Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene54269.t1 | RHN51215.1 | 71.6 | 190 | 51 | 1 | 1 | 190 | 1 | 187 | 5.20E-71 | 277.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene54269.t1 | Q6Q3H3 | 49.4 | 170 | 82 | 1 | 17 | 186 | 22 | 187 | 8.8e-43 | 174.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene54269.t1 | A0A396HF34 | 71.6 | 190 | 51 | 1 | 1 | 190 | 1 | 187 | 3.8e-71 | 277.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene060118 | MS.gene54269 | 0.833013 | 6.81E-56 | -1.69E-46 |
| MS.gene060119 | MS.gene54269 | 0.807082 | 6.01E-50 | -1.69E-46 |
| MS.gene060120 | MS.gene54269 | 0.802947 | 4.41E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene54269.t1 | MTR_6g008560 | 71.579 | 190 | 53 | 1 | 1 | 189 | 1 | 190 | 3.59e-94 | 285 |
| MS.gene54269.t1 | MTR_5g062230 | 70.370 | 189 | 53 | 1 | 1 | 189 | 1 | 186 | 3.32e-91 | 277 |
| MS.gene54269.t1 | MTR_3g464190 | 69.841 | 189 | 56 | 1 | 1 | 188 | 1 | 189 | 2.91e-89 | 272 |
| MS.gene54269.t1 | MTR_6g039440 | 67.196 | 189 | 59 | 1 | 1 | 189 | 1 | 186 | 7.33e-87 | 266 |
| MS.gene54269.t1 | MTR_5g073200 | 69.444 | 180 | 54 | 1 | 12 | 190 | 4 | 183 | 3.39e-84 | 258 |
| MS.gene54269.t1 | MTR_5g073260 | 67.978 | 178 | 55 | 2 | 13 | 188 | 7 | 184 | 7.50e-80 | 248 |
| MS.gene54269.t1 | MTR_4g048460 | 61.326 | 181 | 70 | 0 | 8 | 188 | 13 | 193 | 1.20e-78 | 242 |
| MS.gene54269.t1 | MTR_4g048460 | 61.326 | 181 | 70 | 0 | 8 | 188 | 13 | 193 | 1.30e-77 | 242 |
| MS.gene54269.t1 | MTR_5g094620 | 60.638 | 188 | 55 | 1 | 1 | 188 | 1 | 169 | 1.47e-73 | 231 |
| MS.gene54269.t1 | MTR_4g081460 | 56.831 | 183 | 76 | 2 | 9 | 189 | 14 | 195 | 6.88e-65 | 209 |
| MS.gene54269.t1 | MTR_2g082010 | 45.251 | 179 | 97 | 1 | 13 | 190 | 23 | 201 | 2.46e-50 | 171 |
| MS.gene54269.t1 | MTR_2g081980 | 44.944 | 178 | 96 | 2 | 15 | 190 | 12 | 189 | 2.56e-48 | 165 |
| MS.gene54269.t1 | MTR_2g082060 | 40.933 | 193 | 111 | 2 | 1 | 190 | 3 | 195 | 7.24e-46 | 159 |
| MS.gene54269.t1 | MTR_8g007515 | 45.143 | 175 | 95 | 1 | 13 | 186 | 9 | 183 | 1.33e-44 | 155 |
| MS.gene54269.t1 | MTR_4g019550 | 44.828 | 174 | 94 | 2 | 15 | 186 | 19 | 192 | 8.74e-43 | 150 |
| MS.gene54269.t1 | MTR_4g045810 | 38.547 | 179 | 100 | 3 | 13 | 188 | 41 | 212 | 1.31e-34 | 128 |
| MS.gene54269.t1 | MTR_2g064425 | 45.882 | 170 | 84 | 4 | 17 | 185 | 53 | 215 | 1.54e-32 | 121 |
| MS.gene54269.t1 | MTR_2g064425 | 45.882 | 170 | 84 | 4 | 17 | 185 | 53 | 215 | 5.42e-32 | 121 |
| MS.gene54269.t1 | MTR_8g057020 | 38.636 | 176 | 102 | 3 | 10 | 185 | 48 | 217 | 1.36e-30 | 117 |
| MS.gene54269.t1 | MTR_2g065450 | 35.795 | 176 | 105 | 3 | 10 | 185 | 51 | 218 | 3.58e-26 | 104 |
| MS.gene54269.t1 | MTR_2g089120 | 38.028 | 142 | 74 | 3 | 49 | 187 | 67 | 197 | 2.52e-25 | 102 |
| MS.gene54269.t1 | MTR_2g089130 | 36.054 | 147 | 80 | 3 | 44 | 187 | 62 | 197 | 6.98e-25 | 101 |
| MS.gene54269.t1 | MTR_2g082050 | 37.838 | 148 | 69 | 2 | 43 | 190 | 1 | 125 | 7.87e-25 | 100 |
| MS.gene54269.t1 | MTR_2g064425 | 40.588 | 170 | 78 | 5 | 17 | 185 | 53 | 200 | 1.24e-22 | 94.0 |
| MS.gene54269.t1 | MTR_2g064425 | 40.588 | 170 | 78 | 5 | 17 | 185 | 53 | 200 | 2.17e-22 | 94.0 |
| MS.gene54269.t1 | MTR_4g092010 | 35.766 | 137 | 86 | 2 | 55 | 189 | 61 | 197 | 2.90e-21 | 90.9 |
| MS.gene54269.t1 | MTR_7g010710 | 30.645 | 186 | 123 | 4 | 1 | 185 | 1 | 181 | 1.33e-20 | 89.0 |
| MS.gene54269.t1 | MTR_4g092020 | 36.567 | 134 | 83 | 1 | 56 | 189 | 72 | 203 | 1.47e-20 | 88.6 |
| MS.gene54269.t1 | MTR_2g010960 | 35.461 | 141 | 85 | 2 | 47 | 186 | 9 | 144 | 2.82e-20 | 87.8 |
| MS.gene54269.t1 | MTR_7g094970 | 34.959 | 123 | 74 | 2 | 68 | 184 | 206 | 328 | 1.20e-16 | 77.4 |
| MS.gene54269.t1 | MTR_7g011663 | 33.871 | 124 | 76 | 2 | 68 | 185 | 344 | 467 | 3.98e-16 | 75.9 |
| MS.gene54269.t1 | MTR_3g465090 | 38.211 | 123 | 74 | 2 | 54 | 175 | 13 | 134 | 1.88e-15 | 73.9 |
| MS.gene54269.t1 | MTR_6g064980 | 38.136 | 118 | 71 | 2 | 54 | 170 | 13 | 129 | 3.31e-15 | 73.2 |
| MS.gene54269.t1 | MTR_3g063170 | 35.484 | 124 | 78 | 2 | 54 | 176 | 13 | 135 | 3.51e-15 | 73.2 |
| MS.gene54269.t1 | MTR_7g011770 | 31.707 | 123 | 78 | 2 | 68 | 184 | 240 | 362 | 1.73e-14 | 71.2 |
| MS.gene54269.t1 | MTR_3g063160 | 35.484 | 124 | 78 | 2 | 54 | 176 | 13 | 135 | 1.74e-14 | 70.1 |
| MS.gene54269.t1 | MTR_3g058160 | 36.220 | 127 | 75 | 4 | 64 | 185 | 267 | 392 | 3.73e-14 | 70.5 |
| MS.gene54269.t1 | MTR_3g052120 | 34.848 | 132 | 83 | 3 | 54 | 184 | 13 | 142 | 3.79e-14 | 70.1 |
| MS.gene54269.t1 | MTR_3g058160 | 36.441 | 118 | 72 | 3 | 70 | 185 | 256 | 372 | 3.84e-14 | 70.5 |
| MS.gene54269.t1 | MTR_3g058160 | 36.441 | 118 | 72 | 3 | 70 | 185 | 276 | 392 | 3.86e-14 | 70.5 |
| MS.gene54269.t1 | MTR_3g058160 | 36.441 | 118 | 72 | 3 | 70 | 185 | 269 | 385 | 3.89e-14 | 70.1 |
| MS.gene54269.t1 | MTR_3g058160 | 36.441 | 118 | 72 | 3 | 70 | 185 | 65 | 181 | 4.77e-14 | 70.1 |
| MS.gene54269.t1 | MTR_2g064295 | 34.746 | 118 | 74 | 3 | 70 | 185 | 256 | 372 | 5.96e-14 | 69.7 |
| MS.gene54269.t1 | MTR_3g063140 | 34.677 | 124 | 79 | 2 | 54 | 176 | 13 | 135 | 3.22e-13 | 67.4 |
| MS.gene54269.t1 | MTR_5g030050 | 35.965 | 114 | 63 | 2 | 73 | 184 | 3 | 108 | 4.31e-13 | 66.6 |
| MS.gene54269.t1 | MTR_3g063120 | 35.135 | 111 | 70 | 1 | 68 | 176 | 1 | 111 | 1.16e-12 | 65.9 |
| MS.gene54269.t1 | MTR_6g008560 | 82.353 | 34 | 6 | 0 | 156 | 189 | 1 | 34 | 4.25e-11 | 61.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene54269.t1 | AT5G23960 | 39.011 | 182 | 101 | 5 | 13 | 189 | 3 | 179 | 8.06e-35 | 129 |
| MS.gene54269.t1 | AT5G23960 | 39.011 | 182 | 101 | 5 | 13 | 189 | 3 | 179 | 8.28e-35 | 129 |
| MS.gene54269.t1 | AT1G70080 | 38.889 | 180 | 106 | 4 | 8 | 185 | 57 | 234 | 3.52e-34 | 127 |
| MS.gene54269.t1 | AT3G14540 | 37.500 | 168 | 102 | 2 | 22 | 189 | 65 | 229 | 2.36e-32 | 121 |
| MS.gene54269.t1 | AT3G14540 | 37.500 | 168 | 102 | 2 | 22 | 189 | 65 | 229 | 5.23e-32 | 121 |
| MS.gene54269.t1 | AT1G33750 | 40.606 | 165 | 95 | 2 | 24 | 188 | 73 | 234 | 8.19e-32 | 120 |
| MS.gene54269.t1 | AT3G29410 | 37.853 | 177 | 98 | 3 | 17 | 188 | 64 | 233 | 9.40e-32 | 120 |
| MS.gene54269.t1 | AT3G14490 | 38.068 | 176 | 103 | 4 | 17 | 190 | 60 | 231 | 3.94e-31 | 119 |
| MS.gene54269.t1 | AT5G44630 | 39.106 | 179 | 96 | 5 | 18 | 189 | 14 | 186 | 5.77e-31 | 118 |
| MS.gene54269.t1 | AT1G31950 | 35.227 | 176 | 96 | 4 | 22 | 189 | 70 | 235 | 7.64e-31 | 117 |
| MS.gene54269.t1 | AT1G31950 | 35.227 | 176 | 96 | 4 | 22 | 189 | 70 | 235 | 1.19e-30 | 117 |
| MS.gene54269.t1 | AT1G31950 | 36.686 | 169 | 102 | 3 | 22 | 189 | 70 | 234 | 1.52e-30 | 117 |
| MS.gene54269.t1 | AT3G14520 | 37.349 | 166 | 99 | 3 | 22 | 186 | 68 | 229 | 2.02e-30 | 117 |
| MS.gene54269.t1 | AT4G15870 | 41.071 | 168 | 91 | 5 | 25 | 188 | 75 | 238 | 3.12e-29 | 113 |
| MS.gene54269.t1 | AT4G13300 | 38.554 | 166 | 95 | 4 | 25 | 187 | 20 | 181 | 4.91e-28 | 110 |
| MS.gene54269.t1 | AT4G20210 | 35.955 | 178 | 105 | 4 | 17 | 190 | 58 | 230 | 7.19e-28 | 109 |
| MS.gene54269.t1 | AT3G32030 | 35.450 | 189 | 111 | 5 | 2 | 188 | 54 | 233 | 7.84e-28 | 109 |
| MS.gene54269.t1 | AT4G20200 | 40.000 | 145 | 79 | 3 | 48 | 188 | 92 | 232 | 7.99e-28 | 109 |
| MS.gene54269.t1 | AT3G29110 | 37.500 | 176 | 105 | 4 | 17 | 190 | 55 | 227 | 1.24e-27 | 108 |
| MS.gene54269.t1 | AT4G20230 | 38.621 | 145 | 81 | 3 | 48 | 188 | 92 | 232 | 1.34e-27 | 108 |
| MS.gene54269.t1 | AT4G20230 | 38.621 | 145 | 81 | 3 | 48 | 188 | 104 | 244 | 1.35e-27 | 108 |
| MS.gene54269.t1 | AT1G48800 | 37.079 | 178 | 103 | 4 | 17 | 190 | 63 | 235 | 3.87e-27 | 107 |
| MS.gene54269.t1 | AT1G66020 | 35.057 | 174 | 108 | 3 | 17 | 188 | 56 | 226 | 2.91e-26 | 104 |
| MS.gene54269.t1 | AT1G66020 | 35.057 | 174 | 108 | 3 | 17 | 188 | 56 | 226 | 4.91e-26 | 104 |
| MS.gene54269.t1 | AT2G23230 | 35.754 | 179 | 104 | 5 | 16 | 188 | 55 | 228 | 1.61e-25 | 103 |
| MS.gene54269.t1 | AT2G23230 | 35.754 | 179 | 104 | 5 | 16 | 188 | 55 | 228 | 1.78e-25 | 102 |
| MS.gene54269.t1 | AT3G29410 | 40.000 | 130 | 76 | 1 | 59 | 188 | 1 | 128 | 7.40e-25 | 100 |
| MS.gene54269.t1 | AT3G29190 | 35.862 | 145 | 89 | 2 | 48 | 190 | 89 | 231 | 1.02e-24 | 100 |
| MS.gene54269.t1 | AT2G24210 | 35.758 | 165 | 99 | 3 | 10 | 174 | 39 | 196 | 6.57e-24 | 98.6 |
| MS.gene54269.t1 | AT4G13280 | 37.195 | 164 | 96 | 4 | 27 | 187 | 22 | 181 | 2.69e-23 | 96.7 |
| MS.gene54269.t1 | AT4G13280 | 37.195 | 164 | 96 | 4 | 27 | 187 | 22 | 181 | 2.84e-23 | 96.7 |
| MS.gene54269.t1 | AT1G61680 | 37.956 | 137 | 78 | 2 | 54 | 189 | 77 | 207 | 4.69e-23 | 95.9 |
| MS.gene54269.t1 | AT4G16740 | 32.240 | 183 | 109 | 6 | 12 | 188 | 21 | 194 | 1.05e-22 | 94.0 |
| MS.gene54269.t1 | AT4G16740 | 32.597 | 181 | 107 | 6 | 14 | 188 | 23 | 194 | 1.06e-22 | 94.0 |
| MS.gene54269.t1 | AT4G16740 | 32.597 | 181 | 107 | 6 | 14 | 188 | 23 | 194 | 1.06e-22 | 94.0 |
| MS.gene54269.t1 | AT4G16730 | 37.107 | 159 | 94 | 4 | 28 | 184 | 2 | 156 | 1.99e-22 | 94.0 |
| MS.gene54269.t1 | AT4G16740 | 32.778 | 180 | 106 | 6 | 12 | 185 | 21 | 191 | 2.40e-22 | 94.0 |
| MS.gene54269.t1 | AT3G25820 | 33.529 | 170 | 98 | 5 | 15 | 177 | 45 | 206 | 2.92e-20 | 87.4 |
| MS.gene54269.t1 | AT3G25820 | 33.529 | 170 | 98 | 5 | 15 | 177 | 45 | 206 | 2.92e-20 | 87.4 |
| MS.gene54269.t1 | AT3G25830 | 33.529 | 170 | 98 | 5 | 15 | 177 | 45 | 206 | 3.57e-20 | 87.8 |
| MS.gene54269.t1 | AT3G25820 | 33.529 | 170 | 98 | 5 | 15 | 177 | 45 | 206 | 3.57e-20 | 87.8 |
| MS.gene54269.t1 | AT3G25820 | 32.065 | 184 | 109 | 6 | 15 | 190 | 45 | 220 | 3.89e-20 | 87.4 |
| MS.gene54269.t1 | AT1G61680 | 36.496 | 137 | 73 | 3 | 54 | 189 | 77 | 200 | 9.29e-20 | 86.7 |
| MS.gene54269.t1 | AT4G16730 | 41.593 | 113 | 62 | 2 | 73 | 184 | 1 | 110 | 3.14e-19 | 84.7 |
| MS.gene54269.t1 | AT1G48820 | 34.104 | 173 | 87 | 5 | 17 | 189 | 63 | 208 | 7.85e-19 | 84.0 |
| MS.gene54269.t1 | AT4G02780 | 35.484 | 124 | 72 | 3 | 68 | 184 | 329 | 451 | 2.45e-16 | 76.6 |
| MS.gene54269.t1 | AT3G25810 | 34.815 | 135 | 75 | 5 | 63 | 190 | 93 | 221 | 9.85e-16 | 74.7 |
Find 0 sgRNAs with CRISPR-Local
Find 65 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TGATTATAAACTAATATTAA+TGG | + | 43198:30671-30690 | MS.gene54269:intron | 10.0% |
| !!! | CATTTTTTATGTTTTTAATT+TGG | + | 43198:30304-30323 | MS.gene54269:intron | 10.0% |
| !! | AATTGATAAACTAAAAAAGA+AGG | + | 43198:30018-30037 | MS.gene54269:CDS | 15.0% |
| !! | ATGAGTAAATAAATAGTATA+AGG | - | 43198:29853-29872 | MS.gene54269:intergenic | 15.0% |
| !! | TAATATGAATGTCTAAAAAA+TGG | + | 43198:30436-30455 | MS.gene54269:intron | 15.0% |
| !!! | ATTGTTGTTTAATATTATTG+TGG | + | 43198:30833-30852 | MS.gene54269:intron | 15.0% |
| !! | AAGACACTTAATTATTGTTA+TGG | - | 43198:29926-29945 | MS.gene54269:intergenic | 20.0% |
| !! | AATATTAATGGTATACATGT+AGG | + | 43198:30683-30702 | MS.gene54269:intron | 20.0% |
| !! | GAGAATAATTAAAAGAAATG+AGG | - | 43198:30612-30631 | MS.gene54269:intergenic | 20.0% |
| !!! | TATATGTTTTGAATACATAC+AGG | + | 43198:29970-29989 | MS.gene54269:intron | 20.0% |
| ! | TACAAGAGTTATGTTCAAAA+TGG | + | 43198:30166-30185 | MS.gene54269:CDS | 25.0% |
| ! | TTGAGTAAAACAAATTAGAG+TGG | + | 43198:30335-30354 | MS.gene54269:intron | 25.0% |
| !! | AATAAGTTGAGATATATACC+AGG | - | 43198:30271-30290 | MS.gene54269:intergenic | 25.0% |
| !! | AGACGAAATTAATCAAGTTT+TGG | + | 43198:30135-30154 | MS.gene54269:CDS | 25.0% |
| !! | GTAATATTTGACTTTGTCAT+GGG | + | 43198:30407-30426 | MS.gene54269:intron | 25.0% |
| AAAGATTTACAAGCTAACAG+TGG | - | 43198:30466-30485 | MS.gene54268:intergenic | 30.0% | |
| AAATGTGAGTAACTTGAATC+TGG | - | 43198:29829-29848 | MS.gene54268:intergenic | 30.0% | |
| AATGTGAGTAACTTGAATCT+GGG | - | 43198:29828-29847 | MS.gene54269:intergenic | 30.0% | |
| ATGTGAACATTACACAGATA+AGG | - | 43198:30589-30608 | MS.gene54269:intergenic | 30.0% | |
| CATCAATCCTAATGAGAAAT+CGG | + | 43198:29622-29641 | MS.gene54269:CDS | 30.0% | |
| GGTTCATGGTGAAAAAATAT+TGG | + | 43198:30976-30995 | MS.gene54269:CDS | 30.0% | |
| TGGTGAAAAAATATTGGAAG+AGG | + | 43198:30982-31001 | MS.gene54269:CDS | 30.0% | |
| ! | ATTGACTCAATATGTCGTTT+GGG | + | 43198:30094-30113 | MS.gene54269:CDS | 30.0% |
| ! | CGTAATATTTGACTTTGTCA+TGG | + | 43198:30406-30425 | MS.gene54269:intron | 30.0% |
| ! | TTTTGCTAAATGCAGTTCAT+AGG | + | 43198:29895-29914 | MS.gene54269:intron | 30.0% |
| !! | AATAGTGATTGAAGAGTACT+AGG | + | 43198:29765-29784 | MS.gene54269:intron | 30.0% |
| !! | TGTTTCTGAAGTACGAAAAA+GGG | - | 43198:30725-30744 | MS.gene54269:intergenic | 30.0% |
| !!! | AATCAAGTTGACTTTTTCCA+AGG | - | 43198:30077-30096 | MS.gene54269:intergenic | 30.0% |
| !!! | ATCAAGTTGACTTTTTCCAA+GGG | - | 43198:30076-30095 | MS.gene54269:intergenic | 30.0% |
| AGATGTGTTCAACCAATTCA+AGG | + | 43198:30874-30893 | MS.gene54269:intron | 35.0% | |
| AGGAAACTTCAGTGAAACAT+TGG | + | 43198:30904-30923 | MS.gene54269:CDS | 35.0% | |
| GAATCTGGGCTAATATTAAG+TGG | - | 43198:29814-29833 | MS.gene54269:intergenic | 35.0% | |
| TCCTTATGCTTCAGAATCTA+TGG | + | 43198:29700-29719 | MS.gene54269:CDS | 35.0% | |
| ! | AAAAATATTGGAAGAGGCGT+TGG | + | 43198:30988-31007 | MS.gene54269:CDS | 35.0% |
| ! | GATTGACTCAATATGTCGTT+TGG | + | 43198:30093-30112 | MS.gene54269:CDS | 35.0% |
| ! | TGCAAAACCGATTTCTCATT+AGG | - | 43198:29632-29651 | MS.gene54269:intergenic | 35.0% |
| !! | ACCATAGATTCTGAAGCATA+AGG | - | 43198:29704-29723 | MS.gene54269:intergenic | 35.0% |
| !! | ATTCTCTTGCTGTGCTATTT+AGG | + | 43198:30215-30234 | MS.gene54269:CDS | 35.0% |
| !! | GTGTTTCTGAAGTACGAAAA+AGG | - | 43198:30726-30745 | MS.gene54269:intergenic | 35.0% |
| !! | TTCTCTTGCTGTGCTATTTA+GGG | + | 43198:30216-30235 | MS.gene54269:CDS | 35.0% |
| AAAAAATCTCCCCAAACGCT+AGG | - | 43198:29677-29696 | MS.gene54268:intergenic | 40.0% | |
| AAAAATCTCCCCAAACGCTA+GGG | - | 43198:29676-29695 | MS.gene54268:intergenic | 40.0% | |
| AACATTGGTCAGAGATGTTG+AGG | + | 43198:30919-30938 | MS.gene54269:CDS | 40.0% | |
| ACATTGGTCAGAGATGTTGA+GGG | + | 43198:30920-30939 | MS.gene54269:CDS | 40.0% | |
| ACCATGAACCATCATATGTG+AGG | - | 43198:30966-30985 | MS.gene54269:intergenic | 40.0% | |
| ATAGCACAGCAAGAGAATGA+AGG | - | 43198:30213-30232 | MS.gene54269:intergenic | 40.0% | |
| CTCAAAAACAGAGAAACCCT+TGG | + | 43198:30057-30076 | MS.gene54269:CDS | 40.0% | |
| GGAACCTGATATGAATACTG+CGG | + | 43198:29991-30010 | MS.gene54269:intron | 40.0% | |
| GTATGAAGCCTCACATATGA+TGG | + | 43198:30955-30974 | MS.gene54269:CDS | 40.0% | |
| !! | AGGAGTGTCTTTCGTTTGAT+CGG | + | 43198:30546-30565 | MS.gene54269:intron | 40.0% |
| AACCAATTCAAGGACGAGCA+AGG | + | 43198:30884-30903 | MS.gene54269:CDS | 45.0% | |
| AGATTTCCACCCTAGCGTTT+GGG | + | 43198:29664-29683 | MS.gene54269:CDS | 45.0% | |
| CATGGACTTTACGTTTCACC+TGG | + | 43198:30250-30269 | MS.gene54269:CDS | 45.0% | |
| GCCTCACATATGATGGTTCA+TGG | + | 43198:30962-30981 | MS.gene54269:CDS | 45.0% | |
| TGTGCCGCAGTATTCATATC+AGG | - | 43198:29998-30017 | MS.gene54269:intergenic | 45.0% | |
| TTCCTTGCTCGTCCTTGAAT+TGG | - | 43198:30889-30908 | MS.gene54269:intergenic | 45.0% | |
| !! | CTGTGCTATTTAGGGTGTTG+AGG | + | 43198:30224-30243 | MS.gene54269:CDS | 45.0% |
| !! | TTTAGGGTGTTGAGGCAACA+TGG | + | 43198:30232-30251 | MS.gene54269:CDS | 45.0% |
| !!! | ATTTTTTTTTTACATAAAAT+AGG | + | 43198:30526-30545 | MS.gene54269:intron | 5.0% |
| CAGATTTCCACCCTAGCGTT+TGG | + | 43198:29663-29682 | MS.gene54269:CDS | 50.0% | |
| GATTTCCACCCTAGCGTTTG+GGG | + | 43198:29665-29684 | MS.gene54269:CDS | 50.0% | |
| TTCTGGTCACCTTGAGTCCA+TGG | + | 43198:31018-31037 | MS.gene54269:CDS | 50.0% | |
| !!! | GAGGCGTTGGCTTTTACTTC+TGG | + | 43198:31001-31020 | MS.gene54269:CDS | 50.0% |
| AATCGGTGGCCATGGACTCA+AGG | - | 43198:31030-31049 | MS.gene54269:intergenic | 55.0% | |
| AATCTCCCCAAACGCTAGGG+TGG | - | 43198:29673-29692 | MS.gene54269:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| 43198 | gene | 29605 | 31051 | 29605 | ID=MS.gene54269 |
| 43198 | mRNA | 29605 | 31051 | 29605 | ID=MS.gene54269.t1;Parent=MS.gene54269 |
| 43198 | exon | 29605 | 29721 | 29605 | ID=MS.gene54269.t1.exon1;Parent=MS.gene54269.t1 |
| 43198 | CDS | 29605 | 29721 | 29605 | ID=cds.MS.gene54269.t1;Parent=MS.gene54269.t1 |
| 43198 | exon | 29992 | 30271 | 29992 | ID=MS.gene54269.t1.exon2;Parent=MS.gene54269.t1 |
| 43198 | CDS | 29992 | 30271 | 29992 | ID=cds.MS.gene54269.t1;Parent=MS.gene54269.t1 |
| 43198 | exon | 30876 | 31051 | 30876 | ID=MS.gene54269.t1.exon3;Parent=MS.gene54269.t1 |
| 43198 | CDS | 30876 | 31051 | 30876 | ID=cds.MS.gene54269.t1;Parent=MS.gene54269.t1 |
| Gene Sequence |
| Protein sequence |
