Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene54698.t1 | XP_024631628.1 | 94.3 | 140 | 8 | 0 | 21 | 160 | 9 | 148 | 7.00E-69 | 270 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene54698.t1 | Q9HSF6 | 45.8 | 120 | 65 | 0 | 27 | 146 | 74 | 193 | 2.3e-20 | 100.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene54698.t1 | A0A396JEU9 | 94.3 | 140 | 8 | 0 | 21 | 160 | 9 | 148 | 5.0e-69 | 270.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene051648 | MS.gene54698 | 0.814308 | 1.65E-51 | -1.69E-46 |
| MS.gene053536 | MS.gene54698 | 0.824116 | 9.61E-54 | -1.69E-46 |
| MS.gene053538 | MS.gene54698 | 0.826619 | 2.46E-54 | -1.69E-46 |
| MS.gene053945 | MS.gene54698 | 0.803036 | 4.22E-49 | -1.69E-46 |
| MS.gene05894 | MS.gene54698 | 0.809585 | 1.76E-50 | -1.69E-46 |
| MS.gene059424 | MS.gene54698 | 0.838039 | 3.64E-57 | -1.69E-46 |
| MS.gene061003 | MS.gene54698 | 0.837565 | 4.82E-57 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene54698.t1 | AT5G51080 | 53.285 | 137 | 64 | 0 | 21 | 157 | 121 | 257 | 3.41e-45 | 149 |
| MS.gene54698.t1 | AT3G01410 | 49.265 | 136 | 69 | 0 | 22 | 157 | 154 | 289 | 7.22e-45 | 149 |
| MS.gene54698.t1 | AT3G01410 | 49.265 | 136 | 69 | 0 | 22 | 157 | 154 | 289 | 7.22e-45 | 149 |
| MS.gene54698.t1 | AT5G51080 | 53.676 | 136 | 63 | 0 | 22 | 157 | 185 | 320 | 1.60e-44 | 149 |
| MS.gene54698.t1 | AT5G51080 | 53.676 | 136 | 63 | 0 | 22 | 157 | 185 | 320 | 1.60e-44 | 149 |
| MS.gene54698.t1 | AT1G24090 | 51.773 | 141 | 68 | 0 | 17 | 157 | 211 | 351 | 1.11e-41 | 142 |
Find 40 sgRNAs with CRISPR-Local
Find 114 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGCATAGGTTCCTTAAATT+TGG | 0.076392 | 6.1:-3917377 | None:intergenic |
| TGAGTATAATGGTCTTCTTT+TGG | 0.243282 | 6.1:+3916994 | MS.gene54698:CDS |
| TCTTGTATTGTTGAGTTTGA+TGG | 0.294112 | 6.1:+3916618 | MS.gene54698:CDS |
| CTCTCAGCTTGTTTGCAATC+AGG | 0.296249 | 6.1:+3917069 | MS.gene54698:CDS |
| TGCAACAGTTTGAGGGTTCC+TGG | 0.323750 | 6.1:+3917342 | MS.gene54698:intron |
| TGCATAGGTTCCTTAAATTT+GGG | 0.326607 | 6.1:-3917376 | None:intergenic |
| AAGTCAACAACCCAAATTTA+AGG | 0.331211 | 6.1:+3917366 | MS.gene54698:CDS |
| ATTTGGGTTGTTGACTTTCC+AGG | 0.336100 | 6.1:-3917360 | None:intergenic |
| AATAATTCTGCTGAGTATAA+TGG | 0.382560 | 6.1:+3916983 | MS.gene54698:CDS |
| GCTCCTGCACCAGACCTTCC+AGG | 0.402463 | 6.1:-3916657 | None:intergenic |
| AGAGTAACTTCAAGTCAGTC+AGG | 0.457011 | 6.1:+3917417 | MS.gene54698:CDS |
| GGAGCATCCAGTGGAAATCC+TGG | 0.459158 | 6.1:+3916639 | MS.gene54698:CDS |
| TCCGTTCTGCAGATGGGAGT+CGG | 0.461814 | 6.1:+3916685 | MS.gene54698:CDS |
| CATGGCGTCAGCCAAGGACT+TGG | 0.463996 | 6.1:+3916950 | MS.gene54698:CDS |
| CATGAATATGCTCATATCCT+TGG | 0.464886 | 6.1:-3917036 | None:intergenic |
| AGTGGAAATCCTGGAAGGTC+TGG | 0.475520 | 6.1:+3916648 | MS.gene54698:CDS |
| TATGTCTCTTTATAGGTCCA+TGG | 0.481724 | 6.1:+3916932 | MS.gene54698:intron |
| TCAGGGTCGAACATGTTCCT+AGG | 0.482331 | 6.1:+3917435 | MS.gene54698:CDS |
| CCGTTCTGCAGATGGGAGTC+GGG | 0.496764 | 6.1:+3916686 | MS.gene54698:CDS |
| TTGTTTGAGTGCCAAGTCCT+TGG | 0.498512 | 6.1:-3916961 | None:intergenic |
| GAACCTATGCAATGAGGCTG+TGG | 0.532829 | 6.1:+3917388 | MS.gene54698:CDS |
| GCTCCACAGCCTCATTGCAT+AGG | 0.541509 | 6.1:-3917391 | None:intergenic |
| CAAGTCCTTGGCTGACGCCA+TGG | 0.543645 | 6.1:-3916949 | None:intergenic |
| CTGTTATCCGTTCTGCAGAT+GGG | 0.545170 | 6.1:+3916679 | MS.gene54698:CDS |
| GCTGTTATCCGTTCTGCAGA+TGG | 0.548893 | 6.1:+3916678 | MS.gene54698:CDS |
| GCATAAAATCTACGCTAAAG+TGG | 0.552333 | 6.1:+3915998 | MS.gene54698:CDS |
| AGACCTTCCAGGATTTCCAC+TGG | 0.556723 | 6.1:-3916646 | None:intergenic |
| TAGGTCCATGGCGTCAGCCA+AGG | 0.557191 | 6.1:+3916944 | MS.gene54698:intron |
| AATCCTGGAAGGTCTGGTGC+AGG | 0.565510 | 6.1:+3916654 | MS.gene54698:CDS |
| GTAGTAATATTCAACTTCGC+CGG | 0.574495 | 6.1:-3918051 | None:intergenic |
| CTGAAAGAAGCTAGCAACCA+AGG | 0.584237 | 6.1:+3917019 | MS.gene54698:CDS |
| CAGGGTCGAACATGTTCCTA+GGG | 0.587867 | 6.1:+3917436 | MS.gene54698:CDS |
| CCCGACTCCCATCTGCAGAA+CGG | 0.635424 | 6.1:-3916686 | None:intergenic |
| TTTAAGGAACCTATGCAATG+AGG | 0.642695 | 6.1:+3917382 | MS.gene54698:CDS |
| GAGTTTGATGGAGCATCCAG+TGG | 0.644852 | 6.1:+3916630 | MS.gene54698:CDS |
| GCTGATGCTCAAGCAAATCG+CGG | 0.646058 | 6.1:+3917809 | MS.gene54698:CDS |
| GAGTAACTTCAAGTCAGTCA+GGG | 0.650851 | 6.1:+3917418 | MS.gene54698:CDS |
| CATCCAGTGGAAATCCTGGA+AGG | 0.657104 | 6.1:+3916643 | MS.gene54698:CDS |
| TATGAGCATATTCATGTCCG+AGG | 0.670788 | 6.1:+3917043 | MS.gene54698:CDS |
| AAACAAGCTGAGAGTCACCT+CGG | 0.700596 | 6.1:-3917060 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GCAAAAAAAAAAAAAAATAT+AGG | - | chr6.1:3918029-3918048 | None:intergenic | 10.0% |
| !! | ATTGTTTACAAAATATTACA+TGG | + | chr6.1:3917179-3917198 | MS.gene54698:intron | 15.0% |
| !!! | ATTTACCATCATATTTTTAT+TGG | + | chr6.1:3917316-3917335 | MS.gene54698:intron | 15.0% |
| !!! | TGTAATATTTTGTAAACAAT+TGG | - | chr6.1:3917179-3917198 | None:intergenic | 15.0% |
| !!! | TTTATTTTCATGTTTGTATT+TGG | + | chr6.1:3917978-3917997 | MS.gene54698:intron | 15.0% |
| !! | AAAGTTATGTAAGTTATTTG+TGG | + | chr6.1:3916099-3916118 | MS.gene54698:intron | 20.0% |
| !! | CAAAACCAATAAAAATATGA+TGG | - | chr6.1:3917324-3917343 | None:intergenic | 20.0% |
| !! | TGCAATTCTAAGTAATTATA+TGG | + | chr6.1:3917207-3917226 | MS.gene54698:intron | 20.0% |
| !!! | ATGAAAATTTTGTCATGTTT+AGG | + | chr6.1:3916040-3916059 | MS.gene54698:intron | 20.0% |
| !!! | TTATTGCTATTTCATTTACT+TGG | - | chr6.1:3917902-3917921 | None:intergenic | 20.0% |
| !!! | TTTTTTTTAAAAAGCAGCTT+TGG | - | chr6.1:3917932-3917951 | None:intergenic | 20.0% |
| !!! | TTTTTTTTTTTTTTTGCAGC+CGG | + | chr6.1:3918032-3918051 | MS.gene54698:intron | 20.0% |
| ! | AACACTTTATGTCTCTTTAT+AGG | + | chr6.1:3916925-3916944 | MS.gene54698:intron | 25.0% |
| ! | AATAATTCTGCTGAGTATAA+TGG | + | chr6.1:3916983-3917002 | MS.gene54698:CDS | 25.0% |
| ! | AATTTAAGTGGTACTTTGTA+AGG | - | chr6.1:3917102-3917121 | None:intergenic | 25.0% |
| ! | ACACATTATCTTATAGTTGT+AGG | + | chr6.1:3916384-3916403 | MS.gene54698:intron | 25.0% |
| ! | ATTTAAGTGGTACTTTGTAA+GGG | - | chr6.1:3917101-3917120 | None:intergenic | 25.0% |
| ! | TTTCATGTTTGTATTTGGAA+GGG | + | chr6.1:3917983-3918002 | MS.gene54698:intron | 25.0% |
| !! | AACTTTTATAGCCATACATT+AGG | - | chr6.1:3916489-3916508 | None:intergenic | 25.0% |
| !! | CATGATAACTATTTTATCAG+AGG | + | chr6.1:3916570-3916589 | MS.gene54698:intron | 25.0% |
| !! | CATTTGAAGTGTAAATTACA+TGG | - | chr6.1:3916462-3916481 | None:intergenic | 25.0% |
| !! | TTTGATGAATAGAGTATTCA+CGG | - | chr6.1:3916860-3916879 | None:intergenic | 25.0% |
| !! | TTTTCATGTTTGTATTTGGA+AGG | + | chr6.1:3917982-3918001 | MS.gene54698:intron | 25.0% |
| !!! | ACTCGTTTTTTTATTGTTGA+AGG | + | chr6.1:3917772-3917791 | MS.gene54698:intron | 25.0% |
| !!! | CTCGTTTTTTTATTGTTGAA+GGG | + | chr6.1:3917773-3917792 | MS.gene54698:intron | 25.0% |
| !!! | TTGTTCTGGAAAACTAAAAA+AGG | + | chr6.1:3917545-3917564 | MS.gene54698:intron | 25.0% |
| AAGTCAACAACCCAAATTTA+AGG | + | chr6.1:3917366-3917385 | MS.gene54698:CDS | 30.0% | |
| AGTATTCACGGATAATACTT+TGG | - | chr6.1:3916848-3916867 | None:intergenic | 30.0% | |
| ATCACATGACTAATTTAGAG+AGG | - | chr6.1:3917651-3917670 | None:intergenic | 30.0% | |
| ATCTGAACACTATCTAACAA+AGG | - | chr6.1:3917254-3917273 | None:intergenic | 30.0% | |
| CTAGTCATATTTAACTCGTA+AGG | + | chr6.1:3916540-3916559 | MS.gene54698:intron | 30.0% | |
| TAGTGTTCAGATATAGTGAT+CGG | + | chr6.1:3917262-3917281 | MS.gene54698:intron | 30.0% | |
| TCAAATGTCATCCTAATGTA+TGG | + | chr6.1:3916475-3916494 | MS.gene54698:intron | 30.0% | |
| TCATTCAGATGCAATTTAAG+TGG | - | chr6.1:3917114-3917133 | None:intergenic | 30.0% | |
| TCTTGTATTGTTGAGTTTGA+TGG | + | chr6.1:3916618-3916637 | MS.gene54698:CDS | 30.0% | |
| TGCATAGGTTCCTTAAATTT+GGG | - | chr6.1:3917379-3917398 | None:intergenic | 30.0% | |
| TTCATGTTTGTATTTGGAAG+GGG | + | chr6.1:3917984-3918003 | MS.gene54698:intron | 30.0% | |
| TTGCATAGGTTCCTTAAATT+TGG | - | chr6.1:3917380-3917399 | None:intergenic | 30.0% | |
| ! | ACTTTTACACGATTCTAATC+TGG | + | chr6.1:3916070-3916089 | MS.gene54698:intron | 30.0% |
| ! | AGACTTTTCTGAGTTCTTAT+AGG | + | chr6.1:3917859-3917878 | MS.gene54698:intron | 30.0% |
| ! | AGTATAATGGTCTTCTTTTG+GGG | + | chr6.1:3916996-3917015 | MS.gene54698:CDS | 30.0% |
| ! | CGAAATTGATTTCCTCTATA+AGG | + | chr6.1:3916512-3916531 | MS.gene54698:intron | 30.0% |
| ! | CTTTTACACGATTCTAATCT+GGG | + | chr6.1:3916071-3916090 | MS.gene54698:intron | 30.0% |
| ! | GAGTATAATGGTCTTCTTTT+GGG | + | chr6.1:3916995-3917014 | MS.gene54698:CDS | 30.0% |
| ! | GTTTTGCCTATTAAAACATG+TGG | - | chr6.1:3917674-3917693 | None:intergenic | 30.0% |
| ! | TGAGTATAATGGTCTTCTTT+TGG | + | chr6.1:3916994-3917013 | MS.gene54698:CDS | 30.0% |
| !!! | TAAGCCTAGTTTTAGTGTAT+GGG | + | chr6.1:3916184-3916203 | MS.gene54698:intron | 30.0% |
| !!! | TGTGATCCACATGTTTTAAT+AGG | + | chr6.1:3917665-3917684 | MS.gene54698:intron | 30.0% |
| !!! | TTAAGCCTAGTTTTAGTGTA+TGG | + | chr6.1:3916183-3916202 | MS.gene54698:intron | 30.0% |
| ATACCCCATACACTAAAACT+AGG | - | chr6.1:3916191-3916210 | None:intergenic | 35.0% | |
| CATGAATATGCTCATATCCT+TGG | - | chr6.1:3917039-3917058 | None:intergenic | 35.0% | |
| GAACAAAACACAATCAAGAG+AGG | - | chr6.1:3917531-3917550 | None:intergenic | 35.0% | |
| GCATAAAATCTACGCTAAAG+TGG | + | chr6.1:3915998-3916017 | MS.gene54698:CDS | 35.0% | |
| GGTATACACTTTGTCTCATT+TGG | + | chr6.1:3917457-3917476 | MS.gene54698:intron | 35.0% | |
| GTAGTAATATTCAACTTCGC+CGG | - | chr6.1:3918054-3918073 | None:intergenic | 35.0% | |
| TATGTCTCTTTATAGGTCCA+TGG | + | chr6.1:3916932-3916951 | MS.gene54698:intron | 35.0% | |
| TGGAAAACTAAAAAAGGTCG+AGG | + | chr6.1:3917551-3917570 | MS.gene54698:intron | 35.0% | |
| TTTAAGGAACCTATGCAATG+AGG | + | chr6.1:3917382-3917401 | MS.gene54698:CDS | 35.0% | |
| !! | CTCTTGATTGTGTTTTGTTC+TGG | + | chr6.1:3917531-3917550 | MS.gene54698:intron | 35.0% |
| !!! | AAGCCTAGTTTTAGTGTATG+GGG | + | chr6.1:3916185-3916204 | MS.gene54698:intron | 35.0% |
| !!! | AAGCTATTTTTCCACATGAG+TGG | + | chr6.1:3916281-3916300 | MS.gene54698:intron | 35.0% |
| !!! | ATTGGTTTTGCAACAGTTTG+AGG | + | chr6.1:3917334-3917353 | MS.gene54698:intron | 35.0% |
| !!! | TTGGTTTTGCAACAGTTTGA+GGG | + | chr6.1:3917335-3917354 | MS.gene54698:intron | 35.0% |
| ACACGGGTGACATTAAATCT+GGG | - | chr6.1:3916791-3916810 | None:intergenic | 40.0% | |
| AGAGTAACTTCAAGTCAGTC+AGG | + | chr6.1:3917417-3917436 | MS.gene54698:CDS | 40.0% | |
| ATTAAATCTGGGCCACACAA+AGG | - | chr6.1:3916770-3916751 | None:intergenic | 40.0% | |
| GAGTAACTTCAAGTCAGTCA+GGG | + | chr6.1:3917418-3917437 | MS.gene54698:CDS | 40.0% | |
| GTCACCGTGACATTAAATCT+GGG | + | chr6.1:3916740-3916759 | MS.gene54698:intron | 40.0% | |
| GTCACCGTGACATTAAATCT+GGG | - | chr6.1:3916759-3916740 | None:intergenic | 40.0% | |
| TATGAGCATATTCATGTCCG+AGG | + | chr6.1:3917043-3917062 | MS.gene54698:CDS | 40.0% | |
| TGAGACAAAGTGTATACCCT+AGG | - | chr6.1:3917455-3917474 | None:intergenic | 40.0% | |
| TGTCACCGTGACATTAAATC+TGG | + | chr6.1:3916739-3916758 | MS.gene54698:intron | 40.0% | |
| TGTCACCGTGACATTAAATC+TGG | - | chr6.1:3916758-3916739 | None:intergenic | 40.0% | |
| !! | ATTTGGGTTGTTGACTTTCC+AGG | - | chr6.1:3917363-3917382 | None:intergenic | 40.0% |
| AAACAAGCTGAGAGTCACCT+CGG | - | chr6.1:3917063-3917082 | None:intergenic | 45.0% | |
| AATCGCGGCAAAAATCTTGG+AGG | + | chr6.1:3917824-3917843 | MS.gene54698:CDS | 45.0% | |
| ACACAACACACACCTTTGTG+TGG | + | chr6.1:3916765-3916784 | MS.gene54698:intron | 45.0% | |
| ACATTAAATCTGGGCCACAC+GGG | - | chr6.1:3916768-3916749 | None:intergenic | 45.0% | |
| CACACGGGTGACATTAAATC+TGG | - | chr6.1:3916792-3916811 | None:intergenic | 45.0% | |
| CAGATTTAATGTCACCCGTG+TGG | + | chr6.1:3916790-3916809 | MS.gene54698:intron | 45.0% | |
| CTACGCTAAAGTGGTGTGTA+AGG | + | chr6.1:3916007-3916026 | MS.gene54698:intron | 45.0% | |
| CTGAAAGAAGCTAGCAACCA+AGG | + | chr6.1:3917019-3917038 | MS.gene54698:CDS | 45.0% | |
| CTGTTATCCGTTCTGCAGAT+GGG | + | chr6.1:3916679-3916698 | MS.gene54698:CDS | 45.0% | |
| GACATTAAATCTGGGCCACA+CGG | - | chr6.1:3916767-3916748 | None:intergenic | 45.0% | |
| GCAAATCGCGGCAAAAATCT+TGG | + | chr6.1:3917821-3917840 | MS.gene54698:CDS | 45.0% | |
| GTGAATACTGAGTGGCACTT+TGG | + | chr6.1:3916708-3916727 | MS.gene54698:intron | 45.0% | |
| GTGGCCCAGATTTAATGTCA+CGG | + | chr6.1:3916784-3916803 | MS.gene54698:intron | 45.0% | |
| GTGGCCCAGATTTAATGTCA+CGG | - | chr6.1:3916803-3916784 | None:intergenic | 45.0% | |
| TGACTAGCAACGCCTTATAG+AGG | - | chr6.1:3916527-3916546 | None:intergenic | 45.0% | |
| TTGTTTGAGTGCCAAGTCCT+TGG | - | chr6.1:3916964-3916983 | None:intergenic | 45.0% | |
| ! | ACACAAAGGTGTGTGTTGTG+TGG | - | chr6.1:3916766-3916785 | None:intergenic | 45.0% |
| ! | CTCTCAGCTTGTTTGCAATC+AGG | + | chr6.1:3917069-3917088 | MS.gene54698:CDS | 45.0% |
| !! | AAGAGTGTTGTCCACTCATG+TGG | - | chr6.1:3916295-3916314 | None:intergenic | 45.0% |
| AGACCTTCCAGGATTTCCAC+TGG | - | chr6.1:3916649-3916668 | None:intergenic | 50.0% | |
| AGTGGAAATCCTGGAAGGTC+TGG | + | chr6.1:3916648-3916667 | MS.gene54698:CDS | 50.0% | |
| CAGGGTCGAACATGTTCCTA+GGG | + | chr6.1:3917436-3917455 | MS.gene54698:CDS | 50.0% | |
| CATCCAGTGGAAATCCTGGA+AGG | + | chr6.1:3916643-3916662 | MS.gene54698:CDS | 50.0% | |
| GAACCTATGCAATGAGGCTG+TGG | + | chr6.1:3917388-3917407 | MS.gene54698:CDS | 50.0% | |
| GCTGATGCTCAAGCAAATCG+CGG | + | chr6.1:3917809-3917828 | MS.gene54698:CDS | 50.0% | |
| GCTGTTATCCGTTCTGCAGA+TGG | + | chr6.1:3916678-3916697 | MS.gene54698:CDS | 50.0% | |
| TCAGGGTCGAACATGTTCCT+AGG | + | chr6.1:3917435-3917454 | MS.gene54698:CDS | 50.0% | |
| TGCAACAGTTTGAGGGTTCC+TGG | + | chr6.1:3917342-3917361 | MS.gene54698:intron | 50.0% | |
| ! | GAGTTTGATGGAGCATCCAG+TGG | + | chr6.1:3916630-3916649 | MS.gene54698:CDS | 50.0% |
| AATCCTGGAAGGTCTGGTGC+AGG | + | chr6.1:3916654-3916673 | MS.gene54698:CDS | 55.0% | |
| GCTCCACAGCCTCATTGCAT+AGG | - | chr6.1:3917394-3917413 | None:intergenic | 55.0% | |
| GGAGTCGGGTGAATACTGAG+TGG | + | chr6.1:3916700-3916719 | MS.gene54698:intron | 55.0% | |
| TCCGTTCTGCAGATGGGAGT+CGG | + | chr6.1:3916685-3916704 | MS.gene54698:CDS | 55.0% | |
| ! | GGAGCATCCAGTGGAAATCC+TGG | + | chr6.1:3916639-3916658 | MS.gene54698:CDS | 55.0% |
| CAAGTCCTTGGCTGACGCCA+TGG | - | chr6.1:3916952-3916971 | None:intergenic | 60.0% | |
| CATGGCGTCAGCCAAGGACT+TGG | + | chr6.1:3916950-3916969 | MS.gene54698:CDS | 60.0% | |
| CCCGACTCCCATCTGCAGAA+CGG | - | chr6.1:3916689-3916708 | None:intergenic | 60.0% | |
| CCGTTCTGCAGATGGGAGTC+GGG | + | chr6.1:3916686-3916705 | MS.gene54698:CDS | 60.0% | |
| TAGGTCCATGGCGTCAGCCA+AGG | + | chr6.1:3916944-3916963 | MS.gene54698:intron | 60.0% | |
| GCTCCTGCACCAGACCTTCC+AGG | - | chr6.1:3916660-3916679 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6.1 | gene | 3915960 | 3918076 | 3915960 | ID=MS.gene54698 |
| chr6.1 | mRNA | 3915960 | 3918076 | 3915960 | ID=MS.gene54698.t1;Parent=MS.gene54698 |
| chr6.1 | exon | 3915960 | 3916019 | 3915960 | ID=MS.gene54698.t1.exon1;Parent=MS.gene54698.t1 |
| chr6.1 | CDS | 3915960 | 3916019 | 3915960 | ID=cds.MS.gene54698.t1;Parent=MS.gene54698.t1 |
| chr6.1 | exon | 3916615 | 3916707 | 3916615 | ID=MS.gene54698.t1.exon2;Parent=MS.gene54698.t1 |
| chr6.1 | CDS | 3916615 | 3916707 | 3916615 | ID=cds.MS.gene54698.t1;Parent=MS.gene54698.t1 |
| chr6.1 | exon | 3916947 | 3917090 | 3916947 | ID=MS.gene54698.t1.exon3;Parent=MS.gene54698.t1 |
| chr6.1 | CDS | 3916947 | 3917090 | 3916947 | ID=cds.MS.gene54698.t1;Parent=MS.gene54698.t1 |
| chr6.1 | exon | 3917350 | 3917457 | 3917350 | ID=MS.gene54698.t1.exon4;Parent=MS.gene54698.t1 |
| chr6.1 | CDS | 3917350 | 3917457 | 3917350 | ID=cds.MS.gene54698.t1;Parent=MS.gene54698.t1 |
| chr6.1 | exon | 3917794 | 3917845 | 3917794 | ID=MS.gene54698.t1.exon5;Parent=MS.gene54698.t1 |
| chr6.1 | CDS | 3917794 | 3917845 | 3917794 | ID=cds.MS.gene54698.t1;Parent=MS.gene54698.t1 |
| chr6.1 | exon | 3918051 | 3918076 | 3918051 | ID=MS.gene54698.t1.exon6;Parent=MS.gene54698.t1 |
| chr6.1 | CDS | 3918051 | 3918076 | 3918051 | ID=cds.MS.gene54698.t1;Parent=MS.gene54698.t1 |
| Gene Sequence |
| Protein sequence |
