Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene060119.t1 | XP_004497487.1 | 70.5 | 549 | 162 | 0 | 3 | 551 | 8 | 556 | 3.20E-230 | 807.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene060119.t1 | B9SCB6 | 50.4 | 544 | 266 | 2 | 5 | 548 | 10 | 549 | 3.2e-162 | 573.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene060119.t1 | A0A1S2Y0Q7 | 70.5 | 549 | 162 | 0 | 3 | 551 | 8 | 556 | 2.3e-230 | 807.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene060118 | MS.gene060119 | 0.889321 | 2.69E-73 | -1.69E-46 |
| MS.gene060119 | MS.gene060120 | 0.972583 | 5.29E-135 | -1.69E-46 |
| MS.gene060119 | MS.gene062682 | 0.805148 | 1.53E-49 | -1.69E-46 |
| MS.gene060119 | MS.gene062686 | 0.814094 | 1.84E-51 | -1.69E-46 |
| MS.gene060119 | MS.gene068432 | 0.836337 | 9.93E-57 | -1.69E-46 |
| MS.gene060119 | MS.gene068435 | 0.801811 | 7.55E-49 | -1.69E-46 |
| MS.gene060119 | MS.gene068436 | 0.810565 | 1.08E-50 | -1.69E-46 |
| MS.gene060119 | MS.gene54248 | 0.808689 | 2.74E-50 | -1.69E-46 |
| MS.gene060119 | MS.gene54262 | 0.838581 | 2.64E-57 | -1.69E-46 |
| MS.gene060119 | MS.gene54263 | 0.886588 | 3.00E-72 | -1.69E-46 |
| MS.gene060119 | MS.gene54264 | 0.935066 | 1.52E-96 | -1.69E-46 |
| MS.gene060119 | MS.gene54265 | 0.823862 | 1.10E-53 | -1.69E-46 |
| MS.gene060119 | MS.gene54266 | 0.890057 | 1.39E-73 | -1.69E-46 |
| MS.gene060119 | MS.gene54267 | 0.918375 | 1.68E-86 | -1.69E-46 |
| MS.gene060119 | MS.gene54268 | 0.935146 | 1.34E-96 | -1.69E-46 |
| MS.gene060119 | MS.gene54269 | 0.807082 | 6.01E-50 | -1.69E-46 |
| MS.gene060119 | MS.gene54270 | 0.836341 | 9.90E-57 | -1.69E-46 |
| MS.gene060119 | MS.gene88992 | 0.970298 | 2.10E-131 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 0 sgRNAs with CRISPR-Local
Find 176 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATATAAAATAAACGTTAAT+AGG | + | 43206:9311-9330 | MS.gene060119:intergenic | 10.0% |
| !! | TGATTATAAACTAATATTAA+TGG | - | 43206:7292-7311 | MS.gene060119:intron | 10.0% |
| !!! | CTTTTTTTATGTTTTTAATT+TGG | - | 43206:6923-6942 | MS.gene060119:intron | 10.0% |
| !!! | TATTTTTTGTCTTTATATAT+AGG | - | 43206:7951-7970 | MS.gene060119:intron | 10.0% |
| !! | AATTGATAAACTAAAAAAGA+AGG | - | 43206:6637-6656 | MS.gene060119:intron | 15.0% |
| !! | ATAAAGACAAAAAATAGTAT+AGG | + | 43206:7947-7966 | MS.gene060119:intergenic | 15.0% |
| !! | ATGAGTAAATAAATAGTATA+AGG | + | 43206:6472-6491 | MS.gene060119:intergenic | 15.0% |
| !! | TAATATGAATGTCTAAAAAA+TGG | - | 43206:7055-7074 | MS.gene060119:intron | 15.0% |
| !! | TTAACAACATTTAATTACAT+AGG | - | 43206:9269-9288 | MS.gene060119:intron | 15.0% |
| !!! | AAACATTTTTACATCATTTT+AGG | - | 43206:8805-8824 | MS.gene060119:intron | 15.0% |
| !!! | ATACTTTTATATTTTGATGT+AGG | + | 43206:7889-7908 | MS.gene060119:intergenic | 15.0% |
| !!! | ATTGTTGTTTAATATTATTG+TGG | - | 43206:7454-7473 | MS.gene060119:intron | 15.0% |
| !!! | ATTTCATTTTAAACTTTGTA+TGG | - | 43206:8704-8723 | MS.gene060119:CDS | 15.0% |
| !! | AAGAAAAATGTATCATCATT+AGG | - | 43206:9020-9039 | MS.gene060119:intron | 20.0% |
| !! | AAGACACTTAATTATTGTTA+TGG | + | 43206:6545-6564 | MS.gene060119:intergenic | 20.0% |
| !! | AATATTAATGGTATACATGT+AGG | - | 43206:7304-7323 | MS.gene060119:intron | 20.0% |
| !! | GAGAATAATTAAAAGAAATG+AGG | + | 43206:7231-7250 | MS.gene060119:intergenic | 20.0% |
| !! | TGTAAAAAACTTATTATCCA+CGG | - | 43206:8944-8963 | MS.gene060119:intron | 20.0% |
| !! | TTGCAGAATTAATATTACAA+AGG | + | 43206:9186-9205 | MS.gene060119:intergenic | 20.0% |
| !!! | AATCAAAATGATTTTTAGGT+GGG | - | 43206:8445-8464 | MS.gene060119:CDS | 20.0% |
| !!! | ATTGTTTTATCTCTAAAGTT+TGG | + | 43206:8242-8261 | MS.gene060119:intergenic | 20.0% |
| !!! | CTTTTTACTAAAAGATTTAC+AGG | + | 43206:7095-7114 | MS.gene060119:intergenic | 20.0% |
| !!! | TATATGTTTTGAATACATAC+AGG | - | 43206:6589-6608 | MS.gene060119:intron | 20.0% |
| !!! | TATCTTGACATTTTAATTAG+TGG | - | 43206:9212-9231 | MS.gene060119:intron | 20.0% |
| !!! | TTGCAATCAAAATGATTTTT+AGG | - | 43206:8441-8460 | MS.gene060119:CDS | 20.0% |
| !!! | TTTTTGTCTTTATATATAGG+TGG | - | 43206:7954-7973 | MS.gene060119:intron | 20.0% |
| ! | AAACTTTGTATGGTTATCAA+AGG | - | 43206:8714-8733 | MS.gene060119:CDS | 25.0% |
| ! | AACTTTGTATGGTTATCAAA+GGG | - | 43206:8715-8734 | MS.gene060119:CDS | 25.0% |
| ! | ATGAAATCTTTGTTCAATTG+TGG | + | 43206:8691-8710 | MS.gene060119:intergenic | 25.0% |
| ! | ATGCAAGTAGAATTTCATTA+TGG | + | 43206:7786-7805 | MS.gene060119:intergenic | 25.0% |
| ! | GTCATCAATGTATGATAAAA+TGG | + | 43206:8113-8132 | MS.gene060119:intergenic | 25.0% |
| ! | TAATGAAATTCTACTTGCAT+TGG | - | 43206:7786-7805 | MS.gene060119:intron | 25.0% |
| ! | TACAAGAGTTATGTTCAAAA+TGG | - | 43206:6785-6804 | MS.gene060119:CDS | 25.0% |
| ! | TGCAAAAAACTTATTATCCA+TGG | - | 43206:9100-9119 | MS.gene060119:intron | 25.0% |
| ! | TGCAAGTAGAATTTCATTAT+GGG | + | 43206:7785-7804 | MS.gene060119:intergenic | 25.0% |
| ! | TTGAGTAAAACAAATTAGAG+TGG | - | 43206:6954-6973 | MS.gene060119:intron | 25.0% |
| !! | AATAAGTTGAGATATATACC+AGG | + | 43206:6890-6909 | MS.gene060119:intergenic | 25.0% |
| !! | AGACGAAATTAATCAAGTTT+TGG | - | 43206:6754-6773 | MS.gene060119:CDS | 25.0% |
| !! | GTAATATTTGACTTTGTCAT+GGG | - | 43206:7026-7045 | MS.gene060119:intron | 25.0% |
| !! | TCATGAAGATACATTTTTCT+TGG | + | 43206:8866-8885 | MS.gene060119:intergenic | 25.0% |
| !! | TGAATTAGAACTTTTTACTC+AGG | - | 43206:8159-8178 | MS.gene060119:CDS | 25.0% |
| !! | TTCTTTTAACAATAGAGCAA+TGG | - | 43206:8412-8431 | MS.gene060119:CDS | 25.0% |
| !!! | AACTCTTACTTCTTTTAAGA+AGG | + | 43206:8591-8610 | MS.gene060119:intergenic | 25.0% |
| !!! | ACTCTTACTTCTTTTAAGAA+GGG | + | 43206:8590-8609 | MS.gene060119:intergenic | 25.0% |
| !!! | CAATCAAAATGATTTTTAGG+TGG | - | 43206:8444-8463 | MS.gene060119:CDS | 25.0% |
| AAAAGAAAATTGACAACGCT+TGG | - | 43206:9798-9817 | MS.gene060119:intron | 30.0% | |
| AAATGTGAGTAACTTGAATC+TGG | + | 43206:6448-6467 | MS.gene060119:intergenic | 30.0% | |
| AATGTGAGTAACTTGAATCT+GGG | + | 43206:6447-6466 | MS.gene060119:intergenic | 30.0% | |
| AATTTACCCATCTTCAATCT+TGG | - | 43206:8324-8343 | MS.gene060119:intron | 30.0% | |
| ATATTGGGGCTCAAAATATA+CGG | + | 43206:8056-8075 | MS.gene060119:intergenic | 30.0% | |
| ATGTGAACATTACACAGATA+AGG | + | 43206:7208-7227 | MS.gene060119:intergenic | 30.0% | |
| CACATATCAACAATATCAAG+TGG | - | 43206:9427-9446 | MS.gene060119:CDS | 30.0% | |
| CATCAATCCTAATGAGAAAT+CGG | - | 43206:6241-6260 | MS.gene060119:CDS | 30.0% | |
| GAACAAGAAATGAAGAAAGA+AGG | - | 43206:8545-8564 | MS.gene060119:CDS | 30.0% | |
| GAGGGAATATGATTTGAATA+GGG | - | 43206:9754-9773 | MS.gene060119:intron | 30.0% | |
| GGTTCATGGTGAAAAAATAT+TGG | - | 43206:7597-7616 | MS.gene060119:intron | 30.0% | |
| GTACTTGGAATGTTATATGA+GGG | - | 43206:9736-9755 | MS.gene060119:intron | 30.0% | |
| TAACTATATACCAACAACAG+AGG | - | 43206:9396-9415 | MS.gene060119:CDS | 30.0% | |
| TGAGGGAATATGATTTGAAT+AGG | - | 43206:9753-9772 | MS.gene060119:intron | 30.0% | |
| TGGTGAAAAAATATTGGAAG+AGG | - | 43206:7603-7622 | MS.gene060119:intron | 30.0% | |
| TTGTCTTTATATATAGGTGG+TGG | - | 43206:7957-7976 | MS.gene060119:intron | 30.0% | |
| TTTCCTTGCTTGAGAATATT+GGG | + | 43206:8071-8090 | MS.gene060119:intergenic | 30.0% | |
| ! | AAAGTATCACCATAATGACT+TGG | - | 43206:8840-8859 | MS.gene060119:intron | 30.0% |
| ! | ATTGACTCAATATGTCGTTT+GGG | - | 43206:6713-6732 | MS.gene060119:CDS | 30.0% |
| ! | CGTAATATTTGACTTTGTCA+TGG | - | 43206:7025-7044 | MS.gene060119:intron | 30.0% |
| ! | GTTGCTTTATAAATCACTCT+TGG | - | 43206:8505-8524 | MS.gene060119:CDS | 30.0% |
| ! | TTCCAAATTCCTTTTGATGT+AGG | + | 43206:7840-7859 | MS.gene060119:intergenic | 30.0% |
| ! | TTTCTTTTGGCATTCTTGAA+TGG | + | 43206:9786-9805 | MS.gene060119:intergenic | 30.0% |
| ! | TTTTCCTTGCTTGAGAATAT+TGG | + | 43206:8072-8091 | MS.gene060119:intergenic | 30.0% |
| ! | TTTTGCTAAATGCAGTTCAT+AGG | - | 43206:6514-6533 | MS.gene060119:intron | 30.0% |
| ! | TTTTTACTCAGGCAATTGAA+AGG | - | 43206:8170-8189 | MS.gene060119:CDS | 30.0% |
| !! | AAGCGTTGTCAATTTTCTTT+TGG | + | 43206:9799-9818 | MS.gene060119:intergenic | 30.0% |
| !! | AATAGTGATTGAAGAGTACT+AGG | - | 43206:6384-6403 | MS.gene060119:CDS | 30.0% |
| !! | CTCTTACTTCTTTTAAGAAG+GGG | + | 43206:8589-8608 | MS.gene060119:intergenic | 30.0% |
| !! | TGTTTCTGAAGTACGAAAAA+GGG | + | 43206:7346-7365 | MS.gene060119:intergenic | 30.0% |
| !!! | AATCAAGTTGACTTTTTCCA+AGG | + | 43206:6696-6715 | MS.gene060119:intergenic | 30.0% |
| !!! | AGTAGTAGAATGTTGCTTTT+GGG | - | 43206:8024-8043 | MS.gene060119:intron | 30.0% |
| !!! | ATCAAGTTGACTTTTTCCAA+GGG | + | 43206:6695-6714 | MS.gene060119:intergenic | 30.0% |
| !!! | TATCCACGGTTTTATTAACT+CGG | - | 43206:8958-8977 | MS.gene060119:intron | 30.0% |
| AAACAGTTTGAGCAGAAAAG+AGG | - | 43206:9701-9720 | MS.gene060119:intron | 35.0% | |
| AAAGATTTACAGGCTAACAG+TGG | + | 43206:7085-7104 | MS.gene060119:intergenic | 35.0% | |
| AATCCAAGCTTATATGAGTG+AGG | - | 43206:9357-9376 | MS.gene060119:CDS | 35.0% | |
| ACACACGTAAGAATAGGTAA+TGG | + | 43206:9863-9882 | MS.gene060119:intergenic | 35.0% | |
| ACGACTTCTTACATTGGAAT+GGG | - | 43206:9466-9485 | MS.gene060119:CDS | 35.0% | |
| AGATGTGTTCAACCAATTCA+AGG | - | 43206:7495-7514 | MS.gene060119:intron | 35.0% | |
| AGCCTACATCAAAAGGAATT+TGG | - | 43206:7835-7854 | MS.gene060119:intron | 35.0% | |
| AGGAAACTTCAGTGAAACAT+TGG | - | 43206:7525-7544 | MS.gene060119:intron | 35.0% | |
| CGCTTGGAAAGATATAAATC+AGG | - | 43206:9814-9833 | MS.gene060119:intron | 35.0% | |
| CGTACTTGGAATGTTATATG+AGG | - | 43206:9735-9754 | MS.gene060119:intron | 35.0% | |
| GAACTGAGTTCATATAACCA+TGG | + | 43206:9120-9139 | MS.gene060119:intergenic | 35.0% | |
| GAATCTGGGCTAATATTAAG+TGG | + | 43206:6433-6452 | MS.gene060119:intergenic | 35.0% | |
| GACAAAAGACATCTTTGACT+GGG | - | 43206:9498-9517 | MS.gene060119:CDS | 35.0% | |
| GATGACACATATGATGCATA+TGG | - | 43206:8127-8146 | MS.gene060119:CDS | 35.0% | |
| TAAAGCAACTTCGTGTAATC+CGG | + | 43206:8494-8513 | MS.gene060119:intergenic | 35.0% | |
| TACGACTTCTTACATTGGAA+TGG | - | 43206:9465-9484 | MS.gene060119:CDS | 35.0% | |
| TAGCAACCAAGATTGAAGAT+GGG | + | 43206:8333-8352 | MS.gene060119:intergenic | 35.0% | |
| TAGGTGGGATATTAATTGCT+TGG | - | 43206:8460-8479 | MS.gene060119:CDS | 35.0% | |
| TCCTTATGCTTCAGAATCTA+TGG | - | 43206:6319-6338 | MS.gene060119:CDS | 35.0% | |
| TGGTTATCAAAGGGAAGTTT+AGG | - | 43206:8724-8743 | MS.gene060119:intron | 35.0% | |
| TTAGCAACCAAGATTGAAGA+TGG | + | 43206:8334-8353 | MS.gene060119:intergenic | 35.0% | |
| TTCCTTGCTTGAGAATATTG+GGG | + | 43206:8070-8089 | MS.gene060119:intergenic | 35.0% | |
| TTGAGAACACACGTAAGAAT+AGG | + | 43206:9869-9888 | MS.gene060119:intergenic | 35.0% | |
| TTTACTTGTGTTGCAAGAGA+AGG | + | 43206:7679-7698 | MS.gene060119:intergenic | 35.0% | |
| ! | AAAAATATTGGAAGAGGCGT+TGG | - | 43206:7609-7628 | MS.gene060119:intron | 35.0% |
| ! | ATTCCTTTTGATGTAGGCTT+TGG | + | 43206:7834-7853 | MS.gene060119:intergenic | 35.0% |
| ! | CTAGTCATCAAGTTTAGAGT+TGG | - | 43206:8280-8299 | MS.gene060119:intron | 35.0% |
| ! | GATTGACTCAATATGTCGTT+TGG | - | 43206:6712-6731 | MS.gene060119:CDS | 35.0% |
| ! | GCAGCAGCATTAACAATTTT+TGG | + | 43206:9535-9554 | MS.gene060119:intergenic | 35.0% |
| ! | TCTACTTGCATTGGCAAAAT+TGG | - | 43206:7795-7814 | MS.gene060119:intron | 35.0% |
| ! | TGCAAAACCGATTTCTCATT+AGG | + | 43206:6251-6270 | MS.gene060119:intergenic | 35.0% |
| ! | TTTTCTTGGCCAAGTCATTA+TGG | + | 43206:8852-8871 | MS.gene060119:intergenic | 35.0% |
| !! | ACCATAGATTCTGAAGCATA+AGG | + | 43206:6323-6342 | MS.gene060119:intergenic | 35.0% |
| !! | ATAGGTAATGGAACTTCAGT+TGG | + | 43206:9851-9870 | MS.gene060119:intergenic | 35.0% |
| !! | ATTCTCTTGCTGTGCTATTT+AGG | - | 43206:6834-6853 | MS.gene060119:CDS | 35.0% |
| !! | CTTTATATATAGGTGGTGGA+AGG | - | 43206:7961-7980 | MS.gene060119:intron | 35.0% |
| !! | GTGTTTCTGAAGTACGAAAA+AGG | + | 43206:7347-7366 | MS.gene060119:intergenic | 35.0% |
| !! | TTCTCTTGCTGTGCTATTTA+GGG | - | 43206:6835-6854 | MS.gene060119:CDS | 35.0% |
| !! | TTCTTTTAAGAAGGGGTCAA+GGG | + | 43206:8582-8601 | MS.gene060119:intergenic | 35.0% |
| !!! | GAGTAGTAGAATGTTGCTTT+TGG | - | 43206:8023-8042 | MS.gene060119:intron | 35.0% |
| AAAAAATCTCCCCAAACGCT+AGG | + | 43206:6296-6315 | MS.gene060118:intergenic | 40.0% | |
| AAAAATCTCCCCAAACGCTA+GGG | + | 43206:6295-6314 | MS.gene060118:intergenic | 40.0% | |
| AACATTGGTCAGAGATGTTG+AGG | - | 43206:7540-7559 | MS.gene060119:intron | 40.0% | |
| ACATTGGTCAGAGATGTTGA+GGG | - | 43206:7541-7560 | MS.gene060119:intron | 40.0% | |
| ACCATGAACCATCATATGTG+AGG | + | 43206:7587-7606 | MS.gene060119:intergenic | 40.0% | |
| ACTACTCTATCTCGTGCATA+CGG | + | 43206:8010-8029 | MS.gene060119:intergenic | 40.0% | |
| AGGACATGTTTCTTCGTACT+TGG | - | 43206:9721-9740 | MS.gene060119:intron | 40.0% | |
| ATAGCACAGCAAGAGAATGA+AGG | + | 43206:6832-6851 | MS.gene060119:intergenic | 40.0% | |
| ATAGTTAGCATTCAGCCATC+TGG | + | 43206:9383-9402 | MS.gene060119:intergenic | 40.0% | |
| CGACAAAAGACATCTTTGAC+TGG | - | 43206:9497-9516 | MS.gene060119:CDS | 40.0% | |
| CTCAAAAACAGAGAAACCCT+TGG | - | 43206:6676-6695 | MS.gene060119:CDS | 40.0% | |
| GAACCGAGTTAATAAAACCG+TGG | + | 43206:8964-8983 | MS.gene060119:intergenic | 40.0% | |
| GATAACTACACACACTCTGA+CGG | - | 43206:9926-9945 | MS.gene060119:CDS | 40.0% | |
| GGAACCTGATATGAATACTG+CGG | - | 43206:6610-6629 | MS.gene060119:intron | 40.0% | |
| GGATGAATCTTGCTCATAGA+TGG | + | 43206:7764-7783 | MS.gene060119:intergenic | 40.0% | |
| GTATGAAGCCTCACATATGA+TGG | - | 43206:7576-7595 | MS.gene060119:intron | 40.0% | |
| GTGGGATATTAATTGCTTGG+AGG | - | 43206:8463-8482 | MS.gene060119:CDS | 40.0% | |
| TAATTGCTTGGAGGATCTTC+CGG | - | 43206:8472-8491 | MS.gene060119:CDS | 40.0% | |
| TGCTATACATTGCAGGCTTA+GGG | - | 43206:9552-9571 | MS.gene060119:CDS | 40.0% | |
| TTGCAAGAGAAGGACTCAAT+CGG | + | 43206:7669-7688 | MS.gene060119:intergenic | 40.0% | |
| TTGGCTACGACTTCTTACAT+TGG | - | 43206:9460-9479 | MS.gene060119:CDS | 40.0% | |
| TTTGCCGCAGTATTCATATC+AGG | + | 43206:6617-6636 | MS.gene060119:intergenic | 40.0% | |
| !! | AGGAGTGTCTTTCGTTTGAT+CGG | - | 43206:7165-7184 | MS.gene060119:intron | 40.0% |
| !! | CAATCTCTCGCGTTTTATTG+AGG | - | 43206:9886-9905 | MS.gene060119:intron | 40.0% |
| !! | CTTCTTTTAAGAAGGGGTCA+AGG | + | 43206:8583-8602 | MS.gene060119:intergenic | 40.0% |
| AACCAATTCAAGGACGAGCA+AGG | - | 43206:7505-7524 | MS.gene060119:intron | 45.0% | |
| AAGAAGTCGTAGCCAACACT+GGG | + | 43206:9456-9475 | MS.gene060119:intergenic | 45.0% | |
| AGATTTCCACCCTAGCGTTT+GGG | - | 43206:6283-6302 | MS.gene060119:CDS | 45.0% | |
| AGCCCCAATATTCTCAAGCA+AGG | - | 43206:8065-8084 | MS.gene060119:CDS | 45.0% | |
| ATCAAGTGGTTACCCAGTGT+TGG | - | 43206:9441-9460 | MS.gene060119:CDS | 45.0% | |
| ATGCTGCTGCTATACATTGC+AGG | - | 43206:9545-9564 | MS.gene060119:CDS | 45.0% | |
| CAAAAACTTGCCTAGGCTAG+TGG | - | 43206:7723-7742 | MS.gene060119:CDS | 45.0% | |
| CATGGACTTTACGTTTCACC+TGG | - | 43206:6869-6888 | MS.gene060119:CDS | 45.0% | |
| CTGCTATACATTGCAGGCTT+AGG | - | 43206:9551-9570 | MS.gene060119:CDS | 45.0% | |
| CTTATATGAGTGAGGCCAGA+TGG | - | 43206:9365-9384 | MS.gene060119:CDS | 45.0% | |
| GCCTCACATATGATGGTTCA+TGG | - | 43206:7583-7602 | MS.gene060119:intron | 45.0% | |
| GCTCCAAAGCCTACATCAAA+AGG | - | 43206:7828-7847 | MS.gene060119:intron | 45.0% | |
| GGATGAAATTGTGTCAAGCG+AGG | - | 43206:9573-9592 | MS.gene060119:CDS | 45.0% | |
| TAAGAAGTCGTAGCCAACAC+TGG | + | 43206:9457-9476 | MS.gene060119:intergenic | 45.0% | |
| TGCAAGAGAAGGACTCAATC+GGG | + | 43206:7668-7687 | MS.gene060119:intergenic | 45.0% | |
| TGCATGTACTCCTCTGTTGT+TGG | + | 43206:9409-9428 | MS.gene060119:intergenic | 45.0% | |
| TGGCCTCACTCATATAAGCT+TGG | + | 43206:9363-9382 | MS.gene060119:intergenic | 45.0% | |
| TTCCTTGCTCGTCCTTGAAT+TGG | + | 43206:7510-7529 | MS.gene060119:intergenic | 45.0% | |
| ! | TAACTTCTTGCCACTAGCCT+AGG | + | 43206:7736-7755 | MS.gene060119:intergenic | 45.0% |
| !! | ATATAGGTGGTGGAAGGAGT+TGG | - | 43206:7967-7986 | MS.gene060119:intron | 45.0% |
| !! | CTGTGCTATTTAGGGTGTTG+AGG | - | 43206:6843-6862 | MS.gene060119:CDS | 45.0% |
| !! | TTTAGGGTGTTGAGGCAACA+TGG | - | 43206:6851-6870 | MS.gene060119:CDS | 45.0% |
| !!! | AATTTTTTTTTACATAAAAT+AGG | - | 43206:7145-7164 | MS.gene060119:intron | 5.0% |
| AAGAGAAGGACTCAATCGGG+TGG | + | 43206:7665-7684 | MS.gene060119:intergenic | 50.0% | |
| CAGATTTCCACCCTAGCGTT+TGG | - | 43206:6282-6301 | MS.gene060119:CDS | 50.0% | |
| CTCTGCGCAAAAACTTGCCT+AGG | - | 43206:7716-7735 | MS.gene060119:CDS | 50.0% | |
| GATTTCCACCCTAGCGTTTG+GGG | - | 43206:6284-6303 | MS.gene060119:CDS | 50.0% | |
| TTCTGGTCACCTTGAGTCCA+TGG | - | 43206:7639-7658 | MS.gene060119:CDS | 50.0% | |
| !!! | GAGGCGTTGGCTTTTACTTC+TGG | - | 43206:7622-7641 | MS.gene060119:intron | 50.0% |
| AATCTCCCCAAACGCTAGGG+TGG | + | 43206:6292-6311 | MS.gene060119:intergenic | 55.0% | |
| AGGACTCAATCGGGTGGCCA+TGG | + | 43206:7659-7678 | MS.gene060119:intergenic | 60.0% | |
| ATCGGGTGGCCATGGACTCA+AGG | + | 43206:7651-7670 | MS.gene060119:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| 43206 | gene | 6237 | 10000 | 6237 | ID=MS.gene060119 |
| 43206 | mRNA | 6237 | 10000 | 6237 | ID=MS.gene060119.t1;Parent=MS.gene060119 |
| 43206 | exon | 9897 | 10000 | 9897 | ID=MS.gene060119.t1.exon1;Parent=MS.gene060119.t1 |
| 43206 | CDS | 9897 | 10000 | 9897 | ID=cds.MS.gene060119.t1;Parent=MS.gene060119.t1 |
| 43206 | exon | 9347 | 9626 | 9347 | ID=MS.gene060119.t1.exon2;Parent=MS.gene060119.t1 |
| 43206 | CDS | 9347 | 9626 | 9347 | ID=cds.MS.gene060119.t1;Parent=MS.gene060119.t1 |
| 43206 | exon | 8368 | 8740 | 8368 | ID=MS.gene060119.t1.exon3;Parent=MS.gene060119.t1 |
| 43206 | CDS | 8368 | 8740 | 8368 | ID=cds.MS.gene060119.t1;Parent=MS.gene060119.t1 |
| 43206 | exon | 8046 | 8264 | 8046 | ID=MS.gene060119.t1.exon4;Parent=MS.gene060119.t1 |
| 43206 | CDS | 8046 | 8264 | 8046 | ID=cds.MS.gene060119.t1;Parent=MS.gene060119.t1 |
| 43206 | exon | 7636 | 7774 | 7636 | ID=MS.gene060119.t1.exon5;Parent=MS.gene060119.t1 |
| 43206 | CDS | 7636 | 7774 | 7636 | ID=cds.MS.gene060119.t1;Parent=MS.gene060119.t1 |
| 43206 | exon | 6643 | 6891 | 6643 | ID=MS.gene060119.t1.exon6;Parent=MS.gene060119.t1 |
| 43206 | CDS | 6643 | 6891 | 6643 | ID=cds.MS.gene060119.t1;Parent=MS.gene060119.t1 |
| 43206 | exon | 6237 | 6530 | 6237 | ID=MS.gene060119.t1.exon7;Parent=MS.gene060119.t1 |
| 43206 | CDS | 6237 | 6530 | 6237 | ID=cds.MS.gene060119.t1;Parent=MS.gene060119.t1 |
| Gene Sequence |
| Protein sequence |
