AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene54838

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene54838.t1 MTR_2g091280 91.792 731 59 1 2 732 1 730 0.0 1198
MS.gene54838.t1 MTR_2g091015 61.026 780 218 9 2 741 1 734 0.0 761
MS.gene54838.t1 MTR_2g091335 61.720 465 162 7 2 462 1 453 2.07e-168 502
MS.gene54838.t1 MTR_2g091335 45.198 354 146 5 411 725 100 444 1.10e-56 206
MS.gene54838.t1 MTR_2g091325 52.261 597 188 13 6 559 5 547 6.55e-158 474
MS.gene54838.t1 MTR_2g091325 48.260 431 171 10 309 725 167 559 1.17e-76 260
MS.gene54838.t1 MTR_7g056313 67.742 403 96 4 2 404 1 369 2.66e-153 454
MS.gene54838.t1 MTR_7g056313 40.590 271 144 5 445 700 101 369 2.03e-31 127
MS.gene54838.t1 MTR_2g091285 58.937 414 154 4 2 402 1 411 8.21e-133 409
MS.gene54838.t1 MTR_2g091285 42.900 331 143 8 436 740 136 446 6.78e-50 186
MS.gene54838.t1 MTR_2g091285 43.320 247 124 7 254 485 166 411 8.80e-32 132
MS.gene54838.t1 MTR_2g093010 43.931 758 334 16 1 741 1 684 2.33e-132 417
MS.gene54838.t1 MTR_2g093010 43.958 753 332 15 6 741 4 683 3.90e-132 416
MS.gene54838.t1 MTR_2g091250 41.264 807 346 15 4 724 15 779 1.26e-129 420
MS.gene54838.t1 MTR_2g091250 45.441 669 239 13 140 713 383 1020 9.55e-116 382
MS.gene54838.t1 MTR_2g091250 38.986 513 216 7 311 730 137 645 1.36e-59 221
MS.gene54838.t1 MTR_2g091250 41.451 386 164 11 134 467 653 1028 2.48e-44 174
MS.gene54838.t1 MTR_2g091110 40.482 830 329 19 43 720 2 818 9.93e-121 396
MS.gene54838.t1 MTR_2g091110 49.720 535 208 8 209 702 517 1031 2.75e-107 359
MS.gene54838.t1 MTR_2g091110 44.099 644 225 8 204 718 382 1019 8.02e-104 350
MS.gene54838.t1 MTR_2g091110 36.066 366 145 10 127 416 675 1027 2.69e-23 107
MS.gene54838.t1 MTR_2g091080 42.792 659 290 12 44 694 3 582 1.51e-115 370
MS.gene54838.t1 MTR_2g091080 37.937 543 261 14 222 718 66 578 6.72e-52 195
MS.gene54838.t1 MTR_2g091030 53.433 466 148 8 6 449 4 422 4.52e-109 347
MS.gene54838.t1 MTR_2g091030 41.641 329 149 7 436 741 145 453 2.14e-41 161
MS.gene54838.t1 MTR_2g091030 38.947 285 124 9 267 529 160 416 2.47e-24 108
MS.gene54838.t1 MTR_2g091030 36.893 309 145 10 309 581 139 433 1.37e-18 90.9
MS.gene54838.t1 MTR_2g091030 36.531 271 134 8 407 647 160 422 4.08e-16 83.2
MS.gene54838.t1 MTR_2g091010 41.878 671 278 20 4 642 2 592 4.77e-100 328
MS.gene54838.t1 MTR_2g091010 39.150 447 227 10 309 723 163 596 3.52e-46 177
MS.gene54838.t1 MTR_2g091315 42.857 630 263 15 2 605 1 559 4.35e-98 318
MS.gene54838.t1 MTR_2g091315 39.467 375 185 7 310 655 192 553 7.35e-34 138
MS.gene54838.t1 MTR_2g091315 35.452 409 226 8 323 720 125 506 2.46e-24 108
MS.gene54838.t1 MTR_2g091330 41.824 636 291 17 2 595 1 599 8.30e-91 300
MS.gene54838.t1 MTR_2g091330 45.407 381 165 7 310 657 220 590 1.05e-59 214
MS.gene54838.t1 MTR_2g091330 41.892 444 226 9 294 714 157 591 7.77e-56 204
MS.gene54838.t1 MTR_2g091260 41.005 617 238 17 6 526 4 590 4.62e-87 296
MS.gene54838.t1 MTR_2g091260 41.518 448 226 7 309 725 165 607 8.07e-54 202
MS.gene54838.t1 MTR_2g091105 45.374 454 177 11 6 431 4 414 8.86e-82 277
MS.gene54838.t1 MTR_2g091105 42.947 319 156 6 396 699 93 400 1.06e-39 157
MS.gene54838.t1 MTR_2g091105 33.240 358 191 8 313 658 94 415 4.85e-19 92.8
MS.gene54838.t1 MTR_2g091290 40.037 547 233 12 53 524 26 552 3.66e-78 270
MS.gene54838.t1 MTR_2g091290 36.019 422 218 5 337 723 158 562 1.61e-39 157
MS.gene54838.t1 MTR_3g110385 39.280 611 271 14 45 608 7 564 5.43e-77 267
MS.gene54838.t1 MTR_3g110385 41.371 394 173 5 363 729 211 573 1.15e-53 201
MS.gene54838.t1 MTR_2g090640 49.750 400 127 5 180 579 100 425 1.26e-76 259
MS.gene54838.t1 MTR_2g090640 42.945 326 155 5 419 729 126 435 7.59e-37 147
MS.gene54838.t1 MTR_2g090640 31.660 259 136 6 115 339 182 433 2.64e-12 70.9
MS.gene54838.t1 MTR_2g091370 38.889 576 246 14 7 487 5 569 3.62e-76 265
MS.gene54838.t1 MTR_2g091370 34.227 485 240 11 302 731 123 583 1.64e-34 142
MS.gene54838.t1 MTR_2g091275 94.737 133 7 0 725 857 2 134 1.06e-75 243
MS.gene54838.t1 MTR_6g045183 42.886 499 232 12 1 466 1 479 5.22e-71 249
MS.gene54838.t1 MTR_6g045183 40.525 343 188 5 393 725 162 498 2.72e-33 138
MS.gene54838.t1 MTR_6g045183 35.890 326 143 9 323 592 162 477 1.11e-22 104
MS.gene54838.t1 MTR_6g045183 32.759 406 203 9 187 574 134 487 2.62e-22 103
MS.gene54838.t1 MTR_2g091245 42.927 410 198 7 44 446 7 387 1.39e-64 229
MS.gene54838.t1 MTR_2g091245 41.724 290 155 3 449 725 110 398 2.50e-34 140
MS.gene54838.t1 MTR_2g091005 37.571 527 215 13 15 448 14 519 3.57e-64 227
MS.gene54838.t1 MTR_2g091005 32.889 450 243 13 302 722 106 525 1.13e-27 119
MS.gene54838.t1 MTR_5g038810 44.474 371 139 5 61 431 21 324 3.01e-63 226
MS.gene54838.t1 MTR_5g038810 41.784 213 115 3 495 707 149 352 1.49e-27 119
MS.gene54838.t1 MTR_5g038810 30.058 346 175 8 449 767 81 386 1.08e-18 91.7
MS.gene54838.t1 MTR_2g010420 32.684 667 303 14 66 729 57 580 1.90e-58 213
MS.gene54838.t1 MTR_2g010420 32.684 667 303 14 66 729 57 580 4.31e-58 214
MS.gene54838.t1 MTR_2g091040 39.955 443 197 14 1 414 1 403 1.36e-55 201
MS.gene54838.t1 MTR_2g091040 34.521 365 206 7 358 710 27 370 4.70e-28 120
MS.gene54838.t1 MTR_2g091040 30.469 384 198 10 319 658 16 374 2.52e-16 83.6
MS.gene54838.t1 MTR_2g091040 33.333 294 139 7 311 596 124 368 3.18e-12 70.5
MS.gene54838.t1 MTR_2g091040 33.444 302 142 10 325 617 124 375 5.45e-12 69.7
MS.gene54838.t1 MTR_2g091090 39.955 443 197 14 1 414 1 403 2.70e-54 200
MS.gene54838.t1 MTR_2g091090 34.521 365 206 7 358 710 27 370 5.23e-28 120
MS.gene54838.t1 MTR_2g091090 30.469 384 198 10 319 658 16 374 1.20e-16 85.1
MS.gene54838.t1 MTR_2g091090 33.333 294 139 7 311 596 124 368 1.40e-12 72.0
MS.gene54838.t1 MTR_2g091090 30.864 324 166 9 313 617 91 375 2.41e-12 71.2
MS.gene54838.t1 MTR_5g078510 52.650 283 107 5 252 525 1 265 3.72e-51 189
MS.gene54838.t1 MTR_5g078510 47.183 284 113 3 448 710 1 268 2.97e-45 171
MS.gene54838.t1 MTR_5g078510 45.109 184 101 0 536 719 3 186 1.19e-25 112
MS.gene54838.t1 MTR_5g078510 38.762 307 153 7 155 461 2 273 3.32e-24 108
MS.gene54838.t1 MTR_5g078510 35.662 272 131 8 126 375 22 271 3.41e-16 83.2
MS.gene54838.t1 MTR_5g078510 40.972 144 85 0 576 719 1 144 7.82e-11 65.9
MS.gene54838.t1 MTR_5g078500 39.326 356 155 12 2 348 1 304 4.75e-49 176
MS.gene54838.t1 MTR_5g078500 35.714 238 127 6 396 630 90 304 2.69e-13 72.0
MS.gene54838.t1 MTR_2g104190 37.393 468 203 12 2 398 1 449 2.63e-48 182
MS.gene54838.t1 MTR_2g104190 32.734 278 147 7 379 638 194 449 2.17e-17 87.4
MS.gene54838.t1 MTR_2g104190 30.576 278 165 5 445 695 174 450 7.36e-14 75.9
MS.gene54838.t1 MTR_2g091240 47.549 204 74 3 531 722 136 318 2.79e-33 136
MS.gene54838.t1 MTR_2g091240 43.781 201 90 4 310 487 110 310 5.79e-25 110
MS.gene54838.t1 MTR_2g091240 36.364 297 136 8 216 492 78 341 2.19e-23 105
MS.gene54838.t1 MTR_2g091240 31.991 422 170 13 42 425 10 352 8.68e-22 100
MS.gene54838.t1 MTR_2g091240 38.647 207 98 5 451 657 132 309 1.94e-18 90.5
MS.gene54838.t1 MTR_2g091025 41.985 262 91 5 329 587 136 339 1.07e-30 128
MS.gene54838.t1 MTR_2g091025 39.918 243 122 4 225 457 109 337 3.39e-26 114
MS.gene54838.t1 MTR_2g091025 37.591 274 135 6 425 695 109 349 1.58e-25 112
MS.gene54838.t1 MTR_2g091025 33.724 341 141 13 52 387 77 337 1.33e-18 90.9
MS.gene54838.t1 MTR_2g091360 47.727 176 50 2 207 382 23 156 6.03e-28 115
MS.gene54838.t1 MTR_2g091360 48.718 156 63 3 509 664 18 156 1.60e-23 102
MS.gene54838.t1 MTR_2g091360 54.310 116 49 1 313 424 41 156 1.21e-20 94.4
MS.gene54838.t1 MTR_2g091360 41.975 162 65 2 460 620 21 154 4.86e-20 92.8
MS.gene54838.t1 MTR_2g091360 44.586 157 82 2 337 489 24 179 1.06e-19 91.7
MS.gene54838.t1 MTR_2g091360 33.333 195 113 5 591 770 24 216 6.34e-11 65.1
MS.gene54838.t1 MTR_2g103640 36.620 284 122 8 65 347 2 228 1.17e-21 97.8
MS.gene54838.t1 MTR_2g103640 38.835 206 116 5 568 767 82 283 1.46e-17 85.9
MS.gene54838.t1 MTR_2g103640 31.200 250 144 5 528 760 70 308 3.74e-12 69.3
MS.gene54838.t1 MTR_2g103640 37.671 146 70 4 304 431 86 228 5.43e-11 65.5
MS.gene54838.t1 MTR_2g103620 35.417 288 99 8 61 333 8 223 6.06e-20 93.2
MS.gene54838.t1 MTR_2g103620 46.018 113 61 0 545 657 111 223 2.76e-12 69.7
MS.gene54838.t1 MTR_2g103620 39.490 157 85 3 309 459 71 223 8.18e-11 65.5
MS.gene54838.t1 MTR_8g106540 64.062 64 23 0 545 608 54 117 8.18e-14 73.6
MS.gene54838.t1 MTR_4g084920 28.364 275 147 7 122 392 1 229 1.02e-11 67.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 172 sgRNAs with CRISPR-Local

Find 237 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCCTCAATATCTCTCTTTA+TGG 0.161451 2.1:-9608302 None:intergenic
GCCATTGAAAGGACAATTTA+AGG 0.170884 2.1:+9608774 MS.gene54838:CDS
CCTTCAAATTCCCTCTCTTT+TGG 0.234230 2.1:-9609306 None:intergenic
GAAAGACCTCCTGTTGTTCT+TGG 0.273432 2.1:+9610835 MS.gene54838:intron
CTCTCAACTCAGACTCCTTC+CGG 0.276333 2.1:-9609971 None:intergenic
ATTCCTGTTGTTATTGCTCC+TGG 0.277467 2.1:+9610859 MS.gene54838:CDS
TTATCAAATGCCCTCTTAAC+TGG 0.288608 2.1:-9608073 None:intergenic
AAGAGAGGCATTTCAATAAC+TGG 0.293022 2.1:+9608725 MS.gene54838:CDS
GCCATACACAGTCCAATCTT+TGG 0.301842 2.1:-9611180 None:intergenic
TTGATTTAAACTCCTTCATT+TGG 0.305625 2.1:-9609038 None:intergenic
TTGATGCCAGTTCCTTCATT+TGG 0.311358 2.1:-9609080 None:intergenic
TTGACTCAAGCTCCTTCATT+TGG 0.312326 2.1:-9609506 None:intergenic
TTGTTTGATTTCTTTGCAGC+AGG 0.332150 2.1:-9610928 None:intergenic
AACAGTTTGAAGAACAAGTT+AGG 0.348135 2.1:+9609913 MS.gene54838:CDS
AAAGGAAGGACAGCTCTATT+TGG 0.353464 2.1:+9608441 MS.gene54838:CDS
TTGAACGAGAGAGAACTTAA+AGG 0.354677 2.1:+9609441 MS.gene54838:CDS
CAAACCAAAGGTGAAGCATT+TGG 0.365684 2.1:+9610948 MS.gene54838:CDS
TCAATTCGTGCTCCTTCAAT+CGG 0.375254 2.1:-9609422 None:intergenic
GTAGTAGTATCCCTCTTCTT+AGG 0.382437 2.1:-9608046 None:intergenic
TTCTTTGCAGCAGGGGCAAT+AGG 0.382448 2.1:-9610919 None:intergenic
AGTCCCAAATGCTTCACCTT+TGG 0.385835 2.1:-9610952 None:intergenic
CATTATCATCATATGGTGTT+GGG 0.386105 2.1:-9608138 None:intergenic
GACTGATTTGGTATCAAAAC+AGG 0.390438 2.1:+9609470 MS.gene54838:CDS
CAAAAGGAAATTAGTTATGT+TGG 0.391520 2.1:+9608349 MS.gene54838:CDS
ACTCAGGGCATTTGTTGTTA+AGG 0.392622 2.1:+9611206 MS.gene54838:CDS
TTGACTCAAGCTCCTTGATT+CGG 0.400367 2.1:-9608870 None:intergenic
CGGATTCATGCTCCTTCAAT+CGG 0.403851 2.1:-9608660 None:intergenic
TAAAGGTCAAGTGACTGATT+TGG 0.405546 2.1:+9609458 MS.gene54838:CDS
CTGATTCCAGCTCCTTCACT+CGG 0.407793 2.1:-9609548 None:intergenic
ATAATCATTGTAGTCCTTAA+CGG 0.408991 2.1:-9608161 None:intergenic
AAACCAAAGGTGAAGCATTT+GGG 0.409140 2.1:+9610949 MS.gene54838:CDS
TTTCTTCATCAAACCACATA+AGG 0.412199 2.1:-9608104 None:intergenic
TCCTTAAATTGTCCTTTCAA+TGG 0.412242 2.1:-9608775 None:intergenic
TTCCTGTTGTTATTGCTCCT+GGG 0.416805 2.1:+9610860 MS.gene54838:CDS
CTACTACACTGCCAGTTAAG+AGG 0.422986 2.1:+9608062 MS.gene54838:CDS
AGCGAAGGAACTGGTATTGA+TGG 0.424906 2.1:+9609332 MS.gene54838:CDS
GAAACAATTAATCCAAAGAT+TGG 0.427726 2.1:+9611168 MS.gene54838:CDS
ACAGGAATGCCAAGAACAAC+AGG 0.431004 2.1:-9610844 None:intergenic
GATAACAACAGTTCCTTATG+TGG 0.439661 2.1:+9608091 MS.gene54838:CDS
TAGATTCCAGCTCCCTCACT+TGG 0.445031 2.1:-9609206 None:intergenic
TCCAAAGATTGGACTGTGTA+TGG 0.447043 2.1:+9611179 MS.gene54838:CDS
ATATGATGATAATGCCGTTA+AGG 0.447093 2.1:+9608147 MS.gene54838:CDS
GAAGGAGCTAGGGAATGATT+TGG 0.447587 2.1:+9608570 MS.gene54838:CDS
TGAAGGCCAAATGAAGGAAC+TGG 0.447715 2.1:+9609074 MS.gene54838:CDS
GCATTATCATCATATGGTGT+TGG 0.449414 2.1:-9608139 None:intergenic
GAGATGAATGTGGCAGATAA+TGG 0.453041 2.1:+9611108 MS.gene54838:CDS
TAGATTTCAGCTCCTTCACC+TGG 0.455535 2.1:-9608954 None:intergenic
TAGATTCCAGCTCCTTCACT+TGG 0.457595 2.1:-9608828 None:intergenic
GCAAGATGAAGTCCGATTGA+AGG 0.458127 2.1:+9609410 MS.gene54838:CDS
GCAATTTGAAAGACAAGTAA+AGG 0.469076 2.1:+9609236 MS.gene54838:CDS
TTGATTCAAGCTCCTTCAGT+TGG 0.469695 2.1:-9609590 None:intergenic
AGAGAGAGAATTTGAAGGCC+AGG 0.471998 2.1:+9608936 MS.gene54838:CDS
TGAGAATAAGTTCAAACTAC+TGG 0.473729 2.1:+9609866 MS.gene54838:CDS
TTGGTTCAAACTCCTTCACT+TGG 0.476109 2.1:-9609287 None:intergenic
CCTTCATTTGGTCTACAAGT+TGG 0.477224 2.1:-9609026 None:intergenic
TCAAAAGAGAAGCAACTTGA+AGG 0.478925 2.1:+9608637 MS.gene54838:CDS
GCAGCATGAAGGCCGGGTGA+AGG 0.482203 2.1:+9608900 MS.gene54838:CDS
GAAAGCCAAGTGAAGGAGCT+AGG 0.483814 2.1:+9608559 MS.gene54838:CDS
TGAAAGACAAGTAAAGGAGT+TGG 0.486342 2.1:+9609242 MS.gene54838:CDS
TTAACGGCATTATCATCATA+TGG 0.488852 2.1:-9608145 None:intergenic
GGTGCTTCTGAGCTGCTACC+AGG 0.488857 2.1:-9611033 None:intergenic
CATTCCCTAGCTCCTTCACT+TGG 0.489517 2.1:-9608564 None:intergenic
TGCCCAGGAGCAATAACAAC+AGG 0.490819 2.1:-9610862 None:intergenic
TCGACTCAAGCTCTTTCACT+TGG 0.498494 2.1:-9609380 None:intergenic
GCAACTTGAAGGCCGATTGA+AGG 0.499981 2.1:+9608648 MS.gene54838:CDS
TTGACTCTAACTCCTTGACT+TGG 0.501617 2.1:-9608996 None:intergenic
TTTGATGAGGAAAACAAATC+GGG 0.503016 2.1:+9610023 MS.gene54838:CDS
GACTGTGTATGGCAGCACTC+AGG 0.504645 2.1:+9611190 MS.gene54838:CDS
TAGATTCCAGCTGATTCACT+TGG 0.505824 2.1:-9608702 None:intergenic
TCATCATCATCAATCACAAA+TGG 0.509973 2.1:-9611054 None:intergenic
CAAAACAGAAGCATTTCAAA+AGG 0.510820 2.1:+9609100 MS.gene54838:CDS
GGAAGGACAGCTCTATTTGG+TGG 0.511268 2.1:+9608444 MS.gene54838:CDS
GGAGTTTGAATCAAAGGAGG+AGG 0.512633 2.1:+9609767 MS.gene54838:CDS
GAAATTCAAAGAACAAATGA+AGG 0.513200 2.1:+9609704 MS.gene54838:CDS
TTCCATAAAGAGAGATATTG+AGG 0.514073 2.1:+9608300 MS.gene54838:CDS
TGAAGGCGAAGCGAAGGAAC+TGG 0.514177 2.1:+9609323 MS.gene54838:CDS
AGAACTATTGTCAAAGGTCC+TGG 0.514238 2.1:+9611015 MS.gene54838:CDS
CCAAAAGAGAGGGAATTTGA+AGG 0.519959 2.1:+9609306 MS.gene54838:CDS
AGAATTTGAAGGCCAGGTGA+AGG 0.520147 2.1:+9608942 MS.gene54838:CDS
TAGGGATCCTGAGTCAAAGT+TGG 0.523694 2.1:+9609932 MS.gene54838:CDS
AGGAGTTTAAATCAAAAGAG+AGG 0.525751 2.1:+9609046 MS.gene54838:CDS
GATTTATCAGTGGACATGGC+AGG 0.528984 2.1:-9608187 None:intergenic
AAGAGAAGCAGCATGAAGGC+CGG 0.529945 2.1:+9608893 MS.gene54838:CDS
AGAAGCTCACAAGAAAATGC+AGG 0.530397 2.1:+9608384 MS.gene54838:CDS
TGTTTGATTTCTTTGCAGCA+GGG 0.530480 2.1:-9610927 None:intergenic
ACAAAATTGATGCCATTGAA+AGG 0.531067 2.1:+9608763 MS.gene54838:CDS
GATAATGGTGATGGAAATTG+TGG 0.533323 2.1:+9611123 MS.gene54838:CDS
ATGATGTTCCTTTGTCAGCA+AGG 0.533481 2.1:+9608020 MS.gene54838:CDS
GAAGGAGTTCCACGCAAAAG+AGG 0.539016 2.1:+9609722 MS.gene54838:CDS
GGAATTTGAAGGCCAAATGA+AGG 0.539397 2.1:+9609068 MS.gene54838:CDS
AGTGAAGGAGTTTGAATCAA+AGG 0.539762 2.1:+9609761 MS.gene54838:CDS
CGATGGCCAAGTGAAGGAGC+TGG 0.540952 2.1:+9608822 MS.gene54838:CDS
ACTGTGTATGGCAGCACTCA+GGG 0.545636 2.1:+9611191 MS.gene54838:CDS
GAAAGAGTTCCAGTCAAAAG+AGG 0.545841 2.1:+9609638 MS.gene54838:CDS
AGAACTCAAGACAAAAGAGT+TGG 0.545966 2.1:+9608492 MS.gene54838:CDS
GGAGTTTAAATCAAAAGAGA+GGG 0.546337 2.1:+9609047 MS.gene54838:CDS
TGAAGACCAAGTGAATCAGC+TGG 0.546829 2.1:+9608696 MS.gene54838:CDS
TCAAAAGAGAGAGAATTTGA+AGG 0.547920 2.1:+9608931 MS.gene54838:CDS
GGAGTTCAAAGGTCAAGTTA+AGG 0.549517 2.1:+9609788 MS.gene54838:CDS
CAGCAAGGTTTCCTAAGAAG+AGG 0.554182 2.1:+9608035 MS.gene54838:CDS
GCAACATGAAGGCCGAGTGA+AGG 0.554396 2.1:+9609536 MS.gene54838:CDS
AGAGAAGCAGCATGAAGGCC+GGG 0.557189 2.1:+9608894 MS.gene54838:CDS
GCAGTTTGAAAACCGAATCA+AGG 0.560658 2.1:+9608858 MS.gene54838:CDS
TACTACACTGCCAGTTAAGA+GGG 0.561184 2.1:+9608063 MS.gene54838:CDS
TTGATGCAAGCTCCTTCACC+CGG 0.561771 2.1:-9608912 None:intergenic
TCAAAAGAGAGGGAATTTGA+AGG 0.562485 2.1:+9609057 MS.gene54838:CDS
ATATGGTGTTGGGGACACCT+TGG 0.563762 2.1:-9608128 None:intergenic
TCATTTCGAAAGCCAAATGA+AGG 0.563814 2.1:+9609494 MS.gene54838:CDS
TTTGCAGCAGGGGCAATAGG+TGG 0.564098 2.1:-9610916 None:intergenic
ACAGTTTGAAGAACAAGTTA+GGG 0.566911 2.1:+9609914 MS.gene54838:CDS
CCAACTTGTAGACCAAATGA+AGG 0.567413 2.1:+9609026 MS.gene54838:CDS
TTAGGAAACCTTGCTGACAA+AGG 0.568642 2.1:-9608028 None:intergenic
AAGGAGTTCCACGCAAAAGA+GGG 0.569197 2.1:+9609723 MS.gene54838:CDS
TCAAAAGAGAAGCAGCATGA+AGG 0.569518 2.1:+9608889 MS.gene54838:CDS
TTCGGAAATTGATTTATCAG+TGG 0.570747 2.1:-9608197 None:intergenic
AAGATGAGAACTATTGTCAA+AGG 0.571553 2.1:+9611009 MS.gene54838:CDS
ACTCCTTCACTTGGCCTACA+CGG 0.572302 2.1:-9609278 None:intergenic
GCATTTCAAAAGGAGAATGA+AGG 0.573739 2.1:+9609110 MS.gene54838:CDS
GTTTGATTTCTTTGCAGCAG+GGG 0.573848 2.1:-9610926 None:intergenic
GGAATTTGAAGGCGAAGCGA+AGG 0.574466 2.1:+9609317 MS.gene54838:CDS
TGAAGGCCGAGTGAAGGAGC+TGG 0.575090 2.1:+9609542 MS.gene54838:CDS
TATGAAACTGTATCTGATGA+TGG 0.575947 2.1:+9611084 MS.gene54838:CDS
AGAAGCAATTTGAAGAACGA+TGG 0.578241 2.1:+9609826 MS.gene54838:CDS
AAAGCCAAGTGAAGGAGCTA+GGG 0.578269 2.1:+9608560 MS.gene54838:CDS
TAAAAGCCAAGTGAGGGAGC+TGG 0.582561 2.1:+9609200 MS.gene54838:CDS
AATCATTTGAGAAATGCAGA+AGG 0.586274 2.1:+9608248 MS.gene54838:CDS
GGAGTTTGAACCAAAAGAGA+GGG 0.588020 2.1:+9609296 MS.gene54838:CDS
GGAATTTGAAAGCCAAGTGA+AGG 0.590131 2.1:+9608552 MS.gene54838:CDS
GCAACATGAAGGTCAAGTGA+AGG 0.591559 2.1:+9609152 MS.gene54838:CDS
TCAAAAGAGAAGCAACATGA+AGG 0.592048 2.1:+9609525 MS.gene54838:CDS
AAAATTTGATGGACACCGGA+AGG 0.592327 2.1:+9609956 MS.gene54838:CDS
AATGTGGCAGATAATGGTGA+TGG 0.595309 2.1:+9611114 MS.gene54838:CDS
TCAAAAGAGAAGCAACATGA+AGG 0.596455 2.1:+9609141 MS.gene54838:CDS
GAGAATTTAAAAGCCAAGTG+AGG 0.597241 2.1:+9609193 MS.gene54838:CDS
GGATAACATTTCAAAACAGA+AGG 0.598026 2.1:+9608531 MS.gene54838:CDS
GCATTTCGAGAGCCAACTGA+AGG 0.599551 2.1:+9609578 MS.gene54838:CDS
GGACTACAAAGAAGAACAAG+TGG 0.601287 2.1:+9610970 MS.gene54838:CDS
GAAGGAGTTTGAATCAAAGG+AGG 0.602095 2.1:+9609764 MS.gene54838:CDS
AGAATTTAAAAGCCAAGTGA+GGG 0.602507 2.1:+9609194 MS.gene54838:CDS
GCATTTCAATAACTGGGTGG+AGG 0.603919 2.1:+9608732 MS.gene54838:CDS
GCAACTCGATGGCCAAGTGA+AGG 0.604571 2.1:+9608816 MS.gene54838:CDS
AGCAAGGTTTCCTAAGAAGA+GGG 0.606524 2.1:+9608036 MS.gene54838:CDS
AGGACAGCTCTATTTGGTGG+AGG 0.607794 2.1:+9608447 MS.gene54838:CDS
TCAAAGGAGGAGGAGTTCAA+AGG 0.609595 2.1:+9609777 MS.gene54838:CDS
AGAGTTCCAGTCAAAAGAGG+AGG 0.614100 2.1:+9609641 MS.gene54838:CDS
GCTGTTTGAAATCCAAGTCA+AGG 0.615868 2.1:+9608984 MS.gene54838:CDS
TAACCGTGTAGGCCAAGTGA+AGG 0.618801 2.1:+9609275 MS.gene54838:CDS
AATTGATTTATCAGTGGACA+TGG 0.619907 2.1:-9608191 None:intergenic
ATTATCATCATATGGTGTTG+GGG 0.620252 2.1:-9608137 None:intergenic
AGAGAGGCATTTCAATAACT+GGG 0.622499 2.1:+9608726 MS.gene54838:CDS
TCAAAAGAGGAGGAACTCAA+AGG 0.626616 2.1:+9609651 MS.gene54838:CDS
GAAGCTCACAAGAAAATGCA+GGG 0.628952 2.1:+9608385 MS.gene54838:CDS
GGAACTCAAAGGTCAACTGA+AGG 0.631070 2.1:+9609662 MS.gene54838:CDS
ATCATTTGAGAAATGCAGAA+GGG 0.632081 2.1:+9608249 MS.gene54838:CDS
GAGTCAAAATATAACCGTGT+AGG 0.633981 2.1:+9609264 MS.gene54838:CDS
GATGGAAATTGTGGTAGAGA+TGG 0.634097 2.1:+9611132 MS.gene54838:CDS
GTTGGAACTTCGTCAAGTCA+CGG 0.634580 2.1:+9608510 MS.gene54838:CDS
TCTAAAGAGAAGCAACTCGA+TGG 0.636161 2.1:+9608805 MS.gene54838:CDS
AAAGAAATCAAACAAACCAA+AGG 0.638419 2.1:+9610936 MS.gene54838:CDS
TTGACTCAAGCTCCTCCATG+CGG 0.646295 2.1:-9608618 None:intergenic
TTGAATGATGGATGTTGCTG+AGG 0.649557 2.1:+9607865 None:intergenic
GGAGTTCCACGCAAAAGAGG+GGG 0.655574 2.1:+9609725 MS.gene54838:CDS
AGGAGTTTGAACCAAAAGAG+AGG 0.655721 2.1:+9609295 MS.gene54838:CDS
GGAATTCAAAGGTCAAGTGA+AGG 0.661936 2.1:+9609746 MS.gene54838:CDS
AGGAGTTCCACGCAAAAGAG+GGG 0.674939 2.1:+9609724 MS.gene54838:CDS
CATGCATTACAAAAGCCGCA+TGG 0.677035 2.1:+9608603 MS.gene54838:CDS
ATCAGCTGGAATCTAAAGAG+AGG 0.679378 2.1:+9608710 MS.gene54838:CDS
GGAATGCCAAGAACAACAGG+AGG 0.700042 2.1:-9610841 None:intergenic
TGGTTTGATGAAGAAATCCA+AGG 0.706551 2.1:+9608111 MS.gene54838:CDS
TGATGATGGTGAGATGAATG+TGG 0.719058 2.1:+9611098 MS.gene54838:CDS
GAGGCATTTCAATAACTGGG+TGG 0.725605 2.1:+9608729 MS.gene54838:CDS
GCATTACAAAAGCCGCATGG+AGG 0.730968 2.1:+9608606 MS.gene54838:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTATAATTAAACTTATCTAT+GGG - chr2.1:9610297-9610316 None:intergenic 10.0%
!! TTTATAATTAAACTTATCTA+TGG - chr2.1:9610298-9610317 None:intergenic 10.0%
!!! AACTATTTATAGTTTTATTT+AGG + chr2.1:9610463-9610482 MS.gene54838:intron 10.0%
!!! ACTATTTATAGTTTTATTTA+GGG + chr2.1:9610464-9610483 MS.gene54838:intron 10.0%
!! TATAATTAAACTTATCTATG+GGG - chr2.1:9610296-9610315 None:intergenic 15.0%
!! TTTAGATTCATTAAATATCA+AGG - chr2.1:9610264-9610283 None:intergenic 15.0%
!!! AAGATCACTTAAATTTTAAA+TGG + chr2.1:9607927-9607946 MS.gene54838:CDS 15.0%
!!! TCATCAAAATCTTTTATTAA+CGG - chr2.1:9610011-9610030 None:intergenic 15.0%
!! AGAACTTAAAAATAAGCAAA+AGG + chr2.1:9608333-9608352 MS.gene54838:CDS 20.0%
!!! AAATGGGTTCAAATATTATA+GGG - chr2.1:9610565-9610584 None:intergenic 20.0%
!!! GTTAATAAAAGATTTTGATG+AGG + chr2.1:9610010-9610029 MS.gene54838:CDS 20.0%
!!! TAAATGGGTTCAAATATTAT+AGG - chr2.1:9610566-9610585 None:intergenic 20.0%
!!! TAATGTAGATTTAGTTTTTC+AGG + chr2.1:9610350-9610369 MS.gene54838:intron 20.0%
!!! TAATTTTGCATTATTTGTAC+AGG - chr2.1:9610700-9610719 None:intergenic 20.0%
! AAAAATTGAAGAATGTGTCA+AGG + chr2.1:9608408-9608427 MS.gene54838:CDS 25.0%
! AAAGAAATCAAACAAACCAA+AGG + chr2.1:9610936-9610955 MS.gene54838:CDS 25.0%
! AACGAGGGATTAAATATAAA+TGG - chr2.1:9610582-9610601 None:intergenic 25.0%
! AATATTCTGATAACCATTGA+GGG + chr2.1:9610417-9610436 MS.gene54838:intron 25.0%
! ACGAGGGATTAAATATAAAT+GGG - chr2.1:9610581-9610600 None:intergenic 25.0%
! ATAATCATTGTAGTCCTTAA+CGG - chr2.1:9608164-9608183 None:intergenic 25.0%
! CAAAAGGAAATTAGTTATGT+TGG + chr2.1:9608349-9608368 MS.gene54838:CDS 25.0%
! CAAAATTACTAAAATGCTCA+GGG + chr2.1:9610712-9610731 MS.gene54838:intron 25.0%
! GAAACAATTAATCCAAAGAT+TGG + chr2.1:9611168-9611187 MS.gene54838:CDS 25.0%
! GAAATTCAAAGAACAAATGA+AGG + chr2.1:9609704-9609723 MS.gene54838:CDS 25.0%
! TCAAAGTTGGAAAAATTTGA+TGG + chr2.1:9609945-9609964 MS.gene54838:CDS 25.0%
! TTGATTTAAACTCCTTCATT+TGG - chr2.1:9609041-9609060 None:intergenic 25.0%
!! AATGGGTTCAAATATTATAG+GGG - chr2.1:9610564-9610583 None:intergenic 25.0%
!! GTCTTCAAATTCTTTTTCTT+CGG - chr2.1:9608683-9608702 None:intergenic 25.0%
!! TTTTGATGAGGAAAACAAAT+CGG + chr2.1:9610022-9610041 MS.gene54838:CDS 25.0%
AAAAAACTGCAATTGAGTTC+TGG - chr2.1:9610802-9610821 None:intergenic 30.0%
AACAGTTTGAAGAACAAGTT+AGG + chr2.1:9609913-9609932 MS.gene54838:CDS 30.0%
AACCTCGTAAGTTAAAATGT+AGG + chr2.1:9610391-9610410 MS.gene54838:intron 30.0%
AACTGTAAGGATTTCTTTGT+AGG - chr2.1:9610539-9610558 None:intergenic 30.0%
AAGATGAGAACTATTGTCAA+AGG + chr2.1:9611009-9611028 MS.gene54838:CDS 30.0%
AATCATTTGAGAAATGCAGA+AGG + chr2.1:9608248-9608267 MS.gene54838:CDS 30.0%
ACAAAATTGATGCCATTGAA+AGG + chr2.1:9608763-9608782 MS.gene54838:CDS 30.0%
ACAGTTTGAAGAACAAGTTA+GGG + chr2.1:9609914-9609933 MS.gene54838:CDS 30.0%
ACTGTAAGGATTTCTTTGTA+GGG - chr2.1:9610538-9610557 None:intergenic 30.0%
AGAATTTAAAAGCCAAGTGA+GGG + chr2.1:9609194-9609213 MS.gene54838:CDS 30.0%
AGGAGTTTAAATCAAAAGAG+AGG + chr2.1:9609046-9609065 MS.gene54838:CDS 30.0%
ATATTCTGATAACCATTGAG+GGG + chr2.1:9610418-9610437 MS.gene54838:intron 30.0%
ATCATTTGAGAAATGCAGAA+GGG + chr2.1:9608249-9608268 MS.gene54838:CDS 30.0%
CAATATTCTGATAACCATTG+AGG + chr2.1:9610416-9610435 MS.gene54838:intron 30.0%
CATTATCATCATATGGTGTT+GGG - chr2.1:9608141-9608160 None:intergenic 30.0%
GCAAAATTACTAAAATGCTC+AGG + chr2.1:9610711-9610730 MS.gene54838:intron 30.0%
GCAATTTGAAAGACAAGTAA+AGG + chr2.1:9609236-9609255 MS.gene54838:CDS 30.0%
GCATGTTAAAAAGAAGGTAA+AGG + chr2.1:9610882-9610901 MS.gene54838:CDS 30.0%
GGAGTTTAAATCAAAAGAGA+GGG + chr2.1:9609047-9609066 MS.gene54838:CDS 30.0%
GGATAACATTTCAAAACAGA+AGG + chr2.1:9608531-9608550 MS.gene54838:CDS 30.0%
TATGAAACTGTATCTGATGA+TGG + chr2.1:9611084-9611103 MS.gene54838:CDS 30.0%
TATTATAGGGGTAAACTGTA+AGG - chr2.1:9610552-9610571 None:intergenic 30.0%
TCAAAAGAGAGAGAATTTGA+AGG + chr2.1:9608931-9608950 MS.gene54838:CDS 30.0%
TCATCATCATCAATCACAAA+TGG - chr2.1:9611057-9611076 None:intergenic 30.0%
TCCTTAAATTGTCCTTTCAA+TGG - chr2.1:9608778-9608797 None:intergenic 30.0%
TGAGAATAAGTTCAAACTAC+TGG + chr2.1:9609866-9609885 MS.gene54838:CDS 30.0%
TGTGTGTGTGATATAAAAAC+TGG - chr2.1:9610208-9610227 None:intergenic 30.0%
TTAACGGCATTATCATCATA+TGG - chr2.1:9608148-9608167 None:intergenic 30.0%
TTCCATAAAGAGAGATATTG+AGG + chr2.1:9608300-9608319 MS.gene54838:CDS 30.0%
TTTCTTCATCAAACCACATA+AGG - chr2.1:9608107-9608126 None:intergenic 30.0%
TTTGATGAGGAAAACAAATC+GGG + chr2.1:9610023-9610042 MS.gene54838:CDS 30.0%
TTTGTTGAAGAAAAGAGTCA+AGG - chr2.1:9610779-9610798 None:intergenic 30.0%
! AATTGATTTATCAGTGGACA+TGG - chr2.1:9608194-9608213 None:intergenic 30.0%
! AATTTTTCCAACTTTGACTC+AGG - chr2.1:9609942-9609961 None:intergenic 30.0%
! ATATGATGATAATGCCGTTA+AGG + chr2.1:9608147-9608166 MS.gene54838:CDS 30.0%
! ATTATCATCATATGGTGTTG+GGG - chr2.1:9608140-9608159 None:intergenic 30.0%
! TTCGGAAATTGATTTATCAG+TGG - chr2.1:9608200-9608219 None:intergenic 30.0%
! TTTAGGGTTATTTGTGCATT+TGG + chr2.1:9610480-9610499 MS.gene54838:intron 30.0%
!! CAAAACAGAAGCATTTCAAA+AGG + chr2.1:9609100-9609119 MS.gene54838:CDS 30.0%
!! GATAAGTCAAAGTTTTGTGT+TGG + chr2.1:9607893-9607912 MS.gene54838:CDS 30.0%
!!! AACCTACATTTTAACTTACG+AGG - chr2.1:9610396-9610415 None:intergenic 30.0%
!!! TGCAAGTTCTTTTTTGAGTT+CGG - chr2.1:9608218-9608237 None:intergenic 30.0%
AAAAGACCATGAATTGGCAT+TGG + chr2.1:9610616-9610635 MS.gene54838:intron 35.0%
AGAACTCAAGACAAAAGAGT+TGG + chr2.1:9608492-9608511 MS.gene54838:CDS 35.0%
AGAAGCAATTTGAAGAACGA+TGG + chr2.1:9609826-9609845 MS.gene54838:CDS 35.0%
AGTGAAGGAGTTTGAATCAA+AGG + chr2.1:9609761-9609780 MS.gene54838:CDS 35.0%
CATCGAAAAAGACCATGAAT+TGG + chr2.1:9610610-9610629 MS.gene54838:intron 35.0%
CTCCTCAATATCTCTCTTTA+TGG - chr2.1:9608305-9608324 None:intergenic 35.0%
GAGAATTTAAAAGCCAAGTG+AGG + chr2.1:9609193-9609212 MS.gene54838:CDS 35.0%
GAGTCAAAATATAACCGTGT+AGG + chr2.1:9609264-9609283 MS.gene54838:CDS 35.0%
GATAACAACAGTTCCTTATG+TGG + chr2.1:9608091-9608110 MS.gene54838:CDS 35.0%
GCATTATCATCATATGGTGT+TGG - chr2.1:9608142-9608161 None:intergenic 35.0%
GCATTTCAAAAGGAGAATGA+AGG + chr2.1:9609110-9609129 MS.gene54838:CDS 35.0%
GCCATTGAAAGGACAATTTA+AGG + chr2.1:9608774-9608793 MS.gene54838:CDS 35.0%
TAAAGGTCAAGTGACTGATT+TGG + chr2.1:9609458-9609477 MS.gene54838:CDS 35.0%
TCAAAAGAGAAGCAACATGA+AGG + chr2.1:9609141-9609160 MS.gene54838:CDS 35.0%
TCAAAAGAGAAGCAACTTGA+AGG + chr2.1:9608637-9608656 MS.gene54838:CDS 35.0%
TCAAAAGAGAGGGAATTTGA+AGG + chr2.1:9609057-9609076 MS.gene54838:CDS 35.0%
TCATTTCGAAAGCCAAATGA+AGG + chr2.1:9609494-9609513 MS.gene54838:CDS 35.0%
TGAAAGACAAGTAAAGGAGT+TGG + chr2.1:9609242-9609261 MS.gene54838:CDS 35.0%
TGGTTTGATGAAGAAATCCA+AGG + chr2.1:9608111-9608130 MS.gene54838:CDS 35.0%
TTATCAAATGCCCTCTTAAC+TGG - chr2.1:9608076-9608095 None:intergenic 35.0%
TTCGATGACAATGTTAACGA+GGG - chr2.1:9610597-9610616 None:intergenic 35.0%
TTGAACGAGAGAGAACTTAA+AGG + chr2.1:9609441-9609460 MS.gene54838:CDS 35.0%
TTGTACAGGTGTGATGATTT+GGG - chr2.1:9610686-9610705 None:intergenic 35.0%
TTTCGATGACAATGTTAACG+AGG - chr2.1:9610598-9610617 None:intergenic 35.0%
TTTGTACAGGTGTGATGATT+TGG - chr2.1:9610687-9610706 None:intergenic 35.0%
! AAACCAAAGGTGAAGCATTT+GGG + chr2.1:9610949-9610968 MS.gene54838:CDS 35.0%
! AAGGATTTTGTAGCAAAGGA+AGG + chr2.1:9608427-9608446 MS.gene54838:CDS 35.0%
! TGGAAAAATTTGATGGACAC+CGG + chr2.1:9609952-9609971 MS.gene54838:CDS 35.0%
! TGTCAAGGATTTTGTAGCAA+AGG + chr2.1:9608423-9608442 MS.gene54838:CDS 35.0%
! TGTTTGATTTCTTTGCAGCA+GGG - chr2.1:9610930-9610949 None:intergenic 35.0%
! TTGGGCTGAGTCAATATTTT+TGG - chr2.1:9610668-9610687 None:intergenic 35.0%
! TTGTTTGATTTCTTTGCAGC+AGG - chr2.1:9610931-9610950 None:intergenic 35.0%
!! AAGAGAGGCATTTCAATAAC+TGG + chr2.1:9608725-9608744 MS.gene54838:CDS 35.0%
!! AGAGAGGCATTTCAATAACT+GGG + chr2.1:9608726-9608745 MS.gene54838:CDS 35.0%
!! GACTGATTTGGTATCAAAAC+AGG + chr2.1:9609470-9609489 MS.gene54838:CDS 35.0%
!! GATAATGGTGATGGAAATTG+TGG + chr2.1:9611123-9611142 MS.gene54838:CDS 35.0%
!!! AGTCAATATTTTTGGACACG+TGG - chr2.1:9610660-9610679 None:intergenic 35.0%
AAAGGAAGGACAGCTCTATT+TGG + chr2.1:9608441-9608460 MS.gene54838:CDS 40.0%
ACTGAACCAATGCCAATTCA+TGG - chr2.1:9610625-9610644 None:intergenic 40.0%
AGAACTATTGTCAAAGGTCC+TGG + chr2.1:9611015-9611034 MS.gene54838:CDS 40.0%
AGAAGCTCACAAGAAAATGC+AGG + chr2.1:9608384-9608403 MS.gene54838:CDS 40.0%
AGCAAGGTTTCCTAAGAAGA+GGG + chr2.1:9608036-9608055 MS.gene54838:CDS 40.0%
AGGAGTTTGAACCAAAAGAG+AGG + chr2.1:9609295-9609314 MS.gene54838:CDS 40.0%
ATCAGCTGGAATCTAAAGAG+AGG + chr2.1:9608710-9608729 MS.gene54838:CDS 40.0%
ATGATGTTCCTTTGTCAGCA+AGG + chr2.1:9608020-9608039 MS.gene54838:CDS 40.0%
CCAAAAGAGAGGGAATTTGA+AGG + chr2.1:9609306-9609325 MS.gene54838:CDS 40.0%
CCAAATTCACCCATGTTACA+GGG - chr2.1:9610507-9610526 None:intergenic 40.0%
CCAACTTGTAGACCAAATGA+AGG + chr2.1:9609026-9609045 MS.gene54838:CDS 40.0%
CCTGTAACATGGGTGAATTT+GGG + chr2.1:9610505-9610524 MS.gene54838:intron 40.0%
CCTTCATTTGGTCTACAAGT+TGG - chr2.1:9609029-9609048 None:intergenic 40.0%
GAAAGAGTTCCAGTCAAAAG+AGG + chr2.1:9609638-9609657 MS.gene54838:CDS 40.0%
GAAGCTCACAAGAAAATGCA+GGG + chr2.1:9608385-9608404 MS.gene54838:CDS 40.0%
GAAGGAGTTTGAATCAAAGG+AGG + chr2.1:9609764-9609783 MS.gene54838:CDS 40.0%
GAGATGAATGTGGCAGATAA+TGG + chr2.1:9611108-9611127 MS.gene54838:CDS 40.0%
GATGGAAATTGTGGTAGAGA+TGG + chr2.1:9611132-9611151 MS.gene54838:CDS 40.0%
GCAGTTTGAAAACCGAATCA+AGG + chr2.1:9608858-9608877 MS.gene54838:CDS 40.0%
GGAATTCAAAGGTCAAGTGA+AGG + chr2.1:9609746-9609765 MS.gene54838:CDS 40.0%
GGAATTTGAAAGCCAAGTGA+AGG + chr2.1:9608552-9608571 MS.gene54838:CDS 40.0%
GGAATTTGAAGGCCAAATGA+AGG + chr2.1:9609068-9609087 MS.gene54838:CDS 40.0%
GGACTACAAAGAAGAACAAG+TGG + chr2.1:9610970-9610989 MS.gene54838:CDS 40.0%
GGAGTTCAAAGGTCAAGTTA+AGG + chr2.1:9609788-9609807 MS.gene54838:CDS 40.0%
GGAGTTTGAACCAAAAGAGA+GGG + chr2.1:9609296-9609315 MS.gene54838:CDS 40.0%
GTAGTAGTATCCCTCTTCTT+AGG - chr2.1:9608049-9608068 None:intergenic 40.0%
GTTGAAGAAAAGAGTCAAGG+AGG - chr2.1:9610776-9610795 None:intergenic 40.0%
TACTACACTGCCAGTTAAGA+GGG + chr2.1:9608063-9608082 MS.gene54838:CDS 40.0%
TCAAAAGAGAAGCAGCATGA+AGG + chr2.1:9608889-9608908 MS.gene54838:CDS 40.0%
TCAAAAGAGGAGGAACTCAA+AGG + chr2.1:9609651-9609670 MS.gene54838:CDS 40.0%
TCAATTCGTGCTCCTTCAAT+CGG - chr2.1:9609425-9609444 None:intergenic 40.0%
TCCAAAGATTGGACTGTGTA+TGG + chr2.1:9611179-9611198 MS.gene54838:CDS 40.0%
TCCTGGGCATGTTAAAAAGA+AGG + chr2.1:9610876-9610895 MS.gene54838:CDS 40.0%
TCTAAAGAGAAGCAACTCGA+TGG + chr2.1:9608805-9608824 MS.gene54838:CDS 40.0%
TTAGGAAACCTTGCTGACAA+AGG - chr2.1:9608031-9608050 None:intergenic 40.0%
TTGACTCAAGCTCCTTCATT+TGG - chr2.1:9609125-9609144 None:intergenic 40.0%
TTGACTCAAGCTCCTTGATT+CGG - chr2.1:9608873-9608892 None:intergenic 40.0%
TTGACTCTAACTCCTTGACT+TGG - chr2.1:9608999-9609018 None:intergenic 40.0%
TTGATGCCAGTTCCTTCATT+TGG - chr2.1:9609083-9609102 None:intergenic 40.0%
TTGATTCAAGCTCCTTCAGT+TGG - chr2.1:9609593-9609612 None:intergenic 40.0%
TTGGTTCAAACTCCTTCACT+TGG - chr2.1:9609290-9609309 None:intergenic 40.0%
! AAAATTTGATGGACACCGGA+AGG + chr2.1:9609956-9609975 MS.gene54838:CDS 40.0%
! AATGTGGCAGATAATGGTGA+TGG + chr2.1:9611114-9611133 MS.gene54838:CDS 40.0%
! ACCTTCTTTTTAACATGCCC+AGG - chr2.1:9610880-9610899 None:intergenic 40.0%
! ATTCCTGTTGTTATTGCTCC+TGG + chr2.1:9610859-9610878 MS.gene54838:CDS 40.0%
! CAAACCAAAGGTGAAGCATT+TGG + chr2.1:9610948-9610967 MS.gene54838:CDS 40.0%
! CCTTCAAATTCCCTCTCTTT+TGG - chr2.1:9609060-9609079 None:intergenic 40.0%
! GCTGTTTGAAATCCAAGTCA+AGG + chr2.1:9608984-9609003 MS.gene54838:CDS 40.0%
! GTTTGATTTCTTTGCAGCAG+GGG - chr2.1:9610929-9610948 None:intergenic 40.0%
! TAGATTCCAGCTGATTCACT+TGG - chr2.1:9608705-9608724 None:intergenic 40.0%
! TTCCTGTTGTTATTGCTCCT+GGG + chr2.1:9610860-9610879 MS.gene54838:CDS 40.0%
!! ACTCAGGGCATTTGTTGTTA+AGG + chr2.1:9611206-9611225 MS.gene54838:CDS 40.0%
!! TGATGATGGTGAGATGAATG+TGG + chr2.1:9611098-9611117 MS.gene54838:CDS 40.0%
AAAGCCAAGTGAAGGAGCTA+GGG + chr2.1:9608560-9608579 MS.gene54838:CDS 45.0%
AAGGAGTTCCACGCAAAAGA+GGG + chr2.1:9609723-9609742 MS.gene54838:CDS 45.0%
ACAGGAATGCCAAGAACAAC+AGG - chr2.1:9610847-9610866 None:intergenic 45.0%
AGAATTTGAAGGCCAGGTGA+AGG + chr2.1:9608942-9608961 MS.gene54838:CDS 45.0%
AGAGAGAGAATTTGAAGGCC+AGG + chr2.1:9608936-9608955 MS.gene54838:CDS 45.0%
AGAGTTCCAGTCAAAAGAGG+AGG + chr2.1:9609641-9609660 MS.gene54838:CDS 45.0%
AGTCCCAAATGCTTCACCTT+TGG - chr2.1:9610955-9610974 None:intergenic 45.0%
CACACACAGTCAAGCTAAGT+TGG + chr2.1:9610224-9610243 MS.gene54838:intron 45.0%
CAGCAAGGTTTCCTAAGAAG+AGG + chr2.1:9608035-9608054 MS.gene54838:CDS 45.0%
CATGCATTACAAAAGCCGCA+TGG + chr2.1:9608603-9608622 MS.gene54838:CDS 45.0%
CCCAAATTCACCCATGTTAC+AGG - chr2.1:9610508-9610527 None:intergenic 45.0%
CCCTGTAACATGGGTGAATT+TGG + chr2.1:9610504-9610523 MS.gene54838:intron 45.0%
CGGATTCATGCTCCTTCAAT+CGG - chr2.1:9608663-9608682 None:intergenic 45.0%
CTACTACACTGCCAGTTAAG+AGG + chr2.1:9608062-9608081 MS.gene54838:CDS 45.0%
GAAAGACCTCCTGTTGTTCT+TGG + chr2.1:9610835-9610854 MS.gene54838:intron 45.0%
GAAGAAAAGAGTCAAGGAGG+AGG - chr2.1:9610773-9610792 None:intergenic 45.0%
GAAGGAGCTAGGGAATGATT+TGG + chr2.1:9608570-9608589 MS.gene54838:CDS 45.0%
GACTATTAAGTGCCCCTCAA+TGG - chr2.1:9610433-9610452 None:intergenic 45.0%
GATTTATCAGTGGACATGGC+AGG - chr2.1:9608190-9608209 None:intergenic 45.0%
GCAAAAGAGGGGGAATTCAA+AGG + chr2.1:9609735-9609754 MS.gene54838:CDS 45.0%
GCAACATGAAGGTCAAGTGA+AGG + chr2.1:9609152-9609171 MS.gene54838:CDS 45.0%
GCAAGATGAAGTCCGATTGA+AGG + chr2.1:9609410-9609429 MS.gene54838:CDS 45.0%
GCATTTCAATAACTGGGTGG+AGG + chr2.1:9608732-9608751 MS.gene54838:CDS 45.0%
GCATTTGGTCCCTGTAACAT+GGG + chr2.1:9610495-9610514 MS.gene54838:intron 45.0%
GCCATACACAGTCCAATCTT+TGG - chr2.1:9611183-9611202 None:intergenic 45.0%
GGAACTCAAAGGTCAACTGA+AGG + chr2.1:9609662-9609681 MS.gene54838:CDS 45.0%
GGAGTTTGAATCAAAGGAGG+AGG + chr2.1:9609767-9609786 MS.gene54838:CDS 45.0%
GTTGGAACTTCGTCAAGTCA+CGG + chr2.1:9608510-9608529 MS.gene54838:CDS 45.0%
TAGATTCCAGCTCCTTCACT+TGG - chr2.1:9608831-9608850 None:intergenic 45.0%
TAGATTTCAGCTCCTTCACC+TGG - chr2.1:9608957-9608976 None:intergenic 45.0%
TAGGGATCCTGAGTCAAAGT+TGG + chr2.1:9609932-9609951 MS.gene54838:CDS 45.0%
TCAAAGGAGGAGGAGTTCAA+AGG + chr2.1:9609777-9609796 MS.gene54838:CDS 45.0%
TCGACTCAAGCTCTTTCACT+TGG - chr2.1:9609383-9609402 None:intergenic 45.0%
TGAAGACCAAGTGAATCAGC+TGG + chr2.1:9608696-9608715 MS.gene54838:CDS 45.0%
TGAAGGCCAAATGAAGGAAC+TGG + chr2.1:9609074-9609093 MS.gene54838:CDS 45.0%
TGCATTTGGTCCCTGTAACA+TGG + chr2.1:9610494-9610513 MS.gene54838:intron 45.0%
! AGCGAAGGAACTGGTATTGA+TGG + chr2.1:9609332-9609351 MS.gene54838:CDS 45.0%
! GAGGCATTTCAATAACTGGG+TGG + chr2.1:9608729-9608748 MS.gene54838:CDS 45.0%
! TGAGTTCCTCCTCTTTTGAC+TGG - chr2.1:9609650-9609669 None:intergenic 45.0%
!! TTGGCATTGGTTCAGTGACA+CGG + chr2.1:9610629-9610648 MS.gene54838:intron 45.0%
AAGAGAAGCAGCATGAAGGC+CGG + chr2.1:9608893-9608912 MS.gene54838:CDS 50.0%
ACTCCTTCACTTGGCCTACA+CGG - chr2.1:9609281-9609300 None:intergenic 50.0%
ACTGTGTATGGCAGCACTCA+GGG + chr2.1:9611191-9611210 MS.gene54838:CDS 50.0%
AGGAGTTCCACGCAAAAGAG+GGG + chr2.1:9609724-9609743 MS.gene54838:CDS 50.0%
CATTCCCTAGCTCCTTCACT+TGG - chr2.1:9608567-9608586 None:intergenic 50.0%
CTCTCAACTCAGACTCCTTC+CGG - chr2.1:9609974-9609993 None:intergenic 50.0%
CTGATTCCAGCTCCTTCACT+CGG - chr2.1:9609551-9609570 None:intergenic 50.0%
GAAAGCCAAGTGAAGGAGCT+AGG + chr2.1:9608559-9608578 MS.gene54838:CDS 50.0%
GAAGGAGTTCCACGCAAAAG+AGG + chr2.1:9609722-9609741 MS.gene54838:CDS 50.0%
GCAACTTGAAGGCCGATTGA+AGG + chr2.1:9608648-9608667 MS.gene54838:CDS 50.0%
GCATTACAAAAGCCGCATGG+AGG + chr2.1:9608606-9608625 MS.gene54838:CDS 50.0%
GCATTTCGAGAGCCAACTGA+AGG + chr2.1:9609578-9609597 MS.gene54838:CDS 50.0%
GGAAGGACAGCTCTATTTGG+TGG + chr2.1:9608444-9608463 MS.gene54838:CDS 50.0%
GGAATGCCAAGAACAACAGG+AGG - chr2.1:9610844-9610863 None:intergenic 50.0%
GGAATTTGAAGGCGAAGCGA+AGG + chr2.1:9609317-9609336 MS.gene54838:CDS 50.0%
TAAAAGCCAAGTGAGGGAGC+TGG + chr2.1:9609200-9609219 MS.gene54838:CDS 50.0%
TAACCGTGTAGGCCAAGTGA+AGG + chr2.1:9609275-9609294 MS.gene54838:CDS 50.0%
TAGATTCCAGCTCCCTCACT+TGG - chr2.1:9609209-9609228 None:intergenic 50.0%
TGCCCAGGAGCAATAACAAC+AGG - chr2.1:9610865-9610884 None:intergenic 50.0%
TTCTTTGCAGCAGGGGCAAT+AGG - chr2.1:9610922-9610941 None:intergenic 50.0%
TTGACTCAAGCTCCTCCATG+CGG - chr2.1:9608621-9608640 None:intergenic 50.0%
TTGATGCAAGCTCCTTCACC+CGG - chr2.1:9608915-9608934 None:intergenic 50.0%
! AGGACAGCTCTATTTGGTGG+AGG + chr2.1:9608447-9608466 MS.gene54838:CDS 50.0%
! ATATGGTGTTGGGGACACCT+TGG - chr2.1:9608131-9608150 None:intergenic 50.0%
! TGAATTCCCCCTCTTTTGCG+TGG - chr2.1:9609734-9609753 None:intergenic 50.0%
AGAGAAGCAGCATGAAGGCC+GGG + chr2.1:9608894-9608913 MS.gene54838:CDS 55.0%
GACTGTGTATGGCAGCACTC+AGG + chr2.1:9611190-9611209 MS.gene54838:CDS 55.0%
GCAACATGAAGGCCGAGTGA+AGG + chr2.1:9609536-9609555 MS.gene54838:CDS 55.0%
GCAACTCGATGGCCAAGTGA+AGG + chr2.1:9608816-9608835 MS.gene54838:CDS 55.0%
GGAGTTCCACGCAAAAGAGG+GGG + chr2.1:9609725-9609744 MS.gene54838:CDS 55.0%
TGAAGGCGAAGCGAAGGAAC+TGG + chr2.1:9609323-9609342 MS.gene54838:CDS 55.0%
TTTGCAGCAGGGGCAATAGG+TGG - chr2.1:9610919-9610938 None:intergenic 55.0%
CGATGGCCAAGTGAAGGAGC+TGG + chr2.1:9608822-9608841 MS.gene54838:CDS 60.0%
GGTGCTTCTGAGCTGCTACC+AGG - chr2.1:9611036-9611055 None:intergenic 60.0%
TGAAGGCCGAGTGAAGGAGC+TGG + chr2.1:9609542-9609561 MS.gene54838:CDS 60.0%
GCAGCATGAAGGCCGGGTGA+AGG + chr2.1:9608900-9608919 MS.gene54838:CDS 65.0%


Chromosome Type Strat End Strand Name
chr2.1 gene 9607869 9611233 9607869 ID=MS.gene54838
chr2.1 mRNA 9607869 9611233 9607869 ID=MS.gene54838.t1;Parent=MS.gene54838
chr2.1 exon 9607869 9610044 9607869 ID=MS.gene54838.t1.exon1;Parent=MS.gene54838.t1
chr2.1 CDS 9607869 9610044 9607869 ID=cds.MS.gene54838.t1;Parent=MS.gene54838.t1
chr2.1 exon 9610836 9611233 9610836 ID=MS.gene54838.t1.exon2;Parent=MS.gene54838.t1
chr2.1 CDS 9610836 9611233 9610836 ID=cds.MS.gene54838.t1;Parent=MS.gene54838.t1
Gene Sequence

>MS.gene54838

ATGATGGATGTTGCTGAGGCTTCTGATAAGTCAAAGTTTTGTGTTGGTGATGATGATGAAGATCACTTAAATTTTAAATGGCTCACATCATTCGATAAAAAAACATCGCATTCAGCTTCACATGAAGACTTTGAATCTGAAGATGATGATGATGATGTTCCTTTGTCAGCAAGGTTTCCTAAGAAGAGGGATACTACTACACTGCCAGTTAAGAGGGCATTTGATAACAACAGTTCCTTATGTGGTTTGATGAAGAAATCCAAGGTGTCCCCAACACCATATGATGATAATGCCGTTAAGGACTACAATGATTATGTTCCTGCCATGTCCACTGATAAATCAATTTCCGAACTCAAAAAAGAACTTGCATTTATAGAAAAATCATTTGAGAAATGCAGAAGGGACATGCAAGTTGAAAAGAAGAGATTGCATTCCATAAAGAGAGATATTGAGGAGTGCTGCAGAGAACTTAAAAATAAGCAAAAGGAAATTAGTTATGTTGGAAGAATTAACGAAGAAGCTCACAAGAAAATGCAGGGAAAAATTGAAGAATGTGTCAAGGATTTTGTAGCAAAGGAAGGACAGCTCTATTTGGTGGAGGAATTGATTCGAGAGCGCAAGCAAGAACTCAAGACAAAAGAGTTGGAACTTCGTCAAGTCACGGATAACATTTCAAAACAGAAGGAATTTGAAAGCCAAGTGAAGGAGCTAGGGAATGATTTGGTATCAGAACACATGCATTACAAAAGCCGCATGGAGGAGCTTGAGTCAAAAGAGAAGCAACTTGAAGGCCGATTGAAGGAGCATGAATCCGAAGAAAAAGAATTTGAAGACCAAGTGAATCAGCTGGAATCTAAAGAGAGGCATTTCAATAACTGGGTGGAGGAGTTCAATACAAAATTGATGCCATTGAAAGGACAATTTAAGGAACTTGCTTCTAAAGAGAAGCAACTCGATGGCCAAGTGAAGGAGCTGGAATCTAAAAAGAAGCAGTTTGAAAACCGAATCAAGGAGCTTGAGTCAAAAGAGAAGCAGCATGAAGGCCGGGTGAAGGAGCTTGCATCAAAAGAGAGAGAATTTGAAGGCCAGGTGAAGGAGCTGAAATCTAAAAAGAAGCTGTTTGAAATCCAAGTCAAGGAGTTAGAGTCAAAAGAAAACCAACTTGTAGACCAAATGAAGGAGTTTAAATCAAAAGAGAGGGAATTTGAAGGCCAAATGAAGGAACTGGCATCAAAACAGAAGCATTTCAAAAGGAGAATGAAGGAGCTTGAGTCAAAAGAGAAGCAACATGAAGGTCAAGTGAAGGAGCGTGAATTAAAAGAGAGAGAATTTAAAAGCCAAGTGAGGGAGCTGGAATCTAAAAAGAAGCAATTTGAAAGACAAGTAAAGGAGTTGGAGTCAAAATATAACCGTGTAGGCCAAGTGAAGGAGTTTGAACCAAAAGAGAGGGAATTTGAAGGCGAAGCGAAGGAACTGGTATTGATGGTATTGAAACAGAAGCATTTAGAAAGCCAAGTGAAAGAGCTTGAGTCGAAAGCGAAGCAAGATGAAGTCCGATTGAAGGAGCACGAATTGAACGAGAGAGAACTTAAAGGTCAAGTGACTGATTTGGTATCAAAACAGGATCATTTCGAAAGCCAAATGAAGGAGCTTGAGTCAAAAGAGAAGCAACATGAAGGCCGAGTGAAGGAGCTGGAATCAGAAAAGAAGCATTTCGAGAGCCAACTGAAGGAGCTTGAATCAAAAGAAAATCAATTCAAAGAACAAATGAAAGAGTTCCAGTCAAAAGAGGAGGAACTCAAAGGTCAACTGAAGGAGTTTGAATCAAAAGAAAAGAAATTCAAAGAACAAATGAAGGAGTTCCACGCAAAAGAGGGGGAATTCAAAGGTCAAGTGAAGGAGTTTGAATCAAAGGAGGAGGAGTTCAAAGGTCAAGTTAAGGAACTCAAATCAAAAGAGAAGCAATTTGAAGAACGATGGAAAGAACTCGAGACAAATGAGAATAAGTTCAAACTACTGGTCAAAGAGCTCAAGTTAAACGAGAAACAGTTTGAAGAACAAGTTAGGGATCCTGAGTCAAAGTTGGAAAAATTTGATGGACACCGGAAGGAGTCTGAGTTGAGAGAAAAACAATATGAACCGTTAATAAAAGATTTTGATGAGGAAAACAAATCGGGTAAATGTTCTTATTCATCTAGTTTAATGATGTTGATATATTTAATAATCTGATCTACATTTTCTTAAAAAAATAATAATGATGATGTTAAAGTAGTATATCTTGCTCTTAGTCTTGACAAAAAAAATGTAGTGTATCTTAGTCAAGTTGACAAGCTTGTCCAGTTTTTATATCACACACACACACAGTCAAGCTAAGTTGGATTATATTTTTCAACCTTGATATTTAATGAATCTAAAATGCGAAAACCCCATAGATAAGTTTAATTATAAAATTATAGTTCTGCTAATGATAGATATGTATATTAATGTAGATTTAGTTTTTCAGGTAGATTGCAAATAGTGTAAACCTCGTAAGTTAAAATGTAGGTTCAATATTCTGATAACCATTGAGGGGCACTTAATAGTCTTATTAGTGCAACTATTTATAGTTTTATTTAGGGTTATTTGTGCATTTGGTCCCTGTAACATGGGTGAATTTGGGTTCTAGACCCTACAAAGAAATCCTTACAGTTTACCCCTATAATATTTGAACCCATTTATATTTAATCCCTCGTTAACATTGTCATCGAAAAAGACCATGAATTGGCATTGGTTCAGTGACACGGCACATCCACGTGTCCAAAAATATTGACTCAGCCCAAATCATCACACCTGTACAAATAATGCAAAATTACTAAAATGCTCAGGGACTAAAATCAAAATAAAAAACGTAAAAACAGATTTCCTCCTCCTTGACTCTTTTCTTCAACAAACCAGAACTCAATTGCAGTTTTTTTGTGAAAATAGCAGAAAGACCTCCTGTTGTTCTTGGCATTCCTGTTGTTATTGCTCCTGGGCATGTTAAAAAGAAGGTAAAGGTTACAGAAAGACCACCTATTGCCCCTGCTGCAAAGAAATCAAACAAACCAAAGGTGAAGCATTTGGGACTACAAAGAAGAACAAGTGGAAGACTACGCACAATCAAGATGAGAACTATTGTCAAAGGTCCTGGTAGCAGCTCAGAAGCACCATTTGTGATTGATGATGATGATGAGATGTATGAAACTGTATCTGATGATGGTGAGATGAATGTGGCAGATAATGGTGATGGAAATTGTGGTAGAGATGGTGAGCTGACTCAAGAAACAATTAATCCAAAGATTGGACTGTGTATGGCAGCACTCAGGGCATTTGTTGTTAAGGATTGA
Protein sequence

>MS.gene54838.t1

MMDVAEASDKSKFCVGDDDEDHLNFKWLTSFDKKTSHSASHEDFESEDDDDDVPLSARFPKKRDTTTLPVKRAFDNNSSLCGLMKKSKVSPTPYDDNAVKDYNDYVPAMSTDKSISELKKELAFIEKSFEKCRRDMQVEKKRLHSIKRDIEECCRELKNKQKEISYVGRINEEAHKKMQGKIEECVKDFVAKEGQLYLVEELIRERKQELKTKELELRQVTDNISKQKEFESQVKELGNDLVSEHMHYKSRMEELESKEKQLEGRLKEHESEEKEFEDQVNQLESKERHFNNWVEEFNTKLMPLKGQFKELASKEKQLDGQVKELESKKKQFENRIKELESKEKQHEGRVKELASKEREFEGQVKELKSKKKLFEIQVKELESKENQLVDQMKEFKSKEREFEGQMKELASKQKHFKRRMKELESKEKQHEGQVKERELKEREFKSQVRELESKKKQFERQVKELESKYNRVGQVKEFEPKEREFEGEAKELVLMVLKQKHLESQVKELESKAKQDEVRLKEHELNERELKGQVTDLVSKQDHFESQMKELESKEKQHEGRVKELESEKKHFESQLKELESKENQFKEQMKEFQSKEEELKGQLKEFESKEKKFKEQMKEFHAKEGEFKGQVKEFESKEEEFKGQVKELKSKEKQFEERWKELETNENKFKLLVKELKLNEKQFEEQVRDPESKLEKFDGHRKESELREKQYEPLIKDFDEENKSERPPVVLGIPVVIAPGHVKKKVKVTERPPIAPAAKKSNKPKVKHLGLQRRTSGRLRTIKMRTIVKGPGSSSEAPFVIDDDDEMYETVSDDGEMNVADNGDGNCGRDGELTQETINPKIGLCMAALRAFVVKD