AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene54266


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene54266.t1 MTR_4g048460 67.708 192 62 0 5 196 370 561 4.14e-92 280
MS.gene54266.t1 MTR_6g039440 64.286 196 70 0 1 196 358 553 9.34e-90 273
MS.gene54266.t1 MTR_3g464190 62.755 196 73 0 1 196 362 557 7.42e-88 268
MS.gene54266.t1 MTR_6g008560 60.714 196 77 0 1 196 206 401 8.97e-88 263
MS.gene54266.t1 MTR_7g057340 66.279 172 58 0 25 196 1 172 9.60e-88 255
MS.gene54266.t1 MTR_6g008560 60.714 196 77 0 1 196 362 557 1.23e-85 263
MS.gene54266.t1 MTR_5g073260 62.371 194 73 0 1 194 357 550 1.32e-85 263
MS.gene54266.t1 MTR_5g062230 62.245 196 74 0 1 196 358 553 1.72e-84 259
MS.gene54266.t1 MTR_5g094620 61.026 195 76 0 2 196 343 537 1.39e-83 257
MS.gene54266.t1 MTR_5g073200 59.794 194 78 0 1 194 354 547 2.97e-83 256
MS.gene54266.t1 MTR_7g057390 63.953 172 59 1 25 196 1 169 5.48e-81 238
MS.gene54266.t1 MTR_4g081460 53.368 193 90 0 1 193 367 559 2.52e-69 221
MS.gene54266.t1 MTR_3g015080 47.674 172 52 2 25 196 1 134 1.17e-49 157
MS.gene54266.t1 MTR_2g081980 41.530 183 104 3 15 196 377 557 8.45e-44 153
MS.gene54266.t1 MTR_8g007515 38.144 194 117 3 4 196 365 556 1.61e-42 150
MS.gene54266.t1 MTR_2g082010 37.629 194 117 4 5 196 377 568 1.32e-41 147
MS.gene54266.t1 MTR_2g082050 38.547 179 107 3 17 194 281 457 5.13e-41 144
MS.gene54266.t1 MTR_4g048460 66.316 95 32 0 5 99 370 464 1.73e-37 135
MS.gene54266.t1 MTR_2g082060 38.251 183 99 4 15 196 384 553 5.14e-35 129
MS.gene54266.t1 MTR_4g019550 36.774 155 93 3 43 196 408 558 1.48e-25 103
MS.gene54266.t1 MTR_4g092020 29.412 187 127 2 11 194 385 569 1.29e-23 97.8
MS.gene54266.t1 MTR_4g045810 26.630 184 134 1 12 194 396 579 9.57e-20 86.7
MS.gene54266.t1 MTR_7g010710 28.495 186 133 0 8 193 367 552 1.91e-19 85.9
MS.gene54266.t1 MTR_3g063120 27.461 193 133 5 2 190 299 488 3.20e-19 85.1
MS.gene54266.t1 MTR_6g065040 28.161 174 116 4 2 169 221 391 1.97e-18 82.4
MS.gene54266.t1 MTR_4g092010 25.543 184 129 3 10 188 376 556 2.28e-18 82.8
MS.gene54266.t1 MTR_3g465090 27.684 177 123 4 2 174 323 498 5.94e-18 81.3
MS.gene54266.t1 MTR_2g089130 25.767 163 119 2 15 176 385 546 1.52e-17 80.1
MS.gene54266.t1 MTR_3g052120 29.714 175 117 4 20 190 340 512 1.82e-17 80.1
MS.gene54266.t1 MTR_3g063140 28.161 174 116 4 2 169 323 493 2.51e-17 79.7
MS.gene54266.t1 MTR_6g064980 26.705 176 121 3 10 179 330 503 3.54e-17 79.3
MS.gene54266.t1 MTR_3g063170 28.161 174 116 4 2 169 323 493 3.75e-17 79.0
MS.gene54266.t1 MTR_2g065450 27.179 195 138 3 1 194 397 588 2.35e-16 76.6
MS.gene54266.t1 MTR_2g064425 26.154 195 140 3 1 194 393 584 2.42e-14 70.9
MS.gene54266.t1 MTR_2g064425 26.154 195 140 3 1 194 378 569 2.59e-14 70.9
MS.gene54266.t1 MTR_2g010960 25.641 195 129 6 6 187 327 518 9.82e-14 69.3
MS.gene54266.t1 MTR_8g057020 24.870 193 143 2 3 194 396 587 1.06e-13 68.9
MS.gene54266.t1 MTR_2g089120 24.375 160 118 3 19 176 389 547 1.24e-13 68.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene54266.t1 AT5G23960 39.286 196 118 1 1 196 353 547 1.00e-45 158
MS.gene54266.t1 AT5G23960 39.286 196 118 1 1 196 351 545 1.00e-45 158
MS.gene54266.t1 AT5G48110 30.612 196 133 3 1 196 147 339 3.32e-35 126
MS.gene54266.t1 AT1G70080 32.487 197 132 1 1 196 415 611 6.08e-34 127
MS.gene54266.t1 AT4G13300 30.964 197 135 1 1 196 358 554 2.08e-33 125
MS.gene54266.t1 AT4G13280 30.457 197 136 1 1 196 358 554 3.51e-33 124
MS.gene54266.t1 AT3G14520 30.457 197 136 1 1 196 408 604 3.52e-33 125
MS.gene54266.t1 AT3G32030 29.949 197 137 1 1 196 408 604 1.09e-32 123
MS.gene54266.t1 AT5G44630 30.412 194 135 0 1 194 362 555 1.62e-32 122
MS.gene54266.t1 AT4G20200 31.443 194 131 2 4 196 412 604 2.46e-32 122
MS.gene54266.t1 AT4G20210 29.082 196 139 0 1 196 405 600 6.31e-32 121
MS.gene54266.t1 AT3G14540 29.949 197 137 1 1 196 405 601 3.11e-31 119
MS.gene54266.t1 AT3G29410 29.897 194 136 0 1 194 303 496 3.40e-31 118
MS.gene54266.t1 AT3G29410 29.592 196 138 0 1 196 408 603 6.47e-31 118
MS.gene54266.t1 AT1G33750 29.082 196 139 0 1 196 408 603 4.62e-30 116
MS.gene54266.t1 AT3G14490 32.487 197 131 2 1 196 406 601 9.67e-30 115
MS.gene54266.t1 AT1G31950 29.442 197 138 1 1 196 410 606 2.05e-29 114
MS.gene54266.t1 AT1G31950 29.442 197 138 1 1 196 411 607 2.29e-29 114
MS.gene54266.t1 AT1G61680 33.526 173 114 1 15 186 390 562 1.48e-28 111
MS.gene54266.t1 AT1G61680 33.526 173 114 1 15 186 397 569 1.53e-28 111
MS.gene54266.t1 AT3G29190 27.000 200 138 2 1 196 406 601 5.98e-27 107
MS.gene54266.t1 AT4G20230 27.979 193 138 1 1 192 421 613 1.07e-25 103
MS.gene54266.t1 AT4G20230 27.979 193 138 1 1 192 409 601 1.12e-25 103
MS.gene54266.t1 AT1G48800 26.064 188 139 0 5 192 415 602 1.29e-25 103
MS.gene54266.t1 AT1G66020 28.571 196 140 0 1 196 403 598 5.54e-25 101
MS.gene54266.t1 AT3G29110 27.835 194 140 0 1 194 402 595 4.34e-24 99.4
MS.gene54266.t1 AT2G23230 28.421 190 135 1 3 191 406 595 6.56e-24 98.6
MS.gene54266.t1 AT4G13280 27.919 197 111 3 1 196 358 524 3.75e-22 93.6
MS.gene54266.t1 AT4G15870 27.684 177 125 2 21 196 424 598 8.70e-22 92.4
MS.gene54266.t1 AT2G23230 27.895 190 131 2 3 191 406 590 1.47e-21 92.0
MS.gene54266.t1 AT1G48820 24.725 182 136 1 9 189 376 557 2.35e-19 85.5
MS.gene54266.t1 AT3G25810 26.842 190 133 3 13 196 408 597 9.92e-18 80.9
MS.gene54266.t1 AT4G16730 25.668 187 135 3 12 194 351 537 1.62e-17 80.1
MS.gene54266.t1 AT4G16730 25.668 187 135 3 12 194 305 491 1.91e-17 80.1
MS.gene54266.t1 AT2G24210 25.263 190 137 4 12 196 401 590 3.61e-15 73.6
MS.gene54266.t1 AT3G14540 30.097 103 72 0 1 103 405 507 1.63e-14 71.6
MS.gene54266.t1 AT3G25830 26.562 192 133 5 12 196 404 594 7.98e-14 69.7
MS.gene54266.t1 AT3G25820 26.562 192 133 5 12 196 404 594 7.98e-14 69.7
MS.gene54266.t1 AT1G31950 28.571 112 79 1 1 111 411 522 3.27e-12 64.7

Find 0 sgRNAs with CRISPR-Local

Find 59 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATATAAAATAAACGTTAAT+AGG - 43203:28066-28085 MS.gene54266:intergenic 10.0%
!! TTAACAACATTTAATTACAT+AGG + 43203:28024-28043 MS.gene54266:intron 15.0%
!!! AAACATTTTTACATCATTTT+AGG + 43203:27560-27579 MS.gene54266:intron 15.0%
!!! ATTTCATTTTAAACTTTGTA+TGG + 43203:27459-27478 MS.gene54266:intron 15.0%
!! AAGAAAAATGTATCATCATT+AGG + 43203:27775-27794 MS.gene54266:intron 20.0%
!! TGTAAAAAACTTATTATCCA+CGG + 43203:27699-27718 MS.gene54266:intron 20.0%
!! TTGCAGAATTAATATTACAA+AGG - 43203:27941-27960 MS.gene54266:intergenic 20.0%
!!! TATCTTGACATTTTAATTAG+TGG + 43203:27967-27986 MS.gene54266:intron 20.0%
! AAACTTTGTATGGTTATCAA+AGG + 43203:27469-27488 MS.gene54266:intron 25.0%
! AACTTTGTATGGTTATCAAA+GGG + 43203:27470-27489 MS.gene54266:intron 25.0%
! ATGAAATCTTTGTTCAATTG+TGG - 43203:27446-27465 MS.gene54266:intergenic 25.0%
! TGCAAAAAACTTATTATCCA+TGG + 43203:27855-27874 MS.gene54266:intron 25.0%
!! TCATGAAGATACATTTTTCT+TGG - 43203:27621-27640 MS.gene54266:intergenic 25.0%
!!! AACTCTTACTTCTTTTAAGA+AGG - 43203:27346-27365 MS.gene54266:intergenic 25.0%
!!! ACTCTTACTTCTTTTAAGAA+GGG - 43203:27345-27364 MS.gene54266:intergenic 25.0%
AAAAGAAAATTGACAACGCT+TGG + 43203:28553-28572 MS.gene54266:CDS 30.0%
CACATATCAACAATATCAAG+TGG + 43203:28182-28201 MS.gene54266:CDS 30.0%
GAGGGAATATGATTTGAATA+GGG + 43203:28509-28528 MS.gene54266:CDS 30.0%
GTACTTGGAATGTTATATGA+GGG + 43203:28491-28510 MS.gene54266:CDS 30.0%
TAACTATATACCAACAACAG+AGG + 43203:28151-28170 MS.gene54266:CDS 30.0%
TGAGGGAATATGATTTGAAT+AGG + 43203:28508-28527 MS.gene54266:CDS 30.0%
! AAAGTATCACCATAATGACT+TGG + 43203:27595-27614 MS.gene54266:intron 30.0%
! TTTCTTTTGGCATTCTTGAA+TGG - 43203:28541-28560 MS.gene54266:intergenic 30.0%
!! AAGCGTTGTCAATTTTCTTT+TGG - 43203:28554-28573 MS.gene54266:intergenic 30.0%
!! CTCTTACTTCTTTTAAGAAG+GGG - 43203:27344-27363 MS.gene54266:intergenic 30.0%
!!! TATCCACGGTTTTATTAACT+CGG + 43203:27713-27732 MS.gene54266:intron 30.0%
AAACAGTTTGAGCAGAAAAG+AGG + 43203:28456-28475 MS.gene54266:intron 35.0%
AATCCAAGCTTATATGAGTG+AGG + 43203:28112-28131 MS.gene54266:CDS 35.0%
ACACACGTAAGAATAGGTAA+CGG - 43203:28618-28637 MS.gene54266:intergenic 35.0%
ACGACTTCTTACATTGGAAT+GGG + 43203:28221-28240 MS.gene54266:CDS 35.0%
CGCTTGGAAAGATATAAATC+AGG + 43203:28569-28588 MS.gene54266:CDS 35.0%
CGTACTTGGAATGTTATATG+AGG + 43203:28490-28509 MS.gene54266:CDS 35.0%
GAACTGAGTTCATATAACCA+TGG - 43203:27875-27894 MS.gene54266:intergenic 35.0%
GACAAAAGACATCTTTGACT+GGG + 43203:28253-28272 MS.gene54266:CDS 35.0%
TACGACTTCTTACATTGGAA+TGG + 43203:28220-28239 MS.gene54266:CDS 35.0%
TGGTTATCAAAGGGAAGTTT+AGG + 43203:27479-27498 MS.gene54266:intron 35.0%
TTGAGAACACACGTAAGAAT+AGG - 43203:28624-28643 MS.gene54266:intergenic 35.0%
! GCAGCAGCATTAACAATTTT+TGG - 43203:28290-28309 MS.gene54266:intergenic 35.0%
! TTTTCTTGGCCAAGTCATTA+TGG - 43203:27607-27626 MS.gene54266:intergenic 35.0%
!! TTCTTTTAAGAAGGGGTCAA+GGG - 43203:27337-27356 MS.gene54266:intergenic 35.0%
AGGACATGTTTCTTCGTACT+TGG + 43203:28476-28495 MS.gene54266:CDS 40.0%
ATAGTTAGCATTCAGCCATC+TGG - 43203:28138-28157 MS.gene54266:intergenic 40.0%
CGACAAAAGACATCTTTGAC+TGG + 43203:28252-28271 MS.gene54266:CDS 40.0%
GAACCGAGTTAATAAAACCG+TGG - 43203:27719-27738 MS.gene54266:intergenic 40.0%
GATAACTACACACACTCTGA+CGG + 43203:28681-28700 MS.gene54266:CDS 40.0%
TGCTATACATTGCAGGCTTA+GGG + 43203:28307-28326 MS.gene54266:CDS 40.0%
TTGGCTACGACTTCTTACAT+TGG + 43203:28215-28234 MS.gene54266:CDS 40.0%
!! ATAGGTAACGGAACTTCACT+TGG - 43203:28606-28625 MS.gene54266:intergenic 40.0%
!! CAATCTCTCGCGTTTTATTG+AGG + 43203:28641-28660 MS.gene54266:CDS 40.0%
!! CTTCTTTTAAGAAGGGGTCA+AGG - 43203:27338-27357 MS.gene54266:intergenic 40.0%
AAGAAGTCGTAGCCAACACT+GGG - 43203:28211-28230 MS.gene54266:intergenic 45.0%
ATCAAGTGGTTACCCAGTGT+TGG + 43203:28196-28215 MS.gene54266:CDS 45.0%
ATGCTGCTGCTATACATTGC+AGG + 43203:28300-28319 MS.gene54266:CDS 45.0%
CTGCTATACATTGCAGGCTT+AGG + 43203:28306-28325 MS.gene54266:CDS 45.0%
CTTATATGAGTGAGGCCAGA+TGG + 43203:28120-28139 MS.gene54266:CDS 45.0%
GGATGAAATTGTGTCAAGCG+AGG + 43203:28328-28347 MS.gene54266:CDS 45.0%
TAAGAAGTCGTAGCCAACAC+TGG - 43203:28212-28231 MS.gene54266:intergenic 45.0%
TGCATGTACTCCTCTGTTGT+TGG - 43203:28164-28183 MS.gene54266:intergenic 45.0%
TGGCCTCACTCATATAAGCT+TGG - 43203:28118-28137 MS.gene54266:intergenic 45.0%


Chromosome Type Strat End Strand Name
43203 gene 27309 28755 27309 ID=MS.gene54266
43203 mRNA 27309 28755 27309 ID=MS.gene54266.t1;Parent=MS.gene54266
43203 exon 27309 27356 27309 ID=MS.gene54266.t1.exon1;Parent=MS.gene54266.t1
43203 CDS 27309 27356 27309 ID=cds.MS.gene54266.t1;Parent=MS.gene54266.t1
43203 exon 28101 28349 28101 ID=MS.gene54266.t1.exon2;Parent=MS.gene54266.t1
43203 CDS 28101 28349 28101 ID=cds.MS.gene54266.t1;Parent=MS.gene54266.t1
43203 exon 28462 28755 28462 ID=MS.gene54266.t1.exon3;Parent=MS.gene54266.t1
43203 CDS 28462 28755 28462 ID=cds.MS.gene54266.t1;Parent=MS.gene54266.t1
Gene Sequence

>MS.gene54266

ATGAAGAAAGAAGGAAGAGAATACACCCTTGACCCCTTCTTAAAAGAAGTAAGAGTTTTGCTTTATTGTTAGTATTATTAGTAATAATAAAGCATTAATTAAAATTTGTTTCTTTTAGTGATTTATAATTTATTCCACAATTGAACAAAGATTTCATTTTAAACTTTGTATGGTTATCAAAGGGAAGTTTAGGATTTTATTTGAACACACTATCAATATAAATACATATATCATATCAAATCTCAACTTTAAAACATTTTTACATCATTTTAGGAATTAACATGATAAAGTATCACCATAATGACTTGGCCAAGAAAAATGTATCTTCATGAAGTTATTTGATTGAATGTAATGTTAAAAAGTTTTCTACTATCAAATAATAAAAATTAATGTAAAAAACTTATTATCCACGGTTTTATTAACTCGGTTCATTAACATGATAAAGTATCATCATGATGACTTGATAAAGAAAAATGTATCATCATTAGGTTTATTTGAATGAATGCAATGTTAAAAAAATTTCTACTACAAAAGAATAAAAATTAATGCAAAAAACTTATTATCCATGGTTATATGAACTCAGTTCGTAGTAATAATGATGATAAATTTTGTTTTGTCGTAAAAGAGCTCCTTTGTAATATTAATTCTGCAAAAGATATATCTTGACATTTTAATTAGTGGCTTGATGAAAACTAAAAAAAATTGCTAATAAAATTTAACAACATTTAATTACATAGGTTTTTTTTGTACACAGCCTATTAACGTTTATTTTATATTGTATACTAATGACAGTTCAAAAATATAATCCAAGCTTATATGAGTGAGGCCAGATGGCTGAATGCTAACTATATACCAACAACAGAGGAGTACATGCACATATCAACAATATCAAGTGGTTACCCAGTGTTGGCTACGACTTCTTACATTGGAATGGGAAACATAGCGACAAAAGACATCTTTGACTGGGTAACTAACAATCCAAAAATTGTTAATGCTGCTGCTATACATTGCAGGCTTAGGGATGAAATTGTGTCAAGCGAGGTATTTTTTTAAAAGCGTTTTAAAAATTAATATAATAAGTTGACATAATGAAGAAATGTGACTCTTGATATATCTAATTTATCTAATATGATTTATATAATTTGATAAACAGTTTGAGCAGAAAAGAGGACATGTTTCTTCGTACTTGGAATGTTATATGAGGGAATATGATTTGAATAGGGAAGCTGCCATTCAAGAATGCCAAAAGAAAATTGACAACGCTTGGAAAGATATAAATCAGGAATGTCTTAAGCCAAGTGAAGTTCCGTTACCTATTCTTACGTGTGTTCTCAATCTCTCGCGTTTTATTGAGGTTTTTTACAAAGATACAGATAACTACACACACTCTGACGGACTAATGAAGACATATATTAATGATTTGCTTGTCAATCCCGTAGAAATTTGA

Protein sequence

>MS.gene54266.t1

MKKEGREYTLDPFLKEFKNIIQAYMSEARWLNANYIPTTEEYMHISTISSGYPVLATTSYIGMGNIATKDIFDWVTNNPKIVNAAAIHCRLRDEIVSSEFEQKRGHVSSYLECYMREYDLNREAAIQECQKKIDNAWKDINQECLKPSEVPLPILTCVLNLSRFIEVFYKDTDNYTHSDGLMKTYINDLLVNPVEI