AlfalfaGEDB | MS.gene54772

M. sativa cultivar XinJiangDaYe / MS.gene54772

KEGG: -
GO: GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0097159 GO:1901363
PFAM: PF00249.34

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene54772.t1	XP_003591951.2	94	1343	49	5	11	1350	342	1655	0.00E+00	2423.7

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene54772.t1	O75376	27.8	263	169	6	282	527	239	497	5.9e-16	88.6

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene54772.t1	G7I9K5	94.0	1343	49	5	11	1350	342	1655	0.0e+00	2423.7

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene54772.t1	TF	MYB

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene050551	MS.gene54772	0.812173	4.84E-51	-1.69E-46
MS.gene051066	MS.gene54772	0.808773	2.63E-50	-1.69E-46
MS.gene052036	MS.gene54772	0.81146	6.92E-51	-1.69E-46
MS.gene055513	MS.gene54772	0.800288	1.55E-48	-1.69E-46
MS.gene056519	MS.gene54772	0.80162	8.26E-49	-1.69E-46
MS.gene056831	MS.gene54772	0.815158	1.07E-51	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene54772.t1	MTR_1g095570	93.969	1343	49	5	11	1350	342	1655	0.0	2548
MS.gene54772.t1	MTR_1g095570	93.770	1252	46	5	102	1350	1	1223	0.0	2405
MS.gene54772.t1	MTR_6g033350	52.640	606	250	12	390	972	1	592	1.85e-165	514
MS.gene54772.t1	MTR_6g033350	40.351	171	65	7	1047	1196	595	749	3.27e-19	94.4
MS.gene54772.t1	MTR_6g033340	43.309	411	201	6	11	405	345	739	1.87e-84	293
MS.gene54772.t1	MTR_6g033345	47.521	242	121	5	563	799	1	241	5.27e-46	166

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene54772.t1	AT3G52250	35.322	838	465	24	11	818	439	1229	6.46e-120	411
MS.gene54772.t1	AT3G52250	38.926	149	61	8	1058	1199	1479	1604	3.30e-13	75.5
MS.gene54772.t1	AT3G52250	35.322	838	465	24	11	818	439	1229	6.46e-120	411
MS.gene54772.t1	AT3G52250	38.926	149	61	8	1058	1199	1479	1604	3.30e-13	75.5

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Find 305 sgRNAs with CRISPR-Local

Find 405 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACGGTTTGAAAGATTTA+AGG	0.182155	1.2:-72851122	MS.gene54772:CDS
AAAACTAACTTGATGGCATC+AGG	0.454263	1.2:-72849496	MS.gene54772:CDS
AAACTGAAGAGGAAAGATGT+TGG	0.549660	1.2:-72849544	MS.gene54772:CDS
AAACTTATGTTCTAGCTACG+GGG	0.733759	1.2:-72851305	MS.gene54772:CDS
AAAGAAGAATCGGGCAAGGA+TGG	0.476975	1.2:+72847561	None:intergenic
AAAGGGGTATGATCAATCCT+TGG	0.529771	1.2:-72849711	MS.gene54772:CDS
AAATGTTTCATTCTCACCTG+TGG	0.598857	1.2:-72848285	MS.gene54772:CDS
AAATTAATAATCTCTGTTGT+TGG	0.431752	1.2:+72849883	None:intergenic
AACAGTCTCAACATGGCTCC+CGG	0.515507	1.2:+72848013	None:intergenic
AACATTAATTGCACAAACAA+CGG	0.536070	1.2:+72848631	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AATATCAACACATCAAACAC+AGG	+	chr1.2:72848603-72848622	None:intergenic	30.0%
AATGAATCAAGAGAAATCAG+TGG	-	chr1.2:72850490-72850509	MS.gene54772:intron	30.0%
AGAAACGTTTACAATGTTCT+TGG	+	chr1.2:72850219-72850238	None:intergenic	30.0%
AGCTAACAAGAAAGAAGAAT+CGG	+	chr1.2:72851631-72851650	None:intergenic	30.0%
AGTGATGAGTTATGGTTATT+GGG	-	chr1.2:72851560-72851579	MS.gene54772:CDS	30.0%
ATCTTTGTCAACAACACATT+GGG	+	chr1.2:72850803-72850822	None:intergenic	30.0%
ATGAATCAAGAGAAATCAGT+GGG	-	chr1.2:72850491-72850510	MS.gene54772:intron	30.0%
ATGTCATTGCAGGTAATAAA+AGG	-	chr1.2:72849774-72849793	MS.gene54772:CDS	30.0%
ATGTCTTGAAAATGTAGATG+TGG	-	chr1.2:72850522-72850541	MS.gene54772:intron	30.0%
CAAATCATTATGGCATTCTT+CGG	-	chr1.2:72851317-72851336	MS.gene54772:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1.2	gene	72847068	72852133	72847068	ID=MS.gene54772
chr1.2	mRNA	72847068	72852133	72847068	ID=MS.gene54772.t1;Parent=MS.gene54772
chr1.2	exon	72850942	72852133	72850942	ID=MS.gene54772.t1.exon1;Parent=MS.gene54772.t1
chr1.2	CDS	72850942	72852133	72850942	ID=cds.MS.gene54772.t1;Parent=MS.gene54772.t1
chr1.2	exon	72847068	72849928	72847068	ID=MS.gene54772.t1.exon2;Parent=MS.gene54772.t1
chr1.2	CDS	72847068	72849928	72847068	ID=cds.MS.gene54772.t1;Parent=MS.gene54772.t1

Gene Sequence

>MS.gene54772

ATGCCAAAACCTAACTTCAACCTTATTGCAGGCGTGGATGATAAATTATTGGGGAAGGCTGGAAATGCAGACAATGATGTCAGTAATTTGACTGATTCACCTGCTCCTGGTTTTCAGAATCTCCTGCAGAAGTTTTATCTTAACCTTGATAAGTTGGATGTTGACTCCTTGAATAGTTTGGGCTCTTCAATTGTTGAGTTAGTACAGTCTGATGATCCAAGTTCTGACGATTCTGGTCTAGTTCGGACCAATGCTATTAATAAGTTGCTGATATGGAAAGCTGACATTTCGAAGGTATTGGAGATGACTGAATCTGAAATTGATTTGCTTGAAAATGAACTGAAGTCTCTAAAATCTGAATCTGTGGATAGATCTCAGTGTCCAGTAGCATCGGGCTCCCAGCAGGCAGATAGCAGTTCAAAATTTTACGAACAGCGTGTTGAAGTCTCTCAGAAGGTCATTCGGCCAGTACCATTGAAAATTATTTCTTCTGATGAACCCAATACAGTGAAGATGCCCCAGTCAACTAATTTATGTAGCATTCATGAAAATGACAAGGAAGAGGATATCGATAGTCCTGGATCAGCAACTTCTAAATTTGTTGAGCCTCTGCCGTTGGTAAATGCAGTTTCTTCAAGTGATACCAGGGGCTATGATAACTTATCAAGGGACATGAATGCTGTTCAATCTACTATGATGAAATGCTTTGTCCGCTGTAATAGGAAAAATACTAGTGTATCTGCCTGTAATGATGTCAATACACCTACAGAAGTAAAGGATAGGTTGGGTGATGTTACCTTTGGAGCAAACTTATGTTCTAGCTACGGGGATACTTATAAGTCAATTATTGCTTCAAATAAAGAATCTGCAAACAGAGCGCACAAAGTATTTACCAAGTTAGTTCCCAAAGAATGTAAAAAGCATGGTAACATGGGAGTCAGCAATGATTTGTCCTCTCATACATTGATTGTGCAAAAATTTGCCGAGAAAAAACGGTTTGAAAGATTTAAGGAGAGAGTTATTGCACTCAAGTTCAAAGCCTTGCGTCACTTGTGGAAAGAAGATATGCGCCTACTGTCTATTAGGAAATGCCGCCCAAGATCGCATAAGAAAAATGAACTAAATGTGCGAACTACCTGTAGCAGTAATATGAAGAACCGATCTTCCATTCGTTCACGGTTTACTTTCCCTGGTATAGATCTTTCCCCCGAATCTTTTGCTTAACTTATTCCAGTGAATGTGATTTTGCATTGTCTTTCAATTTGATGCAGTTCAGTTATGTCATGTAGTTTACGAATGAGAATAAAAGAAATAATGACAGGGTGGTTGTTGATGTACTGAAATAGGTTTGTTTATATTAAGTTTACCTAAATACTCTGTCTTAAGAGTATAAGAGCTTTGCAAAACCTTTTCAATTTGATTTTAAGACCTTTGAGAGTCGGTAAATTCTTTTAATACATATAGTGTAAAATTGTTTACATGATTATCTGGCATATTATTTTTTGGTAAAAACAGCATAGTTAAATTATTTTCCTGTGTTTGATGTGTTGATATTATTTGGCTTTCCGTTAATTGTTATGGTGTACAGTTATTTCCGCAATTGGTTTTCATTACAACATTCTTTTGCATATTACTTTTTGGTAAATTACCATAGTTAAATTATATTTTTGCTGTTTGATGTGATGAGGATCTATGACTCCGTAGTTGCTTTTTTGTTGTCAAATTCTGATGGAAATAATTAAATACGATCAAGTGGCTCTGTGATGCTGACATCTCTGTCACAAGATGTGACTGTGTTTTTCTTTACCATGCAGCTTTTATTTTTCGTATGAAAAAAAGATTCTTTCAATTCTAATGTTCATTTTAATGCTATTTATACCTTCGACATAATATAGGGTAGATACTACTCCCTCCGGTCCTATTTATAAAAGAAATTTGGGTCAACAAAAGTGGATGTATTTGGTCCAATTTTTTAACTAGATACATTAACTTTTTTTGACCAAAATTTCTCTTATAAATAGGACCGGAGGGAGTATTATTTGACCCGGGCTTGTACAAGATGATTGTATGTAATTTTAGAGTGGTGATACCTGTGATGATGATGTTTTATTTTATAGTTGTTTGTTGAGTTCCTAAAATATCTAATCTTTTTGTTGTGATGATTACTAAGTATTTTTCTCATTCTTCATTTTCCAATGAATGCAGCTGGAAACCATCTAAGCTTGGTTCCAACAACAGAGATTATTAATTTCACAAGCAAACTTCTGTCAGAATCTCAAGCACAACTTCAGAGAAACACCTTGAAGATGCCTGCATTAATATTGGACGAGAAGGAGAAGATGGTTACAAAGTTCATATCTAGTAATGGGCTGGTTGAAGATCCGTTGGCTATTGAGAAAGAAAGGGGTATGATCAATCCTTGGACATCAGAAGAGAAAGAATTATTCTTGAAGAAATTTGCTGCATTTGGAAAAGATTTCCGGAAAATTGCTTCTTTCCTTGATCACAAGACAACTGCAGACTGCGTTGAGTTCTACTACAAGAACCACAAATCCGAATGTTTTGAGAAACTGAAGAGGAAAGATGTTGGTAAGCTAGGGAAGTCATTTGCAGCTAAAACTAACTTGATGGCATCAGGTAAAAAATGGAATCATGAAGTTAATGTTTCTTCACTTGATATTTTGAGTGCTGCTTCAGTGATGGCAGATGTCATTGCAGGTAATAAAAGGATACGAGGAAGATTCCTTCTGGGATATGGTAATGTAAAAGCATCAAGGGGCGAGGACAGCATTATAGAGAGATCAAACAGTTTTGACACTCTTGGGGATGAAAGGGAGACTGCTGCTGCAGCTGATGTATTGGCTGGTATATGTGGTTCATTTTCATCTGAGGCTATGAGTTCCTGCATAACAAGTTCAATTGATCCTGTAGATGGTAACAAGGAAACGAAGTTCTTGAAAGCAAACCCTATATTCAAACAACCCTTGACACCTGATATTTCACAGAATGCTGATGATGAGACTTGTTCAGATGAGAGCTGCGGCGAAGCTACTGAGTGGACAGATGATGAGACAGCAGCTTTTCTTCAGGCTGTATCATCTTTTGGTAAGGATTTTGCGAAGATATCACGGTGTGTAGGTACAAAGACCCAAGAACATTGTAAACGTTTCTTCAGCAAGACTCGGAAATGTCTTGGATTGAATCTTGAAAACCCCATACCTGGAATTAACGGATCCCCGCTGAATGATGATGCAAATGGCGGTGAGAGTGATACAGATGATGCATGTGTTGTTGAGGCAGGCTCAGTGGTTGATGCTGATAAGTCTGGAAATAAAACAGACGAGGACCTGCCTTCTGATGCCTTGAATACATTCCATGATGAATCCAATCCTCTGGAAGCTACGAGCCTGTCTGCTAAATTAAATGAATCAAGAGAAATCAGTGGGACCGAAGTATGTCTTGAAAATGTAGATGTGGCTTCCGTTGTTTGTGCAATTAATGTTGAATCTAAGCTAGGCTCTGATGTTAGTGGAGTTGGCTTGTGCACAACTGACAAGTCTGGTTCAGTCAATGGAGTTGGCTTGGGAGGTACAGTTAGAGAATCTATTTCTGCTTCAGAAATAATTAAACCAAGGGAGTGTGGTTCTGTTGCTTTGGATAGAACGGTTTCCGAGGGTTCTTCTGGGGGTCTTTGTCTTGGAAATGAAGTGGAAAGGCAAAGAGTGTCAGCACCCCAATGTGTTGTTGACAAAGATGTTAAACATATAGCAGATGCAGGTGTTGTAGTTGAGTTGAAAAGCTGTGTCTTAGAATCGAGCACTGCAGCAAATGTTTCATTCTCACCTGTGGTCAATTCATGTTCAGGATTGAGTTTTGGTGCTGAAAATAAGCATGTCTCCTTTGGAAAGCCTCATACGTCAGCACTGTCTATGAGTGATCTTCAGGCAACTGCAAATTCATTGTTGCTAAAAGCTGCCGCTGCTCAATGTGAGAAAACAGTTAGCCAGGATCGACTGTCCTCTACTTGTGATATTCAGGGAGGTAGAGATATGCGGTGTCATAGCTCTGGTAGTAATGGGGACCATCAGCTTCCTCTTTCCGGGAGCCATGTTGAGACTGTTAGTGTTCTCCAGGGCTATTCCATGCAGGTGCCCATAAAAAAAGAAGTGGATGGGGATGTGAATTGCAGCAGTTCAGCAGCTGAGTTTCCTCTTCGACCCCAAAAGGTCAAACAGACTGATGGTCATTTCAAATCATTATGGCATTCTTCGGATTCAGAAAAAACATCCAGAAATGGTGATGTGAAACTGTTTGGAAAGATATTAACCAATCCATCTTCCACTCAGAATCCTATTTTGACTGCGAAGCGAAGTGAAGAAAATGGTTCCCATCATCCCAAGTTGAACAACAAGTCTTCTAATCTGAATTTTACTGGCCATCAAAATTCTGATGAAAATTTAAAATTTTTGAAGTTTGGCCTTGAAAATGTTCCAGTGATGAGTTATGGTTATTGGGAAGGGAATGCAATACAAAGTAGACAGTCTGGTCTCCCATCCTTGCCCGATTCTTCTTTCTTGTTAGCTAAATATCCTGCTGCGTTTAGTAATTATCCTACATCATCTTCCAATTTGGAGCAACAGCCACCATTGCAGGCCTTTGCCAAGAATAGTGAACGGCATTTGACTGGTGCATCTACTTTTACAGCTAGAGACATGAATGGCAGCAATGCGATGCTTGATTATCAGATGTTTAGAGGTAGAGATGGTCCACAAGTTCAGCCATTTATGGTTGATGTCCAACACCGACAAGATGTATTCTCTGAGATGCAGAGAAGAAACAGTTTTGAAGCAATCTCCAGCTTGCAGCAGCAAGGAAGGGGAATGATGGGAATGAATAGCGTTGGAAGGCCTGGGATTCTAGTGGGAGGATCATGCAGCGGTGTCTCGGATCCTGTGGCGGCAATTAAAATGCATTATTCCACCAATTCTGACAAGTATGGTGGTCAAAACGGAGGTGTTGTTAGAGATGATGAATCTTGGGGAGGGAAAGGGGACTTAGGCAGGTAG

Protein sequence

>MS.gene54772.t1

MPKPNFNLIAGVDDKLLGKAGNADNDVSNLTDSPAPGFQNLLQKFYLNLDKLDVDSLNSLGSSIVELVQSDDPSSDDSGLVRTNAINKLLIWKADISKVLEMTESEIDLLENELKSLKSESVDRSQCPVASGSQQADSSSKFYEQRVEVSQKVIRPVPLKIISSDEPNTVKMPQSTNLCSIHENDKEEDIDSPGSATSKFVEPLPLVNAVSSSDTRGYDNLSRDMNAVQSTMMKCFVRCNRKNTSVSACNDVNTPTEVKDRLGDVTFGANLCSSYGDTYKSIIASNKESANRAHKVFTKLVPKECKKHGNMGVSNDLSSHTLIVQKFAEKKRFERFKERVIALKFKALRHLWKEDMRLLSIRKCRPRSHKKNELNVRTTCSSNMKNRSSIRSRFTFPAGNHLSLVPTTEIINFTSKLLSESQAQLQRNTLKMPALILDEKEKMVTKFISSNGLVEDPLAIEKERGMINPWTSEEKELFLKKFAAFGKDFRKIASFLDHKTTADCVEFYYKNHKSECFEKLKRKDVGKLGKSFAAKTNLMASGKKWNHEVNVSSLDILSAASVMADVIAGNKRIRGRFLLGYGNVKASRGEDSIIERSNSFDTLGDERETAAAADVLAGICGSFSSEAMSSCITSSIDPVDGNKETKFLKANPIFKQPLTPDISQNADDETCSDESCGEATEWTDDETAAFLQAVSSFGKDFAKISRCVGTKTQEHCKRFFSKTRKCLGLNLENPIPGINGSPLNDDANGGESDTDDACVVEAGSVVDADKSGNKTDEDLPSDALNTFHDESNPLEATSLSAKLNESREISGTEVCLENVDVASVVCAINVESKLGSDVSGVGLCTTDKSGSVNGVGLGGTVRESISASEIIKPRECGSVALDRTVSEGSSGGLCLGNEVERQRVSAPQCVVDKDVKHIADAGVVVELKSCVLESSTAANVSFSPVVNSCSGLSFGAENKHVSFGKPHTSALSMSDLQATANSLLLKAAAAQCEKTVSQDRLSSTCDIQGGRDMRCHSSGSNGDHQLPLSGSHVETVSVLQGYSMQVPIKKEVDGDVNCSSSAAEFPLRPQKVKQTDGHFKSLWHSSDSEKTSRNGDVKLFGKILTNPSSTQNPILTAKRSEENGSHHPKLNNKSSNLNFTGHQNSDENLKFLKFGLENVPVMSYGYWEGNAIQSRQSGLPSLPDSSFLLAKYPAAFSNYPTSSSNLEQQPPLQAFAKNSERHLTGASTFTARDMNGSNAMLDYQMFRGRDGPQVQPFMVDVQHRQDVFSEMQRRNSFEAISSLQQQGRGMMGMNSVGRPGILVGGSCSGVSDPVAAIKMHYSTNSDKYGGQNGGVVRDDESWGGKGDLGR