AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene056831


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene056831.t1 MTR_8g028640 92.843 489 29 3 1 486 1 486 0.0 714
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene056831.t1 AT4G02720 82.895 152 22 2 333 481 264 414 1.34e-79 254

Find 133 sgRNAs with CRISPR-Local

Find 143 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATCGTTGAAGCACTGTATT+TGG 0.157507 8.4:+67036984 MS.gene056831:CDS
AACGATGATTTAGAAGATTA+TGG 0.235360 8.4:+67037037 MS.gene056831:CDS
ATTATGAAGAGAAGGCTAAA+AGG 0.253662 8.4:+67037944 MS.gene056831:CDS
TTACGATTGCCGAATTTCTT+TGG 0.292989 8.4:-67036845 None:intergenic
GGTCCAACTCATGATCCTTT+TGG 0.336959 8.4:+67038030 MS.gene056831:CDS
GGATGAATGCAATTCGTATT+AGG 0.351458 8.4:+67037869 MS.gene056831:CDS
TATCGTGGTGTCTAGGGTTT+CGG 0.364175 8.4:-67036796 None:intergenic
GAAAGAGGAGGAAGAGTAGT+AGG 0.367987 8.4:+67037338 MS.gene056831:CDS
TCAGCTCTTGGAAGCGGCAT+TGG 0.368096 8.4:-67037676 None:intergenic
TACGATTGCCGAATTTCTTT+GGG 0.369451 8.4:-67036844 None:intergenic
ATCTCGACCGCAACGATTCT+CGG 0.383501 8.4:+67036879 MS.gene056831:CDS
TCCTCCGAAGCCTCGCTAAC+CGG 0.389555 8.4:-67037490 None:intergenic
TTTCCGTTATCGTGGTGTCT+AGG 0.392103 8.4:-67036803 None:intergenic
CGGAGTCAGGTGTGCGGCGG+CGG 0.407742 8.4:-67036670 None:intergenic
GAAGGCTAAAAGGGAGCATA+AGG 0.408568 8.4:+67037954 MS.gene056831:CDS
GGCGGCGGTCGTTGTGTCTC+TGG 0.409048 8.4:-67036655 None:intergenic
TGAGAAAATTGATGTGAAGA+AGG 0.409970 8.4:+67037078 MS.gene056831:CDS
AATTGAGTTGGGTTCTGATT+CGG 0.410027 8.4:+67037513 MS.gene056831:CDS
CGGCTTGTGCAGCGTCATAT+TGG 0.412941 8.4:+67037994 MS.gene056831:CDS
AACCATCTCCCAAAGAAATT+CGG 0.414909 8.4:+67036836 MS.gene056831:CDS
ATCGTTGAAGCACTGTATTT+GGG 0.415602 8.4:+67036985 MS.gene056831:CDS
GTCACAGAAGAAACCGGCTT+TGG 0.420176 8.4:+67037630 MS.gene056831:CDS
AGAATCGTTGCGGTCGAGAT+AGG 0.425031 8.4:-67036876 None:intergenic
CTTATATGCCCCTCAGCTCT+TGG 0.426142 8.4:-67037688 None:intergenic
AGAGGAGATTTCGAAGTTTG+AGG 0.427647 8.4:+67037810 MS.gene056831:CDS
ATAGGAAGAGGAGGAAGAGT+AGG 0.429433 8.4:+67037248 MS.gene056831:CDS
ATTTCGAAGTTTGAGGAACT+TGG 0.429880 8.4:+67037817 MS.gene056831:CDS
TGAATCTGATGAAGAATTGA+AGG 0.436478 8.4:+67036913 MS.gene056831:CDS
TTCTCGCGTCTCGGAGGACT+CGG 0.438540 8.4:-67037016 None:intergenic
TGCTGAAGATAAGCGTGCTT+TGG 0.444395 8.4:+67037912 MS.gene056831:CDS
TGTGTCTCTGGCGTTGGTGA+GGG 0.447068 8.4:-67036643 None:intergenic
AACCCTAGACACCACGATAA+CGG 0.451919 8.4:+67036800 MS.gene056831:CDS
TAAAAGGGAGCATAAGGTTA+TGG 0.454765 8.4:+67037960 MS.gene056831:CDS
TTCCGTTATCGTGGTGTCTA+GGG 0.458681 8.4:-67036802 None:intergenic
CAAGAAGAAAAGTTCTGAAC+CGG 0.463458 8.4:+67037471 MS.gene056831:CDS
TGAACCGGTTAGCGAGGCTT+CGG 0.464599 8.4:+67037486 MS.gene056831:CDS
CTATGGTGGTGCACTTAGGC+CGG 0.465336 8.4:+67037711 MS.gene056831:CDS
GTTTGAGTCACAGAAGAAAC+CGG 0.471304 8.4:+67037624 MS.gene056831:CDS
AGCAAAATCTGAGTCTGAAT+CGG 0.473595 8.4:+67037120 MS.gene056831:CDS
GTGAGGGGTTTCGATGGTGG+AGG 0.474321 8.4:-67036627 None:intergenic
ATATTGAACGGCGACGGTGG+CGG 0.475340 8.4:-67036763 None:intergenic
GGAAGCGGCATTGGCCCAAC+CGG 0.475959 8.4:-67037667 None:intergenic
TGCCGAATTTCTTTGGGAGA+TGG 0.477109 8.4:-67036838 None:intergenic
AATTGATGTGAAGAAGGATA+AGG 0.477699 8.4:+67037084 MS.gene056831:CDS
AAATCATCGTTCTCGCGTCT+CGG 0.479944 8.4:-67037025 None:intergenic
GCTTCGGAGGAAATTGAGTT+GGG 0.479948 8.4:+67037502 MS.gene056831:CDS
TTATGAAGAGAAGGCTAAAA+GGG 0.480058 8.4:+67037945 MS.gene056831:CDS
GGCTTCGGAGGAAATTGAGT+TGG 0.486720 8.4:+67037501 MS.gene056831:CDS
CAGAAGAGGAGGATAGGAAG+AGG 0.487316 8.4:+67037236 MS.gene056831:CDS
GGAATCTAAAGAATCTGAAT+CGG 0.492329 8.4:+67037144 MS.gene056831:CDS
TTGGTGAGGGGTTTCGATGG+TGG 0.496087 8.4:-67036630 None:intergenic
CTGATGATGGTTTAAGAAAG+AGG 0.500563 8.4:+67037422 MS.gene056831:CDS
TGCTGAGGCTTTGAAGTTGA+AGG 0.503552 8.4:+67037597 MS.gene056831:CDS
CTGAATCAGAAGAGGAGGAT+AGG 0.507396 8.4:+67037230 MS.gene056831:CDS
TCGTTGGAGACATCGGAGTC+AGG 0.508578 8.4:-67036683 None:intergenic
GCGTTGGTGAGGGGTTTCGA+TGG 0.511920 8.4:-67036633 None:intergenic
TAGTGAGAGTGATAGCGATT+CGG 0.513089 8.4:+67037276 MS.gene056831:CDS
GGTCGTTGTGTCTCTGGCGT+TGG 0.517012 8.4:-67036649 None:intergenic
GAAGGAAGAGTAGTAGAAAG+AGG 0.517669 8.4:+67037323 MS.gene056831:CDS
CACGATAACGGAAATTCAAA+CGG 0.519288 8.4:+67036812 MS.gene056831:CDS
CATATTGGTGGTCAGGATGT+TGG 0.525252 8.4:+67038009 MS.gene056831:CDS
GCAGCGTCATATTGGTGGTC+AGG 0.526877 8.4:+67038002 MS.gene056831:CDS
GCACCAAAAGGATCATGAGT+TGG 0.527290 8.4:-67038033 None:intergenic
ATGATGAAGAACCACCGGTT+GGG 0.528395 8.4:+67037653 MS.gene056831:CDS
TCGTCGTAGGAATCGTAGCT+AGG 0.529874 8.4:-67036728 None:intergenic
TCGTATTAGGAAAGAAAACC+AGG 0.532173 8.4:+67037882 MS.gene056831:CDS
AGACCCACTTCTCCTCTCCT+AGG 0.534139 8.4:-67037781 None:intergenic
AAGAATCTGAATCGGAATTG+AGG 0.537137 8.4:+67037152 MS.gene056831:CDS
GGTGCACTTAGGCCGGGTGA+AGG 0.539632 8.4:+67037718 MS.gene056831:CDS
TATCTTCAGCACTATAAACC+TGG 0.541478 8.4:-67037900 None:intergenic
GTTATGTGATGAGTGGTAGT+AGG 0.542664 8.4:+67037839 MS.gene056831:CDS
ACGGTAACGAGGGCGATCGT+TGG 0.543118 8.4:-67036699 None:intergenic
GGTTCTTCATCATCCAAAGC+CGG 0.544025 8.4:-67037643 None:intergenic
TATGTTTAATTATGAAGAGA+AGG 0.544835 8.4:+67037936 MS.gene056831:CDS
TTGTGTCTCTGGCGTTGGTG+AGG 0.544870 8.4:-67036644 None:intergenic
AACAAGGGAAACGTATTCCT+AGG 0.546038 8.4:+67037764 MS.gene056831:CDS
AGCGGCATTGGCCCAACCGG+TGG 0.547670 8.4:-67037664 None:intergenic
AGAGTAGTAGGAAGAAGAGA+AGG 0.547974 8.4:+67037350 MS.gene056831:CDS
TGCCCCTCAGCTCTTGGAAG+CGG 0.548230 8.4:-67037682 None:intergenic
TCTGAATCTGACTCTGATGA+TGG 0.548510 8.4:+67037409 MS.gene056831:CDS
AAGAGGAGGATAGGAAGAGG+AGG 0.556894 8.4:+67037239 MS.gene056831:CDS
TATGGTGGTGCACTTAGGCC+GGG 0.563708 8.4:+67037712 MS.gene056831:CDS
ATCGAAAGAGGAGAAAGAGA+AGG 0.565595 8.4:+67037305 MS.gene056831:CDS
CTTGTGCAGCGTCATATTGG+TGG 0.565733 8.4:+67037997 MS.gene056831:CDS
GATGATGAAGAACCACCGGT+TGG 0.574897 8.4:+67037652 MS.gene056831:CDS
ATGCCGCTTCCAAGAGCTGA+GGG 0.575379 8.4:+67037679 MS.gene056831:CDS
GGGATATTGAACGGCGACGG+TGG 0.576567 8.4:-67036766 None:intergenic
TGATGTTGATGAGGAGAAGA+TGG 0.578344 8.4:+67037564 MS.gene056831:CDS
AGAAGTGGGTCTTTCTGCAG+AGG 0.579975 8.4:+67037792 MS.gene056831:CDS
ACCGGTTAGCGAGGCTTCGG+AGG 0.580060 8.4:+67037489 MS.gene056831:CDS
TATTCCTAGGAGAGGAGAAG+TGG 0.585399 8.4:+67037777 MS.gene056831:CDS
CGTCGTAGGAATCGTAGCTA+GGG 0.585453 8.4:-67036727 None:intergenic
ATTCGGAAGAAGATCGAAAG+AGG 0.585552 8.4:+67037293 MS.gene056831:CDS
GCTGAGGGGCATATAAGCTA+TGG 0.585758 8.4:+67037694 MS.gene056831:CDS
TTTGGATGATGAAGAACCAC+CGG 0.585914 8.4:+67037648 MS.gene056831:CDS
TAAGCTATGGTGGTGCACTT+AGG 0.587827 8.4:+67037707 MS.gene056831:CDS
AATCGGAATTGAGGAAGAAG+AGG 0.595077 8.4:+67037161 MS.gene056831:CDS
TGAATCTGAATCAGAAGAGG+AGG 0.596676 8.4:+67037225 MS.gene056831:CDS
CGTTTGAATTTCCGTTATCG+TGG 0.597738 8.4:-67036811 None:intergenic
GAAAGAGGAAGCCATCGAGA+CGG 0.599226 8.4:+67037437 MS.gene056831:CDS
ATCTGAATCTGAATCAGAAG+AGG 0.600199 8.4:+67037222 MS.gene056831:CDS
AAGTTCTGAACCGGTTAGCG+AGG 0.600674 8.4:+67037480 MS.gene056831:CDS
GTGTCTCTGGCGTTGGTGAG+GGG 0.600731 8.4:-67036642 None:intergenic
ATCGGAATTGAGGAAGAAGA+GGG 0.601205 8.4:+67037162 MS.gene056831:CDS
AGGGCGATCGTTGGAGACAT+CGG 0.601344 8.4:-67036690 None:intergenic
AATGCCGCTTCCAAGAGCTG+AGG 0.605177 8.4:+67037678 MS.gene056831:CDS
AATCGTAGCTAGGGCTACGA+CGG 0.610159 8.4:-67036718 None:intergenic
AAGAGTATCGCAGATTGAAG+AGG 0.610488 8.4:+67036948 MS.gene056831:CDS
AAAATCTGAGTCTGAATCGG+AGG 0.611446 8.4:+67037123 MS.gene056831:CDS
TCATCGTTCTCGCGTCTCGG+AGG 0.618680 8.4:-67037022 None:intergenic
GTCTGTGTGACGATCGTCGT+AGG 0.619398 8.4:-67036741 None:intergenic
CTAGGGCTACGACGGTAACG+AGG 0.621048 8.4:-67036710 None:intergenic
GGAAGAGTAGTAGAAAGAGG+AGG 0.622035 8.4:+67037326 MS.gene056831:CDS
GAATCTGATGAAGAATTGAA+GGG 0.622377 8.4:+67036914 MS.gene056831:CDS
GATTGAAGAGGCAAAAGATG+AGG 0.629528 8.4:+67036960 MS.gene056831:CDS
CATCGGAGTCAGGTGTGCGG+CGG 0.630078 8.4:-67036673 None:intergenic
TGAGTGGTAGTAGGCATCAG+AGG 0.632893 8.4:+67037848 MS.gene056831:CDS
TCGGAATTGAGGAAGAAGAG+GGG 0.641175 8.4:+67037163 MS.gene056831:CDS
AGGTTATGGCTGATTTGCAG+CGG 0.641591 8.4:+67037974 MS.gene056831:CDS
AGAAATTGATGATGTTGATG+AGG 0.642543 8.4:+67037555 MS.gene056831:CDS
ATTGCGCAATATGTTCAACA+AGG 0.650007 8.4:+67037748 MS.gene056831:CDS
GAGGGGCATATAAGCTATGG+TGG 0.653790 8.4:+67037697 MS.gene056831:CDS
ATTCCTAGGAGAGGAGAAGT+GGG 0.661316 8.4:+67037778 MS.gene056831:CDS
GAACTTGGTTATGTGATGAG+TGG 0.665709 8.4:+67037832 MS.gene056831:CDS
GCAATAGCATCTCCTTCACC+CGG 0.667502 8.4:-67037730 None:intergenic
GGGAAACGTATTCCTAGGAG+AGG 0.668109 8.4:+67037769 MS.gene056831:CDS
TAGGGCTACGACGGTAACGA+GGG 0.682230 8.4:-67036709 None:intergenic
AGACATCGGAGTCAGGTGTG+CGG 0.688990 8.4:-67036676 None:intergenic
GATGGCTGAGATGAATGCTG+AGG 0.692306 8.4:+67037582 MS.gene056831:CDS
AAATTCGGCAATCGTAACAA+CGG 0.692872 8.4:+67036851 MS.gene056831:CDS
TTGCGCAATATGTTCAACAA+GGG 0.696691 8.4:+67037749 MS.gene056831:CDS
CGTTACGCCGAGAATCGTTG+CGG 0.710194 8.4:-67036886 None:intergenic
TGCCGCTTCCAAGAGCTGAG+GGG 0.711878 8.4:+67037680 MS.gene056831:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATGTTTAATTATGAAGAGA+AGG + chr8.4:67037936-67037955 MS.gene056831:CDS 20.0%
!!! ATTTTCTCAAAAATTTCTTC+AGG - chr8.4:67037067-67037086 None:intergenic 20.0%
! AACGATGATTTAGAAGATTA+TGG + chr8.4:67037037-67037056 MS.gene056831:CDS 25.0%
AATTGATGTGAAGAAGGATA+AGG + chr8.4:67037084-67037103 MS.gene056831:CDS 30.0%
ATTATGAAGAGAAGGCTAAA+AGG + chr8.4:67037944-67037963 MS.gene056831:CDS 30.0%
GAATCTGATGAAGAATTGAA+GGG + chr8.4:67036914-67036933 MS.gene056831:CDS 30.0%
GGAATCTAAAGAATCTGAAT+CGG + chr8.4:67037144-67037163 MS.gene056831:CDS 30.0%
TGAATCTGATGAAGAATTGA+AGG + chr8.4:67036913-67036932 MS.gene056831:CDS 30.0%
TGAGAAAATTGATGTGAAGA+AGG + chr8.4:67037078-67037097 MS.gene056831:CDS 30.0%
TTATGAAGAGAAGGCTAAAA+GGG + chr8.4:67037945-67037964 MS.gene056831:CDS 30.0%
!! AGAAATTGATGATGTTGATG+AGG + chr8.4:67037555-67037574 MS.gene056831:CDS 30.0%
AAATTCGGCAATCGTAACAA+CGG + chr8.4:67036851-67036870 MS.gene056831:CDS 35.0%
AACCATCTCCCAAAGAAATT+CGG + chr8.4:67036836-67036855 MS.gene056831:CDS 35.0%
AAGAATCTGAATCGGAATTG+AGG + chr8.4:67037152-67037171 MS.gene056831:CDS 35.0%
AGCAAAATCTGAGTCTGAAT+CGG + chr8.4:67037120-67037139 MS.gene056831:CDS 35.0%
ATCTGAATCTGAATCAGAAG+AGG + chr8.4:67037222-67037241 MS.gene056831:CDS 35.0%
ATTGCGCAATATGTTCAACA+AGG + chr8.4:67037748-67037767 MS.gene056831:CDS 35.0%
ATTTCGAAGTTTGAGGAACT+TGG + chr8.4:67037817-67037836 MS.gene056831:CDS 35.0%
GGATGAATGCAATTCGTATT+AGG + chr8.4:67037869-67037888 MS.gene056831:CDS 35.0%
TACGATTGCCGAATTTCTTT+GGG - chr8.4:67036847-67036866 None:intergenic 35.0%
TATCTTCAGCACTATAAACC+TGG - chr8.4:67037903-67037922 None:intergenic 35.0%
TCGTATTAGGAAAGAAAACC+AGG + chr8.4:67037882-67037901 MS.gene056831:CDS 35.0%
TTACGATTGCCGAATTTCTT+TGG - chr8.4:67036848-67036867 None:intergenic 35.0%
TTGCGCAATATGTTCAACAA+GGG + chr8.4:67037749-67037768 MS.gene056831:CDS 35.0%
! TAAAAGGGAGCATAAGGTTA+TGG + chr8.4:67037960-67037979 MS.gene056831:CDS 35.0%
!! AATCGTTGAAGCACTGTATT+TGG + chr8.4:67036984-67037003 MS.gene056831:CDS 35.0%
!! AATTGAGTTGGGTTCTGATT+CGG + chr8.4:67037513-67037532 MS.gene056831:CDS 35.0%
!! ATCGTTGAAGCACTGTATTT+GGG + chr8.4:67036985-67037004 MS.gene056831:CDS 35.0%
!! CAAGAAGAAAAGTTCTGAAC+CGG + chr8.4:67037471-67037490 MS.gene056831:CDS 35.0%
!! CACGATAACGGAAATTCAAA+CGG + chr8.4:67036812-67036831 MS.gene056831:CDS 35.0%
!! CTGATGATGGTTTAAGAAAG+AGG + chr8.4:67037422-67037441 MS.gene056831:CDS 35.0%
AAAATCTGAGTCTGAATCGG+AGG + chr8.4:67037123-67037142 MS.gene056831:CDS 40.0%
AACAAGGGAAACGTATTCCT+AGG + chr8.4:67037764-67037783 MS.gene056831:CDS 40.0%
AATCGGAATTGAGGAAGAAG+AGG + chr8.4:67037161-67037180 MS.gene056831:CDS 40.0%
AGAGGAGATTTCGAAGTTTG+AGG + chr8.4:67037810-67037829 MS.gene056831:CDS 40.0%
AGAGTAGTAGGAAGAAGAGA+AGG + chr8.4:67037350-67037369 MS.gene056831:CDS 40.0%
ATCGAAAGAGGAGAAAGAGA+AGG + chr8.4:67037305-67037324 MS.gene056831:CDS 40.0%
ATCGGAATTGAGGAAGAAGA+GGG + chr8.4:67037162-67037181 MS.gene056831:CDS 40.0%
ATTCGGAAGAAGATCGAAAG+AGG + chr8.4:67037293-67037312 MS.gene056831:CDS 40.0%
CGTTTGAATTTCCGTTATCG+TGG - chr8.4:67036814-67036833 None:intergenic 40.0%
GAACTTGGTTATGTGATGAG+TGG + chr8.4:67037832-67037851 MS.gene056831:CDS 40.0%
GAAGGAAGAGTAGTAGAAAG+AGG + chr8.4:67037323-67037342 MS.gene056831:CDS 40.0%
GATTGAAGAGGCAAAAGATG+AGG + chr8.4:67036960-67036979 MS.gene056831:CDS 40.0%
GTTATGTGATGAGTGGTAGT+AGG + chr8.4:67037839-67037858 MS.gene056831:CDS 40.0%
GTTTGAGTCACAGAAGAAAC+CGG + chr8.4:67037624-67037643 MS.gene056831:CDS 40.0%
TCTGAATCTGACTCTGATGA+TGG + chr8.4:67037409-67037428 MS.gene056831:CDS 40.0%
TGAATCTGAATCAGAAGAGG+AGG + chr8.4:67037225-67037244 MS.gene056831:CDS 40.0%
TTTGGATGATGAAGAACCAC+CGG + chr8.4:67037648-67037667 MS.gene056831:CDS 40.0%
! GAACCATCTTTTGCACCAAA+AGG - chr8.4:67038048-67038067 None:intergenic 40.0%
! TAGTGAGAGTGATAGCGATT+CGG + chr8.4:67037276-67037295 MS.gene056831:CDS 40.0%
! TGATGTTGATGAGGAGAAGA+TGG + chr8.4:67037564-67037583 MS.gene056831:CDS 40.0%
!! AAGAGTATCGCAGATTGAAG+AGG + chr8.4:67036948-67036967 MS.gene056831:CDS 40.0%
!! GATCCTTTTGGTGCAAAAGA+TGG + chr8.4:67038042-67038061 MS.gene056831:CDS 40.0%
AAATCATCGTTCTCGCGTCT+CGG - chr8.4:67037028-67037047 None:intergenic 45.0%
AACCCTAGACACCACGATAA+CGG + chr8.4:67036800-67036819 MS.gene056831:CDS 45.0%
ATAGGAAGAGGAGGAAGAGT+AGG + chr8.4:67037248-67037267 MS.gene056831:CDS 45.0%
ATTCCTAGGAGAGGAGAAGT+GGG + chr8.4:67037778-67037797 MS.gene056831:CDS 45.0%
CTGAATCAGAAGAGGAGGAT+AGG + chr8.4:67037230-67037249 MS.gene056831:CDS 45.0%
GAAAGAGGAGGAAGAGTAGT+AGG + chr8.4:67037338-67037357 MS.gene056831:CDS 45.0%
GCACCAAAAGGATCATGAGT+TGG - chr8.4:67038036-67038055 None:intergenic 45.0%
GCTTCGGAGGAAATTGAGTT+GGG + chr8.4:67037502-67037521 MS.gene056831:CDS 45.0%
GGAAGAGTAGTAGAAAGAGG+AGG + chr8.4:67037326-67037345 MS.gene056831:CDS 45.0%
GGTTCTTCATCATCCAAAGC+CGG - chr8.4:67037646-67037665 None:intergenic 45.0%
TATTCCTAGGAGAGGAGAAG+TGG + chr8.4:67037777-67037796 MS.gene056831:CDS 45.0%
TCGGAATTGAGGAAGAAGAG+GGG + chr8.4:67037163-67037182 MS.gene056831:CDS 45.0%
TGCTGAAGATAAGCGTGCTT+TGG + chr8.4:67037912-67037931 MS.gene056831:CDS 45.0%
TTCCGTTATCGTGGTGTCTA+GGG - chr8.4:67036805-67036824 None:intergenic 45.0%
TTTCCGTTATCGTGGTGTCT+AGG - chr8.4:67036806-67036825 None:intergenic 45.0%
! ATGATGAAGAACCACCGGTT+GGG + chr8.4:67037653-67037672 MS.gene056831:CDS 45.0%
! CATATTGGTGGTCAGGATGT+TGG + chr8.4:67038009-67038028 MS.gene056831:CDS 45.0%
! CTTTTTCTACTCCGTCTCGA+TGG - chr8.4:67037451-67037470 None:intergenic 45.0%
! GAAGGCTAAAAGGGAGCATA+AGG + chr8.4:67037954-67037973 MS.gene056831:CDS 45.0%
! GGTCCAACTCATGATCCTTT+TGG + chr8.4:67038030-67038049 MS.gene056831:CDS 45.0%
! TAAGCTATGGTGGTGCACTT+AGG + chr8.4:67037707-67037726 MS.gene056831:CDS 45.0%
! TATCGTGGTGTCTAGGGTTT+CGG - chr8.4:67036799-67036818 None:intergenic 45.0%
! TGCCGAATTTCTTTGGGAGA+TGG - chr8.4:67036841-67036860 None:intergenic 45.0%
!! AGGTTATGGCTGATTTGCAG+CGG + chr8.4:67037974-67037993 MS.gene056831:CDS 45.0%
!! GGTTTTCGGGGGATATTGAA+CGG - chr8.4:67036778-67036797 None:intergenic 45.0%
!! GTGTCTAGGGTTTCGGTTTT+CGG - chr8.4:67036792-67036811 None:intergenic 45.0%
!! TGCTGAGGCTTTGAAGTTGA+AGG + chr8.4:67037597-67037616 MS.gene056831:CDS 45.0%
!! TGTCTAGGGTTTCGGTTTTC+GGG - chr8.4:67036791-67036810 None:intergenic 45.0%
AAGAGGAGGATAGGAAGAGG+AGG + chr8.4:67037239-67037258 MS.gene056831:CDS 50.0%
AATCGTAGCTAGGGCTACGA+CGG - chr8.4:67036721-67036740 None:intergenic 50.0%
AGAAGTGGGTCTTTCTGCAG+AGG + chr8.4:67037792-67037811 MS.gene056831:CDS 50.0%
AGAATCGTTGCGGTCGAGAT+AGG - chr8.4:67036879-67036898 None:intergenic 50.0%
ATCTCGACCGCAACGATTCT+CGG + chr8.4:67036879-67036898 MS.gene056831:CDS 50.0%
CAGAAGAGGAGGATAGGAAG+AGG + chr8.4:67037236-67037255 MS.gene056831:CDS 50.0%
CGTCGTAGGAATCGTAGCTA+GGG - chr8.4:67036730-67036749 None:intergenic 50.0%
CTTATATGCCCCTCAGCTCT+TGG - chr8.4:67037691-67037710 None:intergenic 50.0%
CTTGTGCAGCGTCATATTGG+TGG + chr8.4:67037997-67038016 MS.gene056831:CDS 50.0%
GAAAGAGGAAGCCATCGAGA+CGG + chr8.4:67037437-67037456 MS.gene056831:CDS 50.0%
GATGATGAAGAACCACCGGT+TGG + chr8.4:67037652-67037671 MS.gene056831:CDS 50.0%
GATGGCTGAGATGAATGCTG+AGG + chr8.4:67037582-67037601 MS.gene056831:CDS 50.0%
GCAATAGCATCTCCTTCACC+CGG - chr8.4:67037733-67037752 None:intergenic 50.0%
GGCTTCGGAGGAAATTGAGT+TGG + chr8.4:67037501-67037520 MS.gene056831:CDS 50.0%
GGGAAACGTATTCCTAGGAG+AGG + chr8.4:67037769-67037788 MS.gene056831:CDS 50.0%
TCGTCGTAGGAATCGTAGCT+AGG - chr8.4:67036731-67036750 None:intergenic 50.0%
TGAGTGGTAGTAGGCATCAG+AGG + chr8.4:67037848-67037867 MS.gene056831:CDS 50.0%
! GAGGGGCATATAAGCTATGG+TGG + chr8.4:67037697-67037716 MS.gene056831:CDS 50.0%
! GCTGAGGGGCATATAAGCTA+TGG + chr8.4:67037694-67037713 MS.gene056831:CDS 50.0%
! GTCACAGAAGAAACCGGCTT+TGG + chr8.4:67037630-67037649 MS.gene056831:CDS 50.0%
!! AAGTTCTGAACCGGTTAGCG+AGG + chr8.4:67037480-67037499 MS.gene056831:CDS 50.0%
!! GTCTAGGGTTTCGGTTTTCG+GGG - chr8.4:67036790-67036809 None:intergenic 50.0%
!! TCTAGGGTTTCGGTTTTCGG+GGG - chr8.4:67036789-67036808 None:intergenic 50.0%
AGACATCGGAGTCAGGTGTG+CGG - chr8.4:67036679-67036698 None:intergenic 55.0%
AGACCCACTTCTCCTCTCCT+AGG - chr8.4:67037784-67037803 None:intergenic 55.0%
AGGGCGATCGTTGGAGACAT+CGG - chr8.4:67036693-67036712 None:intergenic 55.0%
ATATTGAACGGCGACGGTGG+CGG - chr8.4:67036766-67036785 None:intergenic 55.0%
CGGCTTGTGCAGCGTCATAT+TGG + chr8.4:67037994-67038013 MS.gene056831:CDS 55.0%
CGTTACGCCGAGAATCGTTG+CGG - chr8.4:67036889-67036908 None:intergenic 55.0%
GTCTGTGTGACGATCGTCGT+AGG - chr8.4:67036744-67036763 None:intergenic 55.0%
TAGGGCTACGACGGTAACGA+GGG - chr8.4:67036712-67036731 None:intergenic 55.0%
TCAGCTCTTGGAAGCGGCAT+TGG - chr8.4:67037679-67037698 None:intergenic 55.0%
TCGTTGGAGACATCGGAGTC+AGG - chr8.4:67036686-67036705 None:intergenic 55.0%
TGAACCGGTTAGCGAGGCTT+CGG + chr8.4:67037486-67037505 MS.gene056831:CDS 55.0%
TTGGTGAGGGGTTTCGATGG+TGG - chr8.4:67036633-67036652 None:intergenic 55.0%
! AATGCCGCTTCCAAGAGCTG+AGG + chr8.4:67037678-67037697 MS.gene056831:CDS 55.0%
! ATGCCGCTTCCAAGAGCTGA+GGG + chr8.4:67037679-67037698 MS.gene056831:CDS 55.0%
! CTATGGTGGTGCACTTAGGC+CGG + chr8.4:67037711-67037730 MS.gene056831:CDS 55.0%
! GCAGCGTCATATTGGTGGTC+AGG + chr8.4:67038002-67038021 MS.gene056831:CDS 55.0%
! TATGGTGGTGCACTTAGGCC+GGG + chr8.4:67037712-67037731 MS.gene056831:CDS 55.0%
!! TGTGTCTCTGGCGTTGGTGA+GGG - chr8.4:67036646-67036665 None:intergenic 55.0%
!! TTGTGTCTCTGGCGTTGGTG+AGG - chr8.4:67036647-67036666 None:intergenic 55.0%
ACGGTAACGAGGGCGATCGT+TGG - chr8.4:67036702-67036721 None:intergenic 60.0%
CGGGGGATATTGAACGGCGA+CGG - chr8.4:67036772-67036791 None:intergenic 60.0%
CTAGGGCTACGACGGTAACG+AGG - chr8.4:67036713-67036732 None:intergenic 60.0%
GGGATATTGAACGGCGACGG+TGG - chr8.4:67036769-67036788 None:intergenic 60.0%
GGTCGTTGTGTCTCTGGCGT+TGG - chr8.4:67036652-67036671 None:intergenic 60.0%
TCATCGTTCTCGCGTCTCGG+AGG - chr8.4:67037025-67037044 None:intergenic 60.0%
TCCTCCGAAGCCTCGCTAAC+CGG - chr8.4:67037493-67037512 None:intergenic 60.0%
TGCCCCTCAGCTCTTGGAAG+CGG - chr8.4:67037685-67037704 None:intergenic 60.0%
TTCTCGCGTCTCGGAGGACT+CGG - chr8.4:67037019-67037038 None:intergenic 60.0%
! GCGTTGGTGAGGGGTTTCGA+TGG - chr8.4:67036636-67036655 None:intergenic 60.0%
! GTGAGGGGTTTCGATGGTGG+AGG - chr8.4:67036630-67036649 None:intergenic 60.0%
! TGCCGCTTCCAAGAGCTGAG+GGG + chr8.4:67037680-67037699 MS.gene056831:CDS 60.0%
!! GTGTCTCTGGCGTTGGTGAG+GGG - chr8.4:67036645-67036664 None:intergenic 60.0%
ACCGGTTAGCGAGGCTTCGG+AGG + chr8.4:67037489-67037508 MS.gene056831:CDS 65.0%
CATCGGAGTCAGGTGTGCGG+CGG - chr8.4:67036676-67036695 None:intergenic 65.0%
GGTGCACTTAGGCCGGGTGA+AGG + chr8.4:67037718-67037737 MS.gene056831:CDS 65.0%
!! GGAAGCGGCATTGGCCCAAC+CGG - chr8.4:67037670-67037689 None:intergenic 65.0%
GGCGGCGGTCGTTGTGTCTC+TGG - chr8.4:67036658-67036677 None:intergenic 70.0%
!! AGCGGCATTGGCCCAACCGG+TGG - chr8.4:67037667-67037686 None:intergenic 70.0%
CGGAGTCAGGTGTGCGGCGG+CGG - chr8.4:67036673-67036692 None:intergenic 75.0%


Chromosome Type Strat End Strand Name
chr8.4 gene 67036614 67038074 67036614 ID=MS.gene056831
chr8.4 mRNA 67036614 67038074 67036614 ID=MS.gene056831.t1;Parent=MS.gene056831
chr8.4 exon 67036614 67038074 67036614 ID=MS.gene056831.t1.exon1;Parent=MS.gene056831.t1
chr8.4 CDS 67036614 67038074 67036614 ID=cds.MS.gene056831.t1;Parent=MS.gene056831.t1
Gene Sequence

>MS.gene056831

ATGGCGAGACTCTCCTCCACCATCGAAACCCCTCACCAACGCCAGAGACACAACGACCGCCGCCGCACACCTGACTCCGATGTCTCCAACGATCGCCCTCGTTACCGTCGTAGCCCTAGCTACGATTCCTACGACGATCGTCACACAGACCGCCACCGTCGCCGTTCAATATCCCCCGAAAACCGAAACCCTAGACACCACGATAACGGAAATTCAAACGGCAACCATCTCCCAAAGAAATTCGGCAATCGTAACAACGGTTCCTATCTCGACCGCAACGATTCTCGGCGTAACGAGTCTGAATCTGATGAAGAATTGAAGGGATTGAGTTACGAAGAGTATCGCAGATTGAAGAGGCAAAAGATGAGGAAATCGTTGAAGCACTGTATTTGGGATGTTACGCCGAGTCCTCCGAGACGCGAGAACGATGATTTAGAAGATTATGGAAAACCTGAAGAAATTTTTGAGAAAATTGATGTGAAGAAGGATAAGGAGATTAAACTGAAAGCAAAATCTGAGTCTGAATCGGAGGAATCTAAAGAATCTGAATCGGAATTGAGGAAGAAGAGGGGAAAAAGTTCTAAGAAATCACGCGAAAGCGATAGTGAATCTGAATCTGAATCAGAAGAGGAGGATAGGAAGAGGAGGAAGAGTAGGAAGTATAGTGAGAGTGATAGCGATTCGGAAGAAGATCGAAAGAGGAGAAAGAGAAGGAAGAGTAGTAGAAAGAGGAGGAAGAGTAGTAGGAAGAAGAGAAGGTATAGTGATTCAGAAGAGAGTGAAAGTGATAATGAGTCTGAATCTGACTCTGATGATGGTTTAAGAAAGAGGAAGCCATCGAGACGGAGTAGAAAAAGCAAGAAGAAAAGTTCTGAACCGGTTAGCGAGGCTTCGGAGGAAATTGAGTTGGGTTCTGATTCGGCTGTTGCGAAGAGTAATGAAGAAATTGATGATGTTGATGAGGAGAAGATGGCTGAGATGAATGCTGAGGCTTTGAAGTTGAAGGAATTGTTTGAGTCACAGAAGAAACCGGCTTTGGATGATGAAGAACCACCGGTTGGGCCAATGCCGCTTCCAAGAGCTGAGGGGCATATAAGCTATGGTGGTGCACTTAGGCCGGGTGAAGGAGATGCTATTGCGCAATATGTTCAACAAGGGAAACGTATTCCTAGGAGAGGAGAAGTGGGTCTTTCTGCAGAGGAGATTTCGAAGTTTGAGGAACTTGGTTATGTGATGAGTGGTAGTAGGCATCAGAGGATGAATGCAATTCGTATTAGGAAAGAAAACCAGGTTTATAGTGCTGAAGATAAGCGTGCTTTGGCTATGTTTAATTATGAAGAGAAGGCTAAAAGGGAGCATAAGGTTATGGCTGATTTGCAGCGGCTTGTGCAGCGTCATATTGGTGGTCAGGATGTTGGTCCAACTCATGATCCTTTTGGTGCAAAAGATGGTTCTGATTGA

Protein sequence

>MS.gene056831.t1

MARLSSTIETPHQRQRHNDRRRTPDSDVSNDRPRYRRSPSYDSYDDRHTDRHRRRSISPENRNPRHHDNGNSNGNHLPKKFGNRNNGSYLDRNDSRRNESESDEELKGLSYEEYRRLKRQKMRKSLKHCIWDVTPSPPRRENDDLEDYGKPEEIFEKIDVKKDKEIKLKAKSESESEESKESESELRKKRGKSSKKSRESDSESESESEEEDRKRRKSRKYSESDSDSEEDRKRRKRRKSSRKRRKSSRKKRRYSDSEESESDNESESDSDDGLRKRKPSRRSRKSKKKSSEPVSEASEEIELGSDSAVAKSNEEIDDVDEEKMAEMNAEALKLKELFESQKKPALDDEEPPVGPMPLPRAEGHISYGGALRPGEGDAIAQYVQQGKRIPRRGEVGLSAEEISKFEELGYVMSGSRHQRMNAIRIRKENQVYSAEDKRALAMFNYEEKAKREHKVMADLQRLVQRHIGGQDVGPTHDPFGAKDGSD