Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene54935.t1 | XP_013455414.1 | 99 | 494 | 5 | 0 | 1 | 494 | 1 | 494 | 1.00E-272 | 948.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene54935.t1 | Q9FGN3 | 55.5 | 472 | 203 | 3 | 23 | 493 | 13 | 478 | 2.7e-144 | 513.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene54935.t1 | A0A072UUB0 | 99.0 | 494 | 5 | 0 | 1 | 494 | 1 | 494 | 7.5e-273 | 948.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050787 | MS.gene54935 | 0.839812 | 1.27E-57 | -1.69E-46 |
| MS.gene054473 | MS.gene54935 | 0.814057 | 1.87E-51 | -1.69E-46 |
| MS.gene055356 | MS.gene54935 | 0.809276 | 2.05E-50 | -1.69E-46 |
| MS.gene055358 | MS.gene54935 | 0.811773 | 5.92E-51 | -1.69E-46 |
| MS.gene057469 | MS.gene54935 | 0.815742 | 7.91E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene54935.t1 | MTR_4g036815 | 98.988 | 494 | 5 | 0 | 1 | 494 | 1 | 494 | 0.0 | 996 |
| MS.gene54935.t1 | MTR_3g408430 | 64.634 | 492 | 148 | 9 | 10 | 494 | 7 | 479 | 0.0 | 615 |
| MS.gene54935.t1 | MTR_2g021030 | 31.948 | 385 | 235 | 17 | 82 | 447 | 11 | 387 | 3.30e-25 | 108 |
| MS.gene54935.t1 | MTR_2g021030 | 28.774 | 212 | 111 | 9 | 189 | 392 | 256 | 435 | 9.32e-11 | 64.3 |
| MS.gene54935.t1 | MTR_2g021030 | 31.948 | 385 | 235 | 17 | 82 | 447 | 11 | 387 | 2.36e-24 | 107 |
| MS.gene54935.t1 | MTR_2g021030 | 27.239 | 268 | 153 | 11 | 189 | 447 | 256 | 490 | 1.30e-12 | 70.5 |
| MS.gene54935.t1 | MTR_1g114610 | 27.202 | 386 | 239 | 18 | 82 | 445 | 20 | 385 | 4.97e-15 | 77.4 |
| MS.gene54935.t1 | MTR_1g114610 | 30.918 | 207 | 113 | 8 | 261 | 464 | 91 | 270 | 3.71e-13 | 71.6 |
| MS.gene54935.t1 | MTR_4g013255 | 28.099 | 242 | 162 | 6 | 216 | 452 | 324 | 558 | 6.26e-15 | 77.8 |
| MS.gene54935.t1 | MTR_7g112570 | 22.727 | 484 | 240 | 15 | 82 | 452 | 49 | 511 | 4.56e-12 | 68.9 |
| MS.gene54935.t1 | MTR_7g112570 | 22.727 | 484 | 240 | 15 | 82 | 452 | 49 | 511 | 4.78e-12 | 68.6 |
| MS.gene54935.t1 | MTR_1g012520 | 25.538 | 325 | 179 | 12 | 189 | 451 | 202 | 525 | 5.70e-12 | 68.6 |
| MS.gene54935.t1 | MTR_7g112570 | 22.727 | 484 | 240 | 15 | 82 | 452 | 49 | 511 | 7.21e-12 | 68.2 |
| MS.gene54935.t1 | MTR_1g018790 | 24.331 | 411 | 235 | 15 | 82 | 430 | 64 | 460 | 5.37e-11 | 65.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene54935.t1 | AT5G07670 | 59.118 | 499 | 176 | 8 | 1 | 494 | 1 | 476 | 0.0 | 555 |
| MS.gene54935.t1 | AT5G51380 | 56.341 | 481 | 203 | 3 | 14 | 493 | 4 | 478 | 0.0 | 520 |
| MS.gene54935.t1 | AT5G51370 | 59.506 | 405 | 163 | 1 | 90 | 494 | 40 | 443 | 3.68e-161 | 464 |
| MS.gene54935.t1 | AT5G51370 | 57.729 | 317 | 133 | 1 | 90 | 406 | 40 | 355 | 7.65e-117 | 348 |
| MS.gene54935.t1 | AT4G15475 | 27.919 | 394 | 245 | 12 | 82 | 450 | 11 | 390 | 2.43e-22 | 100 |
| MS.gene54935.t1 | AT4G15475 | 26.364 | 330 | 201 | 12 | 132 | 452 | 199 | 495 | 2.64e-16 | 82.0 |
| MS.gene54935.t1 | AT5G23340 | 25.248 | 404 | 239 | 16 | 82 | 453 | 10 | 382 | 5.87e-15 | 77.0 |
| MS.gene54935.t1 | AT2G25490 | 25.253 | 297 | 186 | 10 | 189 | 451 | 216 | 510 | 3.95e-13 | 72.4 |
| MS.gene54935.t1 | AT2G25490 | 23.929 | 280 | 182 | 11 | 189 | 450 | 348 | 614 | 2.51e-11 | 66.6 |
| MS.gene54935.t1 | AT5G25350 | 26.190 | 378 | 217 | 16 | 81 | 416 | 57 | 414 | 4.44e-11 | 65.9 |
Find 112 sgRNAs with CRISPR-Local
Find 176 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGTTTCTTCAATGGAGAATT+AGG | 0.134701 | 4.3:+63226354 | None:intergenic |
| TTGATCAATGATTGAGAAAT+TGG | 0.141986 | 4.3:+63226203 | None:intergenic |
| TCCGGGACTCGATGAGTATT+TGG | 0.154157 | 4.3:-63225383 | MS.gene54935:CDS |
| GGATATTGGTTTGACGATTT+TGG | 0.163958 | 4.3:-63225614 | MS.gene54935:CDS |
| TTGAATATGTATATTGATTC+TGG | 0.183844 | 4.3:-63225922 | MS.gene54935:CDS |
| GGTTCGGTTGTTTCGGATAT+TGG | 0.212698 | 4.3:-63225628 | MS.gene54935:CDS |
| TATCTGGTAGATTGATTTAT+AGG | 0.229578 | 4.3:-63226029 | MS.gene54935:CDS |
| ACTTGAACCCTTCTCAAATT+AGG | 0.239059 | 4.3:+63225811 | None:intergenic |
| TGCTAGGGAGATTATTATTC+AGG | 0.242284 | 4.3:-63225269 | MS.gene54935:CDS |
| CCTGTTGAGGTTATTGATAA+TGG | 0.245467 | 4.3:-63225859 | MS.gene54935:CDS |
| GAACACGGTGGTCTGATTTA+TGG | 0.247875 | 4.3:-63226329 | MS.gene54935:CDS |
| GGAGAATTAGGGTTAGGGTT+AGG | 0.266907 | 4.3:+63226366 | None:intergenic |
| GTAAAATTGCTTTACTTAGA+AGG | 0.276039 | 4.3:-63224440 | MS.gene54935:CDS |
| GCAACAACGATTTGGTTTAA+AGG | 0.278209 | 4.3:+63226285 | None:intergenic |
| TTCACATTTCTCTGTGAATC+TGG | 0.289076 | 4.3:+63226132 | None:intergenic |
| TTCTTTGAGAGTAGTAAATA+AGG | 0.290782 | 4.3:+63224295 | None:intergenic |
| GAGAATTAGGGTTAGGGTTA+GGG | 0.296352 | 4.3:+63226367 | None:intergenic |
| AATCATGTTGATTTGATTCA+TGG | 0.312777 | 4.3:-63225994 | MS.gene54935:CDS |
| AAGTCTTGTGGGGATTAGTA+TGG | 0.317529 | 4.3:-63224234 | MS.gene54935:CDS |
| TGATCAATGATTGAGAAATT+GGG | 0.319273 | 4.3:+63226204 | None:intergenic |
| CTGTTGAGGTTATTGATAAT+GGG | 0.336909 | 4.3:-63225858 | MS.gene54935:CDS |
| AATCAACATGATTAAGATTA+GGG | 0.341888 | 4.3:+63226004 | None:intergenic |
| TCGGCTTTGCAACTGTTTGC+AGG | 0.351431 | 4.3:-63225219 | MS.gene54935:intron |
| GTGTTCTACATTGCAGGAAT+TGG | 0.354359 | 4.3:-63225746 | MS.gene54935:CDS |
| TGAAATGGGTTTGTTAAGTT+TGG | 0.356585 | 4.3:-63225776 | MS.gene54935:CDS |
| GGGTTAGTTGCTTTAGCTAA+TGG | 0.358130 | 4.3:-63225838 | MS.gene54935:CDS |
| GTTTCTTCAATGGAGAATTA+GGG | 0.363111 | 4.3:+63226355 | None:intergenic |
| GGAAGAAGTGATTTCGTATC+TGG | 0.363751 | 4.3:+63224260 | None:intergenic |
| GATCGATTCGGATTCGTGAT+TGG | 0.364905 | 4.3:-63226062 | MS.gene54935:CDS |
| ATTCTGGGTCGTCGCCGAAT+TGG | 0.370566 | 4.3:-63225906 | MS.gene54935:CDS |
| TTGCAGCAGCAACAACGATT+TGG | 0.372725 | 4.3:+63226277 | None:intergenic |
| AGATTATTATTCAGGATTGC+TGG | 0.374839 | 4.3:-63225261 | MS.gene54935:CDS |
| CTACTCTCAAAGAATTGAAA+TGG | 0.378081 | 4.3:-63224286 | MS.gene54935:CDS |
| AAATCAACATGATTAAGATT+AGG | 0.378177 | 4.3:+63226003 | None:intergenic |
| GATTGCTGGGGATTTGATAA+TGG | 0.380312 | 4.3:-63225247 | MS.gene54935:CDS |
| TTGTGAAGCTTGAGCTTTGT+GGG | 0.380521 | 4.3:-63225573 | MS.gene54935:CDS |
| TAAGAAGATTGATTTGAATC+CGG | 0.381569 | 4.3:-63225401 | MS.gene54935:CDS |
| ACAGAGAAATGTGAATTCAT+TGG | 0.382696 | 4.3:-63226124 | MS.gene54935:CDS |
| CCGGGACTCGATGAGTATTT+GGG | 0.383808 | 4.3:-63225382 | MS.gene54935:CDS |
| CTAATCCCCACAAGACTTGA+TGG | 0.388509 | 4.3:+63224239 | None:intergenic |
| TTCAATGGAGAATTAGGGTT+AGG | 0.390540 | 4.3:+63226360 | None:intergenic |
| CGTGTTCCTAGTTTCTTCAA+TGG | 0.391074 | 4.3:+63226345 | None:intergenic |
| TTGAGAAGGGTTCAAGTGAT+TGG | 0.391585 | 4.3:-63225805 | MS.gene54935:CDS |
| TTTCTGTTTGCAGGGTTGCT+AGG | 0.398905 | 4.3:-63225285 | MS.gene54935:CDS |
| TGAAGAGTGTTCTACATTGC+AGG | 0.404045 | 4.3:-63225752 | MS.gene54935:CDS |
| TTGGTTTAAAGGCTTTGATT+TGG | 0.408136 | 4.3:+63226296 | None:intergenic |
| TTTGCAAAAGTGTCAGTTGC+GGG | 0.408350 | 4.3:-63225332 | MS.gene54935:CDS |
| ATTGCTAACAACAGAAGGTT+TGG | 0.408544 | 4.3:-63224411 | MS.gene54935:CDS |
| TGAATATGTATATTGATTCT+GGG | 0.409312 | 4.3:-63225921 | MS.gene54935:CDS |
| TTCTGTTTGCAGGGTTGCTA+GGG | 0.414617 | 4.3:-63225284 | MS.gene54935:CDS |
| GGATTTGATAATGGCATGTT+CGG | 0.419974 | 4.3:-63225238 | MS.gene54935:CDS |
| GTTGAATTTACAAGGTCGTT+TGG | 0.420107 | 4.3:-63226088 | MS.gene54935:CDS |
| CTTGTGAAGCTTGAGCTTTG+TGG | 0.422001 | 4.3:-63225574 | MS.gene54935:CDS |
| GTGTAGTGATAATGTGTTAA+GGG | 0.429057 | 4.3:-63225713 | MS.gene54935:CDS |
| CTTCTTCCATCAAGTCTTGT+GGG | 0.431093 | 4.3:-63224245 | MS.gene54935:CDS |
| TCCTCACAATTAAACCAATT+CGG | 0.434096 | 4.3:+63225892 | None:intergenic |
| GAATTTCATCAGATAACAAA+AGG | 0.435440 | 4.3:+63226178 | None:intergenic |
| AGTGATTGGTGCTAGTGAAA+TGG | 0.438381 | 4.3:-63225791 | MS.gene54935:CDS |
| GTCGTTTGGTTCGATCGATT+CGG | 0.438610 | 4.3:-63226074 | MS.gene54935:CDS |
| CCATTATCAATAACCTCAAC+AGG | 0.455104 | 4.3:+63225859 | None:intergenic |
| AAGAAGATTGATTTGAATCC+GGG | 0.456191 | 4.3:-63225400 | MS.gene54935:CDS |
| GATCAATGATTGAGAAATTG+GGG | 0.464246 | 4.3:+63226205 | None:intergenic |
| GATTATTATTCAGGATTGCT+GGG | 0.464395 | 4.3:-63225260 | MS.gene54935:CDS |
| GCGGGATAAGAAGAGCGTTT+CGG | 0.467821 | 4.3:-63225314 | MS.gene54935:CDS |
| GTAAATAAGGTTGCAAGTGA+AGG | 0.475213 | 4.3:+63224308 | None:intergenic |
| TTGATGGGATTAAGGCGATT+GGG | 0.480218 | 4.3:-63225537 | MS.gene54935:CDS |
| GTGATTGGTGCTAGTGAAAT+GGG | 0.480614 | 4.3:-63225790 | MS.gene54935:CDS |
| TCAATGGAGAATTAGGGTTA+GGG | 0.480646 | 4.3:+63226361 | None:intergenic |
| TTTGATGGGATTAAGGCGAT+TGG | 0.483087 | 4.3:-63225538 | MS.gene54935:CDS |
| GCTTACATGAGACTACTCTA+AGG | 0.483154 | 4.3:+63224354 | None:intergenic |
| AGTGTAGTGATAATGTGTTA+AGG | 0.483866 | 4.3:-63225714 | MS.gene54935:CDS |
| CCCAAATACTCATCGAGTCC+CGG | 0.489216 | 4.3:+63225382 | None:intergenic |
| ATCATGTTGATTTGATTCAT+GGG | 0.489312 | 4.3:-63225993 | MS.gene54935:CDS |
| ATTCATTGGTTTGTAAAAGA+TGG | 0.495844 | 4.3:-63226110 | MS.gene54935:CDS |
| AGTTGACATTGTGTGATCAT+AGG | 0.504164 | 4.3:-63225492 | MS.gene54935:CDS |
| AAAAGATGGTTGAATTTACA+AGG | 0.506141 | 4.3:-63226096 | MS.gene54935:CDS |
| GGAGAATATGCTTCCTGTTG+AGG | 0.516115 | 4.3:-63225872 | MS.gene54935:CDS |
| TTCTTCCATCAAGTCTTGTG+GGG | 0.518577 | 4.3:-63224244 | MS.gene54935:CDS |
| AAATTGGTTGGGAATGTTGA+GGG | 0.518791 | 4.3:-63225658 | MS.gene54935:CDS |
| GCCGAATTGGTTTAATTGTG+AGG | 0.522553 | 4.3:-63225893 | MS.gene54935:CDS |
| ACTTCTTCCATCAAGTCTTG+TGG | 0.526263 | 4.3:-63224246 | MS.gene54935:CDS |
| CTTGAGCTTTGTGGGTGTGA+AGG | 0.531367 | 4.3:-63225565 | MS.gene54935:CDS |
| ATGGTTGTCCTAATTTGAGA+AGG | 0.537606 | 4.3:-63225819 | MS.gene54935:CDS |
| ATCATAGGATGGATGATGGA+TGG | 0.540837 | 4.3:-63225477 | MS.gene54935:CDS |
| TGGGAAGTGTTGTCAGATGT+TGG | 0.542314 | 4.3:-63225518 | MS.gene54935:CDS |
| TTGAGCTTTGTGGGTGTGAA+GGG | 0.551393 | 4.3:-63225564 | MS.gene54935:CDS |
| TGCTCATTGCTAACAACAGA+AGG | 0.553995 | 4.3:-63224416 | MS.gene54935:CDS |
| AAATGCAGCCTCTCAAGTGC+AGG | 0.555404 | 4.3:+63225352 | None:intergenic |
| GTTCTTGTCCTGCACTTGAG+AGG | 0.559400 | 4.3:-63225360 | MS.gene54935:CDS |
| AGTCTTGTGGGGATTAGTAT+GGG | 0.562954 | 4.3:-63224233 | MS.gene54935:CDS |
| GGGATTAGTATGGGAAAGAA+AGG | 0.563280 | 4.3:-63224224 | MS.gene54935:CDS |
| TGGTTGTCCTAATTTGAGAA+GGG | 0.574459 | 4.3:-63225818 | MS.gene54935:CDS |
| AATTCTCCATTGAAGAAACT+AGG | 0.579620 | 4.3:-63226351 | MS.gene54935:CDS |
| TGTGATCATAGGATGGATGA+TGG | 0.581367 | 4.3:-63225481 | MS.gene54935:CDS |
| TGGAGTCTGTAATACATTCG+TGG | 0.584695 | 4.3:-63224391 | MS.gene54935:CDS |
| AATTTCATCAGATAACAAAA+GGG | 0.589426 | 4.3:+63226179 | None:intergenic |
| TAAGGGGAATTGCGGCGTGT+GGG | 0.590970 | 4.3:-63225696 | MS.gene54935:CDS |
| GTCTGTAATACATTCGTGGA+AGG | 0.594822 | 4.3:-63224387 | MS.gene54935:CDS |
| TTAAGGGGAATTGCGGCGTG+TGG | 0.599283 | 4.3:-63225697 | MS.gene54935:CDS |
| GGATGATGGATGGATGGCTG+CGG | 0.600102 | 4.3:-63225467 | MS.gene54935:CDS |
| TGTAGTGATAATGTGTTAAG+GGG | 0.600472 | 4.3:-63225712 | MS.gene54935:CDS |
| GAAATTGGTTGGGAATGTTG+AGG | 0.606598 | 4.3:-63225659 | MS.gene54935:CDS |
| CTCTCAAAGAATTGAAATGG+AGG | 0.618145 | 4.3:-63224283 | MS.gene54935:CDS |
| TAGGATGGATGATGGATGGA+TGG | 0.622771 | 4.3:-63225473 | MS.gene54935:CDS |
| ATTTGCAAAAGTGTCAGTTG+CGG | 0.627786 | 4.3:-63225333 | MS.gene54935:CDS |
| TAATGTGTTAAGGGGAATTG+CGG | 0.643313 | 4.3:-63225704 | MS.gene54935:CDS |
| GACATTGTGTGATCATAGGA+TGG | 0.643629 | 4.3:-63225488 | MS.gene54935:CDS |
| ATTATTATTCAGGATTGCTG+GGG | 0.650156 | 4.3:-63225259 | MS.gene54935:CDS |
| CATTGAAGAAACTAGGAACA+CGG | 0.659350 | 4.3:-63226344 | MS.gene54935:CDS |
| ATTAGTATGGGAAAGAAAGG+CGG | 0.671112 | 4.3:-63224221 | MS.gene54935:CDS |
| GAAGTGTTGTCAGATGTTGG+AGG | 0.680445 | 4.3:-63225515 | MS.gene54935:CDS |
| TGAAGAAACTAGGAACACGG+TGG | 0.807458 | 4.3:-63226341 | MS.gene54935:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATTACACAATATAATTTTT+CGG | + | chr4.3:63225720-63225739 | None:intergenic | 10.0% |
| !! | CTTTAATCATATATGTATAT+TGG | - | chr4.3:63225757-63225776 | MS.gene54935:CDS | 15.0% |
| !! | GAAAAATTATATTGTGTAAT+TGG | - | chr4.3:63225719-63225738 | MS.gene54935:CDS | 15.0% |
| !!! | TCAATTTCTATATGTTTTTT+GGG | - | chr4.3:63226037-63226056 | MS.gene54935:CDS | 15.0% |
| !!! | TTCAATTTCTATATGTTTTT+TGG | - | chr4.3:63226036-63226055 | MS.gene54935:CDS | 15.0% |
| !! | AAATCAACATGATTAAGATT+AGG | + | chr4.3:63224613-63224632 | None:intergenic | 20.0% |
| !! | AATCAACATGATTAAGATTA+GGG | + | chr4.3:63224612-63224631 | None:intergenic | 20.0% |
| !! | AATTTCATCAGATAACAAAA+GGG | + | chr4.3:63224437-63224456 | None:intergenic | 20.0% |
| !! | ATATATGTATATTGGCAATA+TGG | - | chr4.3:63225765-63225784 | MS.gene54935:CDS | 20.0% |
| !!! | AGTAATTTTTTCTTTCAGTA+TGG | - | chr4.3:63225810-63225829 | MS.gene54935:CDS | 20.0% |
| !!! | TCATATTTTAACTTAACTCT+CGG | - | chr4.3:63225640-63225659 | MS.gene54935:CDS | 20.0% |
| !!! | TGAATATGTATATTGATTCT+GGG | - | chr4.3:63224692-63224711 | MS.gene54935:intron | 20.0% |
| !!! | TTGAATATGTATATTGATTC+TGG | - | chr4.3:63224691-63224710 | MS.gene54935:intron | 20.0% |
| ! | AAAAGATGGTTGAATTTACA+AGG | - | chr4.3:63224517-63224536 | MS.gene54935:intron | 25.0% |
| ! | GAATTTCATCAGATAACAAA+AGG | + | chr4.3:63224438-63224457 | None:intergenic | 25.0% |
| ! | GATTAAAGACATTTCAACAT+TGG | + | chr4.3:63225745-63225764 | None:intergenic | 25.0% |
| ! | GTAAAATTGCTTTACTTAGA+AGG | - | chr4.3:63226173-63226192 | MS.gene54935:CDS | 25.0% |
| ! | TACATTGGAAGTGATAAATT+TGG | - | chr4.3:63225575-63225594 | MS.gene54935:CDS | 25.0% |
| ! | TGATCAATGATTGAGAAATT+GGG | + | chr4.3:63224412-63224431 | None:intergenic | 25.0% |
| ! | TTGATCAATGATTGAGAAAT+TGG | + | chr4.3:63224413-63224432 | None:intergenic | 25.0% |
| !! | CATAACACAAATTAGTTTAC+GGG | - | chr4.3:63225663-63225682 | MS.gene54935:CDS | 25.0% |
| !! | GCATAACACAAATTAGTTTA+CGG | - | chr4.3:63225662-63225681 | MS.gene54935:CDS | 25.0% |
| !! | TATCTGGTAGATTGATTTAT+AGG | - | chr4.3:63224584-63224603 | MS.gene54935:intron | 25.0% |
| !! | TTCTTTGAGAGTAGTAAATA+AGG | + | chr4.3:63226321-63226340 | None:intergenic | 25.0% |
| !!! | AAATTAGTGTTTGATTTTCG+AGG | + | chr4.3:63224388-63224407 | None:intergenic | 25.0% |
| !!! | AATCATGTTGATTTGATTCA+TGG | - | chr4.3:63224619-63224638 | MS.gene54935:intron | 25.0% |
| !!! | ATCATGTTGATTTGATTCAT+GGG | - | chr4.3:63224620-63224639 | MS.gene54935:intron | 25.0% |
| !!! | ATTCATTGGTTTGTAAAAGA+TGG | - | chr4.3:63224503-63224522 | MS.gene54935:intron | 25.0% |
| !!! | ATTTTTTCTTTCAGTATGGT+TGG | - | chr4.3:63225814-63225833 | MS.gene54935:CDS | 25.0% |
| !!! | GAATTTGCAGATTTTGAAAT+TGG | - | chr4.3:63224939-63224958 | MS.gene54935:intron | 25.0% |
| !!! | TAAGAAGATTGATTTGAATC+CGG | - | chr4.3:63225212-63225231 | MS.gene54935:intron | 25.0% |
| AACCTTAAGTCTTAAGTTAG+AGG | + | chr4.3:63225925-63225944 | None:intergenic | 30.0% | |
| AATTCTCCATTGAAGAAACT+AGG | - | chr4.3:63224262-63224281 | MS.gene54935:CDS | 30.0% | |
| ACAGAGAAATGTGAATTCAT+TGG | - | chr4.3:63224489-63224508 | MS.gene54935:intron | 30.0% | |
| AGATTATTATTCAGGATTGC+TGG | - | chr4.3:63225352-63225371 | MS.gene54935:CDS | 30.0% | |
| AGTTTCTTCAATGGAGAATT+AGG | + | chr4.3:63224262-63224281 | None:intergenic | 30.0% | |
| ATGTATATTGGCAATATGGT+TGG | - | chr4.3:63225769-63225788 | MS.gene54935:CDS | 30.0% | |
| ATTATTATTCAGGATTGCTG+GGG | - | chr4.3:63225354-63225373 | MS.gene54935:CDS | 30.0% | |
| CTACTCTCAAAGAATTGAAA+TGG | - | chr4.3:63226327-63226346 | MS.gene54935:CDS | 30.0% | |
| CTTGTTGCAATATTGGAATA+AGG | + | chr4.3:63225976-63225995 | None:intergenic | 30.0% | |
| GATCAATGATTGAGAAATTG+GGG | + | chr4.3:63224411-63224430 | None:intergenic | 30.0% | |
| GATTATTATTCAGGATTGCT+GGG | - | chr4.3:63225353-63225372 | MS.gene54935:CDS | 30.0% | |
| GCAATATTGGAATAAGGAAA+AGG | + | chr4.3:63225970-63225989 | None:intergenic | 30.0% | |
| GTTTCTTCAATGGAGAATTA+GGG | + | chr4.3:63224261-63224280 | None:intergenic | 30.0% | |
| TCCTCACAATTAAACCAATT+CGG | + | chr4.3:63224724-63224743 | None:intergenic | 30.0% | |
| TGTATATTGGCAATATGGTT+GGG | - | chr4.3:63225770-63225789 | MS.gene54935:CDS | 30.0% | |
| TTGGAAGTGATAAATTTGGT+TGG | - | chr4.3:63225579-63225598 | MS.gene54935:CDS | 30.0% | |
| ! | AGTGTAGTGATAATGTGTTA+AGG | - | chr4.3:63224899-63224918 | MS.gene54935:intron | 30.0% |
| ! | CTGTTGAGGTTATTGATAAT+GGG | - | chr4.3:63224755-63224774 | MS.gene54935:intron | 30.0% |
| ! | GTGTAGTGATAATGTGTTAA+GGG | - | chr4.3:63224900-63224919 | MS.gene54935:intron | 30.0% |
| ! | TGTAGTGATAATGTGTTAAG+GGG | - | chr4.3:63224901-63224920 | MS.gene54935:intron | 30.0% |
| ! | TTGGTTTAAAGGCTTTGATT+TGG | + | chr4.3:63224320-63224339 | None:intergenic | 30.0% |
| !! | AAGAAGATTGATTTGAATCC+GGG | - | chr4.3:63225213-63225232 | MS.gene54935:intron | 30.0% |
| !! | ATTGATTGCTGTTCTTTTTC+AGG | - | chr4.3:63226147-63226166 | MS.gene54935:CDS | 30.0% |
| !! | GTATCAACTTGTTGCAATAT+TGG | + | chr4.3:63225983-63226002 | None:intergenic | 30.0% |
| !! | TGAAATGGGTTTGTTAAGTT+TGG | - | chr4.3:63224837-63224856 | MS.gene54935:intron | 30.0% |
| !!! | AAGGCGGCAAATTTTTTAAA+AGG | - | chr4.3:63226408-63226427 | MS.gene54935:CDS | 30.0% |
| !!! | ATTTTATGGTTCGGTTGTTT+CGG | - | chr4.3:63224978-63224997 | MS.gene54935:intron | 30.0% |
| !!! | GATTGGAACTTTGTTTTATC+TGG | - | chr4.3:63224568-63224587 | MS.gene54935:intron | 30.0% |
| !!! | TGCAGATTTTGAAATTGGTT+GGG | - | chr4.3:63224944-63224963 | MS.gene54935:intron | 30.0% |
| !!! | TTGCAGATTTTGAAATTGGT+TGG | - | chr4.3:63224943-63224962 | MS.gene54935:intron | 30.0% |
| AAATTGGTTGGGAATGTTGA+GGG | - | chr4.3:63224955-63224974 | MS.gene54935:intron | 35.0% | |
| ACTTGAACCCTTCTCAAATT+AGG | + | chr4.3:63224805-63224824 | None:intergenic | 35.0% | |
| AGTTGACATTGTGTGATCAT+AGG | - | chr4.3:63225121-63225140 | MS.gene54935:intron | 35.0% | |
| ATGGTTGTCCTAATTTGAGA+AGG | - | chr4.3:63224794-63224813 | MS.gene54935:intron | 35.0% | |
| ATTAGTATGGGAAAGAAAGG+CGG | - | chr4.3:63226392-63226411 | MS.gene54935:CDS | 35.0% | |
| ATTGCTAACAACAGAAGGTT+TGG | - | chr4.3:63226202-63226221 | MS.gene54935:CDS | 35.0% | |
| CACCTCTAACTTAAGACTTA+AGG | - | chr4.3:63225920-63225939 | MS.gene54935:CDS | 35.0% | |
| CATTGAAGAAACTAGGAACA+CGG | - | chr4.3:63224269-63224288 | MS.gene54935:CDS | 35.0% | |
| CCATTATCAATAACCTCAAC+AGG | + | chr4.3:63224757-63224776 | None:intergenic | 35.0% | |
| CCTGTTGAGGTTATTGATAA+TGG | - | chr4.3:63224754-63224773 | MS.gene54935:intron | 35.0% | |
| CTCTCAAAGAATTGAAATGG+AGG | - | chr4.3:63226330-63226349 | MS.gene54935:CDS | 35.0% | |
| GATTACAGTCACTTCTATGT+GGG | + | chr4.3:63226102-63226121 | None:intergenic | 35.0% | |
| GTAAATAAGGTTGCAAGTGA+AGG | + | chr4.3:63226308-63226327 | None:intergenic | 35.0% | |
| GTATATTGGCAATATGGTTG+GGG | - | chr4.3:63225771-63225790 | MS.gene54935:CDS | 35.0% | |
| GTTGAATTTACAAGGTCGTT+TGG | - | chr4.3:63224525-63224544 | MS.gene54935:intron | 35.0% | |
| TAAGGTTGTAGACTAGAACA+AGG | - | chr4.3:63225938-63225957 | MS.gene54935:CDS | 35.0% | |
| TAATGTGTTAAGGGGAATTG+CGG | - | chr4.3:63224909-63224928 | MS.gene54935:intron | 35.0% | |
| TATATTGGCAATATGGTTGG+GGG | - | chr4.3:63225772-63225791 | MS.gene54935:CDS | 35.0% | |
| TCAATGGAGAATTAGGGTTA+GGG | + | chr4.3:63224255-63224274 | None:intergenic | 35.0% | |
| TGATTACAGTCACTTCTATG+TGG | + | chr4.3:63226103-63226122 | None:intergenic | 35.0% | |
| TGCTAGGGAGATTATTATTC+AGG | - | chr4.3:63225344-63225363 | MS.gene54935:CDS | 35.0% | |
| TGGTTGTCCTAATTTGAGAA+GGG | - | chr4.3:63224795-63224814 | MS.gene54935:intron | 35.0% | |
| TTCAATGGAGAATTAGGGTT+AGG | + | chr4.3:63224256-63224275 | None:intergenic | 35.0% | |
| TTCACATTTCTCTGTGAATC+TGG | + | chr4.3:63224484-63224503 | None:intergenic | 35.0% | |
| TTCTTTCAGTATGGTTGGAA+TGG | - | chr4.3:63225860-63225879 | MS.gene54935:CDS | 35.0% | |
| ! | ACTATACTGTCTAGAACTTG+TGG | - | chr4.3:63225459-63225478 | MS.gene54935:CDS | 35.0% |
| ! | TGTTGAGGGATTTTATGGTT+CGG | - | chr4.3:63224969-63224988 | MS.gene54935:intron | 35.0% |
| !! | ATTTGCAAAAGTGTCAGTTG+CGG | - | chr4.3:63225280-63225299 | MS.gene54935:CDS | 35.0% |
| !! | GCAACAACGATTTGGTTTAA+AGG | + | chr4.3:63224331-63224350 | None:intergenic | 35.0% |
| !! | GGATTTGATAATGGCATGTT+CGG | - | chr4.3:63225375-63225394 | MS.gene54935:CDS | 35.0% |
| !!! | GGATATTGGTTTGACGATTT+TGG | - | chr4.3:63224999-63225018 | MS.gene54935:intron | 35.0% |
| !!! | TTTTGGGTCTTGTTTGAAGT+TGG | - | chr4.3:63226053-63226072 | MS.gene54935:CDS | 35.0% |
| AACTAACGCTCAACACATCA+TGG | + | chr4.3:63225545-63225564 | None:intergenic | 40.0% | |
| AATTCAACACACAGTATCCC+AGG | + | chr4.3:63225697-63225716 | None:intergenic | 40.0% | |
| ACTTCTTCCATCAAGTCTTG+TGG | - | chr4.3:63226367-63226386 | MS.gene54935:CDS | 40.0% | |
| ATATTGGCAATATGGTTGGG+GGG | - | chr4.3:63225773-63225792 | MS.gene54935:CDS | 40.0% | |
| ATTCAACACACAGTATCCCA+GGG | + | chr4.3:63225696-63225715 | None:intergenic | 40.0% | |
| CACAAATTAGTCCATCACCA+GGG | + | chr4.3:63225619-63225638 | None:intergenic | 40.0% | |
| CGTGTTCCTAGTTTCTTCAA+TGG | + | chr4.3:63224271-63224290 | None:intergenic | 40.0% | |
| CTTGCAATCGTCAATCAAAC+AGG | + | chr4.3:63225494-63225513 | None:intergenic | 40.0% | |
| GAAATTGGTTGGGAATGTTG+AGG | - | chr4.3:63224954-63224973 | MS.gene54935:intron | 40.0% | |
| GACATTGTGTGATCATAGGA+TGG | - | chr4.3:63225125-63225144 | MS.gene54935:intron | 40.0% | |
| GAGAATTAGGGTTAGGGTTA+GGG | + | chr4.3:63224249-63224268 | None:intergenic | 40.0% | |
| GATTGCTGGGGATTTGATAA+TGG | - | chr4.3:63225366-63225385 | MS.gene54935:CDS | 40.0% | |
| GCTTACATGAGACTACTCTA+AGG | + | chr4.3:63226262-63226281 | None:intergenic | 40.0% | |
| GGAAGAAGTGATTTCGTATC+TGG | + | chr4.3:63226356-63226375 | None:intergenic | 40.0% | |
| GTCTGTAATACATTCGTGGA+AGG | - | chr4.3:63226226-63226245 | MS.gene54935:CDS | 40.0% | |
| GTGTTCTACATTGCAGGAAT+TGG | - | chr4.3:63224867-63224886 | MS.gene54935:intron | 40.0% | |
| TAGTTGTCAATGCGCTACAT+TGG | - | chr4.3:63225560-63225579 | MS.gene54935:CDS | 40.0% | |
| TGCTCATTGCTAACAACAGA+AGG | - | chr4.3:63226197-63226216 | MS.gene54935:CDS | 40.0% | |
| TGGAGTCTGTAATACATTCG+TGG | - | chr4.3:63226222-63226241 | MS.gene54935:CDS | 40.0% | |
| TGTGATCATAGGATGGATGA+TGG | - | chr4.3:63225132-63225151 | MS.gene54935:intron | 40.0% | |
| TTGAGAAGGGTTCAAGTGAT+TGG | - | chr4.3:63224808-63224827 | MS.gene54935:intron | 40.0% | |
| TTGATGGGATTAAGGCGATT+GGG | - | chr4.3:63225076-63225095 | MS.gene54935:intron | 40.0% | |
| TTGCAACTGTTTGCAGGTAA+TGG | - | chr4.3:63225400-63225419 | MS.gene54935:CDS | 40.0% | |
| TTTGATGGGATTAAGGCGAT+TGG | - | chr4.3:63225075-63225094 | MS.gene54935:intron | 40.0% | |
| ! | AAGTCTTGTGGGGATTAGTA+TGG | - | chr4.3:63226379-63226398 | MS.gene54935:CDS | 40.0% |
| ! | AGTCTTGTGGGGATTAGTAT+GGG | - | chr4.3:63226380-63226399 | MS.gene54935:CDS | 40.0% |
| ! | CTTCTTCCATCAAGTCTTGT+GGG | - | chr4.3:63226368-63226387 | MS.gene54935:CDS | 40.0% |
| ! | GCCGAATTGGTTTAATTGTG+AGG | - | chr4.3:63224720-63224739 | MS.gene54935:intron | 40.0% |
| ! | GGGAATGTTGAGGGATTTTA+TGG | - | chr4.3:63224964-63224983 | MS.gene54935:intron | 40.0% |
| ! | GGGATTAGTATGGGAAAGAA+AGG | - | chr4.3:63226389-63226408 | MS.gene54935:CDS | 40.0% |
| ! | TTCTTCCATCAAGTCTTGTG+GGG | - | chr4.3:63226369-63226388 | MS.gene54935:CDS | 40.0% |
| ! | TTGTGAAGCTTGAGCTTTGT+GGG | - | chr4.3:63225040-63225059 | MS.gene54935:intron | 40.0% |
| !! | AGGGAGTTTTGATGGGATTA+AGG | - | chr4.3:63225068-63225087 | MS.gene54935:intron | 40.0% |
| !! | AGTGATTGGTGCTAGTGAAA+TGG | - | chr4.3:63224822-63224841 | MS.gene54935:intron | 40.0% |
| !! | ATCATAGGATGGATGATGGA+TGG | - | chr4.3:63225136-63225155 | MS.gene54935:intron | 40.0% |
| !! | GGGTTAGTTGCTTTAGCTAA+TGG | - | chr4.3:63224775-63224794 | MS.gene54935:intron | 40.0% |
| !! | GTGATTGGTGCTAGTGAAAT+GGG | - | chr4.3:63224823-63224842 | MS.gene54935:intron | 40.0% |
| !! | GTGGGTTAGACGACTAAAAT+TGG | + | chr4.3:63226084-63226103 | None:intergenic | 40.0% |
| !! | TGAAGAGTGTTCTACATTGC+AGG | - | chr4.3:63224861-63224880 | MS.gene54935:intron | 40.0% |
| !! | TTTGCAAAAGTGTCAGTTGC+GGG | - | chr4.3:63225281-63225300 | MS.gene54935:CDS | 40.0% |
| !!! | GGCTTTGTTTTCTGTTTGCA+GGG | - | chr4.3:63225320-63225339 | MS.gene54935:CDS | 40.0% |
| !!! | TTTTGGCTCAAGGTTGTAAG+AGG | - | chr4.3:63225016-63225035 | MS.gene54935:intron | 40.0% |
| CCACAAATTAGTCCATCACC+AGG | + | chr4.3:63225620-63225639 | None:intergenic | 45.0% | |
| CTAATCCCCACAAGACTTGA+TGG | + | chr4.3:63226377-63226396 | None:intergenic | 45.0% | |
| CTTGTGAAGCTTGAGCTTTG+TGG | - | chr4.3:63225039-63225058 | MS.gene54935:intron | 45.0% | |
| GAACACGGTGGTCTGATTTA+TGG | - | chr4.3:63224284-63224303 | MS.gene54935:CDS | 45.0% | |
| GGAGAATATGCTTCCTGTTG+AGG | - | chr4.3:63224741-63224760 | MS.gene54935:intron | 45.0% | |
| GGAGAATTAGGGTTAGGGTT+AGG | + | chr4.3:63224250-63224269 | None:intergenic | 45.0% | |
| TGAAGAAACTAGGAACACGG+TGG | - | chr4.3:63224272-63224291 | MS.gene54935:CDS | 45.0% | |
| TTCTGTTTGCAGGGTTGCTA+GGG | - | chr4.3:63225329-63225348 | MS.gene54935:CDS | 45.0% | |
| TTGCAGCAGCAACAACGATT+TGG | + | chr4.3:63224339-63224358 | None:intergenic | 45.0% | |
| TTTCTGTTTGCAGGGTTGCT+AGG | - | chr4.3:63225328-63225347 | MS.gene54935:CDS | 45.0% | |
| ! | GGTTCGGTTGTTTCGGATAT+TGG | - | chr4.3:63224985-63225004 | MS.gene54935:intron | 45.0% |
| ! | GTCGTTTGGTTCGATCGATT+CGG | - | chr4.3:63224539-63224558 | MS.gene54935:intron | 45.0% |
| ! | TTGAGCTTTGTGGGTGTGAA+GGG | - | chr4.3:63225049-63225068 | MS.gene54935:intron | 45.0% |
| !! | CCTGGTGATGGACTAATTTG+TGG | - | chr4.3:63225617-63225636 | MS.gene54935:CDS | 45.0% |
| !! | GAAGTGTTGTCAGATGTTGG+AGG | - | chr4.3:63225098-63225117 | MS.gene54935:intron | 45.0% |
| !! | GATCGATTCGGATTCGTGAT+TGG | - | chr4.3:63224551-63224570 | MS.gene54935:intron | 45.0% |
| !! | GGTGTGAAGGGAGTTTTGAT+GGG | - | chr4.3:63225061-63225080 | MS.gene54935:intron | 45.0% |
| !! | TAGGATGGATGATGGATGGA+TGG | - | chr4.3:63225140-63225159 | MS.gene54935:intron | 45.0% |
| !! | TGGGAAGTGTTGTCAGATGT+TGG | - | chr4.3:63225095-63225114 | MS.gene54935:intron | 45.0% |
| !!! | CGGCTTTGTTTTCTGTTTGC+AGG | - | chr4.3:63225319-63225338 | MS.gene54935:CDS | 45.0% |
| !!! | GGTTTGACGATTTTGGCTCA+AGG | - | chr4.3:63225006-63225025 | MS.gene54935:intron | 45.0% |
| AAATGCAGCCTCTCAAGTGC+AGG | + | chr4.3:63225264-63225283 | None:intergenic | 50.0% | |
| ACACACAGTATCCCAGGGAA+AGG | + | chr4.3:63225691-63225710 | None:intergenic | 50.0% | |
| CACACAGTATCCCAGGGAAA+GGG | + | chr4.3:63225690-63225709 | None:intergenic | 50.0% | |
| CCCAAATACTCATCGAGTCC+CGG | + | chr4.3:63225234-63225253 | None:intergenic | 50.0% | |
| CCGGGACTCGATGAGTATTT+GGG | - | chr4.3:63225231-63225250 | MS.gene54935:CDS | 50.0% | |
| GTTCTTGTCCTGCACTTGAG+AGG | - | chr4.3:63225253-63225272 | MS.gene54935:CDS | 50.0% | |
| TCCGGGACTCGATGAGTATT+TGG | - | chr4.3:63225230-63225249 | MS.gene54935:CDS | 50.0% | |
| TCGGCTTTGCAACTGTTTGC+AGG | - | chr4.3:63225394-63225413 | MS.gene54935:CDS | 50.0% | |
| ! | CTTGAGCTTTGTGGGTGTGA+AGG | - | chr4.3:63225048-63225067 | MS.gene54935:intron | 50.0% |
| !! | GCGGGATAAGAAGAGCGTTT+CGG | - | chr4.3:63225299-63225318 | MS.gene54935:CDS | 50.0% |
| !! | GGGTGTGAAGGGAGTTTTGA+TGG | - | chr4.3:63225060-63225079 | MS.gene54935:intron | 50.0% |
| AGTTTACGGGTCCCTTTCCC+TGG | - | chr4.3:63225676-63225695 | MS.gene54935:CDS | 55.0% | |
| ATTCTGGGTCGTCGCCGAAT+TGG | - | chr4.3:63224707-63224726 | MS.gene54935:intron | 55.0% | |
| CCATCACCAGGGATCGAACT+CGG | + | chr4.3:63225608-63225627 | None:intergenic | 55.0% | |
| GTTTACGGGTCCCTTTCCCT+GGG | - | chr4.3:63225677-63225696 | MS.gene54935:CDS | 55.0% | |
| TAAGGGGAATTGCGGCGTGT+GGG | - | chr4.3:63224917-63224936 | MS.gene54935:intron | 55.0% | |
| TGGTATCCGAGTTCGATCCC+TGG | - | chr4.3:63225599-63225618 | MS.gene54935:CDS | 55.0% | |
| TTAAGGGGAATTGCGGCGTG+TGG | - | chr4.3:63224916-63224935 | MS.gene54935:intron | 55.0% | |
| !! | GGATGATGGATGGATGGCTG+CGG | - | chr4.3:63225146-63225165 | MS.gene54935:intron | 55.0% |
| CCGAGTTCGATCCCTGGTGA+TGG | - | chr4.3:63225605-63225624 | MS.gene54935:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.3 | gene | 63224199 | 63226436 | 63224199 | ID=MS.gene54935 |
| chr4.3 | mRNA | 63224199 | 63226436 | 63224199 | ID=MS.gene54935.t1;Parent=MS.gene54935 |
| chr4.3 | exon | 63225220 | 63226436 | 63225220 | ID=MS.gene54935.t1.exon1;Parent=MS.gene54935.t1 |
| chr4.3 | CDS | 63225220 | 63226436 | 63225220 | ID=cds.MS.gene54935.t1;Parent=MS.gene54935.t1 |
| chr4.3 | exon | 63224199 | 63224466 | 63224199 | ID=MS.gene54935.t1.exon2;Parent=MS.gene54935.t1 |
| chr4.3 | CDS | 63224199 | 63224466 | 63224199 | ID=cds.MS.gene54935.t1;Parent=MS.gene54935.t1 |
| Gene Sequence |
| Protein sequence |
