Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene54814.t1 | KEH42495.1 | 99.5 | 216 | 1 | 0 | 1 | 216 | 462 | 677 | 1.70E-81 | 312.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene54814.t1 | Q0WTY4 | 75.9 | 220 | 43 | 1 | 5 | 214 | 1 | 220 | 1.7e-58 | 227.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene54814.t1 | A0A072VWM9 | 99.5 | 216 | 1 | 0 | 1 | 216 | 462 | 677 | 1.2e-81 | 312.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049580 | MS.gene54814 | 0.815328 | 9.78E-52 | -1.69E-46 |
| MS.gene051903 | MS.gene54814 | 0.810003 | 1.43E-50 | -1.69E-46 |
| MS.gene055555 | MS.gene54814 | 0.827103 | 1.88E-54 | -1.69E-46 |
| MS.gene057705 | MS.gene54814 | 0.809428 | 1.90E-50 | -1.69E-46 |
| MS.gene058074 | MS.gene54814 | 0.810012 | 1.42E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene54814.t1 | MTR_1g069715 | 99.537 | 216 | 1 | 0 | 1 | 216 | 462 | 677 | 6.06e-151 | 435 |
| MS.gene54814.t1 | MTR_7g097170 | 81.132 | 212 | 40 | 0 | 5 | 216 | 1 | 212 | 1.87e-113 | 323 |
| MS.gene54814.t1 | MTR_2g047875 | 73.832 | 214 | 52 | 1 | 5 | 214 | 1 | 214 | 2.30e-109 | 313 |
| MS.gene54814.t1 | MTR_2g041190 | 42.202 | 218 | 116 | 2 | 7 | 214 | 4 | 221 | 2.11e-41 | 140 |
| MS.gene54814.t1 | MTR_8g019700 | 46.023 | 176 | 95 | 0 | 7 | 182 | 4 | 179 | 4.39e-40 | 137 |
| MS.gene54814.t1 | MTR_4g057565 | 31.892 | 185 | 126 | 0 | 1 | 185 | 1 | 185 | 2.58e-20 | 85.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene54814.t1 | AT1G03950 | 78.571 | 210 | 45 | 0 | 5 | 214 | 1 | 210 | 1.41e-121 | 343 |
| MS.gene54814.t1 | AT5G44560 | 75.000 | 220 | 45 | 1 | 5 | 214 | 1 | 220 | 1.25e-115 | 329 |
| MS.gene54814.t1 | AT5G44560 | 76.000 | 200 | 38 | 1 | 25 | 214 | 1 | 200 | 3.77e-105 | 301 |
| MS.gene54814.t1 | AT5G44560 | 80.899 | 178 | 34 | 0 | 5 | 182 | 1 | 178 | 4.50e-103 | 296 |
| MS.gene54814.t1 | AT5G44560 | 76.000 | 150 | 36 | 0 | 5 | 154 | 1 | 150 | 7.21e-79 | 233 |
| MS.gene54814.t1 | AT2G06530 | 42.727 | 220 | 115 | 2 | 6 | 214 | 4 | 223 | 4.08e-43 | 145 |
| MS.gene54814.t1 | AT2G06530 | 42.424 | 198 | 103 | 2 | 28 | 214 | 5 | 202 | 2.70e-35 | 124 |
| MS.gene54814.t1 | AT5G22950 | 28.384 | 229 | 150 | 2 | 1 | 215 | 1 | 229 | 3.73e-19 | 82.8 |
Find 38 sgRNAs with CRISPR-Local
Find 219 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTGGAACTCTTGAATAATTT+TGG | 0.113072 | 1.3:-49263507 | None:intergenic |
| CCATTTGTGCTGATTGTTTC+TGG | 0.121554 | 1.3:-49263526 | None:intergenic |
| CTTCTCGATGTCATCAATTT+CGG | 0.344181 | 1.3:-49265561 | None:intergenic |
| GGCAATGGAAGCTATGAATA+AGG | 0.394968 | 1.3:+49262948 | MS.gene54814:CDS |
| TTTGAGCTCGACTACCTTGA+AGG | 0.406647 | 1.3:-49262749 | None:intergenic |
| CAACAAATTGCTAACCTTCA+AGG | 0.417491 | 1.3:+49262735 | MS.gene54814:CDS |
| CGGCGTGGATGTTGCTTCAC+AGG | 0.421005 | 1.3:+49265008 | MS.gene54814:CDS |
| CCAGGCAGTTGGTTAGGCTT+AGG | 0.424613 | 1.3:+49262712 | MS.gene54814:CDS |
| TGATGACATCGAGAAGCGTT+TGG | 0.440202 | 1.3:+49265568 | MS.gene54814:CDS |
| CAGAGAGAGTAAACGTGAAA+TGG | 0.451306 | 1.3:+49261998 | MS.gene54814:CDS |
| CCAGAAACAATCAGCACAAA+TGG | 0.451902 | 1.3:+49263526 | MS.gene54814:CDS |
| CGGCATGAAAGGTGCTAGTA+AGG | 0.457818 | 1.3:+49262927 | MS.gene54814:CDS |
| TACATTACCTCTAGTGGCAT+TGG | 0.462651 | 1.3:-49262021 | None:intergenic |
| TCTATTTCTGCCGGCATGAA+AGG | 0.465107 | 1.3:+49262916 | MS.gene54814:CDS |
| TGGCAGGTACTCGATGAAAT+CGG | 0.471009 | 1.3:+49264988 | MS.gene54814:intron |
| TCCAAGAAACCTAAGCCAAA+AGG | 0.480325 | 1.3:+49261824 | MS.gene54814:CDS |
| GACAGAAGATCTGACAAATC+AGG | 0.492127 | 1.3:+49263702 | MS.gene54814:CDS |
| TATTAGCCAGGCAGTTGGTT+AGG | 0.498748 | 1.3:+49262706 | MS.gene54814:CDS |
| GATAAAGAAAACTGCTAAGA+CGG | 0.504385 | 1.3:+49262303 | MS.gene54814:CDS |
| GCTCAGTCTTCTATTTCTGC+CGG | 0.508543 | 1.3:+49262907 | MS.gene54814:CDS |
| GAAAATTACATTACCTCTAG+TGG | 0.527579 | 1.3:-49262027 | None:intergenic |
| AACTGCTAAGACGGGAAATG+AGG | 0.530892 | 1.3:+49262312 | MS.gene54814:CDS |
| CAGTTATCAGCAGCTCCAAA+AGG | 0.534197 | 1.3:+49265137 | MS.gene54814:intron |
| ATAAAGAAAACTGCTAAGAC+GGG | 0.538319 | 1.3:+49262304 | MS.gene54814:CDS |
| AGATGCCATCGATGATGTCT+TGG | 0.557065 | 1.3:+49263657 | MS.gene54814:CDS |
| TAAAATATTAGCCAGGCAGT+TGG | 0.568904 | 1.3:+49262701 | MS.gene54814:CDS |
| TGACATCGAGAAGCGTTTGG+CGG | 0.572824 | 1.3:+49265571 | MS.gene54814:CDS |
| AGAATACTGAAAATGTCAGC+AGG | 0.574074 | 1.3:+49265174 | MS.gene54814:CDS |
| CTGCGACTAAAATATTAGCC+AGG | 0.584824 | 1.3:+49262694 | MS.gene54814:CDS |
| GAAAGGTGCTAGTAAGGCAA+TGG | 0.588411 | 1.3:+49262933 | MS.gene54814:CDS |
| CTTACTAGCACCTTTCATGC+CGG | 0.602682 | 1.3:-49262926 | None:intergenic |
| CCTAAGCCTAACCAACTGCC+TGG | 0.602720 | 1.3:-49262712 | None:intergenic |
| GGTAGTCGAGCTCAAATGAG+AGG | 0.622813 | 1.3:+49262756 | MS.gene54814:CDS |
| ATTATCCAAGACATCATCGA+TGG | 0.636937 | 1.3:-49263662 | None:intergenic |
| GAAATGGCCAATGCCACTAG+AGG | 0.655907 | 1.3:+49262014 | MS.gene54814:CDS |
| TGATGTCTTGGATAATGATG+AGG | 0.669181 | 1.3:+49263669 | MS.gene54814:CDS |
| AGGCATAGCAACTCACACAC+AGG | 0.671175 | 1.3:+49262776 | MS.gene54814:CDS |
| GGTACTCGATGAAATCGGCG+TGG | 0.702596 | 1.3:+49264993 | MS.gene54814:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAATTAATTAATACAGTAA+GGG | - | chr1.3:49262128-49262147 | None:intergenic | 10.0% |
| !! | TATAATTAATTAATACAGTA+AGG | - | chr1.3:49262129-49262148 | None:intergenic | 10.0% |
| !! | AAATTACAAAAAACAATTGA+TGG | + | chr1.3:49264948-49264967 | MS.gene54814:intron | 15.0% |
| !! | TTAAAGCTAAGATTTAAATT+TGG | - | chr1.3:49263947-49263966 | None:intergenic | 15.0% |
| !! | TTTAATTGGATGTTTATTAA+TGG | + | chr1.3:49263159-49263178 | MS.gene54814:intron | 15.0% |
| !!! | AAATACTTTAAATTTTTGGT+TGG | + | chr1.3:49264812-49264831 | MS.gene54814:intron | 15.0% |
| !!! | TATTAGCAAATTACAATTTT+AGG | - | chr1.3:49264567-49264586 | None:intergenic | 15.0% |
| !!! | TGGAAATTTTATTTACTTTT+TGG | + | chr1.3:49264968-49264987 | MS.gene54814:intron | 15.0% |
| !! | ACATGAGAAATTTAAACAAT+AGG | - | chr1.3:49262250-49262269 | None:intergenic | 20.0% |
| !! | ATTAATTATATGTATTCCAC+AGG | + | chr1.3:49262139-49262158 | MS.gene54814:intron | 20.0% |
| !! | GAAATCAATAGAAAATTACA+TGG | + | chr1.3:49264045-49264064 | MS.gene54814:intron | 20.0% |
| !! | GTTTGATATCAAAATAGTTA+AGG | - | chr1.3:49264740-49264759 | None:intergenic | 20.0% |
| !! | TAAAAGGAAATTAATGCATT+GGG | + | chr1.3:49263309-49263328 | MS.gene54814:intron | 20.0% |
| !! | TGGTTAATTAATTTCTTACT+TGG | + | chr1.3:49263839-49263858 | MS.gene54814:intron | 20.0% |
| !!! | AATATACTTCTAAAAACAAG+TGG | + | chr1.3:49264583-49264602 | MS.gene54814:intron | 20.0% |
| !!! | AATTTTATTTACTTTTTGGC+AGG | + | chr1.3:49264972-49264991 | MS.gene54814:intron | 20.0% |
| !!! | ACTTGATTTGCTTAAAAATT+AGG | - | chr1.3:49264783-49264802 | None:intergenic | 20.0% |
| !!! | AGTTGGTTTTATTTTAGTAT+TGG | + | chr1.3:49263038-49263057 | MS.gene54814:intron | 20.0% |
| !!! | ATATACTTCTAAAAACAAGT+GGG | + | chr1.3:49264584-49264603 | MS.gene54814:intron | 20.0% |
| !!! | CTAAACTTCTTTAAAAACTA+AGG | - | chr1.3:49265245-49265264 | None:intergenic | 20.0% |
| !!! | GAGATAAAGTTGATATTTAT+AGG | + | chr1.3:49263217-49263236 | MS.gene54814:intron | 20.0% |
| !!! | TGTTTGTTCTATATGATTTT+AGG | + | chr1.3:49264178-49264197 | MS.gene54814:intron | 20.0% |
| !!! | TTCTCATGTTTTTTATGATT+AGG | + | chr1.3:49262261-49262280 | MS.gene54814:intron | 20.0% |
| ! | AAGAAATTATTTGCAGCAAA+TGG | + | chr1.3:49263469-49263488 | MS.gene54814:intron | 25.0% |
| ! | AAGGAAATACTATGGTTTAT+AGG | - | chr1.3:49264071-49264090 | None:intergenic | 25.0% |
| ! | AATAAAGCGAAATTGAATGA+CGG | - | chr1.3:49261920-49261939 | None:intergenic | 25.0% |
| ! | AATAAGCTGAAAACAACTTA+TGG | + | chr1.3:49262517-49262536 | MS.gene54814:intron | 25.0% |
| ! | AGTCTGTTTAGAAAAGTTTA+CGG | - | chr1.3:49262561-49262580 | None:intergenic | 25.0% |
| ! | CTAAAAGGAAATTAATGCAT+TGG | + | chr1.3:49263308-49263327 | MS.gene54814:intron | 25.0% |
| ! | TAAGTTGTGAAGAATTTACT+TGG | + | chr1.3:49265408-49265427 | MS.gene54814:intron | 25.0% |
| ! | TACAATAGCAAGATGATATT+TGG | + | chr1.3:49263069-49263088 | MS.gene54814:intron | 25.0% |
| ! | TGATATTTATAGGTTATTGC+CGG | + | chr1.3:49263227-49263246 | MS.gene54814:intron | 25.0% |
| ! | TTCTTACTTGGTTATTTACA+TGG | + | chr1.3:49263851-49263870 | MS.gene54814:intron | 25.0% |
| ! | TTGATTATATTTGATGTCCA+TGG | + | chr1.3:49262992-49263011 | MS.gene54814:intron | 25.0% |
| ! | TTGGATGTTTATTAATGGAA+TGG | + | chr1.3:49263164-49263183 | MS.gene54814:intron | 25.0% |
| ! | TTTCCTTCTTAAGAGTTATA+AGG | + | chr1.3:49264084-49264103 | MS.gene54814:intron | 25.0% |
| ! | TTTCTTTAAATTCAGCACAA+CGG | - | chr1.3:49263455-49263474 | None:intergenic | 25.0% |
| !! | ACATAGAAGCAGTAATTTTT+GGG | - | chr1.3:49264313-49264332 | None:intergenic | 25.0% |
| !! | ACTTCTTTAAAAACTAAGGA+TGG | - | chr1.3:49265241-49265260 | None:intergenic | 25.0% |
| !! | ATAGAAAGTAAGAGTATAGA+TGG | + | chr1.3:49264880-49264899 | MS.gene54814:intron | 25.0% |
| !! | TACATAGAAGCAGTAATTTT+TGG | - | chr1.3:49264314-49264333 | None:intergenic | 25.0% |
| !! | TAGAAAGTAAGAGTATAGAT+GGG | + | chr1.3:49264881-49264900 | MS.gene54814:intron | 25.0% |
| !!! | AAAATGAAGCTTTTGTTTTG+CGG | + | chr1.3:49263114-49263133 | MS.gene54814:intron | 25.0% |
| !!! | AACTTTCTTTAAGACATAGA+GGG | - | chr1.3:49265333-49265352 | None:intergenic | 25.0% |
| !!! | AATTTTGGTACTTTGTTTTC+AGG | + | chr1.3:49262831-49262850 | MS.gene54814:intron | 25.0% |
| !!! | ACAAATTGGTGCATTTTAAT+TGG | + | chr1.3:49263145-49263164 | MS.gene54814:intron | 25.0% |
| !!! | ATTTTGGTACTTTGTTTTCA+GGG | + | chr1.3:49262832-49262851 | MS.gene54814:intron | 25.0% |
| !!! | ATTTTTTCTAAAGAACACGT+GGG | + | chr1.3:49264451-49264470 | MS.gene54814:intron | 25.0% |
| !!! | TATTTTTTCTAAAGAACACG+TGG | + | chr1.3:49264450-49264469 | MS.gene54814:intron | 25.0% |
| !!! | TTTGTTTTGATACTTCCTTT+TGG | - | chr1.3:49265155-49265174 | None:intergenic | 25.0% |
| AAGTTGCACATATGATTCTA+CGG | + | chr1.3:49264907-49264926 | MS.gene54814:intron | 30.0% | |
| AATGAATGATAAGGAAAGGA+AGG | - | chr1.3:49261852-49261871 | None:intergenic | 30.0% | |
| ACAGGCATAGAAAAAGAAAT+TGG | + | chr1.3:49262157-49262176 | MS.gene54814:intron | 30.0% | |
| ACTATTAATTCCTAAGGGAT+CGG | - | chr1.3:49263908-49263927 | None:intergenic | 30.0% | |
| ATAAAGAAAACTGCTAAGAC+GGG | + | chr1.3:49262304-49262323 | MS.gene54814:CDS | 30.0% | |
| ATACAGTAAGGGATTATAAG+TGG | - | chr1.3:49262117-49262136 | None:intergenic | 30.0% | |
| ATCGAATGAATGATAAGGAA+AGG | - | chr1.3:49261856-49261875 | None:intergenic | 30.0% | |
| ATGTATGGTAAACATAGATG+TGG | - | chr1.3:49265458-49265477 | None:intergenic | 30.0% | |
| CAACCTTATAACTCTTAAGA+AGG | - | chr1.3:49264090-49264109 | None:intergenic | 30.0% | |
| CATCACTACAGAGTAATTTA+TGG | - | chr1.3:49263411-49263430 | None:intergenic | 30.0% | |
| CTAGCACTATTAATTCCTAA+GGG | - | chr1.3:49263913-49263932 | None:intergenic | 30.0% | |
| CTCTTAAGAAGGAAATACTA+TGG | - | chr1.3:49264079-49264098 | None:intergenic | 30.0% | |
| GAAAATCTCAGCTATACATT+GGG | + | chr1.3:49263814-49263833 | MS.gene54814:intron | 30.0% | |
| GAAAATTACATTACCTCTAG+TGG | - | chr1.3:49262030-49262049 | None:intergenic | 30.0% | |
| GATAAAGAAAACTGCTAAGA+CGG | + | chr1.3:49262303-49262322 | MS.gene54814:CDS | 30.0% | |
| GCTAATAGCTAAATTGACAA+GGG | + | chr1.3:49264834-49264853 | MS.gene54814:intron | 30.0% | |
| GGAAACTTTGCAATCTTAAA+AGG | - | chr1.3:49263253-49263272 | None:intergenic | 30.0% | |
| GTACATTAGCAAATGTATCT+AGG | + | chr1.3:49264608-49264627 | MS.gene54814:intron | 30.0% | |
| GTTGTATCATGCATAAGTAT+TGG | + | chr1.3:49264233-49264252 | MS.gene54814:intron | 30.0% | |
| TAAGTTGTTTATCCAAACAG+AGG | - | chr1.3:49262398-49262417 | None:intergenic | 30.0% | |
| TACCACAAACATAAAGACAT+AGG | + | chr1.3:49264286-49264305 | MS.gene54814:intron | 30.0% | |
| TAGTAATCCATAATCCAGTT+AGG | + | chr1.3:49263975-49263994 | MS.gene54814:intron | 30.0% | |
| TATTAGCAAGTTACACCTTT+AGG | - | chr1.3:49264430-49264449 | None:intergenic | 30.0% | |
| TCACAAGAAATTCACATGTA+TGG | - | chr1.3:49265473-49265492 | None:intergenic | 30.0% | |
| TGAAAATCTCAGCTATACAT+TGG | + | chr1.3:49263813-49263832 | MS.gene54814:intron | 30.0% | |
| ! | AATTTCTTTTTCTATGCCTG+TGG | - | chr1.3:49262158-49262177 | None:intergenic | 30.0% |
| ! | ACAATTCTGGGAAATTAATC+AGG | - | chr1.3:49263793-49263812 | None:intergenic | 30.0% |
| ! | CAATTTTGTGGTATTCCTAA+AGG | + | chr1.3:49264412-49264431 | MS.gene54814:intron | 30.0% |
| ! | CTGAGATTTTCAACAATTCT+GGG | - | chr1.3:49263805-49263824 | None:intergenic | 30.0% |
| ! | CTGGAACTCTTGAATAATTT+TGG | - | chr1.3:49263510-49263529 | None:intergenic | 30.0% |
| ! | CTTCATTTTCAATCTTTTGC+AGG | - | chr1.3:49263103-49263122 | None:intergenic | 30.0% |
| ! | GAGATTGTTCTTTTGCTAAA+AGG | + | chr1.3:49263293-49263312 | MS.gene54814:intron | 30.0% |
| ! | TCTTTAAAAACTAAGGATGG+AGG | - | chr1.3:49265238-49265257 | None:intergenic | 30.0% |
| !! | ACTTTCTTTAAGACATAGAG+GGG | - | chr1.3:49265332-49265351 | None:intergenic | 30.0% |
| !! | GAACTTTCTTTAAGACATAG+AGG | - | chr1.3:49265334-49265353 | None:intergenic | 30.0% |
| !! | GTTGTTTTCATAAGTCATCT+TGG | + | chr1.3:49262482-49262501 | MS.gene54814:intron | 30.0% |
| !!! | ACACGATTTTTGTTTTATCG+AGG | + | chr1.3:49264690-49264709 | MS.gene54814:intron | 30.0% |
| !!! | ATAATTTTGGCTTGCTTTGT+AGG | - | chr1.3:49263497-49263516 | None:intergenic | 30.0% |
| !!! | CTAGCTTACTTGTTTTAAAG+TGG | - | chr1.3:49264354-49264373 | None:intergenic | 30.0% |
| !!! | TATAGTCCCACTTGTTTTTT+TGG | + | chr1.3:49264499-49264518 | MS.gene54814:intron | 30.0% |
| !!! | TTCTGTTTTATTTACACTCC+TGG | + | chr1.3:49265114-49265133 | MS.gene54814:intron | 30.0% |
| !!! | TTTTGGTACTTTGTTTTCAG+GGG | + | chr1.3:49262833-49262852 | MS.gene54814:intron | 30.0% |
| AACTAAGGATGGAGGAAAAA+TGG | - | chr1.3:49265230-49265249 | None:intergenic | 35.0% | |
| AATGTGATTTAGCCTCTGTT+TGG | + | chr1.3:49262383-49262402 | MS.gene54814:intron | 35.0% | |
| ACGCTGCATAAATTGACATT+AGG | + | chr1.3:49263383-49263402 | MS.gene54814:intron | 35.0% | |
| ACTTTGCAATCTTAAAAGGC+CGG | - | chr1.3:49263249-49263268 | None:intergenic | 35.0% | |
| AGAATACTGAAAATGTCAGC+AGG | + | chr1.3:49265174-49265193 | MS.gene54814:CDS | 35.0% | |
| AGGAAATTAATGCATTGGGA+AGG | + | chr1.3:49263313-49263332 | MS.gene54814:intron | 35.0% | |
| ATCTGACAAATCAGGTACTA+AGG | + | chr1.3:49263710-49263729 | MS.gene54814:intron | 35.0% | |
| ATGTCAATTTATGCAGCGTT+AGG | - | chr1.3:49263382-49263401 | None:intergenic | 35.0% | |
| ATTATCCAAGACATCATCGA+TGG | - | chr1.3:49263665-49263684 | None:intergenic | 35.0% | |
| CAACAAATTGCTAACCTTCA+AGG | + | chr1.3:49262735-49262754 | MS.gene54814:CDS | 35.0% | |
| CCTAGCACTATTAATTCCTA+AGG | - | chr1.3:49263914-49263933 | None:intergenic | 35.0% | |
| CCTATGCTTATTATTCATGC+AGG | + | chr1.3:49262876-49262895 | MS.gene54814:intron | 35.0% | |
| CCTGCATGAATAATAAGCAT+AGG | - | chr1.3:49262879-49262898 | None:intergenic | 35.0% | |
| CCTTAGGAATTAATAGTGCT+AGG | + | chr1.3:49263911-49263930 | MS.gene54814:intron | 35.0% | |
| CTTCTCGATGTCATCAATTT+CGG | - | chr1.3:49265564-49265583 | None:intergenic | 35.0% | |
| GACAGTAAGAAAATGCAGTA+TGG | - | chr1.3:49265206-49265225 | None:intergenic | 35.0% | |
| GAGTGATCGAATGAATGATA+AGG | - | chr1.3:49261861-49261880 | None:intergenic | 35.0% | |
| GCAATGGCATCAAATTTCAA+AGG | - | chr1.3:49265537-49265556 | None:intergenic | 35.0% | |
| GGCTAATAGCTAAATTGACA+AGG | + | chr1.3:49264833-49264852 | MS.gene54814:intron | 35.0% | |
| GGTAAACATAGATGTGGATT+CGG | - | chr1.3:49265452-49265471 | None:intergenic | 35.0% | |
| GTACCAAAATTAGCATCAGA+TGG | - | chr1.3:49262822-49262841 | None:intergenic | 35.0% | |
| GTCCTATGTCTTTATGTTTG+TGG | - | chr1.3:49264291-49264310 | None:intergenic | 35.0% | |
| TAAAATATTAGCCAGGCAGT+TGG | + | chr1.3:49262701-49262720 | MS.gene54814:CDS | 35.0% | |
| TAAAGTGGCAGTACATTACT+TGG | - | chr1.3:49264339-49264358 | None:intergenic | 35.0% | |
| TAAATTCAGCACAACGGAAA+TGG | - | chr1.3:49263449-49263468 | None:intergenic | 35.0% | |
| TAACACACGTAGAACAACAT+AGG | + | chr1.3:49264130-49264149 | MS.gene54814:intron | 35.0% | |
| TGATGTCTTGGATAATGATG+AGG | + | chr1.3:49263669-49263688 | MS.gene54814:CDS | 35.0% | |
| TGCAGCAATGTATCATGTAT+CGG | - | chr1.3:49263019-49263038 | None:intergenic | 35.0% | |
| TTAATAGTGCTAGGAAATGC+AGG | + | chr1.3:49263920-49263939 | MS.gene54814:intron | 35.0% | |
| TTTCCAATGAATGATCGTGA+AGG | + | chr1.3:49263268-49263287 | MS.gene54814:intron | 35.0% | |
| ! | GCTAGCAAGTTACAATTTTG+TGG | + | chr1.3:49264400-49264419 | MS.gene54814:intron | 35.0% |
| ! | GCTGAGATTTTCAACAATTC+TGG | - | chr1.3:49263806-49263825 | None:intergenic | 35.0% |
| ! | TTTAAAAGAGTACAGACGAC+TGG | - | chr1.3:49265068-49265087 | None:intergenic | 35.0% |
| ! | TTTTCAATCTTTTGCAGGAG+AGG | - | chr1.3:49263098-49263117 | None:intergenic | 35.0% |
| !! | CTTTCTTTAAGACATAGAGG+GGG | - | chr1.3:49265331-49265350 | None:intergenic | 35.0% |
| !! | TTTCTTTAAGACATAGAGGG+GGG | - | chr1.3:49265330-49265349 | None:intergenic | 35.0% |
| !!! | TTTGGTACTTTGTTTTCAGG+GGG | + | chr1.3:49262834-49262853 | MS.gene54814:intron | 35.0% |
| AAAGCGAAATTGAATGACGG+TGG | - | chr1.3:49261917-49261936 | None:intergenic | 40.0% | |
| ACAGATTCTGCCATTAGATG+TGG | - | chr1.3:49263610-49263629 | None:intergenic | 40.0% | |
| ACATGATACATTGCTGCAGT+TGG | + | chr1.3:49263021-49263040 | MS.gene54814:intron | 40.0% | |
| ACGCAGTCCAAAAAAACAAG+TGG | - | chr1.3:49264509-49264528 | None:intergenic | 40.0% | |
| CAGAGAGAGTAAACGTGAAA+TGG | + | chr1.3:49261998-49262017 | MS.gene54814:CDS | 40.0% | |
| CATCCTTCACGATCATTCAT+TGG | - | chr1.3:49263274-49263293 | None:intergenic | 40.0% | |
| CCAGAAACAATCAGCACAAA+TGG | + | chr1.3:49263526-49263545 | MS.gene54814:CDS | 40.0% | |
| CGCAGTCCAAAAAAACAAGT+GGG | - | chr1.3:49264508-49264527 | None:intergenic | 40.0% | |
| CTGCGACTAAAATATTAGCC+AGG | + | chr1.3:49262694-49262713 | MS.gene54814:CDS | 40.0% | |
| CTTGTTCAAGGTTAAGGGTT+AGG | + | chr1.3:49263195-49263214 | MS.gene54814:intron | 40.0% | |
| GACAGAAGATCTGACAAATC+AGG | + | chr1.3:49263702-49263721 | MS.gene54814:CDS | 40.0% | |
| GCAGCAATGTATCATGTATC+GGG | - | chr1.3:49263018-49263037 | None:intergenic | 40.0% | |
| GGCAATGGAAGCTATGAATA+AGG | + | chr1.3:49262948-49262967 | MS.gene54814:CDS | 40.0% | |
| GTTCGTGTTTCCACATCTAA+TGG | + | chr1.3:49263597-49263616 | MS.gene54814:intron | 40.0% | |
| TACATTACCTCTAGTGGCAT+TGG | - | chr1.3:49262024-49262043 | None:intergenic | 40.0% | |
| TCCAAGAAACCTAAGCCAAA+AGG | + | chr1.3:49261824-49261843 | MS.gene54814:CDS | 40.0% | |
| TGAGTCACCTAACTGGATTA+TGG | - | chr1.3:49263985-49264004 | None:intergenic | 40.0% | |
| TTGCACATATGATTCTACGG+AGG | + | chr1.3:49264910-49264929 | MS.gene54814:intron | 40.0% | |
| TTGCGGAAGGTCTTACAAAT+TGG | + | chr1.3:49263131-49263150 | MS.gene54814:intron | 40.0% | |
| ! | AAGGAAAGGAAGGAACCTTT+TGG | - | chr1.3:49261842-49261861 | None:intergenic | 40.0% |
| ! | CCAAGCTTGTTCAAGGTTAA+GGG | + | chr1.3:49263190-49263209 | MS.gene54814:intron | 40.0% |
| ! | GGTCCATCTGATGCTAATTT+TGG | + | chr1.3:49262816-49262835 | MS.gene54814:intron | 40.0% |
| ! | TATCATCATGCACCTTTTGC+AGG | + | chr1.3:49262671-49262690 | MS.gene54814:intron | 40.0% |
| ! | TCCAAGCTTGTTCAAGGTTA+AGG | + | chr1.3:49263189-49263208 | MS.gene54814:intron | 40.0% |
| !! | AGGGGGGTGTTAATAGAAAA+AGG | - | chr1.3:49261956-49261975 | None:intergenic | 40.0% |
| !! | CCATTTGTGCTGATTGTTTC+TGG | - | chr1.3:49263529-49263548 | None:intergenic | 40.0% |
| !! | GGGGGGTGTTAATAGAAAAA+GGG | - | chr1.3:49261955-49261974 | None:intergenic | 40.0% |
| !!! | ACCTTTTGGCTTAGGTTTCT+TGG | - | chr1.3:49261828-49261847 | None:intergenic | 40.0% |
| !!! | TGAAGCTTTTGTTTTGCGGA+AGG | + | chr1.3:49263118-49263137 | MS.gene54814:intron | 40.0% |
| AACCTCTGCATGGATAGAGA+AGG | - | chr1.3:49261976-49261995 | None:intergenic | 45.0% | |
| AACTGCTAAGACGGGAAATG+AGG | + | chr1.3:49262312-49262331 | MS.gene54814:CDS | 45.0% | |
| ACACAGGTACATTGCTTGAG+TGG | + | chr1.3:49262792-49262811 | MS.gene54814:intron | 45.0% | |
| ACCTCTGCATGGATAGAGAA+GGG | - | chr1.3:49261975-49261994 | None:intergenic | 45.0% | |
| AGATGCCATCGATGATGTCT+TGG | + | chr1.3:49263657-49263676 | MS.gene54814:CDS | 45.0% | |
| ATCGGAACACAGGATGTTAC+AGG | - | chr1.3:49263890-49263909 | None:intergenic | 45.0% | |
| ATGTATCATGTATCGGGCCA+TGG | - | chr1.3:49263012-49263031 | None:intergenic | 45.0% | |
| CAGTTATCAGCAGCTCCAAA+AGG | + | chr1.3:49265137-49265156 | MS.gene54814:intron | 45.0% | |
| CATCAATTTCGGAGCTGCAA+TGG | - | chr1.3:49265553-49265572 | None:intergenic | 45.0% | |
| CCCTTAACCTTGAACAAGCT+TGG | - | chr1.3:49263193-49263212 | None:intergenic | 45.0% | |
| CGAAATTGAATGACGGTGGA+AGG | - | chr1.3:49261913-49261932 | None:intergenic | 45.0% | |
| CTTACTAGCACCTTTCATGC+CGG | - | chr1.3:49262929-49262948 | None:intergenic | 45.0% | |
| GTTCTACGTGTGTTATCCCT+GGG | - | chr1.3:49264125-49264144 | None:intergenic | 45.0% | |
| TATTAGCCAGGCAGTTGGTT+AGG | + | chr1.3:49262706-49262725 | MS.gene54814:CDS | 45.0% | |
| TCTCAGCTATACATTGGGCA+TGG | + | chr1.3:49263819-49263838 | MS.gene54814:intron | 45.0% | |
| TGGCAGGTACTCGATGAAAT+CGG | + | chr1.3:49264988-49265007 | MS.gene54814:intron | 45.0% | |
| TGTTCTACGTGTGTTATCCC+TGG | - | chr1.3:49264126-49264145 | None:intergenic | 45.0% | |
| TTCTACGTGTGTTATCCCTG+GGG | - | chr1.3:49264124-49264143 | None:intergenic | 45.0% | |
| TTTGAGCTCGACTACCTTGA+AGG | - | chr1.3:49262752-49262771 | None:intergenic | 45.0% | |
| ! | ATGGTGTCCAAGCTTGTTCA+AGG | + | chr1.3:49263183-49263202 | MS.gene54814:intron | 45.0% |
| ! | GTTGCATTTTATGCACCCCA+GGG | + | chr1.3:49264106-49264125 | MS.gene54814:intron | 45.0% |
| ! | TTTTAGTCGCAGCCTGCAAA+AGG | - | chr1.3:49262686-49262705 | None:intergenic | 45.0% |
| !! | ATGTTGCTTCACAGGTTGGT+TGG | + | chr1.3:49265016-49265035 | MS.gene54814:intron | 45.0% |
| !! | GAAAGGTGCTAGTAAGGCAA+TGG | + | chr1.3:49262933-49262952 | MS.gene54814:CDS | 45.0% |
| !! | GCTCAGTCTTCTATTTCTGC+CGG | + | chr1.3:49262907-49262926 | MS.gene54814:CDS | 45.0% |
| !! | TCTATTTCTGCCGGCATGAA+AGG | + | chr1.3:49262916-49262935 | MS.gene54814:CDS | 45.0% |
| !! | TGATGACATCGAGAAGCGTT+TGG | + | chr1.3:49265568-49265587 | MS.gene54814:CDS | 45.0% |
| !!! | AGGAAGGAACCTTTTGGCTT+AGG | - | chr1.3:49261836-49261855 | None:intergenic | 45.0% |
| !!! | GTACTTTGTTTTCAGGGGGT+GGG | + | chr1.3:49262838-49262857 | MS.gene54814:intron | 45.0% |
| !!! | GTGGGAGTATTTTAGTCAGC+TGG | + | chr1.3:49264469-49264488 | MS.gene54814:intron | 45.0% |
| !! | TTAAAAAAAAAAAAAAAACT+AGG | - | chr1.3:49262365-49262384 | None:intergenic | 5.0% |
| !!! | AAAAATTTAAAGTATTTTTA+AGG | - | chr1.3:49264809-49264828 | None:intergenic | 5.0% |
| !!! | TTAAAAATACTTTAAATTTT+TGG | + | chr1.3:49264808-49264827 | MS.gene54814:intron | 5.0% |
| !!! | TTACATTTTTTTTTTTTTTT+TGG | + | chr1.3:49262081-49262100 | MS.gene54814:intron | 5.0% |
| AGGCATAGCAACTCACACAC+AGG | + | chr1.3:49262776-49262795 | MS.gene54814:CDS | 50.0% | |
| ATCCTGTGTTCCGATCCCTT+AGG | + | chr1.3:49263895-49263914 | MS.gene54814:intron | 50.0% | |
| CAGGTACATTGCTTGAGTGG+TGG | + | chr1.3:49262795-49262814 | MS.gene54814:intron | 50.0% | |
| CCTCTGCATGGATAGAGAAG+GGG | - | chr1.3:49261974-49261993 | None:intergenic | 50.0% | |
| CTCTGCATGGATAGAGAAGG+GGG | - | chr1.3:49261973-49261992 | None:intergenic | 50.0% | |
| GAAATGGCCAATGCCACTAG+AGG | + | chr1.3:49262014-49262033 | MS.gene54814:CDS | 50.0% | |
| GGTAGTCGAGCTCAAATGAG+AGG | + | chr1.3:49262756-49262775 | MS.gene54814:CDS | 50.0% | |
| TCTCAGCTGAGTCACCTAAC+TGG | - | chr1.3:49263992-49264011 | None:intergenic | 50.0% | |
| TCTGCATGGATAGAGAAGGG+GGG | - | chr1.3:49261972-49261991 | None:intergenic | 50.0% | |
| TTCCTAAGGGATCGGAACAC+AGG | - | chr1.3:49263900-49263919 | None:intergenic | 50.0% | |
| ! | GGTTGCATTTTATGCACCCC+AGG | + | chr1.3:49264105-49264124 | MS.gene54814:intron | 50.0% |
| ! | GTGGATGTTGCTTCACAGGT+TGG | + | chr1.3:49265012-49265031 | MS.gene54814:intron | 50.0% |
| ! | TCTCTCTGAGAACCTCTGCA+TGG | - | chr1.3:49261986-49262005 | None:intergenic | 50.0% |
| !! | CGGCATGAAAGGTGCTAGTA+AGG | + | chr1.3:49262927-49262946 | MS.gene54814:CDS | 50.0% |
| !! | TGACATCGAGAAGCGTTTGG+CGG | + | chr1.3:49265571-49265590 | MS.gene54814:CDS | 50.0% |
| !!! | GGTACTTTGTTTTCAGGGGG+TGG | + | chr1.3:49262837-49262856 | MS.gene54814:intron | 50.0% |
| AGACATAGAGGGGGGACTGT+TGG | - | chr1.3:49265322-49265341 | None:intergenic | 55.0% | |
| CCAGGCAGTTGGTTAGGCTT+AGG | + | chr1.3:49262712-49262731 | MS.gene54814:CDS | 55.0% | |
| CCCCTTCTCTATCCATGCAG+AGG | + | chr1.3:49261971-49261990 | MS.gene54814:intron | 55.0% | |
| CCTAAGCCTAACCAACTGCC+TGG | - | chr1.3:49262715-49262734 | None:intergenic | 55.0% | |
| GGGGGACTGTTGGAATGGAT+GGG | - | chr1.3:49265312-49265331 | None:intergenic | 55.0% | |
| GGTACTCGATGAAATCGGCG+TGG | + | chr1.3:49264993-49265012 | MS.gene54814:intron | 55.0% | |
| TAGAGGGGGGACTGTTGGAA+TGG | - | chr1.3:49265317-49265336 | None:intergenic | 55.0% | |
| TGGAGCTGCTGATAACTGCC+AGG | - | chr1.3:49265135-49265154 | None:intergenic | 55.0% | |
| GGGGGGACTGTTGGAATGGA+TGG | - | chr1.3:49265313-49265332 | None:intergenic | 60.0% | |
| ! | CGGCGTGGATGTTGCTTCAC+AGG | + | chr1.3:49265008-49265027 | MS.gene54814:CDS | 60.0% |
| CGCGCGCGCACACACACACT+TGG | + | chr1.3:49264656-49264675 | MS.gene54814:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 49261800 | 49265610 | 49261800 | ID=MS.gene54814 |
| chr1.3 | mRNA | 49261800 | 49265610 | 49261800 | ID=MS.gene54814.t1;Parent=MS.gene54814 |
| chr1.3 | exon | 49261800 | 49261845 | 49261800 | ID=MS.gene54814.t1.exon1;Parent=MS.gene54814.t1 |
| chr1.3 | CDS | 49261800 | 49261845 | 49261800 | ID=cds.MS.gene54814.t1;Parent=MS.gene54814.t1 |
| chr1.3 | exon | 49261991 | 49262035 | 49261991 | ID=MS.gene54814.t1.exon2;Parent=MS.gene54814.t1 |
| chr1.3 | CDS | 49261991 | 49262035 | 49261991 | ID=cds.MS.gene54814.t1;Parent=MS.gene54814.t1 |
| chr1.3 | exon | 49262161 | 49262195 | 49262161 | ID=MS.gene54814.t1.exon3;Parent=MS.gene54814.t1 |
| chr1.3 | CDS | 49262161 | 49262195 | 49262161 | ID=cds.MS.gene54814.t1;Parent=MS.gene54814.t1 |
| chr1.3 | exon | 49262283 | 49262333 | 49262283 | ID=MS.gene54814.t1.exon4;Parent=MS.gene54814.t1 |
| chr1.3 | CDS | 49262283 | 49262333 | 49262283 | ID=cds.MS.gene54814.t1;Parent=MS.gene54814.t1 |
| chr1.3 | exon | 49262693 | 49262797 | 49262693 | ID=MS.gene54814.t1.exon5;Parent=MS.gene54814.t1 |
| chr1.3 | CDS | 49262693 | 49262797 | 49262693 | ID=cds.MS.gene54814.t1;Parent=MS.gene54814.t1 |
| chr1.3 | exon | 49262898 | 49262969 | 49262898 | ID=MS.gene54814.t1.exon6;Parent=MS.gene54814.t1 |
| chr1.3 | CDS | 49262898 | 49262969 | 49262898 | ID=cds.MS.gene54814.t1;Parent=MS.gene54814.t1 |
| chr1.3 | exon | 49263485 | 49263556 | 49263485 | ID=MS.gene54814.t1.exon7;Parent=MS.gene54814.t1 |
| chr1.3 | CDS | 49263485 | 49263556 | 49263485 | ID=cds.MS.gene54814.t1;Parent=MS.gene54814.t1 |
| chr1.3 | exon | 49263643 | 49263723 | 49263643 | ID=MS.gene54814.t1.exon8;Parent=MS.gene54814.t1 |
| chr1.3 | CDS | 49263643 | 49263723 | 49263643 | ID=cds.MS.gene54814.t1;Parent=MS.gene54814.t1 |
| chr1.3 | exon | 49264994 | 49265029 | 49264994 | ID=MS.gene54814.t1.exon9;Parent=MS.gene54814.t1 |
| chr1.3 | CDS | 49264994 | 49265029 | 49264994 | ID=cds.MS.gene54814.t1;Parent=MS.gene54814.t1 |
| chr1.3 | exon | 49265140 | 49265195 | 49265140 | ID=MS.gene54814.t1.exon10;Parent=MS.gene54814.t1 |
| chr1.3 | CDS | 49265140 | 49265195 | 49265140 | ID=cds.MS.gene54814.t1;Parent=MS.gene54814.t1 |
| chr1.3 | exon | 49265559 | 49265610 | 49265559 | ID=MS.gene54814.t1.exon11;Parent=MS.gene54814.t1 |
| chr1.3 | CDS | 49265559 | 49265610 | 49265559 | ID=cds.MS.gene54814.t1;Parent=MS.gene54814.t1 |
| Gene Sequence |
| Protein sequence |
