Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene54265.t1 | XP_004497487.1 | 57.2 | 334 | 83 | 1 | 1 | 274 | 1 | 334 | 8.50E-99 | 370.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene54265.t1 | Q6Q3H3 | 44.3 | 314 | 119 | 2 | 17 | 274 | 22 | 335 | 3.8e-71 | 269.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene54265.t1 | A0A1S2Y0Q7 | 57.2 | 334 | 83 | 1 | 1 | 274 | 1 | 334 | 6.1e-99 | 370.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene060118 | MS.gene54265 | 0.88169 | 1.95E-70 | -1.69E-46 |
| MS.gene060119 | MS.gene54265 | 0.823862 | 1.10E-53 | -1.69E-46 |
| MS.gene060120 | MS.gene54265 | 0.816529 | 5.28E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene54265.t1 | MTR_6g008560 | 75.745 | 235 | 57 | 0 | 40 | 274 | 101 | 335 | 8.31e-131 | 382 |
| MS.gene54265.t1 | MTR_5g062230 | 75.745 | 235 | 57 | 0 | 40 | 274 | 97 | 331 | 1.56e-130 | 381 |
| MS.gene54265.t1 | MTR_5g094620 | 59.365 | 315 | 87 | 2 | 1 | 274 | 1 | 315 | 4.03e-128 | 374 |
| MS.gene54265.t1 | MTR_6g039440 | 74.894 | 235 | 59 | 0 | 40 | 274 | 97 | 331 | 1.02e-127 | 374 |
| MS.gene54265.t1 | MTR_4g048460 | 69.828 | 232 | 70 | 0 | 42 | 273 | 107 | 338 | 3.90e-121 | 354 |
| MS.gene54265.t1 | MTR_4g048460 | 69.528 | 233 | 71 | 0 | 42 | 274 | 107 | 339 | 4.31e-120 | 355 |
| MS.gene54265.t1 | MTR_3g464190 | 70.763 | 236 | 68 | 1 | 40 | 274 | 100 | 335 | 2.04e-117 | 348 |
| MS.gene54265.t1 | MTR_4g081460 | 66.383 | 235 | 79 | 0 | 40 | 274 | 106 | 340 | 3.64e-115 | 342 |
| MS.gene54265.t1 | MTR_5g073260 | 69.915 | 236 | 70 | 1 | 40 | 274 | 95 | 330 | 5.22e-115 | 341 |
| MS.gene54265.t1 | MTR_5g073200 | 70.339 | 236 | 69 | 1 | 40 | 274 | 92 | 327 | 1.87e-110 | 330 |
| MS.gene54265.t1 | MTR_6g008560 | 75.419 | 179 | 44 | 0 | 96 | 274 | 1 | 179 | 7.08e-97 | 290 |
| MS.gene54265.t1 | MTR_8g007515 | 56.757 | 222 | 94 | 1 | 53 | 272 | 110 | 331 | 1.03e-86 | 269 |
| MS.gene54265.t1 | MTR_2g082010 | 53.165 | 237 | 109 | 2 | 40 | 274 | 110 | 346 | 1.11e-86 | 269 |
| MS.gene54265.t1 | MTR_2g081980 | 52.119 | 236 | 110 | 3 | 42 | 274 | 99 | 334 | 5.37e-83 | 259 |
| MS.gene54265.t1 | MTR_2g082060 | 51.477 | 237 | 111 | 3 | 40 | 272 | 104 | 340 | 9.58e-83 | 258 |
| MS.gene54265.t1 | MTR_4g019550 | 51.271 | 236 | 113 | 2 | 41 | 274 | 106 | 341 | 1.54e-80 | 253 |
| MS.gene54265.t1 | MTR_4g045810 | 46.753 | 231 | 122 | 1 | 45 | 274 | 129 | 359 | 4.28e-68 | 221 |
| MS.gene54265.t1 | MTR_2g089120 | 43.220 | 236 | 131 | 1 | 42 | 274 | 109 | 344 | 8.25e-63 | 207 |
| MS.gene54265.t1 | MTR_2g089130 | 42.797 | 236 | 132 | 1 | 42 | 274 | 109 | 344 | 2.00e-61 | 203 |
| MS.gene54265.t1 | MTR_2g064425 | 45.374 | 227 | 123 | 1 | 49 | 274 | 139 | 365 | 5.07e-61 | 199 |
| MS.gene54265.t1 | MTR_2g064425 | 45.374 | 227 | 123 | 1 | 49 | 274 | 139 | 365 | 1.23e-59 | 199 |
| MS.gene54265.t1 | MTR_5g094530 | 70.000 | 130 | 35 | 2 | 106 | 232 | 1 | 129 | 3.72e-58 | 184 |
| MS.gene54265.t1 | MTR_8g057020 | 42.291 | 227 | 130 | 1 | 49 | 274 | 141 | 367 | 4.29e-55 | 187 |
| MS.gene54265.t1 | MTR_7g050990 | 66.418 | 134 | 36 | 1 | 140 | 273 | 28 | 152 | 1.81e-53 | 186 |
| MS.gene54265.t1 | MTR_2g082050 | 45.771 | 201 | 75 | 3 | 73 | 272 | 68 | 235 | 1.14e-52 | 178 |
| MS.gene54265.t1 | MTR_2g064425 | 40.586 | 239 | 137 | 4 | 38 | 274 | 115 | 350 | 7.78e-52 | 175 |
| MS.gene54265.t1 | MTR_2g064425 | 40.586 | 239 | 137 | 4 | 38 | 274 | 115 | 350 | 1.91e-50 | 174 |
| MS.gene54265.t1 | MTR_2g065450 | 40.351 | 228 | 134 | 1 | 49 | 274 | 142 | 369 | 1.97e-50 | 174 |
| MS.gene54265.t1 | MTR_4g092020 | 39.013 | 223 | 135 | 1 | 52 | 274 | 126 | 347 | 4.31e-44 | 157 |
| MS.gene54265.t1 | MTR_4g092010 | 34.454 | 238 | 152 | 2 | 38 | 274 | 106 | 340 | 5.15e-41 | 149 |
| MS.gene54265.t1 | MTR_2g010960 | 33.480 | 227 | 140 | 2 | 53 | 273 | 76 | 297 | 5.53e-37 | 137 |
| MS.gene54265.t1 | MTR_7g010710 | 32.766 | 235 | 151 | 4 | 42 | 272 | 99 | 330 | 3.02e-35 | 133 |
| MS.gene54265.t1 | MTR_6g064980 | 33.184 | 223 | 146 | 3 | 53 | 273 | 72 | 293 | 9.43e-34 | 128 |
| MS.gene54265.t1 | MTR_3g465090 | 32.432 | 222 | 149 | 1 | 53 | 273 | 72 | 293 | 4.21e-33 | 126 |
| MS.gene54265.t1 | MTR_3g063120 | 31.532 | 222 | 149 | 3 | 53 | 272 | 48 | 268 | 5.24e-31 | 120 |
| MS.gene54265.t1 | MTR_3g063170 | 31.390 | 223 | 150 | 3 | 53 | 273 | 72 | 293 | 7.26e-31 | 120 |
| MS.gene54265.t1 | MTR_3g063140 | 31.081 | 222 | 150 | 3 | 53 | 272 | 72 | 292 | 4.21e-30 | 118 |
| MS.gene54265.t1 | MTR_3g052120 | 28.862 | 246 | 166 | 4 | 31 | 274 | 56 | 294 | 1.41e-29 | 117 |
| MS.gene54265.t1 | MTR_3g063160 | 31.193 | 218 | 147 | 3 | 53 | 268 | 72 | 288 | 1.59e-29 | 113 |
| MS.gene54265.t1 | MTR_6g065040 | 31.937 | 191 | 127 | 3 | 85 | 273 | 2 | 191 | 6.83e-25 | 102 |
| MS.gene54265.t1 | MTR_7g094970 | 27.755 | 245 | 146 | 6 | 34 | 253 | 239 | 477 | 8.71e-21 | 92.0 |
| MS.gene54265.t1 | MTR_2g012870 | 28.270 | 237 | 152 | 5 | 53 | 272 | 298 | 533 | 1.08e-20 | 92.0 |
| MS.gene54265.t1 | MTR_2g064295 | 27.984 | 243 | 149 | 6 | 55 | 274 | 300 | 539 | 5.47e-20 | 89.7 |
| MS.gene54265.t1 | MTR_3g058160 | 27.572 | 243 | 150 | 6 | 55 | 274 | 109 | 348 | 1.92e-19 | 88.2 |
| MS.gene54265.t1 | MTR_3g058160 | 27.572 | 243 | 150 | 6 | 55 | 274 | 320 | 559 | 1.98e-19 | 88.2 |
| MS.gene54265.t1 | MTR_3g058160 | 27.572 | 243 | 150 | 6 | 55 | 274 | 300 | 539 | 2.06e-19 | 88.2 |
| MS.gene54265.t1 | MTR_3g058160 | 27.572 | 243 | 150 | 6 | 55 | 274 | 313 | 552 | 2.30e-19 | 88.2 |
| MS.gene54265.t1 | MTR_5g030050 | 29.150 | 247 | 147 | 8 | 30 | 252 | 15 | 257 | 2.33e-19 | 86.3 |
| MS.gene54265.t1 | MTR_7g011663 | 29.508 | 244 | 141 | 6 | 34 | 250 | 377 | 616 | 4.94e-19 | 87.0 |
| MS.gene54265.t1 | MTR_2g012900 | 25.926 | 243 | 151 | 7 | 57 | 272 | 307 | 547 | 3.85e-16 | 78.6 |
| MS.gene54265.t1 | MTR_7g011770 | 29.796 | 245 | 147 | 6 | 52 | 272 | 288 | 531 | 2.96e-15 | 75.9 |
| MS.gene54265.t1 | MTR_5g081730 | 36.364 | 110 | 65 | 1 | 93 | 197 | 2 | 111 | 4.54e-13 | 65.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene54265.t1 | AT5G23960 | 45.455 | 220 | 120 | 0 | 52 | 271 | 102 | 321 | 2.05e-68 | 221 |
| MS.gene54265.t1 | AT5G23960 | 45.045 | 222 | 122 | 0 | 52 | 273 | 102 | 323 | 1.01e-67 | 219 |
| MS.gene54265.t1 | AT1G70080 | 45.614 | 228 | 119 | 2 | 50 | 272 | 159 | 386 | 5.14e-66 | 216 |
| MS.gene54265.t1 | AT3G14490 | 43.103 | 232 | 128 | 1 | 47 | 274 | 148 | 379 | 2.20e-62 | 206 |
| MS.gene54265.t1 | AT1G31950 | 42.424 | 231 | 129 | 1 | 47 | 273 | 153 | 383 | 1.17e-60 | 200 |
| MS.gene54265.t1 | AT1G31950 | 42.424 | 231 | 129 | 1 | 47 | 273 | 152 | 382 | 4.33e-60 | 201 |
| MS.gene54265.t1 | AT1G31950 | 42.424 | 231 | 129 | 1 | 47 | 273 | 153 | 383 | 4.54e-60 | 201 |
| MS.gene54265.t1 | AT3G14540 | 42.979 | 235 | 130 | 1 | 44 | 274 | 144 | 378 | 1.39e-59 | 197 |
| MS.gene54265.t1 | AT4G15870 | 41.485 | 229 | 131 | 2 | 47 | 272 | 157 | 385 | 4.04e-59 | 198 |
| MS.gene54265.t1 | AT3G14540 | 42.979 | 235 | 130 | 1 | 44 | 274 | 144 | 378 | 7.06e-59 | 197 |
| MS.gene54265.t1 | AT5G44630 | 43.478 | 230 | 126 | 3 | 47 | 272 | 104 | 333 | 1.72e-58 | 195 |
| MS.gene54265.t1 | AT3G29410 | 43.478 | 230 | 128 | 2 | 47 | 274 | 47 | 276 | 1.31e-57 | 192 |
| MS.gene54265.t1 | AT4G20210 | 42.222 | 225 | 127 | 2 | 50 | 271 | 150 | 374 | 1.85e-57 | 193 |
| MS.gene54265.t1 | AT3G29190 | 41.778 | 225 | 128 | 2 | 50 | 271 | 151 | 375 | 2.15e-57 | 193 |
| MS.gene54265.t1 | AT3G14520 | 40.948 | 232 | 133 | 1 | 47 | 274 | 150 | 381 | 2.45e-57 | 193 |
| MS.gene54265.t1 | AT3G29410 | 43.478 | 230 | 128 | 2 | 47 | 274 | 152 | 381 | 5.74e-57 | 192 |
| MS.gene54265.t1 | AT4G20200 | 41.597 | 238 | 132 | 3 | 37 | 271 | 145 | 378 | 1.95e-56 | 191 |
| MS.gene54265.t1 | AT1G66020 | 40.789 | 228 | 132 | 2 | 50 | 274 | 148 | 375 | 1.38e-55 | 185 |
| MS.gene54265.t1 | AT4G16730 | 38.174 | 241 | 140 | 2 | 43 | 274 | 28 | 268 | 2.48e-55 | 186 |
| MS.gene54265.t1 | AT1G33750 | 42.291 | 227 | 128 | 2 | 48 | 272 | 154 | 379 | 2.54e-55 | 188 |
| MS.gene54265.t1 | AT4G16730 | 38.174 | 241 | 140 | 2 | 43 | 274 | 74 | 314 | 4.79e-55 | 186 |
| MS.gene54265.t1 | AT4G20230 | 39.076 | 238 | 138 | 3 | 37 | 271 | 145 | 378 | 1.11e-54 | 186 |
| MS.gene54265.t1 | AT4G20230 | 39.076 | 238 | 138 | 3 | 37 | 271 | 157 | 390 | 1.36e-54 | 186 |
| MS.gene54265.t1 | AT1G66020 | 40.789 | 228 | 132 | 2 | 50 | 274 | 148 | 375 | 4.01e-54 | 184 |
| MS.gene54265.t1 | AT3G32030 | 38.696 | 230 | 138 | 2 | 47 | 273 | 151 | 380 | 3.62e-51 | 177 |
| MS.gene54265.t1 | AT3G29110 | 41.228 | 228 | 131 | 3 | 47 | 271 | 144 | 371 | 4.72e-51 | 176 |
| MS.gene54265.t1 | AT4G13280 | 38.565 | 223 | 134 | 2 | 52 | 271 | 106 | 328 | 1.20e-48 | 169 |
| MS.gene54265.t1 | AT2G23230 | 38.559 | 236 | 139 | 4 | 43 | 272 | 139 | 374 | 1.41e-48 | 170 |
| MS.gene54265.t1 | AT2G23230 | 38.559 | 236 | 139 | 4 | 43 | 272 | 139 | 374 | 1.48e-48 | 170 |
| MS.gene54265.t1 | AT4G13300 | 38.053 | 226 | 137 | 2 | 50 | 272 | 104 | 329 | 1.90e-48 | 169 |
| MS.gene54265.t1 | AT4G13280 | 38.565 | 223 | 134 | 2 | 52 | 271 | 106 | 328 | 2.38e-48 | 168 |
| MS.gene54265.t1 | AT4G16740 | 37.118 | 229 | 132 | 3 | 52 | 274 | 123 | 345 | 8.83e-48 | 164 |
| MS.gene54265.t1 | AT1G48800 | 37.037 | 243 | 145 | 4 | 35 | 274 | 144 | 381 | 8.44e-47 | 165 |
| MS.gene54265.t1 | AT4G16740 | 37.118 | 229 | 132 | 3 | 52 | 274 | 123 | 345 | 2.45e-46 | 163 |
| MS.gene54265.t1 | AT2G24210 | 37.449 | 243 | 141 | 4 | 40 | 274 | 125 | 364 | 2.76e-46 | 163 |
| MS.gene54265.t1 | AT1G48820 | 41.709 | 199 | 112 | 3 | 77 | 272 | 156 | 353 | 8.95e-45 | 159 |
| MS.gene54265.t1 | AT4G16740 | 36.444 | 225 | 131 | 3 | 52 | 270 | 123 | 341 | 2.16e-44 | 154 |
| MS.gene54265.t1 | AT4G16740 | 36.444 | 225 | 131 | 3 | 52 | 270 | 123 | 341 | 2.16e-44 | 154 |
| MS.gene54265.t1 | AT3G25820 | 33.766 | 231 | 144 | 5 | 50 | 274 | 140 | 367 | 6.08e-44 | 154 |
| MS.gene54265.t1 | AT3G25830 | 33.766 | 231 | 144 | 5 | 50 | 274 | 140 | 367 | 5.43e-43 | 154 |
| MS.gene54265.t1 | AT3G25820 | 33.766 | 231 | 144 | 5 | 50 | 274 | 140 | 367 | 5.43e-43 | 154 |
| MS.gene54265.t1 | AT3G25820 | 33.040 | 227 | 143 | 5 | 50 | 270 | 140 | 363 | 3.29e-41 | 146 |
| MS.gene54265.t1 | AT3G25820 | 33.040 | 227 | 143 | 5 | 50 | 270 | 140 | 363 | 3.29e-41 | 146 |
| MS.gene54265.t1 | AT3G25810 | 33.061 | 245 | 150 | 5 | 41 | 274 | 128 | 369 | 3.58e-40 | 147 |
| MS.gene54265.t1 | AT1G61680 | 32.889 | 225 | 147 | 1 | 52 | 272 | 130 | 354 | 1.32e-37 | 139 |
| MS.gene54265.t1 | AT1G61680 | 32.000 | 225 | 142 | 2 | 52 | 272 | 130 | 347 | 3.09e-34 | 130 |
| MS.gene54265.t1 | AT5G48110 | 47.934 | 121 | 62 | 1 | 155 | 274 | 1 | 121 | 2.84e-33 | 124 |
| MS.gene54265.t1 | AT1G79460 | 29.963 | 267 | 148 | 9 | 37 | 274 | 300 | 556 | 2.75e-20 | 90.9 |
| MS.gene54265.t1 | AT4G02780 | 29.317 | 249 | 138 | 7 | 17 | 240 | 352 | 587 | 3.82e-17 | 81.6 |
| MS.gene54265.t1 | AT1G61120 | 25.000 | 236 | 164 | 3 | 49 | 272 | 329 | 563 | 2.49e-14 | 73.2 |
Find 0 sgRNAs with CRISPR-Local
Find 111 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TGATTATAAACTAATATTAA+TGG | + | 43203:26048-26067 | MS.gene54265:intron | 10.0% |
| !!! | CATTTTTTATGTTTTTAATT+TGG | + | 43203:25677-25696 | MS.gene54265:intron | 10.0% |
| !!! | TATTTTTTGTCTTTATATAT+AGG | + | 43203:26707-26726 | MS.gene54265:intron | 10.0% |
| !! | AATTGATAAACTAAAAAAGA+AGG | + | 43203:25391-25410 | MS.gene54265:intron | 15.0% |
| !! | ATAAAGACAAAAAATAGTAT+AGG | - | 43203:26703-26722 | MS.gene54265:intergenic | 15.0% |
| !! | ATGAGTAAATAAATAGTATA+AGG | - | 43203:25226-25245 | MS.gene54265:intergenic | 15.0% |
| !! | TAATATGAATGTCTAAAAAA+TGG | + | 43203:25809-25828 | MS.gene54265:intron | 15.0% |
| !!! | ATACTTTTATATTTTGATGT+AGG | - | 43203:26645-26664 | MS.gene54265:intergenic | 15.0% |
| !!! | ATTGTTGTTTAATATTATTG+TGG | + | 43203:26210-26229 | MS.gene54265:intron | 15.0% |
| !! | AAGACACTTAATTATTGTTA+TGG | - | 43203:25299-25318 | MS.gene54265:intergenic | 20.0% |
| !! | AATATTAATGGTATACATGT+AGG | + | 43203:26060-26079 | MS.gene54265:intron | 20.0% |
| !! | GAGAATAATTAAAAGAAATG+AGG | - | 43203:25985-26004 | MS.gene54265:intergenic | 20.0% |
| !!! | AATCAAAATGATTTTTAGGT+GGG | + | 43203:27201-27220 | MS.gene54265:intron | 20.0% |
| !!! | ATTGTTTTATCTCTAAAGTT+TGG | - | 43203:26998-27017 | MS.gene54265:intergenic | 20.0% |
| !!! | CTTTTTACTAAAAGATTTAC+AGG | - | 43203:25849-25868 | MS.gene54265:intergenic | 20.0% |
| !!! | TTGCAATCAAAATGATTTTT+AGG | + | 43203:27197-27216 | MS.gene54265:intron | 20.0% |
| !!! | TTTTTGTCTTTATATATAGG+TGG | + | 43203:26710-26729 | MS.gene54265:intron | 20.0% |
| ! | ATGCAAGTAGAATTTCATTA+TGG | - | 43203:26542-26561 | MS.gene54265:intergenic | 25.0% |
| ! | GTCATCAATGTATGATAAAA+TGG | - | 43203:26869-26888 | MS.gene54265:intergenic | 25.0% |
| ! | TAATGAAATTCTACTTGCAT+TGG | + | 43203:26542-26561 | MS.gene54265:CDS | 25.0% |
| ! | TACAAGAGTTATGTTCAAAA+TGG | + | 43203:25539-25558 | MS.gene54265:intron | 25.0% |
| ! | TGCAAGTAGAATTTCATTAT+GGG | - | 43203:26541-26560 | MS.gene54265:intergenic | 25.0% |
| ! | TGTTTATGAAGTACGAAAAA+GGG | - | 43203:26102-26121 | MS.gene54265:intergenic | 25.0% |
| ! | TTGAGTAAAACAAATTAGAG+TGG | + | 43203:25708-25727 | MS.gene54265:intron | 25.0% |
| !! | AATAAGTTGAGATATATACC+AGG | - | 43203:25644-25663 | MS.gene54265:intergenic | 25.0% |
| !! | AGACGAAATTAATCAAGTTT+TGG | + | 43203:25508-25527 | MS.gene54265:intron | 25.0% |
| !! | GTAATATTTGACTTTGTCAT+GGG | + | 43203:25780-25799 | MS.gene54265:intron | 25.0% |
| !! | TGAATTAGAACTTTTTACTC+AGG | + | 43203:26915-26934 | MS.gene54265:CDS | 25.0% |
| !! | TTCTTTTAACAATAGAGCAA+TGG | + | 43203:27168-27187 | MS.gene54265:intron | 25.0% |
| !!! | CAATCAAAATGATTTTTAGG+TGG | + | 43203:27200-27219 | MS.gene54265:intron | 25.0% |
| AAATGTGAGTAACTTGAATC+TGG | - | 43203:25202-25221 | MS.gene54264:intergenic | 30.0% | |
| AATGTGAGTAACTTGAATCT+GGG | - | 43203:25201-25220 | MS.gene54265:intergenic | 30.0% | |
| AATTTACCCATCTTCAATCT+TGG | + | 43203:27080-27099 | MS.gene54265:intron | 30.0% | |
| ATATTGGGGCTCAAAATATA+CGG | - | 43203:26812-26831 | MS.gene54265:intergenic | 30.0% | |
| ATGTGAACATTACACAGATA+AGG | - | 43203:25962-25981 | MS.gene54265:intergenic | 30.0% | |
| CATCAATCCTAATGAGAAAT+CGG | + | 43203:24995-25014 | MS.gene54265:CDS | 30.0% | |
| GGTTCATGGTGAAAAAATAT+TGG | + | 43203:26353-26372 | MS.gene54265:CDS | 30.0% | |
| GTGTTTATGAAGTACGAAAA+AGG | - | 43203:26103-26122 | MS.gene54265:intergenic | 30.0% | |
| TGGTGAAAAAATATTGGAAG+AGG | + | 43203:26359-26378 | MS.gene54265:CDS | 30.0% | |
| TTGTCTTTATATATAGGTGG+TGG | + | 43203:26713-26732 | MS.gene54265:intron | 30.0% | |
| TTTCCTTGCTTGAGAATATT+GGG | - | 43203:26827-26846 | MS.gene54265:intergenic | 30.0% | |
| ! | ATTGACTCAATATGTCGTTT+GGG | + | 43203:25467-25486 | MS.gene54265:intron | 30.0% |
| ! | CGTAATATTTGACTTTGTCA+TGG | + | 43203:25779-25798 | MS.gene54265:intron | 30.0% |
| ! | TTCCAAATTCCTTTTGATGT+AGG | - | 43203:26596-26615 | MS.gene54265:intergenic | 30.0% |
| ! | TTTTCCTTGCTTGAGAATAT+TGG | - | 43203:26828-26847 | MS.gene54265:intergenic | 30.0% |
| ! | TTTTGCTAAATGCAGTTCAT+AGG | + | 43203:25268-25287 | MS.gene54265:intron | 30.0% |
| ! | TTTTTACTCAGGCAATTGAA+AGG | + | 43203:26926-26945 | MS.gene54265:CDS | 30.0% |
| !! | AATAGTGATTGAAGAGTACT+AGG | + | 43203:25138-25157 | MS.gene54265:intron | 30.0% |
| !!! | AATCAAGTTGACTTTTTCCA+AGG | - | 43203:25450-25469 | MS.gene54265:intergenic | 30.0% |
| !!! | AGTAGTAGAATGTTGCTTTT+GGG | + | 43203:26780-26799 | MS.gene54265:CDS | 30.0% |
| !!! | ATCAAGTTGACTTTTTCCAA+GGG | - | 43203:25449-25468 | MS.gene54265:intergenic | 30.0% |
| AAAGATTTACAGGCTAACAG+TGG | - | 43203:25839-25858 | MS.gene54264:intergenic | 35.0% | |
| AACTTCAGTGAAACATTGGT+CGG | + | 43203:26285-26304 | MS.gene54265:CDS | 35.0% | |
| AGAACCTGATATGAATACTG+CGG | + | 43203:25364-25383 | MS.gene54265:intron | 35.0% | |
| AGATGTGTTCAACCAATTCA+AGG | + | 43203:26251-26270 | MS.gene54265:intron | 35.0% | |
| AGCCTACATCAAAAGGAATT+TGG | + | 43203:26591-26610 | MS.gene54265:CDS | 35.0% | |
| AGGAAACTTCAGTGAAACAT+TGG | + | 43203:26281-26300 | MS.gene54265:CDS | 35.0% | |
| GAATCTGGGCTAATATTAAG+TGG | - | 43203:25187-25206 | MS.gene54265:intergenic | 35.0% | |
| GATGACACATATGATGCATA+TGG | + | 43203:26883-26902 | MS.gene54265:CDS | 35.0% | |
| TAGCAACCAAGATTGAAGAT+GGG | - | 43203:27089-27108 | MS.gene54265:intergenic | 35.0% | |
| TCCTTATGCTTCAGAATCTA+TGG | + | 43203:25073-25092 | MS.gene54265:CDS | 35.0% | |
| TTAGCAACCAAGATTGAAGA+TGG | - | 43203:27090-27109 | MS.gene54265:intergenic | 35.0% | |
| TTCCTTGCTTGAGAATATTG+GGG | - | 43203:26826-26845 | MS.gene54265:intergenic | 35.0% | |
| TTTACTTGTGTTGCAAGAGA+AGG | - | 43203:26435-26454 | MS.gene54265:intergenic | 35.0% | |
| ! | AAAAATATTGGAAGAGGCGT+TGG | + | 43203:26365-26384 | MS.gene54265:CDS | 35.0% |
| ! | ATTCCTTTTGATGTAGGCTT+TGG | - | 43203:26590-26609 | MS.gene54265:intergenic | 35.0% |
| ! | CTAGTCATCAAGTTTAGAGT+TGG | + | 43203:27036-27055 | MS.gene54265:intron | 35.0% |
| ! | GATTGACTCAATATGTCGTT+TGG | + | 43203:25466-25485 | MS.gene54265:intron | 35.0% |
| ! | TCTACTTGCATTGGCAAAAT+TGG | + | 43203:26551-26570 | MS.gene54265:CDS | 35.0% |
| ! | TGCAAAACCGATTTCTCATT+AGG | - | 43203:25005-25024 | MS.gene54265:intergenic | 35.0% |
| !! | ACCATAGATTCTGAAGCATA+AGG | - | 43203:25077-25096 | MS.gene54265:intergenic | 35.0% |
| !! | ATTCTCTTGCTGTGCTATTT+AGG | + | 43203:25588-25607 | MS.gene54265:CDS | 35.0% |
| !! | CTTTATATATAGGTGGTGGA+AGG | + | 43203:26717-26736 | MS.gene54265:intron | 35.0% |
| !! | TTCTCTTGCTGTGCTATTTA+GGG | + | 43203:25589-25608 | MS.gene54265:CDS | 35.0% |
| !!! | GAGTAGTAGAATGTTGCTTT+TGG | + | 43203:26779-26798 | MS.gene54265:CDS | 35.0% |
| AAAAAATCTCCCCAAACGCT+AGG | - | 43203:25050-25069 | MS.gene54264:intergenic | 40.0% | |
| AAAAATCTCCCCAAACGCTA+GGG | - | 43203:25049-25068 | MS.gene54264:intergenic | 40.0% | |
| ACCATGAACCATCATATGTG+AGG | - | 43203:26343-26362 | MS.gene54265:intergenic | 40.0% | |
| ACTACTCTATCTCGTGCATA+CGG | - | 43203:26766-26785 | MS.gene54265:intergenic | 40.0% | |
| ATAGCACAGCAAGAGAATGA+AGG | - | 43203:25586-25605 | MS.gene54265:intergenic | 40.0% | |
| CTCAAAAACAGAGAAACCCT+TGG | + | 43203:25430-25449 | MS.gene54265:intron | 40.0% | |
| GGATGAATCTTGCTCATAGA+TGG | - | 43203:26520-26539 | MS.gene54265:intergenic | 40.0% | |
| GTATGAAGCCTCACATATGA+TGG | + | 43203:26332-26351 | MS.gene54265:CDS | 40.0% | |
| TTGCAAGAGAAGGACTCAAT+CGG | - | 43203:26425-26444 | MS.gene54265:intergenic | 40.0% | |
| TTTGCCGCAGTATTCATATC+AGG | - | 43203:25371-25390 | MS.gene54265:intergenic | 40.0% | |
| !! | AGGAGTGTCTTTCGTTTGAT+CGG | + | 43203:25919-25938 | MS.gene54265:intron | 40.0% |
| AACATTGGTCGGAGATGTTG+AGG | + | 43203:26296-26315 | MS.gene54265:CDS | 45.0% | |
| AACCAATTCAAGGACGAGCA+AGG | + | 43203:26261-26280 | MS.gene54265:CDS | 45.0% | |
| ACATTGGTCGGAGATGTTGA+GGG | + | 43203:26297-26316 | MS.gene54265:CDS | 45.0% | |
| AGATTTCCACCCTAGCGTTT+GGG | + | 43203:25037-25056 | MS.gene54265:CDS | 45.0% | |
| AGCCCCAATATTCTCAAGCA+AGG | + | 43203:26821-26840 | MS.gene54265:CDS | 45.0% | |
| CAAAAACTTGCCTAGGCTAG+TGG | + | 43203:26479-26498 | MS.gene54265:CDS | 45.0% | |
| CATGGACTTTACGTTTCACC+TGG | + | 43203:25623-25642 | MS.gene54265:CDS | 45.0% | |
| GCCTCACATATGATGGTTCA+TGG | + | 43203:26339-26358 | MS.gene54265:CDS | 45.0% | |
| GCTCCAAAGCCTACATCAAA+AGG | + | 43203:26584-26603 | MS.gene54265:CDS | 45.0% | |
| TGCAAGAGAAGGACTCAATC+GGG | - | 43203:26424-26443 | MS.gene54265:intergenic | 45.0% | |
| TTCCTTGCTCGTCCTTGAAT+TGG | - | 43203:26266-26285 | MS.gene54265:intergenic | 45.0% | |
| ! | TAACTTCTTGCCACTAGCCT+AGG | - | 43203:26492-26511 | MS.gene54265:intergenic | 45.0% |
| !! | ATATAGGTGGTGGAAGGAGT+TGG | + | 43203:26723-26742 | MS.gene54265:intron | 45.0% |
| !! | CTGTGCTATTTAGGGTGTTG+AGG | + | 43203:25597-25616 | MS.gene54265:CDS | 45.0% |
| !! | TTTAGGGTGTTGAGGCAACA+TGG | + | 43203:25605-25624 | MS.gene54265:CDS | 45.0% |
| !!! | AATTTTTTTTTACATAAAAT+AGG | + | 43203:25899-25918 | MS.gene54265:intron | 5.0% |
| AAGAGAAGGACTCAATCGGG+TGG | - | 43203:26421-26440 | MS.gene54265:intergenic | 50.0% | |
| CAGATTTCCACCCTAGCGTT+TGG | + | 43203:25036-25055 | MS.gene54265:CDS | 50.0% | |
| CTCTGCGCAAAAACTTGCCT+AGG | + | 43203:26472-26491 | MS.gene54265:CDS | 50.0% | |
| GATTTCCACCCTAGCGTTTG+GGG | + | 43203:25038-25057 | MS.gene54265:CDS | 50.0% | |
| TTCTGGTCACCTTGAGTCCA+TGG | + | 43203:26395-26414 | MS.gene54265:CDS | 50.0% | |
| !!! | GAGGCGTTGGCTTTTACTTC+TGG | + | 43203:26378-26397 | MS.gene54265:CDS | 50.0% |
| AATCTCCCCAAACGCTAGGG+TGG | - | 43203:25046-25065 | MS.gene54265:intergenic | 55.0% | |
| AGGACTCAATCGGGTGGCCA+TGG | - | 43203:26415-26434 | MS.gene54265:intergenic | 60.0% | |
| ATCGGGTGGCCATGGACTCA+AGG | - | 43203:26407-26426 | MS.gene54265:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| 43203 | gene | 24978 | 27234 | 24978 | ID=MS.gene54265 |
| 43203 | mRNA | 24978 | 27234 | 24978 | ID=MS.gene54265.t1;Parent=MS.gene54265 |
| 43203 | exon | 24978 | 25094 | 24978 | ID=MS.gene54265.t1.exon1;Parent=MS.gene54265.t1 |
| 43203 | CDS | 24978 | 25094 | 24978 | ID=cds.MS.gene54265.t1;Parent=MS.gene54265.t1 |
| 43203 | exon | 25545 | 25644 | 25545 | ID=MS.gene54265.t1.exon2;Parent=MS.gene54265.t1 |
| 43203 | CDS | 25545 | 25644 | 25545 | ID=cds.MS.gene54265.t1;Parent=MS.gene54265.t1 |
| 43203 | exon | 26253 | 26625 | 26253 | ID=MS.gene54265.t1.exon3;Parent=MS.gene54265.t1 |
| 43203 | CDS | 26253 | 26625 | 26253 | ID=cds.MS.gene54265.t1;Parent=MS.gene54265.t1 |
| 43203 | exon | 26729 | 26947 | 26729 | ID=MS.gene54265.t1.exon4;Parent=MS.gene54265.t1 |
| 43203 | CDS | 26729 | 26947 | 26729 | ID=cds.MS.gene54265.t1;Parent=MS.gene54265.t1 |
| 43203 | exon | 27219 | 27234 | 27219 | ID=MS.gene54265.t1.exon5;Parent=MS.gene54265.t1 |
| 43203 | CDS | 27219 | 27234 | 27219 | ID=cds.MS.gene54265.t1;Parent=MS.gene54265.t1 |
| Gene Sequence |
| Protein sequence |
