Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene54266.t1 | XP_004517081.1 | 71.6 | 194 | 55 | 0 | 3 | 196 | 363 | 556 | 3.10E-79 | 304.7 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene54266.t1 | B9SCB6 | 50.3 | 193 | 96 | 0 | 1 | 193 | 357 | 549 | 4.6e-55 | 215.7 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene54266.t1 | A0A1S2Z8R2 | 71.6 | 194 | 55 | 0 | 3 | 196 | 363 | 556 | 2.3e-79 | 304.7 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene060118 | MS.gene54266 | 0.81461 | 1.41E-51 | -1.69E-46 |
MS.gene060119 | MS.gene54266 | 0.890057 | 1.39E-73 | -1.69E-46 |
MS.gene060120 | MS.gene54266 | 0.893301 | 7.14E-75 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene54266.t1 | MTR_4g048460 | 67.708 | 192 | 62 | 0 | 5 | 196 | 370 | 561 | 4.14e-92 | 280 |
MS.gene54266.t1 | MTR_6g039440 | 64.286 | 196 | 70 | 0 | 1 | 196 | 358 | 553 | 9.34e-90 | 273 |
MS.gene54266.t1 | MTR_3g464190 | 62.755 | 196 | 73 | 0 | 1 | 196 | 362 | 557 | 7.42e-88 | 268 |
MS.gene54266.t1 | MTR_6g008560 | 60.714 | 196 | 77 | 0 | 1 | 196 | 206 | 401 | 8.97e-88 | 263 |
MS.gene54266.t1 | MTR_7g057340 | 66.279 | 172 | 58 | 0 | 25 | 196 | 1 | 172 | 9.60e-88 | 255 |
MS.gene54266.t1 | MTR_6g008560 | 60.714 | 196 | 77 | 0 | 1 | 196 | 362 | 557 | 1.23e-85 | 263 |
MS.gene54266.t1 | MTR_5g073260 | 62.371 | 194 | 73 | 0 | 1 | 194 | 357 | 550 | 1.32e-85 | 263 |
MS.gene54266.t1 | MTR_5g062230 | 62.245 | 196 | 74 | 0 | 1 | 196 | 358 | 553 | 1.72e-84 | 259 |
MS.gene54266.t1 | MTR_5g094620 | 61.026 | 195 | 76 | 0 | 2 | 196 | 343 | 537 | 1.39e-83 | 257 |
MS.gene54266.t1 | MTR_5g073200 | 59.794 | 194 | 78 | 0 | 1 | 194 | 354 | 547 | 2.97e-83 | 256 |
MS.gene54266.t1 | MTR_7g057390 | 63.953 | 172 | 59 | 1 | 25 | 196 | 1 | 169 | 5.48e-81 | 238 |
MS.gene54266.t1 | MTR_4g081460 | 53.368 | 193 | 90 | 0 | 1 | 193 | 367 | 559 | 2.52e-69 | 221 |
MS.gene54266.t1 | MTR_3g015080 | 47.674 | 172 | 52 | 2 | 25 | 196 | 1 | 134 | 1.17e-49 | 157 |
MS.gene54266.t1 | MTR_2g081980 | 41.530 | 183 | 104 | 3 | 15 | 196 | 377 | 557 | 8.45e-44 | 153 |
MS.gene54266.t1 | MTR_8g007515 | 38.144 | 194 | 117 | 3 | 4 | 196 | 365 | 556 | 1.61e-42 | 150 |
MS.gene54266.t1 | MTR_2g082010 | 37.629 | 194 | 117 | 4 | 5 | 196 | 377 | 568 | 1.32e-41 | 147 |
MS.gene54266.t1 | MTR_2g082050 | 38.547 | 179 | 107 | 3 | 17 | 194 | 281 | 457 | 5.13e-41 | 144 |
MS.gene54266.t1 | MTR_4g048460 | 66.316 | 95 | 32 | 0 | 5 | 99 | 370 | 464 | 1.73e-37 | 135 |
MS.gene54266.t1 | MTR_2g082060 | 38.251 | 183 | 99 | 4 | 15 | 196 | 384 | 553 | 5.14e-35 | 129 |
MS.gene54266.t1 | MTR_4g019550 | 36.774 | 155 | 93 | 3 | 43 | 196 | 408 | 558 | 1.48e-25 | 103 |
MS.gene54266.t1 | MTR_4g092020 | 29.412 | 187 | 127 | 2 | 11 | 194 | 385 | 569 | 1.29e-23 | 97.8 |
MS.gene54266.t1 | MTR_4g045810 | 26.630 | 184 | 134 | 1 | 12 | 194 | 396 | 579 | 9.57e-20 | 86.7 |
MS.gene54266.t1 | MTR_7g010710 | 28.495 | 186 | 133 | 0 | 8 | 193 | 367 | 552 | 1.91e-19 | 85.9 |
MS.gene54266.t1 | MTR_3g063120 | 27.461 | 193 | 133 | 5 | 2 | 190 | 299 | 488 | 3.20e-19 | 85.1 |
MS.gene54266.t1 | MTR_6g065040 | 28.161 | 174 | 116 | 4 | 2 | 169 | 221 | 391 | 1.97e-18 | 82.4 |
MS.gene54266.t1 | MTR_4g092010 | 25.543 | 184 | 129 | 3 | 10 | 188 | 376 | 556 | 2.28e-18 | 82.8 |
MS.gene54266.t1 | MTR_3g465090 | 27.684 | 177 | 123 | 4 | 2 | 174 | 323 | 498 | 5.94e-18 | 81.3 |
MS.gene54266.t1 | MTR_2g089130 | 25.767 | 163 | 119 | 2 | 15 | 176 | 385 | 546 | 1.52e-17 | 80.1 |
MS.gene54266.t1 | MTR_3g052120 | 29.714 | 175 | 117 | 4 | 20 | 190 | 340 | 512 | 1.82e-17 | 80.1 |
MS.gene54266.t1 | MTR_3g063140 | 28.161 | 174 | 116 | 4 | 2 | 169 | 323 | 493 | 2.51e-17 | 79.7 |
MS.gene54266.t1 | MTR_6g064980 | 26.705 | 176 | 121 | 3 | 10 | 179 | 330 | 503 | 3.54e-17 | 79.3 |
MS.gene54266.t1 | MTR_3g063170 | 28.161 | 174 | 116 | 4 | 2 | 169 | 323 | 493 | 3.75e-17 | 79.0 |
MS.gene54266.t1 | MTR_2g065450 | 27.179 | 195 | 138 | 3 | 1 | 194 | 397 | 588 | 2.35e-16 | 76.6 |
MS.gene54266.t1 | MTR_2g064425 | 26.154 | 195 | 140 | 3 | 1 | 194 | 393 | 584 | 2.42e-14 | 70.9 |
MS.gene54266.t1 | MTR_2g064425 | 26.154 | 195 | 140 | 3 | 1 | 194 | 378 | 569 | 2.59e-14 | 70.9 |
MS.gene54266.t1 | MTR_2g010960 | 25.641 | 195 | 129 | 6 | 6 | 187 | 327 | 518 | 9.82e-14 | 69.3 |
MS.gene54266.t1 | MTR_8g057020 | 24.870 | 193 | 143 | 2 | 3 | 194 | 396 | 587 | 1.06e-13 | 68.9 |
MS.gene54266.t1 | MTR_2g089120 | 24.375 | 160 | 118 | 3 | 19 | 176 | 389 | 547 | 1.24e-13 | 68.9 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene54266.t1 | AT5G23960 | 39.286 | 196 | 118 | 1 | 1 | 196 | 353 | 547 | 1.00e-45 | 158 |
MS.gene54266.t1 | AT5G23960 | 39.286 | 196 | 118 | 1 | 1 | 196 | 351 | 545 | 1.00e-45 | 158 |
MS.gene54266.t1 | AT5G48110 | 30.612 | 196 | 133 | 3 | 1 | 196 | 147 | 339 | 3.32e-35 | 126 |
MS.gene54266.t1 | AT1G70080 | 32.487 | 197 | 132 | 1 | 1 | 196 | 415 | 611 | 6.08e-34 | 127 |
MS.gene54266.t1 | AT4G13300 | 30.964 | 197 | 135 | 1 | 1 | 196 | 358 | 554 | 2.08e-33 | 125 |
MS.gene54266.t1 | AT4G13280 | 30.457 | 197 | 136 | 1 | 1 | 196 | 358 | 554 | 3.51e-33 | 124 |
MS.gene54266.t1 | AT3G14520 | 30.457 | 197 | 136 | 1 | 1 | 196 | 408 | 604 | 3.52e-33 | 125 |
MS.gene54266.t1 | AT3G32030 | 29.949 | 197 | 137 | 1 | 1 | 196 | 408 | 604 | 1.09e-32 | 123 |
MS.gene54266.t1 | AT5G44630 | 30.412 | 194 | 135 | 0 | 1 | 194 | 362 | 555 | 1.62e-32 | 122 |
MS.gene54266.t1 | AT4G20200 | 31.443 | 194 | 131 | 2 | 4 | 196 | 412 | 604 | 2.46e-32 | 122 |
MS.gene54266.t1 | AT4G20210 | 29.082 | 196 | 139 | 0 | 1 | 196 | 405 | 600 | 6.31e-32 | 121 |
MS.gene54266.t1 | AT3G14540 | 29.949 | 197 | 137 | 1 | 1 | 196 | 405 | 601 | 3.11e-31 | 119 |
MS.gene54266.t1 | AT3G29410 | 29.897 | 194 | 136 | 0 | 1 | 194 | 303 | 496 | 3.40e-31 | 118 |
MS.gene54266.t1 | AT3G29410 | 29.592 | 196 | 138 | 0 | 1 | 196 | 408 | 603 | 6.47e-31 | 118 |
MS.gene54266.t1 | AT1G33750 | 29.082 | 196 | 139 | 0 | 1 | 196 | 408 | 603 | 4.62e-30 | 116 |
MS.gene54266.t1 | AT3G14490 | 32.487 | 197 | 131 | 2 | 1 | 196 | 406 | 601 | 9.67e-30 | 115 |
MS.gene54266.t1 | AT1G31950 | 29.442 | 197 | 138 | 1 | 1 | 196 | 410 | 606 | 2.05e-29 | 114 |
MS.gene54266.t1 | AT1G31950 | 29.442 | 197 | 138 | 1 | 1 | 196 | 411 | 607 | 2.29e-29 | 114 |
MS.gene54266.t1 | AT1G61680 | 33.526 | 173 | 114 | 1 | 15 | 186 | 390 | 562 | 1.48e-28 | 111 |
MS.gene54266.t1 | AT1G61680 | 33.526 | 173 | 114 | 1 | 15 | 186 | 397 | 569 | 1.53e-28 | 111 |
MS.gene54266.t1 | AT3G29190 | 27.000 | 200 | 138 | 2 | 1 | 196 | 406 | 601 | 5.98e-27 | 107 |
MS.gene54266.t1 | AT4G20230 | 27.979 | 193 | 138 | 1 | 1 | 192 | 421 | 613 | 1.07e-25 | 103 |
MS.gene54266.t1 | AT4G20230 | 27.979 | 193 | 138 | 1 | 1 | 192 | 409 | 601 | 1.12e-25 | 103 |
MS.gene54266.t1 | AT1G48800 | 26.064 | 188 | 139 | 0 | 5 | 192 | 415 | 602 | 1.29e-25 | 103 |
MS.gene54266.t1 | AT1G66020 | 28.571 | 196 | 140 | 0 | 1 | 196 | 403 | 598 | 5.54e-25 | 101 |
MS.gene54266.t1 | AT3G29110 | 27.835 | 194 | 140 | 0 | 1 | 194 | 402 | 595 | 4.34e-24 | 99.4 |
MS.gene54266.t1 | AT2G23230 | 28.421 | 190 | 135 | 1 | 3 | 191 | 406 | 595 | 6.56e-24 | 98.6 |
MS.gene54266.t1 | AT4G13280 | 27.919 | 197 | 111 | 3 | 1 | 196 | 358 | 524 | 3.75e-22 | 93.6 |
MS.gene54266.t1 | AT4G15870 | 27.684 | 177 | 125 | 2 | 21 | 196 | 424 | 598 | 8.70e-22 | 92.4 |
MS.gene54266.t1 | AT2G23230 | 27.895 | 190 | 131 | 2 | 3 | 191 | 406 | 590 | 1.47e-21 | 92.0 |
MS.gene54266.t1 | AT1G48820 | 24.725 | 182 | 136 | 1 | 9 | 189 | 376 | 557 | 2.35e-19 | 85.5 |
MS.gene54266.t1 | AT3G25810 | 26.842 | 190 | 133 | 3 | 13 | 196 | 408 | 597 | 9.92e-18 | 80.9 |
MS.gene54266.t1 | AT4G16730 | 25.668 | 187 | 135 | 3 | 12 | 194 | 351 | 537 | 1.62e-17 | 80.1 |
MS.gene54266.t1 | AT4G16730 | 25.668 | 187 | 135 | 3 | 12 | 194 | 305 | 491 | 1.91e-17 | 80.1 |
MS.gene54266.t1 | AT2G24210 | 25.263 | 190 | 137 | 4 | 12 | 196 | 401 | 590 | 3.61e-15 | 73.6 |
MS.gene54266.t1 | AT3G14540 | 30.097 | 103 | 72 | 0 | 1 | 103 | 405 | 507 | 1.63e-14 | 71.6 |
MS.gene54266.t1 | AT3G25830 | 26.562 | 192 | 133 | 5 | 12 | 196 | 404 | 594 | 7.98e-14 | 69.7 |
MS.gene54266.t1 | AT3G25820 | 26.562 | 192 | 133 | 5 | 12 | 196 | 404 | 594 | 7.98e-14 | 69.7 |
MS.gene54266.t1 | AT1G31950 | 28.571 | 112 | 79 | 1 | 1 | 111 | 411 | 522 | 3.27e-12 | 64.7 |
Find 0 sgRNAs with CRISPR-Local
Find 59 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AATATAAAATAAACGTTAAT+AGG | - | 43203:28066-28085 | MS.gene54266:intergenic | 10.0% |
!! | TTAACAACATTTAATTACAT+AGG | + | 43203:28024-28043 | MS.gene54266:intron | 15.0% |
!!! | AAACATTTTTACATCATTTT+AGG | + | 43203:27560-27579 | MS.gene54266:intron | 15.0% |
!!! | ATTTCATTTTAAACTTTGTA+TGG | + | 43203:27459-27478 | MS.gene54266:intron | 15.0% |
!! | AAGAAAAATGTATCATCATT+AGG | + | 43203:27775-27794 | MS.gene54266:intron | 20.0% |
!! | TGTAAAAAACTTATTATCCA+CGG | + | 43203:27699-27718 | MS.gene54266:intron | 20.0% |
!! | TTGCAGAATTAATATTACAA+AGG | - | 43203:27941-27960 | MS.gene54266:intergenic | 20.0% |
!!! | TATCTTGACATTTTAATTAG+TGG | + | 43203:27967-27986 | MS.gene54266:intron | 20.0% |
! | AAACTTTGTATGGTTATCAA+AGG | + | 43203:27469-27488 | MS.gene54266:intron | 25.0% |
! | AACTTTGTATGGTTATCAAA+GGG | + | 43203:27470-27489 | MS.gene54266:intron | 25.0% |
! | ATGAAATCTTTGTTCAATTG+TGG | - | 43203:27446-27465 | MS.gene54266:intergenic | 25.0% |
! | TGCAAAAAACTTATTATCCA+TGG | + | 43203:27855-27874 | MS.gene54266:intron | 25.0% |
!! | TCATGAAGATACATTTTTCT+TGG | - | 43203:27621-27640 | MS.gene54266:intergenic | 25.0% |
!!! | AACTCTTACTTCTTTTAAGA+AGG | - | 43203:27346-27365 | MS.gene54266:intergenic | 25.0% |
!!! | ACTCTTACTTCTTTTAAGAA+GGG | - | 43203:27345-27364 | MS.gene54266:intergenic | 25.0% |
AAAAGAAAATTGACAACGCT+TGG | + | 43203:28553-28572 | MS.gene54266:CDS | 30.0% | |
CACATATCAACAATATCAAG+TGG | + | 43203:28182-28201 | MS.gene54266:CDS | 30.0% | |
GAGGGAATATGATTTGAATA+GGG | + | 43203:28509-28528 | MS.gene54266:CDS | 30.0% | |
GTACTTGGAATGTTATATGA+GGG | + | 43203:28491-28510 | MS.gene54266:CDS | 30.0% | |
TAACTATATACCAACAACAG+AGG | + | 43203:28151-28170 | MS.gene54266:CDS | 30.0% | |
TGAGGGAATATGATTTGAAT+AGG | + | 43203:28508-28527 | MS.gene54266:CDS | 30.0% | |
! | AAAGTATCACCATAATGACT+TGG | + | 43203:27595-27614 | MS.gene54266:intron | 30.0% |
! | TTTCTTTTGGCATTCTTGAA+TGG | - | 43203:28541-28560 | MS.gene54266:intergenic | 30.0% |
!! | AAGCGTTGTCAATTTTCTTT+TGG | - | 43203:28554-28573 | MS.gene54266:intergenic | 30.0% |
!! | CTCTTACTTCTTTTAAGAAG+GGG | - | 43203:27344-27363 | MS.gene54266:intergenic | 30.0% |
!!! | TATCCACGGTTTTATTAACT+CGG | + | 43203:27713-27732 | MS.gene54266:intron | 30.0% |
AAACAGTTTGAGCAGAAAAG+AGG | + | 43203:28456-28475 | MS.gene54266:intron | 35.0% | |
AATCCAAGCTTATATGAGTG+AGG | + | 43203:28112-28131 | MS.gene54266:CDS | 35.0% | |
ACACACGTAAGAATAGGTAA+CGG | - | 43203:28618-28637 | MS.gene54266:intergenic | 35.0% | |
ACGACTTCTTACATTGGAAT+GGG | + | 43203:28221-28240 | MS.gene54266:CDS | 35.0% | |
CGCTTGGAAAGATATAAATC+AGG | + | 43203:28569-28588 | MS.gene54266:CDS | 35.0% | |
CGTACTTGGAATGTTATATG+AGG | + | 43203:28490-28509 | MS.gene54266:CDS | 35.0% | |
GAACTGAGTTCATATAACCA+TGG | - | 43203:27875-27894 | MS.gene54266:intergenic | 35.0% | |
GACAAAAGACATCTTTGACT+GGG | + | 43203:28253-28272 | MS.gene54266:CDS | 35.0% | |
TACGACTTCTTACATTGGAA+TGG | + | 43203:28220-28239 | MS.gene54266:CDS | 35.0% | |
TGGTTATCAAAGGGAAGTTT+AGG | + | 43203:27479-27498 | MS.gene54266:intron | 35.0% | |
TTGAGAACACACGTAAGAAT+AGG | - | 43203:28624-28643 | MS.gene54266:intergenic | 35.0% | |
! | GCAGCAGCATTAACAATTTT+TGG | - | 43203:28290-28309 | MS.gene54266:intergenic | 35.0% |
! | TTTTCTTGGCCAAGTCATTA+TGG | - | 43203:27607-27626 | MS.gene54266:intergenic | 35.0% |
!! | TTCTTTTAAGAAGGGGTCAA+GGG | - | 43203:27337-27356 | MS.gene54266:intergenic | 35.0% |
AGGACATGTTTCTTCGTACT+TGG | + | 43203:28476-28495 | MS.gene54266:CDS | 40.0% | |
ATAGTTAGCATTCAGCCATC+TGG | - | 43203:28138-28157 | MS.gene54266:intergenic | 40.0% | |
CGACAAAAGACATCTTTGAC+TGG | + | 43203:28252-28271 | MS.gene54266:CDS | 40.0% | |
GAACCGAGTTAATAAAACCG+TGG | - | 43203:27719-27738 | MS.gene54266:intergenic | 40.0% | |
GATAACTACACACACTCTGA+CGG | + | 43203:28681-28700 | MS.gene54266:CDS | 40.0% | |
TGCTATACATTGCAGGCTTA+GGG | + | 43203:28307-28326 | MS.gene54266:CDS | 40.0% | |
TTGGCTACGACTTCTTACAT+TGG | + | 43203:28215-28234 | MS.gene54266:CDS | 40.0% | |
!! | ATAGGTAACGGAACTTCACT+TGG | - | 43203:28606-28625 | MS.gene54266:intergenic | 40.0% |
!! | CAATCTCTCGCGTTTTATTG+AGG | + | 43203:28641-28660 | MS.gene54266:CDS | 40.0% |
!! | CTTCTTTTAAGAAGGGGTCA+AGG | - | 43203:27338-27357 | MS.gene54266:intergenic | 40.0% |
AAGAAGTCGTAGCCAACACT+GGG | - | 43203:28211-28230 | MS.gene54266:intergenic | 45.0% | |
ATCAAGTGGTTACCCAGTGT+TGG | + | 43203:28196-28215 | MS.gene54266:CDS | 45.0% | |
ATGCTGCTGCTATACATTGC+AGG | + | 43203:28300-28319 | MS.gene54266:CDS | 45.0% | |
CTGCTATACATTGCAGGCTT+AGG | + | 43203:28306-28325 | MS.gene54266:CDS | 45.0% | |
CTTATATGAGTGAGGCCAGA+TGG | + | 43203:28120-28139 | MS.gene54266:CDS | 45.0% | |
GGATGAAATTGTGTCAAGCG+AGG | + | 43203:28328-28347 | MS.gene54266:CDS | 45.0% | |
TAAGAAGTCGTAGCCAACAC+TGG | - | 43203:28212-28231 | MS.gene54266:intergenic | 45.0% | |
TGCATGTACTCCTCTGTTGT+TGG | - | 43203:28164-28183 | MS.gene54266:intergenic | 45.0% | |
TGGCCTCACTCATATAAGCT+TGG | - | 43203:28118-28137 | MS.gene54266:intergenic | 45.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
43203 | gene | 27309 | 28755 | 27309 | ID=MS.gene54266 |
43203 | mRNA | 27309 | 28755 | 27309 | ID=MS.gene54266.t1;Parent=MS.gene54266 |
43203 | exon | 27309 | 27356 | 27309 | ID=MS.gene54266.t1.exon1;Parent=MS.gene54266.t1 |
43203 | CDS | 27309 | 27356 | 27309 | ID=cds.MS.gene54266.t1;Parent=MS.gene54266.t1 |
43203 | exon | 28101 | 28349 | 28101 | ID=MS.gene54266.t1.exon2;Parent=MS.gene54266.t1 |
43203 | CDS | 28101 | 28349 | 28101 | ID=cds.MS.gene54266.t1;Parent=MS.gene54266.t1 |
43203 | exon | 28462 | 28755 | 28462 | ID=MS.gene54266.t1.exon3;Parent=MS.gene54266.t1 |
43203 | CDS | 28462 | 28755 | 28462 | ID=cds.MS.gene54266.t1;Parent=MS.gene54266.t1 |
Gene Sequence |
Protein sequence |