None:intergenic | 25.0% |
! | ACTATGTTAACCACTTAAAA+AGG | - | chr5.4:61949525-61949544 | MS.gene54170:intron | 25.0% |
! | AGGATGAAAAGAAAAGAAAA+AGG | + | chr5.4:61948248-61948267 | None:intergenic | 25.0% |
! | AGTAAAACTGACTAACTTAT+AGG | + | chr5.4:61949303-61949322 | None:intergenic | 25.0% |
! | ATTGAATAGACATAATGTAG+CGG | + | chr5.4:61948980-61948999 | None:intergenic | 25.0% |
! | CAAATCAAAAGAAATCTCTT+TGG | - | chr5.4:61947685-61947704 | MS.gene54170:intron | 25.0% |
! | CGCTAGTAATTATAATTGTT+TGG | - | chr5.4:61950639-61950658 | MS.gene54170:intron | 25.0% |
! | CTAAAATTCGCTCTATTTAT+GGG | + | chr5.4:61948207-61948226 | None:intergenic | 25.0% |
! | CTTTCTTATGTTCCTTAATT+AGG | - | chr5.4:61947729-61947748 | MS.gene54170:intron | 25.0% |
! | TAAAATTCGCTCTATTTATG+GGG | + | chr5.4:61948206-61948225 | None:intergenic | 25.0% |
! | TACAAACAAAAGACATGTTA+GGG | - | chr5.4:61950427-61950446 | MS.gene54170:CDS | 25.0% |
! | TCAAGAAGATTGTCTAAATT+TGG | - | chr5.4:61949548-61949567 | MS.gene54170:intron | 25.0% |
! | TCAATTATATCTACTCATCA+AGG | - | chr5.4:61947197-61947216 | MS.gene54170:CDS | 25.0% |
! | TCAGCTAAAGTTACAATTTA+AGG | + | chr5.4:61948726-61948745 | None:intergenic | 25.0% |
! | TCATGTATCAGAATTTAAAG+AGG | - | chr5.4:61946861-61946880 | MS.gene54170:CDS | 25.0% |
! | TCATTATGATACTTGAAGTA+TGG | - | chr5.4:61950536-61950555 | MS.gene54170:intron | 25.0% |
! | TCTGTTTATAATAACTAACG+TGG | - | chr5.4:61948308-61948327 | MS.gene54170:CDS | 25.0% |
! | TGATGGAAGAAACTTAAATA+TGG | - | chr5.4:61951240-61951259 | MS.gene54170:CDS | 25.0% |
! | TTAATCTAAACACTGGAAAA+GGG | + | chr5.4:61950255-61950274 | None:intergenic | 25.0% |
! | TTACAAACAAAAGACATGTT+AGG | - | chr5.4:61950426-61950445 | MS.gene54170:CDS | 25.0% |
! | TTTAATCTAAACACTGGAAA+AGG | + | chr5.4:61950256-61950275 | None:intergenic | 25.0% |
! | TTTATGTTCCAGAAATCAAT+TGG | - | chr5.4:61950151-61950170 | MS.gene54170:intron | 25.0% |
! | TTTCCAGTGTTTAGATTAAA+CGG | - | chr5.4:61950256-61950275 | MS.gene54170:intron | 25.0% |
! | TTTCGGTTTAAAAAAGCTAA+TGG | + | chr5.4:61948584-61948603 | None:intergenic | 25.0% |
! | TTTCTTCATCATCTTCTTTA+AGG | + | chr5.4:61947000-61947019 | None:intergenic | 25.0% |
!! | AATGTCCTTTATATGAGTTT+TGG | + | chr5.4:61947254-61947273 | None:intergenic | 25.0% |
!! | AGATGATGAAGAAATTTTTG+GGG | - | chr5.4:61947006-61947025 | MS.gene54170:CDS | 25.0% |
!! | CTCAAATACATGATTTTGTA+AGG | + | chr5.4:61948268-61948287 | None:intergenic | 25.0% |
!! | GAAGATGATGAAGAAATTTT+TGG | - | chr5.4:61947004-61947023 | MS.gene54170:CDS | 25.0% |
!! | TGAACAATTGATTCTAACAA+TGG | + | chr5.4:61947768-61947787 | None:intergenic | 25.0% |
!! | TTTCATTTTCACTGACATAA+GGG | + | chr5.4:61951039-61951058 | None:intergenic | 25.0% |
!! | TTTTTATCCTAAAATGTGTG+AGG | - | chr5.4:61950282-61950301 | MS.gene54170:CDS | 25.0% |
!!! | AACACACTTTGAAATTGAAT+TGG | - | chr5.4:61951281-61951300 | MS.gene54170:CDS | 25.0% |
!!! | ATTTTAAAAGCCAAAGAATC+AGG | - | chr5.4:61951388-61951407 | MS.gene54170:CDS | 25.0% |
!!! | CAATTTGGTCACTTTTTTTT+TGG | - | chr5.4:61947483-61947502 | MS.gene54170:CDS | 25.0% |
!!! | TGAAAACATTTGATTTTGCA+AGG | - | chr5.4:61948625-61948644 | MS.gene54170:intron | 25.0% |
!!! | TTCGCTATCTTTCATTTTTA+TGG | - | chr5.4:61950772-61950791 | MS.gene54170:intron | 25.0% |
!!! | TTGTTATTTGTTTTACAGAG+AGG | - | chr5.4:61947514-61947533 | MS.gene54170:CDS | 25.0% |
AACTTCTCTCAATGTCATAA+TGG | + | chr5.4:61949861-61949880 | None:intergenic | 30.0% | |
AAGACAGAGAAGGAAAATTA+TGG | + | chr5.4:61947371-61947390 | None:intergenic | 30.0% | |
AGAAACCTAAACATATAGAC+CGG | + | chr5.4:61949218-61949237 | None:intergenic | 30.0% | |
ATAAAATGACCGAAAATAGC+CGG | + | chr5.4:61950956-61950975 | None:intergenic | 30.0% | |
ATAAGGATCAACTCTTGAAA+CGG | + | chr5.4:61948823-61948842 | None:intergenic | 30.0% | |
ATAAGTAACACCTGATTCTT+TGG | + | chr5.4:61951401-61951420 | None:intergenic | 30.0% | |
ATAATGTTCACATGGAACTA+TGG | - | chr5.4:61950797-61950816 | MS.gene54170:intron | 30.0% | |
ATACAAAAACTAACACCTGA+TGG | + | chr5.4:61950997-61951016 | None:intergenic | 30.0% | |
ATAGTTCCATGTGAACATTA+TGG | + | chr5.4:61950798-61950817 | None:intergenic | 30.0% | |
CAATCTTCAATCATTGATGA+TGG | - | chr5.4:61947119-61947138 | MS.gene54170:CDS | 30.0% | |
CACACTTCTAGCAAAATATA+TGG | - | chr5.4:61950123-61950142 | MS.gene54170:intron | 30.0% | |
CATAACTATTCTACATGGAA+CGG | + | chr5.4:61948354-61948373 | None:intergenic | 30.0% | |
CCAATTTGATGTTGAAAACA+AGG | - | chr5.4:61950835-61950854 | MS.gene54170:intron | 30.0% | |
CTTACATGTTTCCTATTGTT+TGG | - | chr5.4:61950683-61950702 | MS.gene54170:intron | 30.0% | |
CTTAGAGATACAAACATGAT+GGG | - | chr5.4:61950210-61950229 | MS.gene54170:intron | 30.0% | |
GTATATACAATATATTCCGG+TGG | - | chr5.4:61949165-61949184 | MS.gene54170:CDS | 30.0% | |
GTATGCTAGACTAATATACT+TGG | + | chr5.4:61949724-61949743 | None:intergenic | 30.0% | |
GTCAATTCATTTGTTTGTTC+TGG | + | chr5.4:61951214-61951233 | None:intergenic | 30.0% | |
GTTCAATAGATCCAAACAAT+AGG | + | chr5.4:61950697-61950716 | None:intergenic | 30.0% | |
TAAACAGAAAGTTGACACTA+CGG | + | chr5.4:61948296-61948315 | None:intergenic | 30.0% | |
TATACTTCTTTGCTAGAAGT+TGG | - | chr5.4:61951547-61951566 | MS.gene54170:CDS | 30.0% | |
TCTGAACAATTTGTAGAACA+AGG | - | chr5.4:61946746-61946765 | MS.gene54170:CDS | 30.0% | |
TGGCTTAAAGTGAAAAATAG+TGG | + | chr5.4:61949953-61949972 | None:intergenic | 30.0% | |
TGTTCTACAAATTGTTCAGA+AGG | + | chr5.4:61946746-61946765 | None:intergenic | 30.0% | |
TTAAATATGGAAGATCTTGG+TGG | - | chr5.4:61951253-61951272 | MS.gene54170:CDS | 30.0% | |
TTAAGCAGCTTAAAATCCAA+AGG | + | chr5.4:61947171-61947190 | None:intergenic | 30.0% | |
TTCAGCCAAAACTCATATAA+AGG | - | chr5.4:61947246-61947265 | MS.gene54170:CDS | 30.0% | |
TTGTAAAAGCTATACCAAGA+TGG | + | chr5.4:61947541-61947560 | None:intergenic | 30.0% | |
TTTATCTGCTTATTCAACAG+AGG | - | chr5.4:61947885-61947904 | MS.gene54170:intron | 30.0% | |
! | ATAATGTAGCGGAATATGTT+CGG | + | chr5.4:61948969-61948988 | None:intergenic | 30.0% |
! | ATGGACAGCATAATTCTTTT+TGG | + | chr5.4:61948671-61948690 | None:intergenic | 30.0% |
! | ATTTTCAGTAATCTTGCTTC+CGG | - | chr5.4:61950926-61950945 | MS.gene54170:intron | 30.0% |
! | CTTTCATTTTCACTGACATA+AGG | + | chr5.4:61951040-61951059 | None:intergenic | 30.0% |
! | GTGTTTCTTTTCAATTCCTT+TGG | - | chr5.4:61947152-61947171 | MS.gene54170:CDS | 30.0% |
! | TACTTGTTGCACAAGTAAAA+GGG | - | chr5.4:61948137-61948156 | MS.gene54170:CDS | 30.0% |
! | TGTTTACCATTTTCATGTGA+TGG | - | chr5.4:61951322-61951341 | MS.gene54170:CDS | 30.0% |
! | TTACTTGTTGCACAAGTAAA+AGG | - | chr5.4:61948136-61948155 | MS.gene54170:CDS | 30.0% |
! | TTTTTCTGCACTCTCAATAA+AGG | - | chr5.4:61949673-61949692 | MS.gene54170:intron | 30.0% |
!! | ATCTTCTTGACCTTTTTAAG+TGG | + | chr5.4:61949538-61949557 | None:intergenic | 30.0% |
!! | CAGGTGTTACTTATATAGTT+GGG | - | chr5.4:61951407-61951426 | MS.gene54170:CDS | 30.0% |
!! | GTCTCATGTATCATTTTAGT+TGG | - | chr5.4:61949050-61949069 | MS.gene54170:CDS | 30.0% |
!! | TCAGGTGTTACTTATATAGT+TGG | - | chr5.4:61951406-61951425 | MS.gene54170:CDS | 30.0% |
!! | TGGTCTTGTAAAAAACTGAA+TGG | - | chr5.4:61948164-61948183 | MS.gene54170:CDS | 30.0% |
!! | TGTGGTTGATAAAGTTATGT+TGG | - | chr5.4:61949455-61949474 | MS.gene54170:intron | 30.0% |
!!! | AACTACTTTTCTTGGTTTGT+AGG | - | chr5.4:61950572-61950591 | MS.gene54170:intron | 30.0% |
!!! | ACTACTTTTCTTGGTTTGTA+GGG | - | chr5.4:61950573-61950592 | MS.gene54170:intron | 30.0% |
!!! | ATCATTGATGATGGTACTTT+TGG | - | chr5.4:61947128-61947147 | MS.gene54170:CDS | 30.0% |
!!! | CCTTGTTTTCAACATCAAAT+TGG | + | chr5.4:61950838-61950857 | None:intergenic | 30.0% |
AAAGCTAATGGTGTAAACAG+AGG | + | chr5.4:61948572-61948591 | None:intergenic | 35.0% | |
AAAGTGCACGATATACTTGT+CGG | + | chr5.4:61949193-61949212 | None:intergenic | 35.0% | |
AAATTTACCTGCATTCCATC+AGG | - | chr5.4:61950979-61950998 | MS.gene54170:intron | 35.0% | |
AACAATTTAATGCGCAGCAT+TGG | + | chr5.4:61950083-61950102 | None:intergenic | 35.0% | |
AATATCAGGTAGTTGATCAG+GGG | - | chr5.4:61948041-61948060 | MS.gene54170:intron | 35.0% | |
AATGCAAGAAAATGAGTACC+TGG | + | chr5.4:61946781-61946800 | None:intergenic | 35.0% | |
ATATAAGCCAAAATCAGGCA+GGG | + | chr5.4:61949811-61949830 | None:intergenic | 35.0% | |
ATCAACCACAAATTTGGAAG+TGG | + | chr5.4:61949445-61949464 | None:intergenic | 35.0% | |
ATCTGTGACATTGCTAATGA+TGG | + | chr5.4:61948690-61948709 | None:intergenic | 35.0% | |
ATGAGCAAGATGTTATCCTT+AGG | - | chr5.4:61950863-61950882 | MS.gene54170:intron | 35.0% | |
ATGTTAAGGTCATAGCTTAC+AGG | + | chr5.4:61948106-61948125 | None:intergenic | 35.0% | |
ATTAGACATCAAGACAGAGA+AGG | + | chr5.4:61947381-61947400 | None:intergenic | 35.0% | |
CAATATCAGGTAGTTGATCA+GGG | - | chr5.4:61948040-61948059 | MS.gene54170:intron | 35.0% | |
CAGAGAACCTGATATTATGT+TGG | - | chr5.4:61951516-61951535 | MS.gene54170:intron | 35.0% | |
CAGGTACAGAACTTTGTATA+AGG | + | chr5.4:61948840-61948859 | None:intergenic | 35.0% | |
CCATCATGTTTGTATCTCTA+AGG | + | chr5.4:61950212-61950231 | None:intergenic | 35.0% | |
CCTTAGAGATACAAACATGA+TGG | - | chr5.4:61950209-61950228 | MS.gene54170:intron | 35.0% | |
GAGAAGTGAGTATAATGCAA+AGG | + | chr5.4:61947812-61947831 | None:intergenic | 35.0% | |
GAGGCGTAATCAATATACTA+AGG | + | chr5.4:61950477-61950496 | None:intergenic | 35.0% | |
GCAGATAAATTCTCATCTGT+TGG | + | chr5.4:61947874-61947893 | None:intergenic | 35.0% | |
GCTACTTCCAACATAATATC+AGG | + | chr5.4:61951526-61951545 | None:intergenic | 35.0% | |
GCTTCTGCAGAAAAATAGTA+TGG | + | chr5.4:61949973-61949992 | None:intergenic | 35.0% | |
GGTTAGTGAAGTTACATTGA+TGG | + | chr5.4:61949380-61949399 | None:intergenic | 35.0% | |
TAAAATGACCGAAAATAGCC+GGG | + | chr5.4:61950955-61950974 | None:intergenic | 35.0% | |
TACTGAAATGAGACACGAAA+AGG | + | chr5.4:61948888-61948907 | None:intergenic | 35.0% | |
TAGCTCATTATCATCCAATG+TGG | - | chr5.4:61948500-61948519 | MS.gene54170:CDS | 35.0% | |
TATACAAGACCTCATTCTCA+GGG | - | chr5.4:61946966-61946985 | MS.gene54170:CDS | 35.0% | |
TCTTAAAGTGAATTCTTGCC+TGG | + | chr5.4:61949898-61949917 | None:intergenic | 35.0% | |
TGAACATGTCAGTAAAAACG+AGG | - | chr5.4:61948423-61948442 | MS.gene54170:intron | 35.0% | |
TGACCGTTTAATCTAAACAC+TGG | + | chr5.4:61950262-61950281 | None:intergenic | 35.0% | |
TGTTGTCACAAACATAACAG+TGG | + | chr5.4:61950609-61950628 | None:intergenic | 35.0% | |
TTATGGCCATAATGTTCACA+TGG | - | chr5.4:61950789-61950808 | MS.gene54170:intron | 35.0% | |
TTTACTAAACTGCGTTCAGT+AGG | - | chr5.4:61949317-61949336 | MS.gene54170:intron | 35.0% | |
TTTCTCCGGTCTATATGTTT+AGG | - | chr5.4:61949210-61949229 | MS.gene54170:CDS | 35.0% | |
! | ATGAAAGATTAGTCATCAGC+AGG | - | chr5.4:61951053-61951072 | MS.gene54170:intron | 35.0% |
! | CTTTTGTGTATCAGTGGTAT+TGG | - | chr5.4:61949143-61949162 | MS.gene54170:CDS | 35.0% |
! | GAGGTCTTGTATACATAAAG+AGG | + | chr5.4:61946959-61946978 | None:intergenic | 35.0% |
! | GGATGATAATGAGCTACAAA+TGG | + | chr5.4:61948496-61948515 | None:intergenic | 35.0% |
! | TCAGTATTTTCAGCAGTTTC+AGG | - | chr5.4:61948902-61948921 | MS.gene54170:intron | 35.0% |
! | TCATTTTCCCTAAATGTGTG+AGG | + | chr5.4:61950496-61950515 | None:intergenic | 35.0% |
! | TTCCTATGTGTTACTGTCTT+AGG | - | chr5.4:61949620-61949639 | MS.gene54170:intron | 35.0% |
! | TTTAGGTTTCTCAAAACCAC+TGG | - | chr5.4:61949227-61949246 | MS.gene54170:CDS | 35.0% |
! | TTTCTGCAGAAGCTGTATTT+TGG | - | chr5.4:61949980-61949999 | MS.gene54170:intron | 35.0% |
!! | ATTTTGGCCAGTTTTCATAG+TGG | - | chr5.4:61949996-61950015 | MS.gene54170:intron | 35.0% |
!! | CATAAAGAGGAGAAGTACTT+AGG | + | chr5.4:61946946-61946965 | None:intergenic | 35.0% |
!! | GGTTGATAAAGTTATGTTGG+TGG | - | chr5.4:61949458-61949477 | MS.gene54170:intron | 35.0% |
!! | TGTTCTTTGAAAAGCATCCT+AGG | - | chr5.4:61947944-61947963 | MS.gene54170:intron | 35.0% |
!! | TTCTTTGCTAGAAGTTGGTA+TGG | - | chr5.4:61951552-61951571 | MS.gene54170:CDS | 35.0% |
!!! | ATGTTTTCATTTTTGGTCCC+TGG | + | chr5.4:61948614-61948633 | None:intergenic | 35.0% |
!!! | TGATTTTTTTGCCTCTGCAT+AGG | + | chr5.4:61951437-61951456 | None:intergenic | 35.0% |
!!! | TGCCTGATTTTGGCTTATAT+GGG | - | chr5.4:61949811-61949830 | MS.gene54170:intron | 35.0% |
AAAGTGGCCACTATGAAAAC+TGG | + | chr5.4:61950006-61950025 | None:intergenic | 40.0% | |
AAATGGCATGAACATCAGCA+CGG | + | chr5.4:61948479-61948498 | None:intergenic | 40.0% | |
AAGTGAATTCTTGCCTGGTA+TGG | + | chr5.4:61949893-61949912 | None:intergenic | 40.0% | |
ACTCTAGCATACCAAAGTCT+TGG | - | chr5.4:61946905-61946924 | MS.gene54170:CDS | 40.0% | |
ACTGCTGATCTTTGTTCTGT+TGG | - | chr5.4:61947978-61947997 | MS.gene54170:intron | 40.0% | |
ACTTGCATGACAATTGGTGA+TGG | - | chr5.4:61948003-61948022 | MS.gene54170:intron | 40.0% | |
AGAACAAGGAATATCTCACC+AGG | - | chr5.4:61946760-61946779 | MS.gene54170:CDS | 40.0% | |
AGGATGGTCATATACCGAAA+CGG | + | chr5.4:61948868-61948887 | None:intergenic | 40.0% | |
AGTATATCGTGCACTTTCTC+CGG | - | chr5.4:61949196-61949215 | MS.gene54170:CDS | 40.0% | |
AGTTTCTACAAAGCCATACC+AGG | - | chr5.4:61949877-61949896 | MS.gene54170:intron | 40.0% | |
ATATACCGAAACGGACAAAC+AGG | + | chr5.4:61948859-61948878 | None:intergenic | 40.0% | |
ATGGTTGTCATTAAGTGGAG+TGG | - | chr5.4:61949259-61949278 | MS.gene54170:CDS | 40.0% | |
ATGTGTTCCATGATGCTGAA+TGG | + | chr5.4:61949084-61949103 | None:intergenic | 40.0% | |
CAAAGTCTTGGAGTAGTCTA+TGG | - | chr5.4:61946917-61946936 | MS.gene54170:CDS | 40.0% | |
CAACTGTGACAGCTAAACAA+AGG | + | chr5.4:61950188-61950207 | None:intergenic | 40.0% | |
CACCCATATAAGCCAAAATC+AGG | + | chr5.4:61949816-61949835 | None:intergenic | 40.0% | |
CACCTAAGACAGTAACACAT+AGG | + | chr5.4:61949625-61949644 | None:intergenic | 40.0% | |
CATAGACTACTCCAAGACTT+TGG | + | chr5.4:61946919-61946938 | None:intergenic | 40.0% | |
CATATAAGCCAAAATCAGGC+AGG | + | chr5.4:61949812-61949831 | None:intergenic | 40.0% | |
CATGATGCTGAATGGAGAAA+AGG | + | chr5.4:61949076-61949095 | None:intergenic | 40.0% | |
CGAAACATGTAGAACTCCTT+CGG | + | chr5.4:61951085-61951104 | None:intergenic | 40.0% | |
CGAAGGAGTTCTACATGTTT+CGG | - | chr5.4:61951083-61951102 | MS.gene54170:intron | 40.0% | |
CGTGGCATAACTATTCTACA+TGG | + | chr5.4:61948359-61948378 | None:intergenic | 40.0% | |
CTGCAATGACTCGACTTTAT+AGG | + | chr5.4:61951368-61951387 | None:intergenic | 40.0% | |
CTGCTGATCTTTGTTCTGTT+GGG | - | chr5.4:61947979-61947998 | MS.gene54170:intron | 40.0% | |
GAAATGAGACACGAAAAGGA+TGG | + | chr5.4:61948884-61948903 | None:intergenic | 40.0% | |
GAAGGATGGTTGTCATTAAG+TGG | - | chr5.4:61949254-61949273 | MS.gene54170:CDS | 40.0% | |
GAGACAATGTATGCTGACAT+GGG | - | chr5.4:61949647-61949666 | MS.gene54170:intron | 40.0% | |
GATCAACTACCTGATATTGC+AGG | + | chr5.4:61948039-61948058 | None:intergenic | 40.0% | |
GATTACGCCTCACACATTTA+GGG | - | chr5.4:61950486-61950505 | MS.gene54170:CDS | 40.0% | |
GCAATATCAGGTAGTTGATC+AGG | - | chr5.4:61948039-61948058 | MS.gene54170:intron | 40.0% | |
GCATGTCTTTGTAACCGTAT+CGG | + | chr5.4:61951117-61951136 | None:intergenic | 40.0% | |
GGGTGCTTTCATTTATCTTC+TGG | - | chr5.4:61947026-61947045 | MS.gene54170:CDS | 40.0% | |
GTATACAAGACCTCATTCTC+AGG | - | chr5.4:61946965-61946984 | MS.gene54170:CDS | 40.0% | |
GTCATGTCTGCTGATGATAA+TGG | - | chr5.4:61947088-61947107 | MS.gene54170:CDS | 40.0% | |
GTGTGAACAATCTTCACTCT+AGG | + | chr5.4:61950108-61950127 | None:intergenic | 40.0% | |
TAAAAACGAGGAGATAGACG+TGG | - | chr5.4:61948435-61948454 | MS.gene54170:CDS | 40.0% | |
TACTTGTGCAACAAGTAACC+CGG | + | chr5.4:61948134-61948153 | None:intergenic | 40.0% | |
TATGACCTTAACATCAGCTC+CGG | - | chr5.4:61948112-61948131 | MS.gene54170:CDS | 40.0% | |
TCTTGGCCATCACATGAAAA+TGG | + | chr5.4:61951331-61951350 | None:intergenic | 40.0% | |
TGATTACGCCTCACACATTT+AGG | - | chr5.4:61950485-61950504 | MS.gene54170:CDS | 40.0% | |
TGCACAAGTAAAAGGGAGTT+TGG | - | chr5.4:61948144-61948163 | MS.gene54170:CDS | 40.0% | |
TTATCCTTAGGACCATGCTT+AGG | - | chr5.4:61950875-61950894 | MS.gene54170:intron | 40.0% | |
TTGGGAACTTGCATGACAAT+TGG | - | chr5.4:61947997-61948016 | MS.gene54170:intron | 40.0% | |
TTGTTCACTTATTGCACTGC+AGG | - | chr5.4:61947781-61947800 | MS.gene54170:intron | 40.0% | |
! | AGATTAGTCATCAGCAGGAT+TGG | - | chr5.4:61951058-61951077 | MS.gene54170:intron | 40.0% |
! | AGTATATCCCTGCCTGATTT+TGG | - | chr5.4:61949801-61949820 | MS.gene54170:intron | 40.0% |
! | ATGTGTTACTGTCTTAGGTG+TGG | - | chr5.4:61949625-61949644 | MS.gene54170:intron | 40.0% |
! | CTTTGTTTAGCTGTCACAGT+TGG | - | chr5.4:61950186-61950205 | MS.gene54170:intron | 40.0% |
! | CTTTTCTCCATTCAGCATCA+TGG | - | chr5.4:61949074-61949093 | MS.gene54170:CDS | 40.0% |
! | GACAGAACCTCACACATTTT+AGG | + | chr5.4:61950292-61950311 | None:intergenic | 40.0% |
! | TCATCTGTTGGTTGCTGATT+TGG | + | chr5.4:61947862-61947881 | None:intergenic | 40.0% |
! | TTTTACAGAGAGGACCATCT+TGG | - | chr5.4:61947524-61947543 | MS.gene54170:CDS | 40.0% |
!! | AACATGATGGGTCATGCATA+TGG | - | chr5.4:61950222-61950241 | MS.gene54170:intron | 40.0% |
!! | TCTGCTGATGATAATGGAGA+AGG | - | chr5.4:61947094-61947113 | MS.gene54170:CDS | 40.0% |
!!! | CTGCCTGATTTTGGCTTATA+TGG | - | chr5.4:61949810-61949829 | MS.gene54170:intron | 40.0% |
!!! | CTTTTCTTGGTTTGTAGGGT+TGG | - | chr5.4:61950577-61950596 | MS.gene54170:intron | 40.0% |
!!! | GATTTTGGCTTATATGGGTG+AGG | - | chr5.4:61949816-61949835 | MS.gene54170:intron | 40.0% |
!!! | TCCAATGTGGTTTTGACATG+TGG | - | chr5.4:61948513-61948532 | MS.gene54170:CDS | 40.0% |
AAAAGCCATGCTGCAACAAC+TGG | + | chr5.4:61949128-61949147 | None:intergenic | 45.0% | |
AAAGCCATGCTGCAACAACT+GGG | + | chr5.4:61949127-61949146 | None:intergenic | 45.0% | |
AACAACTGGGGCAAACATGA+AGG | + | chr5.4:61949114-61949133 | None:intergenic | 45.0% | |
AAGCATCCTAGGTTCCAGAA+AGG | - | chr5.4:61947955-61947974 | MS.gene54170:intron | 45.0% | |
ACACACCATCATTTCCACGT+AGG | + | chr5.4:61948548-61948567 | None:intergenic | 45.0% | |
ACTAAACTGCGTTCAGTAGG+TGG | - | chr5.4:61949320-61949339 | MS.gene54170:intron | 45.0% | |
ACTAACACCTGATGGAATGC+AGG | + | chr5.4:61950989-61951008 | None:intergenic | 45.0% | |
ATGACCTTAACATCAGCTCC+GGG | - | chr5.4:61948113-61948132 | MS.gene54170:CDS | 45.0% | |
CAAAGATCAGCAGTCCTTTC+TGG | + | chr5.4:61947972-61947991 | None:intergenic | 45.0% | |
CAGAAAGTTGACACTACGGA+CGG | + | chr5.4:61948292-61948311 | None:intergenic | 45.0% | |
CAGAGGATTCTGCTGATACA+TGG | - | chr5.4:61947902-61947921 | MS.gene54170:intron | 45.0% | |
CCACAAATTTGGAAGTGGTC+TGG | + | chr5.4:61949440-61949459 | None:intergenic | 45.0% | |
CCAGACCACTTCCAAATTTG+TGG | - | chr5.4:61949437-61949456 | MS.gene54170:intron | 45.0% | |
CTGTACCTGTTTGTCCGTTT+CGG | - | chr5.4:61948851-61948870 | MS.gene54170:intron | 45.0% | |
GCCACATGTCAAAACCACAT+TGG | + | chr5.4:61948517-61948536 | None:intergenic | 45.0% | |
GCTCAATTTCCCTGAGAATG+AGG | + | chr5.4:61946978-61946997 | None:intergenic | 45.0% | |
GGAGACAATGTATGCTGACA+TGG | - | chr5.4:61949646-61949665 | MS.gene54170:intron | 45.0% | |
GGAGTGGTGCTTTCAATAAC+AGG | - | chr5.4:61949275-61949294 | MS.gene54170:intron | 45.0% | |
GTCATCCTACGTGGAAATGA+TGG | - | chr5.4:61948540-61948559 | MS.gene54170:intron | 45.0% | |
GTGATCACTCCTGCAATATC+AGG | - | chr5.4:61948027-61948046 | MS.gene54170:intron | 45.0% | |
TAAACCGAAAGTTGACGCCA+GGG | - | chr5.4:61948594-61948613 | MS.gene54170:intron | 45.0% | |
TAATCTTGCTTCCGGTATCC+CGG | - | chr5.4:61950934-61950953 | MS.gene54170:intron | 45.0% | |
TCCTACAACAGCAGCAAAAG+TGG | + | chr5.4:61950022-61950041 | None:intergenic | 45.0% | |
TGCGTTCAGTAGGTGGTTAA+TGG | - | chr5.4:61949327-61949346 | MS.gene54170:intron | 45.0% | |
TTAAACCGAAAGTTGACGCC+AGG | - | chr5.4:61948593-61948612 | MS.gene54170:intron | 45.0% | |
TTCACTTATTGCACTGCAGG+AGG | - | chr5.4:61947784-61947803 | MS.gene54170:intron | 45.0% | |
TTGGCTTACTGTCATGGAGT+TGG | + | chr5.4:61948946-61948965 | None:intergenic | 45.0% | |
! | AAACCACTGGCATTGAAGGA+TGG | - | chr5.4:61949240-61949259 | MS.gene54170:CDS | 45.0% |
! | CTCAAAACCACTGGCATTGA+AGG | - | chr5.4:61949236-61949255 | MS.gene54170:CDS | 45.0% |
! | CTGAAAATGAGACCGATTCC+CGG | + | chr5.4:61950914-61950933 | None:intergenic | 45.0% |
! | GCATGGCTTTTGTGTATCAG+TGG | - | chr5.4:61949137-61949156 | MS.gene54170:CDS | 45.0% |
! | TGAAAATGAGACCGATTCCC+GGG | + | chr5.4:61950913-61950932 | None:intergenic | 45.0% |
! | TGTAGCGGAATATGTTCGGT+TGG | + | chr5.4:61948965-61948984 | None:intergenic | 45.0% |
! | TTTCGGTGCATTGTCCGATA+CGG | - | chr5.4:61951100-61951119 | MS.gene54170:intron | 45.0% |
!! | GATATACTTGTCGGTTCCAC+CGG | + | chr5.4:61949184-61949203 | None:intergenic | 45.0% |
AAGCCATGCTGCAACAACTG+GGG | + | chr5.4:61949126-61949145 | None:intergenic | 50.0% | |
ACCGAAAATAGCCGGGATAC+CGG | + | chr5.4:61950948-61950967 | None:intergenic | 50.0% | |
ACGTGTCAACACCACCACAT+CGG | - | chr5.4:61948376-61948395 | MS.gene54170:intron | 50.0% | |
AGGACTCGTCTCGAAGTTCT+TGG | + | chr5.4:61951348-61951367 | None:intergenic | 50.0% | |
AGTTGGGCATTCCTATGCAG+AGG | - | chr5.4:61951423-61951442 | MS.gene54170:CDS | 50.0% | |
CAACCATCCTTCAATGCCAG+TGG | + | chr5.4:61949246-61949265 | None:intergenic | 50.0% | |
CATGCCTAAGCATGGTCCTA+AGG | + | chr5.4:61950882-61950901 | None:intergenic | 50.0% | |
CTTAGGACCATGCTTAGGCA+TGG | - | chr5.4:61950880-61950899 | MS.gene54170:intron | 50.0% | |
GTAACCCGGAGCTGATGTTA+AGG | + | chr5.4:61948120-61948139 | None:intergenic | 50.0% | |
GTCTGCAAAATCCCTGAAGG+CGG | - | chr5.4:61950737-61950756 | MS.gene54170:intron | 50.0% | |
TCTGCAAAATCCCTGAAGGC+GGG | - | chr5.4:61950738-61950757 | MS.gene54170:intron | 50.0% | |
TGTGGCATTGTCATCCTACG+TGG | - | chr5.4:61948531-61948550 | MS.gene54170:intron | 50.0% | |
! | TGTGTCACTATCACCCGATG+TGG | + | chr5.4:61948393-61948412 | None:intergenic | 50.0% |
!! | AGCAGTCCTTTCTGGAACCT+AGG | + | chr5.4:61947964-61947983 | None:intergenic | 50.0% |
!! | GTTCGGTTGGCTTACTGTCA+TGG | + | chr5.4:61948952-61948971 | None:intergenic | 50.0% |
!! | TCCGGTATCCCGGCTATTTT+CGG | - | chr5.4:61950944-61950963 | MS.gene54170:intron | 50.0% |
!!! | GCCACTTTTGCTGCTGTTGT+AGG | - | chr5.4:61950018-61950037 | MS.gene54170:intron | 50.0% |
ACACGGACCATGCCTAAGCA+TGG | + | chr5.4:61950890-61950909 | None:intergenic | 55.0% | |
CGTGGCATATCAGCTCCATG+TGG | - | chr5.4:61948453-61948472 | MS.gene54170:CDS | 55.0% | |
CGTGTCAACACCACCACATC+GGG | - | chr5.4:61948377-61948396 | MS.gene54170:intron | 55.0% | |
GTCACTATCACCCGATGTGG+TGG | + | chr5.4:61948390-61948409 | None:intergenic | 55.0% | |
TGAACATCAGCACGGCCACA+TGG | + | chr5.4:61948471-61948490 | None:intergenic | 55.0% | |
TGGTCCCTGGCGTCAACTTT+CGG | + | chr5.4:61948601-61948620 | None:intergenic | 55.0% | |
TTGCCCCAGTTGTTGCAGCA+TGG | - | chr5.4:61949120-61949139 | MS.gene54170:CDS | 55.0% | |
!! | CATCAGCAGGATTGGTCCGA+AGG | - | chr5.4:61951066-61951085 | MS.gene54170:intron | 55.0% |
!! | GATGTGGTGGTGTTGACACG+TGG | + | chr5.4:61948377-61948396 | None:intergenic | 55.0% |
ATGGTCCGTGTCCCGGGAAT+CGG | - | chr5.4:61950899-61950918 | MS.gene54170:intron | 60.0% | |
ATTGGGATCCACCCGCCTTC+AGG | + | chr5.4:61950752-61950771 | None:intergenic | 60.0% | |
CTTAGGCATGGTCCGTGTCC+CGG | - | chr5.4:61950892-61950911 | MS.gene54170:intron | 60.0% | |
GCAAAATCCCTGAAGGCGGG+TGG | - | chr5.4:61950741-61950760 | MS.gene54170:intron | 60.0% | |
TTAGGCATGGTCCGTGTCCC+GGG | - | chr5.4:61950893-61950912 | MS.gene54170:intron | 60.0% | |
TTGGGATCCACCCGCCTTCA+GGG | + | chr5.4:61950751-61950770 | None:intergenic | 60.0% | |
! | TGAGACCGATTCCCGGGACA+CGG | + | chr5.4:61950907-61950926 | None:intergenic | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr5.4 | gene | 61946737 | 61951588 | 61946737 | ID=MS.gene54170 |
chr5.4 | mRNA | 61946737 | 61951588 | 61946737 | ID=MS.gene54170.t1;Parent=MS.gene54170 |
chr5.4 | exon | 61951544 | 61951588 | 61951544 | ID=MS.gene54170.t1.exon1;Parent=MS.gene54170.t1 |
chr5.4 | CDS | 61951544 | 61951588 | 61951544 | ID=cds.MS.gene54170.t1;Parent=MS.gene54170.t1 |
chr5.4 | exon | 61951210 | 61951453 | 61951210 | ID=MS.gene54170.t1.exon2;Parent=MS.gene54170.t1 |
chr5.4 | CDS | 61951210 | 61951453 | 61951210 | ID=cds.MS.gene54170.t1;Parent=MS.gene54170.t1 |
chr5.4 | exon | 61950277 | 61950522 | 61950277 | ID=MS.gene54170.t1.exon3;Parent=MS.gene54170.t1 |
chr5.4 | CDS | 61950277 | 61950522 | 61950277 | ID=cds.MS.gene54170.t1;Parent=MS.gene54170.t1 |
chr5.4 | exon | 61949369 | 61949419 | 61949369 | ID=MS.gene54170.t1.exon4;Parent=MS.gene54170.t1 |
chr5.4 | CDS | 61949369 | 61949419 | 61949369 | ID=cds.MS.gene54170.t1;Parent=MS.gene54170.t1 |
chr5.4 | exon | 61949029 | 61949289 | 61949029 | ID=MS.gene54170.t1.exon5;Parent=MS.gene54170.t1 |
chr5.4 | CDS | 61949029 | 61949289 | 61949029 | ID=cds.MS.gene54170.t1;Parent=MS.gene54170.t1 |
chr5.4 | exon | 61948631 | 61948683 | 61948631 | ID=MS.gene54170.t1.exon6;Parent=MS.gene54170.t1 |
chr5.4 | CDS | 61948631 | 61948683 | 61948631 | ID=cds.MS.gene54170.t1;Parent=MS.gene54170.t1 |
chr5.4 | exon | 61948427 | 61948541 | 61948427 | ID=MS.gene54170.t1.exon7;Parent=MS.gene54170.t1 |
chr5.4 | CDS | 61948427 | 61948541 | 61948427 | ID=cds.MS.gene54170.t1;Parent=MS.gene54170.t1 |
chr5.4 | exon | 61948082 | 61948336 | 61948082 | ID=MS.gene54170.t1.exon8;Parent=MS.gene54170.t1 |
chr5.4 | CDS | 61948082 | 61948336 | 61948082 | ID=cds.MS.gene54170.t1;Parent=MS.gene54170.t1 |
chr5.4 | exon | 61946737 | 61947593 | 61946737 | ID=MS.gene54170.t1.exon9;Parent=MS.gene54170.t1 |
chr5.4 | CDS | 61946737 | 61947593 | 61946737 | ID=cds.MS.gene54170.t1;Parent=MS.gene54170.t1 |
Gene Sequence |
Protein sequence |