AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene54170


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene54170.t1 MTR_5g071860 90.584 754 25 1 1 708 1 754 0.0 1400
MS.gene54170.t1 MTR_5g071630 87.330 734 33 4 21 708 6 725 0.0 1290
MS.gene54170.t1 MTR_5g071827 89.790 666 22 1 89 708 1 666 0.0 1229
MS.gene54170.t1 MTR_6g033165 50.591 761 298 4 26 708 59 819 0.0 780
MS.gene54170.t1 MTR_5g034500 48.656 781 320 6 8 708 3 782 0.0 762
MS.gene54170.t1 MTR_6g007697 49.612 774 317 7 8 708 3 776 0.0 759
MS.gene54170.t1 MTR_3g094090 48.912 781 305 11 18 706 14 792 0.0 744
MS.gene54170.t1 MTR_8g099090 43.955 794 357 8 1 708 1 792 0.0 667
MS.gene54170.t1 MTR_2g438150 43.409 751 362 6 18 708 42 789 0.0 643
MS.gene54170.t1 MTR_2g438150 43.432 746 359 6 18 703 42 784 0.0 639
MS.gene54170.t1 MTR_4g094660 43.542 751 359 6 18 708 42 787 0.0 622
MS.gene54170.t1 MTR_8g063840 42.277 764 367 10 15 708 81 840 0.0 592
MS.gene54170.t1 MTR_7g108480 38.177 757 393 9 2 708 42 773 0.0 555
MS.gene54170.t1 MTR_2g008820 37.403 770 404 6 11 708 86 849 0.0 555
MS.gene54170.t1 MTR_2g438160 47.611 565 247 2 34 552 58 619 0.0 550
MS.gene54170.t1 MTR_8g107510 40.260 770 363 15 24 705 19 779 0.0 549
MS.gene54170.t1 MTR_4g099260 38.076 759 386 10 26 708 65 815 0.0 538
MS.gene54170.t1 MTR_3g094090 45.395 608 240 9 190 706 1 607 0.0 532
MS.gene54170.t1 MTR_8g063900 37.032 748 366 9 13 708 51 745 3.71e-174 516
MS.gene54170.t1 MTR_8g022130 38.630 730 377 11 26 708 61 766 2.77e-173 515
MS.gene54170.t1 MTR_5g070670 36.434 774 406 8 11 708 86 849 4.54e-167 501
MS.gene54170.t1 MTR_8g088200 36.316 760 407 9 19 708 30 782 1.26e-165 496
MS.gene54170.t1 MTR_4g094660 42.123 603 287 5 166 708 1 601 1.01e-160 477
MS.gene54170.t1 MTR_5g034590 36.864 236 130 4 424 659 133 349 8.40e-48 173
MS.gene54170.t1 MTR_5g034590 45.349 86 42 1 88 168 5 90 1.16e-13 73.6
MS.gene54170.t1 MTR_8g022160 52.663 169 72 4 25 192 60 221 2.09e-46 166
MS.gene54170.t1 MTR_1g029310 32.540 126 78 2 176 301 12 130 7.15e-17 78.2
MS.gene54170.t1 MTR_6g045057 32.051 156 99 3 181 333 8 159 2.99e-11 64.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene54170.t1 AT2G30070 63.660 754 186 3 1 708 1 712 0.0 993
MS.gene54170.t1 AT2G30070 60.032 633 165 3 122 708 2 592 0.0 785
MS.gene54170.t1 AT1G70300 50.318 785 301 10 8 708 3 782 0.0 763
MS.gene54170.t1 AT3G02050 49.049 789 321 5 1 708 1 789 0.0 750
MS.gene54170.t1 AT2G40540 48.072 778 315 6 18 706 15 792 0.0 743
MS.gene54170.t1 AT2G40540 48.072 778 315 6 18 706 15 792 0.0 743
MS.gene54170.t1 AT2G40540 48.072 778 315 6 18 706 15 792 0.0 743
MS.gene54170.t1 AT2G40540 48.072 778 315 6 18 706 15 792 0.0 743
MS.gene54170.t1 AT2G40540 48.072 778 315 6 18 706 15 792 0.0 743
MS.gene54170.t1 AT5G14880 50.000 778 310 9 10 708 4 781 0.0 743
MS.gene54170.t1 AT4G23640 44.761 773 344 6 18 708 4 775 0.0 682
MS.gene54170.t1 AT4G19960 43.941 751 344 6 30 708 62 807 0.0 619
MS.gene54170.t1 AT1G31120 43.145 744 342 6 34 708 65 796 0.0 613
MS.gene54170.t1 AT1G60160 41.799 756 380 10 11 708 74 827 0.0 608
MS.gene54170.t1 AT2G35060 42.838 740 345 7 34 708 66 792 0.0 607
MS.gene54170.t1 AT2G35060 42.838 740 345 7 34 708 66 792 0.0 607
MS.gene54170.t1 AT2G35060 42.838 740 345 7 34 708 66 792 0.0 607
MS.gene54170.t1 AT4G19960 42.471 777 344 7 30 708 62 833 0.0 606
MS.gene54170.t1 AT2G35060 42.780 741 345 8 34 708 66 793 0.0 602
MS.gene54170.t1 AT4G13420 38.482 764 403 10 2 708 32 785 0.0 568
MS.gene54170.t1 AT5G09400 37.597 774 402 8 11 708 90 858 5.36e-175 522
MS.gene54170.t1 AT4G19960 39.505 767 371 11 30 708 62 823 1.73e-174 520
MS.gene54170.t1 AT4G33530 38.262 771 397 10 11 708 91 855 1.83e-174 521
MS.gene54170.t1 AT4G19960 42.564 585 262 5 196 708 4 586 2.29e-158 470
MS.gene54170.t1 AT4G33530 36.971 614 319 7 163 708 14 627 1.71e-136 416

Find 132 sgRNAs with CRISPR-Local

Find 306 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTCTTCATCATCTTCTTTA+AGG 0.071012 5.4:+61951306 None:intergenic
TATTCCAAATTTCTTTAAAA+TGG 0.164431 5.4:+61946842 None:intergenic
AGTATATCCCTGCCTGATTT+TGG 0.190519 5.4:-61948502 MS.gene54170:CDS
AAAATGAAAGATAGCGAAAT+TGG 0.192897 5.4:+61947536 None:intergenic
GTCAATTCATTTGTTTGTTC+TGG 0.193129 5.4:+61947092 None:intergenic
ATTAATATCCAATTGATTTC+TGG 0.209276 5.4:+61948144 None:intergenic
CAAAGATCAGCAGTCCTTTC+TGG 0.213735 5.4:+61950334 None:intergenic
TCATCTGTTGGTTGCTGATT+TGG 0.217408 5.4:+61950444 None:intergenic
GGGTGCTTTCATTTATCTTC+TGG 0.244227 5.4:-61951277 MS.gene54170:CDS
ATAAGTAACACCTGATTCTT+TGG 0.245477 5.4:+61946905 None:intergenic
CTGCAATGACTCGACTTTAT+AGG 0.258661 5.4:+61946938 None:intergenic
TTTCTGCAGAAGCTGTATTT+TGG 0.274753 5.4:-61948323 MS.gene54170:intron
ATTGGGATCCACCCGCCTTC+AGG 0.306821 5.4:+61947554 None:intergenic
TTTCTCCGGTCTATATGTTT+AGG 0.315964 5.4:-61949093 MS.gene54170:CDS
AAAAGCCATGCTGCAACAAC+TGG 0.319980 5.4:+61949178 None:intergenic
TCTTGGCCATCACATGAAAA+TGG 0.322011 5.4:+61946975 None:intergenic
CTGCTGATCTTTGTTCTGTT+GGG 0.346699 5.4:-61950324 MS.gene54170:CDS
AACACACTTTGAAATTGAAT+TGG 0.347433 5.4:-61947022 MS.gene54170:CDS
CCATCATGTTTGTATCTCTA+AGG 0.349905 5.4:+61948094 None:intergenic
CACACTTCTAGCAAAATATA+TGG 0.357605 5.4:-61948180 MS.gene54170:CDS
AGGACTCGTCTCGAAGTTCT+TGG 0.362162 5.4:+61946958 None:intergenic
ATAATGTTCACATGGAACTA+TGG 0.362609 5.4:-61947506 MS.gene54170:CDS
CTCAAAACCACTGGCATTGA+AGG 0.371128 5.4:-61949067 MS.gene54170:CDS
TGATGGAAGAAACTTAAATA+TGG 0.373743 5.4:-61947063 MS.gene54170:CDS
CGAAGGAGTTCTACATGTTT+CGG 0.379521 5.4:-61947220 MS.gene54170:CDS
GGAGTGGTGCTTTCAATAAC+AGG 0.385254 5.4:-61949028 MS.gene54170:intron
CAAAGTCTTGGAGTAGTCTA+TGG 0.389439 5.4:-61951386 MS.gene54170:CDS
TCAGGTGTTACTTATATAGT+TGG 0.390413 5.4:-61946897 MS.gene54170:CDS
TTTATGTTCCAGAAATCAAT+TGG 0.391774 5.4:-61948152 MS.gene54170:CDS
ATAGTTCCATGTGAACATTA+TGG 0.393280 5.4:+61947508 None:intergenic
AACTTCTCTCAATGTCATAA+TGG 0.400991 5.4:+61948445 None:intergenic
GCTACTTCCAACATAATATC+AGG 0.404494 5.4:+61946780 None:intergenic
ATGGTCCGTGTCCCGGGAAT+CGG 0.404996 5.4:-61947404 MS.gene54170:CDS
GTGATCACTCCTGCAATATC+AGG 0.405182 5.4:-61950276 MS.gene54170:intron
TATACTTCTTTGCTAGAAGT+TGG 0.411569 5.4:-61946756 MS.gene54170:CDS
CTTAGGCATGGTCCGTGTCC+CGG 0.418333 5.4:-61947411 MS.gene54170:CDS
ACTGCTGATCTTTGTTCTGT+TGG 0.427972 5.4:-61950325 MS.gene54170:CDS
AAAGTGGCCACTATGAAAAC+TGG 0.429133 5.4:+61948300 None:intergenic
CACCCATATAAGCCAAAATC+AGG 0.430258 5.4:+61948490 None:intergenic
CTGAAAATGAGACCGATTCC+CGG 0.431566 5.4:+61947392 None:intergenic
ACCGAAAATAGCCGGGATAC+CGG 0.432386 5.4:+61947358 None:intergenic
AAGTGAATTCTTGCCTGGTA+TGG 0.436212 5.4:+61948413 None:intergenic
GTATACAAGACCTCATTCTC+AGG 0.441568 5.4:-61951338 MS.gene54170:CDS
TGTTCTTTGAAAAGCATCCT+AGG 0.448299 5.4:-61950359 MS.gene54170:CDS
AAATTTACCTGCATTCCATC+AGG 0.449762 5.4:-61947324 MS.gene54170:CDS
AACATGATGGGTCATGCATA+TGG 0.455340 5.4:-61948081 MS.gene54170:intron
GATCAACTACCTGATATTGC+AGG 0.462951 5.4:+61950267 None:intergenic
TTGGGATCCACCCGCCTTCA+GGG 0.465191 5.4:+61947555 None:intergenic
GTCATGTCTGCTGATGATAA+TGG 0.466473 5.4:-61951215 MS.gene54170:CDS
AACAATTTAATGCGCAGCAT+TGG 0.467070 5.4:+61948223 None:intergenic
TTAGGCATGGTCCGTGTCCC+GGG 0.472505 5.4:-61947410 MS.gene54170:CDS
CAGGTGTTACTTATATAGTT+GGG 0.474382 5.4:-61946896 MS.gene54170:CDS
TTGGTATATACAATATATTC+CGG 0.475208 5.4:-61949141 MS.gene54170:CDS
GATATACTTGTCGGTTCCAC+CGG 0.475794 5.4:+61949122 None:intergenic
GAAGGATGGTTGTCATTAAG+TGG 0.476467 5.4:-61949049 MS.gene54170:CDS
AAATGAAAGATAGCGAAATT+GGG 0.479735 5.4:+61947537 None:intergenic
TTCTTTGCTAGAAGTTGGTA+TGG 0.480280 5.4:-61946751 MS.gene54170:CDS
AGTATATCGTGCACTTTCTC+CGG 0.482721 5.4:-61949107 MS.gene54170:CDS
AGATTAGTCATCAGCAGGAT+TGG 0.484310 5.4:-61947245 MS.gene54170:CDS
AACTTAAATATGGAAGATCT+TGG 0.484592 5.4:-61947053 MS.gene54170:CDS
TGAAAATGAGACCGATTCCC+GGG 0.487702 5.4:+61947393 None:intergenic
GTTCGGTTGGCTTACTGTCA+TGG 0.488966 5.4:+61949354 None:intergenic
GCAGATAAATTCTCATCTGT+TGG 0.490212 5.4:+61950432 None:intergenic
CTTTGTTTAGCTGTCACAGT+TGG 0.490283 5.4:-61948117 MS.gene54170:CDS
TTGGGAACTTGCATGACAAT+TGG 0.496346 5.4:-61950306 MS.gene54170:CDS
CATGATGCTGAATGGAGAAA+AGG 0.497785 5.4:+61949230 None:intergenic
TCCTACAACAGCAGCAAAAG+TGG 0.499235 5.4:+61948284 None:intergenic
ATAAAATGACCGAAAATAGC+CGG 0.499251 5.4:+61947350 None:intergenic
TTGGCTTACTGTCATGGAGT+TGG 0.503361 5.4:+61949360 None:intergenic
TGTTCTACAAATTGTTCAGA+AGG 0.507808 5.4:+61951560 None:intergenic
ATGAGCAAGATGTTATCCTT+AGG 0.509044 5.4:-61947440 MS.gene54170:CDS
CAGAGGATTCTGCTGATACA+TGG 0.509581 5.4:-61950401 MS.gene54170:CDS
AATGAATTGACTATAGATGA+TGG 0.510618 5.4:-61947080 MS.gene54170:CDS
TTTAGGTTTCTCAAAACCAC+TGG 0.512735 5.4:-61949076 MS.gene54170:CDS
CGAAACATGTAGAACTCCTT+CGG 0.514885 5.4:+61947221 None:intergenic
TAATCTTGCTTCCGGTATCC+CGG 0.517669 5.4:-61947369 MS.gene54170:CDS
CAGAGAACCTGATATTATGT+TGG 0.518058 5.4:-61946787 MS.gene54170:CDS
ACTCTAGCATACCAAAGTCT+TGG 0.519686 5.4:-61951398 MS.gene54170:CDS
CATAGACTACTCCAAGACTT+TGG 0.520654 5.4:+61951387 None:intergenic
GAGGTCTTGTATACATAAAG+AGG 0.520785 5.4:+61951347 None:intergenic
TCATGTATCAGAATTTAAAG+AGG 0.520819 5.4:-61951442 MS.gene54170:intron
CATAAAGAGGAGAAGTACTT+AGG 0.523094 5.4:+61951360 None:intergenic
CCAATTTGATGTTGAAAACA+AGG 0.523273 5.4:-61947468 MS.gene54170:CDS
GTGTGAACAATCTTCACTCT+AGG 0.524092 5.4:+61948198 None:intergenic
ATGAAAGATTAGTCATCAGC+AGG 0.524208 5.4:-61947250 MS.gene54170:CDS
TTAAATATGGAAGATCTTGG+TGG 0.527152 5.4:-61947050 MS.gene54170:CDS
CCTTAGAGATACAAACATGA+TGG 0.530055 5.4:-61948094 MS.gene54170:CDS
ATGTGTTCCATGATGCTGAA+TGG 0.533306 5.4:+61949222 None:intergenic
CATATAAGCCAAAATCAGGC+AGG 0.539248 5.4:+61948494 None:intergenic
CATGCCTAAGCATGGTCCTA+AGG 0.539255 5.4:+61947424 None:intergenic
GCTCAATTTCCCTGAGAATG+AGG 0.540286 5.4:+61951328 None:intergenic
ACTAACACCTGATGGAATGC+AGG 0.551251 5.4:+61947317 None:intergenic
TTATCCTTAGGACCATGCTT+AGG 0.552419 5.4:-61947428 MS.gene54170:CDS
CATCAGCAGGATTGGTCCGA+AGG 0.553089 5.4:-61947237 MS.gene54170:CDS
TTTCGGTGCATTGTCCGATA+CGG 0.553523 5.4:-61947203 MS.gene54170:CDS
AGCAGTCCTTTCTGGAACCT+AGG 0.553551 5.4:+61950342 None:intergenic
AGTTTCTACAAAGCCATACC+AGG 0.558577 5.4:-61948426 MS.gene54170:intron
TAAAATGACCGAAAATAGCC+GGG 0.558708 5.4:+61947351 None:intergenic
TCTGCAAAATCCCTGAAGGC+GGG 0.566872 5.4:-61947565 MS.gene54170:CDS
GCATGTCTTTGTAACCGTAT+CGG 0.567297 5.4:+61947189 None:intergenic
AAAGCCATGCTGCAACAACT+GGG 0.580024 5.4:+61949179 None:intergenic
AACAACTGGGGCAAACATGA+AGG 0.580870 5.4:+61949192 None:intergenic
GTCTGCAAAATCCCTGAAGG+CGG 0.582828 5.4:-61947566 MS.gene54170:CDS
GGAGACAATGTATGCTGACA+TGG 0.585033 5.4:-61948657 MS.gene54170:CDS
AAAGTGCACGATATACTTGT+CGG 0.589834 5.4:+61949113 None:intergenic
TTTATCTGCTTATTCAACAG+AGG 0.591386 5.4:-61950418 MS.gene54170:CDS
AAACCACTGGCATTGAAGGA+TGG 0.591920 5.4:-61949063 MS.gene54170:CDS
TTGCCCCAGTTGTTGCAGCA+TGG 0.595472 5.4:-61949183 MS.gene54170:CDS
TCTGAACAATTTGTAGAACA+AGG 0.602738 5.4:-61951557 MS.gene54170:CDS
GCAAAATCCCTGAAGGCGGG+TGG 0.603430 5.4:-61947562 MS.gene54170:CDS
CTTAGAGATACAAACATGAT+GGG 0.605319 5.4:-61948093 MS.gene54170:CDS
AGAAACCTAAACATATAGAC+CGG 0.605945 5.4:+61949088 None:intergenic
TTATGGCCATAATGTTCACA+TGG 0.606833 5.4:-61947514 MS.gene54170:CDS
TATACAAGACCTCATTCTCA+GGG 0.606947 5.4:-61951337 MS.gene54170:CDS
CAACCATCCTTCAATGCCAG+TGG 0.609172 5.4:+61949060 None:intergenic
TGAGACCGATTCCCGGGACA+CGG 0.614835 5.4:+61947399 None:intergenic
AAGCATCCTAGGTTCCAGAA+AGG 0.615881 5.4:-61950348 MS.gene54170:CDS
TCTGTCTGCAAAATCCCTGA+AGG 0.618821 5.4:-61947569 MS.gene54170:CDS
GAGAAGTGAGTATAATGCAA+AGG 0.623702 5.4:+61950494 None:intergenic
ACACGGACCATGCCTAAGCA+TGG 0.624244 5.4:+61947416 None:intergenic
CTTAGGACCATGCTTAGGCA+TGG 0.633844 5.4:-61947423 MS.gene54170:CDS
ATATAAGCCAAAATCAGGCA+GGG 0.652756 5.4:+61948495 None:intergenic
AGTTGGGCATTCCTATGCAG+AGG 0.666901 5.4:-61946880 MS.gene54170:CDS
CAACTGTGACAGCTAAACAA+AGG 0.675981 5.4:+61948118 None:intergenic
ACTTGCATGACAATTGGTGA+TGG 0.676889 5.4:-61950300 MS.gene54170:CDS
GTATATACAATATATTCCGG+TGG 0.677707 5.4:-61949138 MS.gene54170:CDS
AGAACAAGGAATATCTCACC+AGG 0.679281 5.4:-61951543 MS.gene54170:intron
TCTGCTGATGATAATGGAGA+AGG 0.680990 5.4:-61951209 MS.gene54170:intron
ATGGTTGTCATTAAGTGGAG+TGG 0.687522 5.4:-61949044 MS.gene54170:CDS
AAGCCATGCTGCAACAACTG+GGG 0.696949 5.4:+61949180 None:intergenic
GAGACAATGTATGCTGACAT+GGG 0.720378 5.4:-61948656 MS.gene54170:CDS
AATAAGGTTAGAGTTAGACA+TGG 0.720937 5.4:+61946724 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAATTAACTAAAAATTATGA+TGG - chr5.4:61949413-61949432 MS.gene54170:intron 10.0%
!!! TTACAATTTTGATAATAAAT+TGG - chr5.4:61951147-61951166 MS.gene54170:intron 10.0%
!! AGATGATAAATATATATATC+AGG + chr5.4:61949500-61949519 None:intergenic 15.0%
!! TTAACTAATTATCCTAATTA+AGG + chr5.4:61947744-61947763 None:intergenic 15.0%
!!! AAAAGAAAAAGGTATTTATA+GGG + chr5.4:61948237-61948256 None:intergenic 15.0%
!!! AAAATAATAATGGATAGTTT+TGG - chr5.4:61947559-61947578 MS.gene54170:CDS 15.0%
!!! AAATAATATCGATATTTTTG+TGG + chr5.4:61949923-61949942 None:intergenic 15.0%
!!! AAATCAAATGTTTTCATTTT+TGG + chr5.4:61948621-61948640 None:intergenic 15.0%
!!! AAATTAAAAGTATACAATGT+TGG - chr5.4:61949697-61949716 MS.gene54170:intron 15.0%
!!! AATTTTAGACTTTATACTTT+TGG - chr5.4:61947437-61947456 MS.gene54170:CDS 15.0%
!!! CTTTTTGGTTTAAAATATTA+TGG + chr5.4:61948656-61948675 None:intergenic 15.0%
!!! GACAAATTTAATGTAAATTT+TGG - chr5.4:61947593-61947612 MS.gene54170:intron 15.0%
!!! TAAATTTAAACTACTTTTCT+TGG - chr5.4:61950564-61950583 MS.gene54170:intron 15.0%
!!! TAGCTTTTACAAAATAATAA+TGG - chr5.4:61947549-61947568 MS.gene54170:CDS 15.0%
!!! TATTCCAAATTTCTTTAAAA+TGG + chr5.4:61951464-61951483 None:intergenic 15.0%
!!! TTTGGAACAAAAAATAAAAA+TGG - chr5.4:61947611-61947630 MS.gene54170:intron 15.0%
!! ATTATAATTGTTTGGAAACA+AGG - chr5.4:61950647-61950666 MS.gene54170:intron 20.0%
!! CTAAACTAATTATGAAGAAA+CGG + chr5.4:61950365-61950384 None:intergenic 20.0%
!! GTTAATTACATACAAATTTG+TGG + chr5.4:61949401-61949420 None:intergenic 20.0%
!! TATTATTAATCTCTTATGCT+TGG - chr5.4:61946831-61946850 MS.gene54170:CDS 20.0%
!! TGTAACTATTTATTCCAAAA+TGG + chr5.4:61947658-61947677 None:intergenic 20.0%
!! TTATAATTGTTTGGAAACAA+GGG - chr5.4:61950648-61950667 MS.gene54170:intron 20.0%
!! TTGGTATATACAATATATTC+CGG - chr5.4:61949162-61949181 MS.gene54170:CDS 20.0%
!!! AAGATGATGAAGAAATTTTT+GGG - chr5.4:61947005-61947024 MS.gene54170:CDS 20.0%
!!! ATTAATATCCAATTGATTTC+TGG + chr5.4:61950162-61950181 None:intergenic 20.0%
!!! CTGTCATCATTTTATTTATA+TGG + chr5.4:61947294-61947313 None:intergenic 20.0%
!!! CTTTATTTTAGGTTTCAATT+TGG - chr5.4:61947468-61947487 MS.gene54170:CDS 20.0%
!!! GAAAAGAAAAAGGTATTTAT+AGG + chr5.4:61948238-61948257 None:intergenic 20.0%
!!! GATAGTTTTGGAATTTAAAA+TGG - chr5.4:61947571-61947590 MS.gene54170:CDS 20.0%
!!! GTCTTTTGTTTGTAATTTTT+TGG + chr5.4:61950421-61950440 None:intergenic 20.0%
!!! TCTTCCATTTTAAAGAAATT+TGG - chr5.4:61951457-61951476 MS.gene54170:intron 20.0%
!!! TGGTTTCTTTTCTTTATTTT+AGG - chr5.4:61947457-61947476 MS.gene54170:CDS 20.0%
!!! TGTTATAAATGAAACCATTT+TGG - chr5.4:61947641-61947660 MS.gene54170:intron 20.0%
!!! TTAGGGATATTTTTGTAATT+CGG - chr5.4:61950444-61950463 MS.gene54170:CDS 20.0%
! AAAATGAAAGATAGCGAAAT+TGG + chr5.4:61950770-61950789 None:intergenic 25.0%
! AAACTCATATAAAGGACATT+TGG - chr5.4:61947254-61947273 MS.gene54170:CDS 25.0%
! AAATGAAAGATAGCGAAATT+GGG + chr5.4:61950769-61950788 None:intergenic 25.0%
! AACATCATAATAGAATCTGA+AGG + chr5.4:61948071-61948090 None:intergenic 25.0%
! AACTTAAATATGGAAGATCT+TGG - chr5.4:61951250-61951269 MS.gene54170:CDS 25.0%
! AACTTTATCAACCACAAATT+TGG + chr5.4:61949451-61949470 None:intergenic 25.0%
! AATGAATTGACTATAGATGA+TGG - chr5.4:61951223-61951242 MS.gene54170:CDS 25.0%
! ACATCATAATAGAATCTGAA+GGG + chr5.4:61948070-61948089 None:intergenic 25.0%
! ACTAAAATTCGCTCTATTTA+TGG + chr5.4:61948208-61948227 None:intergenic 25.0%
! ACTATGTTAACCACTTAAAA+AGG - chr5.4:61949525-61949544 MS.gene54170:intron 25.0%
! AGGATGAAAAGAAAAGAAAA+AGG + chr5.4:61948248-61948267 None:intergenic 25.0%
! AGTAAAACTGACTAACTTAT+AGG + chr5.4:61949303-61949322 None:intergenic 25.0%
! ATTGAATAGACATAATGTAG+CGG + chr5.4:61948980-61948999 None:intergenic 25.0%
! CAAATCAAAAGAAATCTCTT+TGG - chr5.4:61947685-61947704 MS.gene54170:intron 25.0%
! CGCTAGTAATTATAATTGTT+TGG - chr5.4:61950639-61950658 MS.gene54170:intron 25.0%
! CTAAAATTCGCTCTATTTAT+GGG + chr5.4:61948207-61948226 None:intergenic 25.0%
! CTTTCTTATGTTCCTTAATT+AGG - chr5.4:61947729-61947748 MS.gene54170:intron 25.0%
! TAAAATTCGCTCTATTTATG+GGG + chr5.4:61948206-61948225 None:intergenic 25.0%
! TACAAACAAAAGACATGTTA+GGG - chr5.4:61950427-61950446 MS.gene54170:CDS 25.0%
! TCAAGAAGATTGTCTAAATT+TGG - chr5.4:61949548-61949567 MS.gene54170:intron 25.0%
! TCAATTATATCTACTCATCA+AGG - chr5.4:61947197-61947216 MS.gene54170:CDS 25.0%
! TCAGCTAAAGTTACAATTTA+AGG + chr5.4:61948726-61948745 None:intergenic 25.0%
! TCATGTATCAGAATTTAAAG+AGG - chr5.4:61946861-61946880 MS.gene54170:CDS 25.0%
! TCATTATGATACTTGAAGTA+TGG - chr5.4:61950536-61950555 MS.gene54170:intron 25.0%
! TCTGTTTATAATAACTAACG+TGG - chr5.4:61948308-61948327 MS.gene54170:CDS 25.0%
! TGATGGAAGAAACTTAAATA+TGG - chr5.4:61951240-61951259 MS.gene54170:CDS 25.0%
! TTAATCTAAACACTGGAAAA+GGG + chr5.4:61950255-61950274 None:intergenic 25.0%
! TTACAAACAAAAGACATGTT+AGG - chr5.4:61950426-61950445 MS.gene54170:CDS 25.0%
! TTTAATCTAAACACTGGAAA+AGG + chr5.4:61950256-61950275 None:intergenic 25.0%
! TTTATGTTCCAGAAATCAAT+TGG - chr5.4:61950151-61950170 MS.gene54170:intron 25.0%
! TTTCCAGTGTTTAGATTAAA+CGG - chr5.4:61950256-61950275 MS.gene54170:intron 25.0%
! TTTCGGTTTAAAAAAGCTAA+TGG + chr5.4:61948584-61948603 None:intergenic 25.0%
! TTTCTTCATCATCTTCTTTA+AGG + chr5.4:61947000-61947019 None:intergenic 25.0%
!! AATGTCCTTTATATGAGTTT+TGG + chr5.4:61947254-61947273 None:intergenic 25.0%
!! AGATGATGAAGAAATTTTTG+GGG - chr5.4:61947006-61947025 MS.gene54170:CDS 25.0%
!! CTCAAATACATGATTTTGTA+AGG + chr5.4:61948268-61948287 None:intergenic 25.0%
!! GAAGATGATGAAGAAATTTT+TGG - chr5.4:61947004-61947023 MS.gene54170:CDS 25.0%
!! TGAACAATTGATTCTAACAA+TGG + chr5.4:61947768-61947787 None:intergenic 25.0%
!! TTTCATTTTCACTGACATAA+GGG + chr5.4:61951039-61951058 None:intergenic 25.0%
!! TTTTTATCCTAAAATGTGTG+AGG - chr5.4:61950282-61950301 MS.gene54170:CDS 25.0%
!!! AACACACTTTGAAATTGAAT+TGG - chr5.4:61951281-61951300 MS.gene54170:CDS 25.0%
!!! ATTTTAAAAGCCAAAGAATC+AGG - chr5.4:61951388-61951407 MS.gene54170:CDS 25.0%
!!! CAATTTGGTCACTTTTTTTT+TGG - chr5.4:61947483-61947502 MS.gene54170:CDS 25.0%
!!! TGAAAACATTTGATTTTGCA+AGG - chr5.4:61948625-61948644 MS.gene54170:intron 25.0%
!!! TTCGCTATCTTTCATTTTTA+TGG - chr5.4:61950772-61950791 MS.gene54170:intron 25.0%
!!! TTGTTATTTGTTTTACAGAG+AGG - chr5.4:61947514-61947533 MS.gene54170:CDS 25.0%
AACTTCTCTCAATGTCATAA+TGG + chr5.4:61949861-61949880 None:intergenic 30.0%
AAGACAGAGAAGGAAAATTA+TGG + chr5.4:61947371-61947390 None:intergenic 30.0%
AGAAACCTAAACATATAGAC+CGG + chr5.4:61949218-61949237 None:intergenic 30.0%
ATAAAATGACCGAAAATAGC+CGG + chr5.4:61950956-61950975 None:intergenic 30.0%
ATAAGGATCAACTCTTGAAA+CGG + chr5.4:61948823-61948842 None:intergenic 30.0%
ATAAGTAACACCTGATTCTT+TGG + chr5.4:61951401-61951420 None:intergenic 30.0%
ATAATGTTCACATGGAACTA+TGG - chr5.4:61950797-61950816 MS.gene54170:intron 30.0%
ATACAAAAACTAACACCTGA+TGG + chr5.4:61950997-61951016 None:intergenic 30.0%
ATAGTTCCATGTGAACATTA+TGG + chr5.4:61950798-61950817 None:intergenic 30.0%
CAATCTTCAATCATTGATGA+TGG - chr5.4:61947119-61947138 MS.gene54170:CDS 30.0%
CACACTTCTAGCAAAATATA+TGG - chr5.4:61950123-61950142 MS.gene54170:intron 30.0%
CATAACTATTCTACATGGAA+CGG + chr5.4:61948354-61948373 None:intergenic 30.0%
CCAATTTGATGTTGAAAACA+AGG - chr5.4:61950835-61950854 MS.gene54170:intron 30.0%
CTTACATGTTTCCTATTGTT+TGG - chr5.4:61950683-61950702 MS.gene54170:intron 30.0%
CTTAGAGATACAAACATGAT+GGG - chr5.4:61950210-61950229 MS.gene54170:intron 30.0%
GTATATACAATATATTCCGG+TGG - chr5.4:61949165-61949184 MS.gene54170:CDS 30.0%
GTATGCTAGACTAATATACT+TGG + chr5.4:61949724-61949743 None:intergenic 30.0%
GTCAATTCATTTGTTTGTTC+TGG + chr5.4:61951214-61951233 None:intergenic 30.0%
GTTCAATAGATCCAAACAAT+AGG + chr5.4:61950697-61950716 None:intergenic 30.0%
TAAACAGAAAGTTGACACTA+CGG + chr5.4:61948296-61948315 None:intergenic 30.0%
TATACTTCTTTGCTAGAAGT+TGG - chr5.4:61951547-61951566 MS.gene54170:CDS 30.0%
TCTGAACAATTTGTAGAACA+AGG - chr5.4:61946746-61946765 MS.gene54170:CDS 30.0%
TGGCTTAAAGTGAAAAATAG+TGG + chr5.4:61949953-61949972 None:intergenic 30.0%
TGTTCTACAAATTGTTCAGA+AGG + chr5.4:61946746-61946765 None:intergenic 30.0%
TTAAATATGGAAGATCTTGG+TGG - chr5.4:61951253-61951272 MS.gene54170:CDS 30.0%
TTAAGCAGCTTAAAATCCAA+AGG + chr5.4:61947171-61947190 None:intergenic 30.0%
TTCAGCCAAAACTCATATAA+AGG - chr5.4:61947246-61947265 MS.gene54170:CDS 30.0%
TTGTAAAAGCTATACCAAGA+TGG + chr5.4:61947541-61947560 None:intergenic 30.0%
TTTATCTGCTTATTCAACAG+AGG - chr5.4:61947885-61947904 MS.gene54170:intron 30.0%
! ATAATGTAGCGGAATATGTT+CGG + chr5.4:61948969-61948988 None:intergenic 30.0%
! ATGGACAGCATAATTCTTTT+TGG + chr5.4:61948671-61948690 None:intergenic 30.0%
! ATTTTCAGTAATCTTGCTTC+CGG - chr5.4:61950926-61950945 MS.gene54170:intron 30.0%
! CTTTCATTTTCACTGACATA+AGG + chr5.4:61951040-61951059 None:intergenic 30.0%
! GTGTTTCTTTTCAATTCCTT+TGG - chr5.4:61947152-61947171 MS.gene54170:CDS 30.0%
! TACTTGTTGCACAAGTAAAA+GGG - chr5.4:61948137-61948156 MS.gene54170:CDS 30.0%
! TGTTTACCATTTTCATGTGA+TGG - chr5.4:61951322-61951341 MS.gene54170:CDS 30.0%
! TTACTTGTTGCACAAGTAAA+AGG - chr5.4:61948136-61948155 MS.gene54170:CDS 30.0%
! TTTTTCTGCACTCTCAATAA+AGG - chr5.4:61949673-61949692 MS.gene54170:intron 30.0%
!! ATCTTCTTGACCTTTTTAAG+TGG + chr5.4:61949538-61949557 None:intergenic 30.0%
!! CAGGTGTTACTTATATAGTT+GGG - chr5.4:61951407-61951426 MS.gene54170:CDS 30.0%
!! GTCTCATGTATCATTTTAGT+TGG - chr5.4:61949050-61949069 MS.gene54170:CDS 30.0%
!! TCAGGTGTTACTTATATAGT+TGG - chr5.4:61951406-61951425 MS.gene54170:CDS 30.0%
!! TGGTCTTGTAAAAAACTGAA+TGG - chr5.4:61948164-61948183 MS.gene54170:CDS 30.0%
!! TGTGGTTGATAAAGTTATGT+TGG - chr5.4:61949455-61949474 MS.gene54170:intron 30.0%
!!! AACTACTTTTCTTGGTTTGT+AGG - chr5.4:61950572-61950591 MS.gene54170:intron 30.0%
!!! ACTACTTTTCTTGGTTTGTA+GGG - chr5.4:61950573-61950592 MS.gene54170:intron 30.0%
!!! ATCATTGATGATGGTACTTT+TGG - chr5.4:61947128-61947147 MS.gene54170:CDS 30.0%
!!! CCTTGTTTTCAACATCAAAT+TGG + chr5.4:61950838-61950857 None:intergenic 30.0%
AAAGCTAATGGTGTAAACAG+AGG + chr5.4:61948572-61948591 None:intergenic 35.0%
AAAGTGCACGATATACTTGT+CGG + chr5.4:61949193-61949212 None:intergenic 35.0%
AAATTTACCTGCATTCCATC+AGG - chr5.4:61950979-61950998 MS.gene54170:intron 35.0%
AACAATTTAATGCGCAGCAT+TGG + chr5.4:61950083-61950102 None:intergenic 35.0%
AATATCAGGTAGTTGATCAG+GGG - chr5.4:61948041-61948060 MS.gene54170:intron 35.0%
AATGCAAGAAAATGAGTACC+TGG + chr5.4:61946781-61946800 None:intergenic 35.0%
ATATAAGCCAAAATCAGGCA+GGG + chr5.4:61949811-61949830 None:intergenic 35.0%
ATCAACCACAAATTTGGAAG+TGG + chr5.4:61949445-61949464 None:intergenic 35.0%
ATCTGTGACATTGCTAATGA+TGG + chr5.4:61948690-61948709 None:intergenic 35.0%
ATGAGCAAGATGTTATCCTT+AGG - chr5.4:61950863-61950882 MS.gene54170:intron 35.0%
ATGTTAAGGTCATAGCTTAC+AGG + chr5.4:61948106-61948125 None:intergenic 35.0%
ATTAGACATCAAGACAGAGA+AGG + chr5.4:61947381-61947400 None:intergenic 35.0%
CAATATCAGGTAGTTGATCA+GGG - chr5.4:61948040-61948059 MS.gene54170:intron 35.0%
CAGAGAACCTGATATTATGT+TGG - chr5.4:61951516-61951535 MS.gene54170:intron 35.0%
CAGGTACAGAACTTTGTATA+AGG + chr5.4:61948840-61948859 None:intergenic 35.0%
CCATCATGTTTGTATCTCTA+AGG + chr5.4:61950212-61950231 None:intergenic 35.0%
CCTTAGAGATACAAACATGA+TGG - chr5.4:61950209-61950228 MS.gene54170:intron 35.0%
GAGAAGTGAGTATAATGCAA+AGG + chr5.4:61947812-61947831 None:intergenic 35.0%
GAGGCGTAATCAATATACTA+AGG + chr5.4:61950477-61950496 None:intergenic 35.0%
GCAGATAAATTCTCATCTGT+TGG + chr5.4:61947874-61947893 None:intergenic 35.0%
GCTACTTCCAACATAATATC+AGG + chr5.4:61951526-61951545 None:intergenic 35.0%
GCTTCTGCAGAAAAATAGTA+TGG + chr5.4:61949973-61949992 None:intergenic 35.0%
GGTTAGTGAAGTTACATTGA+TGG + chr5.4:61949380-61949399 None:intergenic 35.0%
TAAAATGACCGAAAATAGCC+GGG + chr5.4:61950955-61950974 None:intergenic 35.0%
TACTGAAATGAGACACGAAA+AGG + chr5.4:61948888-61948907 None:intergenic 35.0%
TAGCTCATTATCATCCAATG+TGG - chr5.4:61948500-61948519 MS.gene54170:CDS 35.0%
TATACAAGACCTCATTCTCA+GGG - chr5.4:61946966-61946985 MS.gene54170:CDS 35.0%
TCTTAAAGTGAATTCTTGCC+TGG + chr5.4:61949898-61949917 None:intergenic 35.0%
TGAACATGTCAGTAAAAACG+AGG - chr5.4:61948423-61948442 MS.gene54170:intron 35.0%
TGACCGTTTAATCTAAACAC+TGG + chr5.4:61950262-61950281 None:intergenic 35.0%
TGTTGTCACAAACATAACAG+TGG + chr5.4:61950609-61950628 None:intergenic 35.0%
TTATGGCCATAATGTTCACA+TGG - chr5.4:61950789-61950808 MS.gene54170:intron 35.0%
TTTACTAAACTGCGTTCAGT+AGG - chr5.4:61949317-61949336 MS.gene54170:intron 35.0%
TTTCTCCGGTCTATATGTTT+AGG - chr5.4:61949210-61949229 MS.gene54170:CDS 35.0%
! ATGAAAGATTAGTCATCAGC+AGG - chr5.4:61951053-61951072 MS.gene54170:intron 35.0%
! CTTTTGTGTATCAGTGGTAT+TGG - chr5.4:61949143-61949162 MS.gene54170:CDS 35.0%
! GAGGTCTTGTATACATAAAG+AGG + chr5.4:61946959-61946978 None:intergenic 35.0%
! GGATGATAATGAGCTACAAA+TGG + chr5.4:61948496-61948515 None:intergenic 35.0%
! TCAGTATTTTCAGCAGTTTC+AGG - chr5.4:61948902-61948921 MS.gene54170:intron 35.0%
! TCATTTTCCCTAAATGTGTG+AGG + chr5.4:61950496-61950515 None:intergenic 35.0%
! TTCCTATGTGTTACTGTCTT+AGG - chr5.4:61949620-61949639 MS.gene54170:intron 35.0%
! TTTAGGTTTCTCAAAACCAC+TGG - chr5.4:61949227-61949246 MS.gene54170:CDS 35.0%
! TTTCTGCAGAAGCTGTATTT+TGG - chr5.4:61949980-61949999 MS.gene54170:intron 35.0%
!! ATTTTGGCCAGTTTTCATAG+TGG - chr5.4:61949996-61950015 MS.gene54170:intron 35.0%
!! CATAAAGAGGAGAAGTACTT+AGG + chr5.4:61946946-61946965 None:intergenic 35.0%
!! GGTTGATAAAGTTATGTTGG+TGG - chr5.4:61949458-61949477 MS.gene54170:intron 35.0%
!! TGTTCTTTGAAAAGCATCCT+AGG - chr5.4:61947944-61947963 MS.gene54170:intron 35.0%
!! TTCTTTGCTAGAAGTTGGTA+TGG - chr5.4:61951552-61951571 MS.gene54170:CDS 35.0%
!!! ATGTTTTCATTTTTGGTCCC+TGG + chr5.4:61948614-61948633 None:intergenic 35.0%
!!! TGATTTTTTTGCCTCTGCAT+AGG + chr5.4:61951437-61951456 None:intergenic 35.0%
!!! TGCCTGATTTTGGCTTATAT+GGG - chr5.4:61949811-61949830 MS.gene54170:intron 35.0%
AAAGTGGCCACTATGAAAAC+TGG + chr5.4:61950006-61950025 None:intergenic 40.0%
AAATGGCATGAACATCAGCA+CGG + chr5.4:61948479-61948498 None:intergenic 40.0%
AAGTGAATTCTTGCCTGGTA+TGG + chr5.4:61949893-61949912 None:intergenic 40.0%
ACTCTAGCATACCAAAGTCT+TGG - chr5.4:61946905-61946924 MS.gene54170:CDS 40.0%
ACTGCTGATCTTTGTTCTGT+TGG - chr5.4:61947978-61947997 MS.gene54170:intron 40.0%
ACTTGCATGACAATTGGTGA+TGG - chr5.4:61948003-61948022 MS.gene54170:intron 40.0%
AGAACAAGGAATATCTCACC+AGG - chr5.4:61946760-61946779 MS.gene54170:CDS 40.0%
AGGATGGTCATATACCGAAA+CGG + chr5.4:61948868-61948887 None:intergenic 40.0%
AGTATATCGTGCACTTTCTC+CGG - chr5.4:61949196-61949215 MS.gene54170:CDS 40.0%
AGTTTCTACAAAGCCATACC+AGG - chr5.4:61949877-61949896 MS.gene54170:intron 40.0%
ATATACCGAAACGGACAAAC+AGG + chr5.4:61948859-61948878 None:intergenic 40.0%
ATGGTTGTCATTAAGTGGAG+TGG - chr5.4:61949259-61949278 MS.gene54170:CDS 40.0%
ATGTGTTCCATGATGCTGAA+TGG + chr5.4:61949084-61949103 None:intergenic 40.0%
CAAAGTCTTGGAGTAGTCTA+TGG - chr5.4:61946917-61946936 MS.gene54170:CDS 40.0%
CAACTGTGACAGCTAAACAA+AGG + chr5.4:61950188-61950207 None:intergenic 40.0%
CACCCATATAAGCCAAAATC+AGG + chr5.4:61949816-61949835 None:intergenic 40.0%
CACCTAAGACAGTAACACAT+AGG + chr5.4:61949625-61949644 None:intergenic 40.0%
CATAGACTACTCCAAGACTT+TGG + chr5.4:61946919-61946938 None:intergenic 40.0%
CATATAAGCCAAAATCAGGC+AGG + chr5.4:61949812-61949831 None:intergenic 40.0%
CATGATGCTGAATGGAGAAA+AGG + chr5.4:61949076-61949095 None:intergenic 40.0%
CGAAACATGTAGAACTCCTT+CGG + chr5.4:61951085-61951104 None:intergenic 40.0%
CGAAGGAGTTCTACATGTTT+CGG - chr5.4:61951083-61951102 MS.gene54170:intron 40.0%
CGTGGCATAACTATTCTACA+TGG + chr5.4:61948359-61948378 None:intergenic 40.0%
CTGCAATGACTCGACTTTAT+AGG + chr5.4:61951368-61951387 None:intergenic 40.0%
CTGCTGATCTTTGTTCTGTT+GGG - chr5.4:61947979-61947998 MS.gene54170:intron 40.0%
GAAATGAGACACGAAAAGGA+TGG + chr5.4:61948884-61948903 None:intergenic 40.0%
GAAGGATGGTTGTCATTAAG+TGG - chr5.4:61949254-61949273 MS.gene54170:CDS 40.0%
GAGACAATGTATGCTGACAT+GGG - chr5.4:61949647-61949666 MS.gene54170:intron 40.0%
GATCAACTACCTGATATTGC+AGG + chr5.4:61948039-61948058 None:intergenic 40.0%
GATTACGCCTCACACATTTA+GGG - chr5.4:61950486-61950505 MS.gene54170:CDS 40.0%
GCAATATCAGGTAGTTGATC+AGG - chr5.4:61948039-61948058 MS.gene54170:intron 40.0%
GCATGTCTTTGTAACCGTAT+CGG + chr5.4:61951117-61951136 None:intergenic 40.0%
GGGTGCTTTCATTTATCTTC+TGG - chr5.4:61947026-61947045 MS.gene54170:CDS 40.0%
GTATACAAGACCTCATTCTC+AGG - chr5.4:61946965-61946984 MS.gene54170:CDS 40.0%
GTCATGTCTGCTGATGATAA+TGG - chr5.4:61947088-61947107 MS.gene54170:CDS 40.0%
GTGTGAACAATCTTCACTCT+AGG + chr5.4:61950108-61950127 None:intergenic 40.0%
TAAAAACGAGGAGATAGACG+TGG - chr5.4:61948435-61948454 MS.gene54170:CDS 40.0%
TACTTGTGCAACAAGTAACC+CGG + chr5.4:61948134-61948153 None:intergenic 40.0%
TATGACCTTAACATCAGCTC+CGG - chr5.4:61948112-61948131 MS.gene54170:CDS 40.0%
TCTTGGCCATCACATGAAAA+TGG + chr5.4:61951331-61951350 None:intergenic 40.0%
TGATTACGCCTCACACATTT+AGG - chr5.4:61950485-61950504 MS.gene54170:CDS 40.0%
TGCACAAGTAAAAGGGAGTT+TGG - chr5.4:61948144-61948163 MS.gene54170:CDS 40.0%
TTATCCTTAGGACCATGCTT+AGG - chr5.4:61950875-61950894 MS.gene54170:intron 40.0%
TTGGGAACTTGCATGACAAT+TGG - chr5.4:61947997-61948016 MS.gene54170:intron 40.0%
TTGTTCACTTATTGCACTGC+AGG - chr5.4:61947781-61947800 MS.gene54170:intron 40.0%
! AGATTAGTCATCAGCAGGAT+TGG - chr5.4:61951058-61951077 MS.gene54170:intron 40.0%
! AGTATATCCCTGCCTGATTT+TGG - chr5.4:61949801-61949820 MS.gene54170:intron 40.0%
! ATGTGTTACTGTCTTAGGTG+TGG - chr5.4:61949625-61949644 MS.gene54170:intron 40.0%
! CTTTGTTTAGCTGTCACAGT+TGG - chr5.4:61950186-61950205 MS.gene54170:intron 40.0%
! CTTTTCTCCATTCAGCATCA+TGG - chr5.4:61949074-61949093 MS.gene54170:CDS 40.0%
! GACAGAACCTCACACATTTT+AGG + chr5.4:61950292-61950311 None:intergenic 40.0%
! TCATCTGTTGGTTGCTGATT+TGG + chr5.4:61947862-61947881 None:intergenic 40.0%
! TTTTACAGAGAGGACCATCT+TGG - chr5.4:61947524-61947543 MS.gene54170:CDS 40.0%
!! AACATGATGGGTCATGCATA+TGG - chr5.4:61950222-61950241 MS.gene54170:intron 40.0%
!! TCTGCTGATGATAATGGAGA+AGG - chr5.4:61947094-61947113 MS.gene54170:CDS 40.0%
!!! CTGCCTGATTTTGGCTTATA+TGG - chr5.4:61949810-61949829 MS.gene54170:intron 40.0%
!!! CTTTTCTTGGTTTGTAGGGT+TGG - chr5.4:61950577-61950596 MS.gene54170:intron 40.0%
!!! GATTTTGGCTTATATGGGTG+AGG - chr5.4:61949816-61949835 MS.gene54170:intron 40.0%
!!! TCCAATGTGGTTTTGACATG+TGG - chr5.4:61948513-61948532 MS.gene54170:CDS 40.0%
AAAAGCCATGCTGCAACAAC+TGG + chr5.4:61949128-61949147 None:intergenic 45.0%
AAAGCCATGCTGCAACAACT+GGG + chr5.4:61949127-61949146 None:intergenic 45.0%
AACAACTGGGGCAAACATGA+AGG + chr5.4:61949114-61949133 None:intergenic 45.0%
AAGCATCCTAGGTTCCAGAA+AGG - chr5.4:61947955-61947974 MS.gene54170:intron 45.0%
ACACACCATCATTTCCACGT+AGG + chr5.4:61948548-61948567 None:intergenic 45.0%
ACTAAACTGCGTTCAGTAGG+TGG - chr5.4:61949320-61949339 MS.gene54170:intron 45.0%
ACTAACACCTGATGGAATGC+AGG + chr5.4:61950989-61951008 None:intergenic 45.0%
ATGACCTTAACATCAGCTCC+GGG - chr5.4:61948113-61948132 MS.gene54170:CDS 45.0%
CAAAGATCAGCAGTCCTTTC+TGG + chr5.4:61947972-61947991 None:intergenic 45.0%
CAGAAAGTTGACACTACGGA+CGG + chr5.4:61948292-61948311 None:intergenic 45.0%
CAGAGGATTCTGCTGATACA+TGG - chr5.4:61947902-61947921 MS.gene54170:intron 45.0%
CCACAAATTTGGAAGTGGTC+TGG + chr5.4:61949440-61949459 None:intergenic 45.0%
CCAGACCACTTCCAAATTTG+TGG - chr5.4:61949437-61949456 MS.gene54170:intron 45.0%
CTGTACCTGTTTGTCCGTTT+CGG - chr5.4:61948851-61948870 MS.gene54170:intron 45.0%
GCCACATGTCAAAACCACAT+TGG + chr5.4:61948517-61948536 None:intergenic 45.0%
GCTCAATTTCCCTGAGAATG+AGG + chr5.4:61946978-61946997 None:intergenic 45.0%
GGAGACAATGTATGCTGACA+TGG - chr5.4:61949646-61949665 MS.gene54170:intron 45.0%
GGAGTGGTGCTTTCAATAAC+AGG - chr5.4:61949275-61949294 MS.gene54170:intron 45.0%
GTCATCCTACGTGGAAATGA+TGG - chr5.4:61948540-61948559 MS.gene54170:intron 45.0%
GTGATCACTCCTGCAATATC+AGG - chr5.4:61948027-61948046 MS.gene54170:intron 45.0%
TAAACCGAAAGTTGACGCCA+GGG - chr5.4:61948594-61948613 MS.gene54170:intron 45.0%
TAATCTTGCTTCCGGTATCC+CGG - chr5.4:61950934-61950953 MS.gene54170:intron 45.0%
TCCTACAACAGCAGCAAAAG+TGG + chr5.4:61950022-61950041 None:intergenic 45.0%
TGCGTTCAGTAGGTGGTTAA+TGG - chr5.4:61949327-61949346 MS.gene54170:intron 45.0%
TTAAACCGAAAGTTGACGCC+AGG - chr5.4:61948593-61948612 MS.gene54170:intron 45.0%
TTCACTTATTGCACTGCAGG+AGG - chr5.4:61947784-61947803 MS.gene54170:intron 45.0%
TTGGCTTACTGTCATGGAGT+TGG + chr5.4:61948946-61948965 None:intergenic 45.0%
! AAACCACTGGCATTGAAGGA+TGG - chr5.4:61949240-61949259 MS.gene54170:CDS 45.0%
! CTCAAAACCACTGGCATTGA+AGG - chr5.4:61949236-61949255 MS.gene54170:CDS 45.0%
! CTGAAAATGAGACCGATTCC+CGG + chr5.4:61950914-61950933 None:intergenic 45.0%
! GCATGGCTTTTGTGTATCAG+TGG - chr5.4:61949137-61949156 MS.gene54170:CDS 45.0%
! TGAAAATGAGACCGATTCCC+GGG + chr5.4:61950913-61950932 None:intergenic 45.0%
! TGTAGCGGAATATGTTCGGT+TGG + chr5.4:61948965-61948984 None:intergenic 45.0%
! TTTCGGTGCATTGTCCGATA+CGG - chr5.4:61951100-61951119 MS.gene54170:intron 45.0%
!! GATATACTTGTCGGTTCCAC+CGG + chr5.4:61949184-61949203 None:intergenic 45.0%
AAGCCATGCTGCAACAACTG+GGG + chr5.4:61949126-61949145 None:intergenic 50.0%
ACCGAAAATAGCCGGGATAC+CGG + chr5.4:61950948-61950967 None:intergenic 50.0%
ACGTGTCAACACCACCACAT+CGG - chr5.4:61948376-61948395 MS.gene54170:intron 50.0%
AGGACTCGTCTCGAAGTTCT+TGG + chr5.4:61951348-61951367 None:intergenic 50.0%
AGTTGGGCATTCCTATGCAG+AGG - chr5.4:61951423-61951442 MS.gene54170:CDS 50.0%
CAACCATCCTTCAATGCCAG+TGG + chr5.4:61949246-61949265 None:intergenic 50.0%
CATGCCTAAGCATGGTCCTA+AGG + chr5.4:61950882-61950901 None:intergenic 50.0%
CTTAGGACCATGCTTAGGCA+TGG - chr5.4:61950880-61950899 MS.gene54170:intron 50.0%
GTAACCCGGAGCTGATGTTA+AGG + chr5.4:61948120-61948139 None:intergenic 50.0%
GTCTGCAAAATCCCTGAAGG+CGG - chr5.4:61950737-61950756 MS.gene54170:intron 50.0%
TCTGCAAAATCCCTGAAGGC+GGG - chr5.4:61950738-61950757 MS.gene54170:intron 50.0%
TGTGGCATTGTCATCCTACG+TGG - chr5.4:61948531-61948550 MS.gene54170:intron 50.0%
! TGTGTCACTATCACCCGATG+TGG + chr5.4:61948393-61948412 None:intergenic 50.0%
!! AGCAGTCCTTTCTGGAACCT+AGG + chr5.4:61947964-61947983 None:intergenic 50.0%
!! GTTCGGTTGGCTTACTGTCA+TGG + chr5.4:61948952-61948971 None:intergenic 50.0%
!! TCCGGTATCCCGGCTATTTT+CGG - chr5.4:61950944-61950963 MS.gene54170:intron 50.0%
!!! GCCACTTTTGCTGCTGTTGT+AGG - chr5.4:61950018-61950037 MS.gene54170:intron 50.0%
ACACGGACCATGCCTAAGCA+TGG + chr5.4:61950890-61950909 None:intergenic 55.0%
CGTGGCATATCAGCTCCATG+TGG - chr5.4:61948453-61948472 MS.gene54170:CDS 55.0%
CGTGTCAACACCACCACATC+GGG - chr5.4:61948377-61948396 MS.gene54170:intron 55.0%
GTCACTATCACCCGATGTGG+TGG + chr5.4:61948390-61948409 None:intergenic 55.0%
TGAACATCAGCACGGCCACA+TGG + chr5.4:61948471-61948490 None:intergenic 55.0%
TGGTCCCTGGCGTCAACTTT+CGG + chr5.4:61948601-61948620 None:intergenic 55.0%
TTGCCCCAGTTGTTGCAGCA+TGG - chr5.4:61949120-61949139 MS.gene54170:CDS 55.0%
!! CATCAGCAGGATTGGTCCGA+AGG - chr5.4:61951066-61951085 MS.gene54170:intron 55.0%
!! GATGTGGTGGTGTTGACACG+TGG + chr5.4:61948377-61948396 None:intergenic 55.0%
ATGGTCCGTGTCCCGGGAAT+CGG - chr5.4:61950899-61950918 MS.gene54170:intron 60.0%
ATTGGGATCCACCCGCCTTC+AGG + chr5.4:61950752-61950771 None:intergenic 60.0%
CTTAGGCATGGTCCGTGTCC+CGG - chr5.4:61950892-61950911 MS.gene54170:intron 60.0%
GCAAAATCCCTGAAGGCGGG+TGG - chr5.4:61950741-61950760 MS.gene54170:intron 60.0%
TTAGGCATGGTCCGTGTCCC+GGG - chr5.4:61950893-61950912 MS.gene54170:intron 60.0%
TTGGGATCCACCCGCCTTCA+GGG + chr5.4:61950751-61950770 None:intergenic 60.0%
! TGAGACCGATTCCCGGGACA+CGG + chr5.4:61950907-61950926 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr5.4 gene 61946737 61951588 61946737 ID=MS.gene54170
chr5.4 mRNA 61946737 61951588 61946737 ID=MS.gene54170.t1;Parent=MS.gene54170
chr5.4 exon 61951544 61951588 61951544 ID=MS.gene54170.t1.exon1;Parent=MS.gene54170.t1
chr5.4 CDS 61951544 61951588 61951544 ID=cds.MS.gene54170.t1;Parent=MS.gene54170.t1
chr5.4 exon 61951210 61951453 61951210 ID=MS.gene54170.t1.exon2;Parent=MS.gene54170.t1
chr5.4 CDS 61951210 61951453 61951210 ID=cds.MS.gene54170.t1;Parent=MS.gene54170.t1
chr5.4 exon 61950277 61950522 61950277 ID=MS.gene54170.t1.exon3;Parent=MS.gene54170.t1
chr5.4 CDS 61950277 61950522 61950277 ID=cds.MS.gene54170.t1;Parent=MS.gene54170.t1
chr5.4 exon 61949369 61949419 61949369 ID=MS.gene54170.t1.exon4;Parent=MS.gene54170.t1
chr5.4 CDS 61949369 61949419 61949369 ID=cds.MS.gene54170.t1;Parent=MS.gene54170.t1
chr5.4 exon 61949029 61949289 61949029 ID=MS.gene54170.t1.exon5;Parent=MS.gene54170.t1
chr5.4 CDS 61949029 61949289 61949029 ID=cds.MS.gene54170.t1;Parent=MS.gene54170.t1
chr5.4 exon 61948631 61948683 61948631 ID=MS.gene54170.t1.exon6;Parent=MS.gene54170.t1
chr5.4 CDS 61948631 61948683 61948631 ID=cds.MS.gene54170.t1;Parent=MS.gene54170.t1
chr5.4 exon 61948427 61948541 61948427 ID=MS.gene54170.t1.exon7;Parent=MS.gene54170.t1
chr5.4 CDS 61948427 61948541 61948427 ID=cds.MS.gene54170.t1;Parent=MS.gene54170.t1
chr5.4 exon 61948082 61948336 61948082 ID=MS.gene54170.t1.exon8;Parent=MS.gene54170.t1
chr5.4 CDS 61948082 61948336 61948082 ID=cds.MS.gene54170.t1;Parent=MS.gene54170.t1
chr5.4 exon 61946737 61947593 61946737 ID=MS.gene54170.t1.exon9;Parent=MS.gene54170.t1
chr5.4 CDS 61946737 61947593 61946737 ID=cds.MS.gene54170.t1;Parent=MS.gene54170.t1
Gene Sequence

>MS.gene54170

ATGAATCCTTCTGAACAATTTGTAGAACAAGGAATATCTCACCAGGTACTCATTTTCTTGCATTTCAAATATGAAATTGTGTATACTATATATCTATTATTAATCTCTTATGCTTGGTTTCATTTCATGTATCAGAATTTAAAGAGGACAACTTGTGCAAATGTGCTGACTCTAGCATACCAAAGTCTTGGAGTAGTCTATGGTGACCTAAGTACTTCTCCTCTTTATGTATACAAGACCTCATTCTCAGGGAAATTGAGCCTTAAAGAAGATGATGAAGAAATTTTTGGGGTGCTTTCATTTATCTTCTGGACATTTACTATTATTGCTCTCTTCAAATATGTTTTCATTGTCATGTCTGCTGATGATAATGGAGAAGGTACAATCTTCAATCATTGATGATGGTACTTTTGGTGTGTTTCTTTTCAATTCCTTTGGATTTTAAGCTGCTTAAGTCAACTCAATTATATCTACTCATCAAGGACACAATTTTTATGATCACATTATTATTCAGCCAAAACTCATATAAAGGACATTTGGATATTTTTGCTTTACCATATAAATAAAATGATGACAGAAGCATTGTATATTCTGTCATTTGTTCTTTTTGAATTTATATAATTTGTATGAGCCATAATTTTCCTTCTCTGTCTTGATGTCTAATATGATTACTTAATTAATTGATAACTATTTGAAGATTAATTTTAGACTTTATACTTTTGGTTTCTTTTCTTTATTTTAGGTTTCAATTTGGTCACTTTTTTTTTGGTAATGAAATTGTTATTTGTTTTACAGAGAGGACCATCTTGGTATAGCTTTTACAAAATAATAATGGATAGTTTTGGAATTTAAAATGGACAAATTTAATGTAAATTTTGGAACAAAAAATAAAAATGGAACACATTGTTATAAATGAAACCATTTTGGAATAAATAGTTACATCTTGTACAAATCAAAAGAAATCTCTTTGGCTCATGAGCATCTAAAAATTTCTTTCTTATGTTCCTTAATTAGGATAATTAGTTAAACCATTGTTAGAATCAATTGTTCACTTATTGCACTGCAGGAGGCACCTTTGCATTATACTCACTTCTCTGCAGACATGCAAGACTAAGCATTTTGCCAAATCAGCAACCAACAGATGAGAATTTATCTGCTTATTCAACAGAGGATTCTGCTGATACATGGCAATCTTCTCTTTTGAAGCTGTTCTTTGAAAAGCATCCTAGGTTCCAGAAAGGACTGCTGATCTTTGTTCTGTTGGGAACTTGCATGACAATTGGTGATGGTGTGATCACTCCTGCAATATCAGGTAGTTGATCAGGGGCATCCCTTCAGATTCTATTATGATGTTTACTTCATGATTCCTGTAAGCTATGACCTTAACATCAGCTCCGGGTTACTTGTTGCACAAGTAAAAGGGAGTTTGGTCTTGTAAAAAACTGAATGGTTTAAATGTGTTTTGTCCCCATAAATAGAGCGAATTTTAGTTTTAGTCCCTATAAATACCTTTTTCTTTTCTTTTCATCCTTACAAAATCATGTATTTGAGTCCGTCCGTAGTGTCAACTTTCTGTTTATAATAACTAACGTGGAAAATACAAGTAAATGACATCCGTTCCATGTAGAATAGTTATGCCACGTGTCAACACCACCACATCGGGTGATAGTGACACATCAACACTAATGAACATGTCAGTAAAAACGAGGAGATAGACGTGGCATATCAGCTCCATGTGGCCGTGCTGATGTTCATGCCATTTGTAGCTCATTATCATCCAATGTGGTTTTGACATGTGGCATTGTCATCCTACGTGGAAATGATGGTGTGTACCTCTGTTTACACCATTAGCTTTTTTAAACCGAAAGTTGACGCCAGGGACCAAAAATGAAAACATTTGATTTTGCAAGGACTAACCATAATATTTTAAACCAAAAAGAATTATGCTGTCCATCATTAGCAATGTCACAGATACACATATGCATTCCTTAAATTGTAACTTTAGCTGATTACTAATTGCTAGAATTCATTATTTCTCATTAATGTGATTAGACAAAAGCACATTTCAGAATAAATAATTGCACCGTTTCAAGAGTTGATCCTTATACAAAGTTCTGTACCTGTTTGTCCGTTTCGGTATATGACCATCCTTTTCGTGTCTCATTTCAGTATTTTCAGCAGTTTCAGGAGTTCAAGTTAAGATCAACCAACTCCATGACAGTAAGCCAACCGAACATATTCCGCTACATTATGTCTATTCAATGCATAATTGTAAAACTCTACATTATGTATTGTGCAGATTATGTTGTTATAGTCTCATGTATCATTTTAGTTGGCCTTTTCTCCATTCAGCATCATGGAACACATAGAGTTTCCTTCATGTTTGCCCCAGTTGTTGCAGCATGGCTTTTGTGTATCAGTGGTATTGGTATATACAATATATTCCGGTGGAACCGACAAGTATATCGTGCACTTTCTCCGGTCTATATGTTTAGGTTTCTCAAAACCACTGGCATTGAAGGATGGTTGTCATTAAGTGGAGTGGTGCTTTCAATAACAGGTACCTATAAGTTAGTCAGTTTTACTAAACTGCGTTCAGTAGGTGGTTAATGGATATAGCATATTGTCAAAACTCATTGACCATCAATGTAACTTCACTAACCACAAATTTGTATGTAATTAACTAAAAATTATGATGGACCAGACCACTTCCAAATTTGTGGTTGATAAAGTTATGTTGGTGGTTAATAAGTTTCGACACCTGATATATATATTTATCATCTATTGAACTATGTTAACCACTTAAAAAGGTCAAGAAGATTGTCTAAATTTGGTTGTACAACAAATCATTTCTGTATCAGCTAATGAGCTATGAGATTAAATTTCCTATGTGTTACTGTCTTAGGTGTGGAGACAATGTATGCTGACATGGGTCATTTTTCTGCACTCTCAATAAAGGTAAATTAAAAGTATACAATGTTGGTCCAAGTATATTAGTCTAGCATACAAAAATGAAATCTGATGTAACAGTTACACTTAAATCTCAGATAGCTTTCACATGTTTAGTATATCCCTGCCTGATTTTGGCTTATATGGGTGAGGCTGCATTTCTCTCTAAGCACCATTATGACATTGAGAGAAGTTTCTACAAAGCCATACCAGGCAAGAATTCACTTTAAGAAACCACAAAAATATCGATATTATTTATGATAACCACTATTTTTCACTTTAAGCCATACTATTTTTCTGCAGAAGCTGTATTTTGGCCAGTTTTCATAGTGGCCACTTTTGCTGCTGTTGTAGGAAGTCAAGCAGTGATTTCTGCAACTTTTTCAATCATAAGCCAATGCTGCGCATTAAATTGTTTTCCTAGAGTGAAGATTGTTCACACTTCTAGCAAAATATATGGACAGATTTATGTTCCAGAAATCAATTGGATATTAATGTGCCTTTGTTTAGCTGTCACAGTTGGCCTTAGAGATACAAACATGATGGGTCATGCATATGGTACAATACCCTTTTCCAGTGTTTAGATTAAACGGTCATTTTTATCCTAAAATGTGTGAGGTTCTGTCACAATAGTCTTCATCAAATGTAAAACTACATAAATACGTCTTTCATTAGTCCGTTTCTTCATAATTAGTTTAGTTCTTGAATGTGTCTTCAAGTAGTCAATTAGTTCCAAAAAATTACAAACAAAAGACATGTTAGGGATATTTTTGTAATTCGGATACAATCCTTAGTATATTGATTACGCCTCACACATTTAGGGAAAATGACTGTTTATTCTTATATTTACTCATTATGATACTTGAAGTATGGAAAACTAAATTTAAACTACTTTTCTTGGTTTGTAGGGTTGGCTATCACCACTGTTATGTTTGTGACAACATGTTTGATGACGCTAGTAATTATAATTGTTTGGAAACAAGGGATAATAAAAGCACTTACATGTTTCCTATTGTTTGGATCTATTGAACTTCTTTACATCTCAGCTTCTGTCTGCAAAATCCCTGAAGGCGGGTGGATCCCAATTTCGCTATCTTTCATTTTTATGGCCATAATGTTCACATGGAACTATGGAACAATGAAGAAACACCAATTTGATGTTGAAAACAAGGTCTCAATGAGCAAGATGTTATCCTTAGGACCATGCTTAGGCATGGTCCGTGTCCCGGGAATCGGTCTCATTTTCAGTAATCTTGCTTCCGGTATCCCGGCTATTTTCGGTCATTTTATTACAAATTTACCTGCATTCCATCAGGTGTTAGTTTTTGTATGTGCTAAATCAGTTCAAGTCCCTTATGTCAGTGAAAATGAAAGATTAGTCATCAGCAGGATTGGTCCGAAGGAGTTCTACATGTTTCGGTGCATTGTCCGATACGGTTACAAAGACATGCAACAAGAGAATTACAATTTTGATAATAAATTGGTATCTGCAATAATACAGTTTATAGAAATAGAAGACAGTGTTCCAGAACAAACAAATGAATTGACTATAGATGATGGAAGAAACTTAAATATGGAAGATCTTGGTGGTTCACAACACACTTTGAAATTGAATTGGTCACATTCTGAAAATAATTGTTTACCATTTTCATGTGATGGCCAAGAACTTCGAGACGAGTCCTATAAAGTCGAGTCATTGCAGATTTTAAAAGCCAAAGAATCAGGTGTTACTTATATAGTTGGGCATTCCTATGCAGAGGCAAAAAAATCATCTTCCATTTTAAAGAAATTTGGAATAGATGTCGTTTATGCTTTTCTAAGCAAAAATTGCAGAGAACCTGATATTATGTTGGAAGTAGCTTATACTTCTTTGCTAGAAGTTGGTATGGTATACCATGTCTAA

Protein sequence

>MS.gene54170.t1

MNPSEQFVEQGISHQNLKRTTCANVLTLAYQSLGVVYGDLSTSPLYVYKTSFSGKLSLKEDDEEIFGVLSFIFWTFTIIALFKYVFIVMSADDNGEGGTFALYSLLCRHARLSILPNQQPTDENLSAYSTEDSADTWQSSLLKLFFEKHPRFQKGLLIFVLLGTCMTIGDGVITPAISVFSAVSGVQVKINQLHDNYVVIVSCIILVGLFSIQHHGTHRVSFMFAPVVAAWLLCISGIGIYNIFRWNRQVYRALSPVYMFRFLKTTGIEGWLSLSGVVLSITGVETMYADMGHFSALSIKIAFTCLVYPCLILAYMGEAAFLSKHHYDIERSFYKAIPEAVFWPVFIVATFAAVVGSQAVISATFSIISQCCALNCFPRVKIVHTSSKIYGQIYVPEINWILMCLCLAVTVGLRDTNMMGHAYASVCKIPEGGWIPISLSFIFMAIMFTWNYGTMKKHQFDVENKVSMSKMLSLGPCLGMVRVPGIGLIFSNLASGIPAIFGHFITNLPAFHQVLVFVCAKSVQVPYVSENERLVISRIGPKEFYMFRCIVRYGYKDMQQENYNFDNKLVSAIIQFIEIEDSVPEQTNELTIDDGRNLNMEDLGGSQHTLKLNWSHSENNCLPFSCDGQELRDESYKVESLQILKAKESGVTYIVGHSYAEAKKSSSILKKFGIDVVYAFLSKNCREPDIMLEVAYTSLLEVGMVYHV