Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene55664.t1 | XP_003600584.1 | 67.3 | 278 | 78 | 2 | 36 | 313 | 62 | 326 | 2.00E-88 | 335.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene55664.t1 | G7J778 | 67.3 | 278 | 78 | 2 | 36 | 313 | 62 | 326 | 1.5e-88 | 335.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049254 | MS.gene55664 | 0.805766 | 1.14E-49 | -1.69E-46 |
| MS.gene049652 | MS.gene55664 | 0.805864 | 1.09E-49 | -1.69E-46 |
| MS.gene05060 | MS.gene55664 | 0.803211 | 3.89E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene55664.t1 | MTR_3g063950 | 66.783 | 286 | 82 | 2 | 28 | 313 | 54 | 326 | 1.05e-117 | 342 |
| MS.gene55664.t1 | MTR_3g063940 | 56.849 | 292 | 105 | 5 | 27 | 311 | 52 | 329 | 4.19e-93 | 280 |
| MS.gene55664.t1 | MTR_3g063940 | 50.450 | 222 | 89 | 4 | 27 | 241 | 52 | 259 | 4.04e-53 | 175 |
| MS.gene55664.t1 | MTR_7g114660 | 44.706 | 255 | 89 | 7 | 62 | 306 | 175 | 387 | 3.19e-48 | 166 |
| MS.gene55664.t1 | MTR_8g465010 | 44.882 | 254 | 81 | 8 | 63 | 306 | 178 | 382 | 5.49e-48 | 165 |
| MS.gene55664.t1 | MTR_8g031500 | 60.870 | 69 | 26 | 1 | 238 | 306 | 275 | 342 | 9.97e-17 | 80.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene55664.t1 | AT1G54520 | 41.593 | 226 | 90 | 6 | 81 | 306 | 205 | 388 | 5.10e-39 | 142 |
Find 67 sgRNAs with CRISPR-Local
Find 382 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACTTGCACTTGGTGTCATTT+TGG | 0.223640 | 3.3:-57551437 | MS.gene55664:CDS |
| CTTTGCAGGTGGATCTTAAA+AGG | 0.274049 | 3.3:-57549448 | MS.gene55664:intron |
| TTCAGGCTGGTGAGGTACTA+TGG | 0.302452 | 3.3:-57546929 | MS.gene55664:intron |
| GTTGTCTAAGGTTGGAATCT+TGG | 0.323997 | 3.3:-57551215 | MS.gene55664:intron |
| GAAGGGAGCTGAATATTTAA+AGG | 0.344002 | 3.3:-57547099 | MS.gene55664:CDS |
| TATTCAGCTCCCTTCATGTT+AGG | 0.362444 | 3.3:+57547107 | None:intergenic |
| CCCTTTCTTCAATTGATAGT+TGG | 0.380058 | 3.3:+57549396 | None:intergenic |
| CTTATGTTAGGTAACAATAT+TGG | 0.386874 | 3.3:-57547156 | MS.gene55664:intron |
| AGTTACTGTGCTCAAGCTTC+AGG | 0.387740 | 3.3:-57551380 | MS.gene55664:intron |
| AGCATGTTTCTCCACCCTCC+TGG | 0.401006 | 3.3:+57549423 | None:intergenic |
| AATTCGTCTTGTGTTCAGTT+TGG | 0.403648 | 3.3:-57549706 | MS.gene55664:CDS |
| TTCTTCTTGGTACTTGCACT+TGG | 0.418870 | 3.3:-57551448 | MS.gene55664:CDS |
| TAAACAGCTCACACCTTCCT+TGG | 0.423872 | 3.3:+57551129 | None:intergenic |
| GGGTTTCATCCTCTCTCTGT+GGG | 0.434025 | 3.3:+57546904 | None:intergenic |
| AACTGAACACAAGACGAATT+CGG | 0.442390 | 3.3:+57549709 | None:intergenic |
| ATCTCCCTAGCTTGTGTGAT+GGG | 0.449495 | 3.3:-57549752 | MS.gene55664:CDS |
| ATTCAAGTTCTCGACATGTA+AGG | 0.451638 | 3.3:-57551543 | MS.gene55664:CDS |
| ACCAACTATCAATTGAAGAA+AGG | 0.462903 | 3.3:-57549397 | MS.gene55664:CDS |
| GAAACTTGAGGATGAGGATG+AGG | 0.467659 | 3.3:+57551597 | None:intergenic |
| CCAACTATCAATTGAAGAAA+GGG | 0.475889 | 3.3:-57549396 | MS.gene55664:CDS |
| TCTAAGGTTGGAATCTTGGA+TGG | 0.480043 | 3.3:-57551211 | MS.gene55664:intron |
| ACTTGAATACCTTGTGGATG+AGG | 0.484874 | 3.3:+57551558 | None:intergenic |
| CAATACAAAGGGATCTAACT+AGG | 0.489233 | 3.3:-57551177 | MS.gene55664:CDS |
| ACACAAGACGAATTCGGAAT+CGG | 0.514544 | 3.3:+57549715 | None:intergenic |
| GTTGGAATCTTGGATGGGAT+GGG | 0.516919 | 3.3:-57551205 | MS.gene55664:CDS |
| GGTTGGAATCTTGGATGGGA+TGG | 0.518371 | 3.3:-57551206 | MS.gene55664:CDS |
| CATGTAAGGGCACAACATCA+TGG | 0.525179 | 3.3:-57551529 | MS.gene55664:CDS |
| ACAATATTGGTAGCTACTAA+AGG | 0.530785 | 3.3:-57547143 | MS.gene55664:CDS |
| CATGGGAATGGTACCGCTGA+TGG | 0.536087 | 3.3:-57551511 | MS.gene55664:CDS |
| TTCATAGACTTAGCTAGCTG+AGG | 0.537869 | 3.3:+57546852 | None:intergenic |
| ACAGCTCACACCTTCCTTGG+AGG | 0.537908 | 3.3:+57551132 | None:intergenic |
| GAGGATGAAACCCTTTCAGA+TGG | 0.539392 | 3.3:-57546894 | MS.gene55664:CDS |
| ACTGAAGAAACTTGAGGATG+AGG | 0.542158 | 3.3:+57551591 | None:intergenic |
| TGCTAAACCGATCATAACTC+TGG | 0.546715 | 3.3:+57549312 | None:intergenic |
| GAAATTCTTTCAGGCTGGTG+AGG | 0.547725 | 3.3:-57546937 | MS.gene55664:intron |
| ATTGACCCATCACACAAGCT+AGG | 0.555584 | 3.3:+57549747 | None:intergenic |
| GGTGGATCTTAAAAGGAGCC+AGG | 0.555856 | 3.3:-57549441 | MS.gene55664:CDS |
| TCATAGACTTAGCTAGCTGA+GGG | 0.559467 | 3.3:+57546853 | None:intergenic |
| GATGGGATGCACAATACAAA+GGG | 0.566038 | 3.3:-57551188 | MS.gene55664:CDS |
| TTCAAGTTCTCGACATGTAA+GGG | 0.567486 | 3.3:-57551542 | MS.gene55664:CDS |
| TATCTCCCTAGCTTGTGTGA+TGG | 0.569554 | 3.3:-57549753 | MS.gene55664:CDS |
| AGGGTTTCATCCTCTCTCTG+TGG | 0.571271 | 3.3:+57546903 | None:intergenic |
| ACATAAGCTACCTAACATGA+AGG | 0.574557 | 3.3:-57547117 | MS.gene55664:CDS |
| GAATGGTACCGCTGATGGTA+AGG | 0.575256 | 3.3:-57551506 | MS.gene55664:CDS |
| GGATGGGATGCACAATACAA+AGG | 0.581338 | 3.3:-57551189 | MS.gene55664:CDS |
| ATGTAAGGGCACAACATCAT+GGG | 0.583859 | 3.3:-57551528 | MS.gene55664:CDS |
| ATCTGAACTGAAGAAACTTG+AGG | 0.585293 | 3.3:+57551585 | None:intergenic |
| CAGATTCTTCCTCATCCACA+AGG | 0.598144 | 3.3:-57551567 | MS.gene55664:CDS |
| AGCTGCTAATTCATCCTCCA+AGG | 0.599034 | 3.3:-57551146 | MS.gene55664:CDS |
| GATCTTAAAAGGAGCCAGGA+GGG | 0.605501 | 3.3:-57549437 | MS.gene55664:CDS |
| ACTATGGACCCCACAGAGAG+AGG | 0.608037 | 3.3:-57546913 | MS.gene55664:CDS |
| CTAAGGTTGGAATCTTGGAT+GGG | 0.608059 | 3.3:-57551210 | MS.gene55664:intron |
| GTTTAGCAATGAATATTCCA+CGG | 0.610272 | 3.3:-57549297 | MS.gene55664:intron |
| GCTAATTCATCCTCCAAGGA+AGG | 0.613204 | 3.3:-57551142 | MS.gene55664:CDS |
| TTGACCCATCACACAAGCTA+GGG | 0.613413 | 3.3:+57549748 | None:intergenic |
| AGGGCACAACATCATGGGAA+TGG | 0.618730 | 3.3:-57551523 | MS.gene55664:CDS |
| CTTAAAAGGAGCCAGGAGGG+TGG | 0.619800 | 3.3:-57549434 | MS.gene55664:CDS |
| TAAGAAGCCAGAGTTATGAT+CGG | 0.619942 | 3.3:-57549319 | MS.gene55664:CDS |
| GGTGTGAGCTGTTTATTGAA+AGG | 0.648813 | 3.3:-57551121 | MS.gene55664:intron |
| TCTTCAGGAGGTGTCATGGG+AGG | 0.650318 | 3.3:-57551646 | None:intergenic |
| GGTTTCATCCTCTCTCTGTG+GGG | 0.650477 | 3.3:+57546905 | None:intergenic |
| CAAGTGATGAAACTGAAACA+TGG | 0.656775 | 3.3:-57551480 | MS.gene55664:CDS |
| CATAAGCTACCTAACATGAA+GGG | 0.659099 | 3.3:-57547116 | MS.gene55664:CDS |
| TCGAGAACTTGAATACCTTG+TGG | 0.680648 | 3.3:+57551552 | None:intergenic |
| ACTTGCAACCTTACCATCAG+CGG | 0.690100 | 3.3:+57551498 | None:intergenic |
| GGATCTTAAAAGGAGCCAGG+AGG | 0.690908 | 3.3:-57549438 | MS.gene55664:CDS |
| GTTCGACAACAAGTACATAG+TGG | 0.695714 | 3.3:-57548680 | MS.gene55664:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TCTACTAAAAAAATTAAAAA+TGG | + | chr3.3:57550172-57550191 | None:intergenic | 10.0% |
| !!! | CTTATATTTTAACATATTTT+TGG | - | chr3.3:57551151-57551170 | MS.gene55664:CDS | 10.0% |
| !! | GTATTAAATTTACTTACAAT+CGG | + | chr3.3:57548807-57548826 | None:intergenic | 15.0% |
| !!! | AATTTTAAGTTTTCAACTAT+TGG | - | chr3.3:57549632-57549651 | MS.gene55664:intron | 15.0% |
| !!! | AGATTTACTTTTTTTTGAAT+CGG | - | chr3.3:57550316-57550335 | MS.gene55664:intron | 15.0% |
| !!! | ATTTTGTAAAAGCAATTAAA+GGG | - | chr3.3:57549222-57549241 | MS.gene55664:intron | 15.0% |
| !!! | GATATAATTTACTTTTCTTT+GGG | - | chr3.3:57549819-57549838 | MS.gene55664:intron | 15.0% |
| !!! | TATTTTGTAAAAGCAATTAA+AGG | - | chr3.3:57549221-57549240 | MS.gene55664:intron | 15.0% |
| !!! | TGATATAATTTACTTTTCTT+TGG | - | chr3.3:57549818-57549837 | MS.gene55664:intron | 15.0% |
| !!! | TTTCTTTTTTTCAAATTTCT+CGG | + | chr3.3:57549762-57549781 | None:intergenic | 15.0% |
| !!! | TTTTAACTCATTAAATAATG+TGG | - | chr3.3:57547493-57547512 | MS.gene55664:intron | 15.0% |
| !! | AAAAATTAAATCATATACCG+TGG | + | chr3.3:57549196-57549215 | None:intergenic | 20.0% |
| !!! | AATCTTTGTTTAACTTGATT+TGG | + | chr3.3:57550810-57550829 | None:intergenic | 20.0% |
| !!! | TTACAATGCTTGTTTTTTTT+TGG | + | chr3.3:57550489-57550508 | None:intergenic | 20.0% |
| !!! | TTCATTTTACACCATAAAAA+AGG | + | chr3.3:57548531-57548550 | None:intergenic | 20.0% |
| !!! | TTGTTATTGATTACATAAAG+AGG | + | chr3.3:57547856-57547875 | None:intergenic | 20.0% |
| !!! | TTTGATTTGTTTTTTTGAGT+TGG | - | chr3.3:57549851-57549870 | MS.gene55664:intron | 20.0% |
| ! | AAACAGTATAGAAACTCAAA+CGG | + | chr3.3:57548314-57548333 | None:intergenic | 25.0% |
| ! | AGTAATGTATCCAAATTTAC+AGG | + | chr3.3:57551276-57551295 | None:intergenic | 25.0% |
| ! | ATTCTATATTTGGTATCAGA+GGG | - | chr3.3:57549892-57549911 | MS.gene55664:intron | 25.0% |
| ! | CAAACAAGGATAAAATACTA+TGG | + | chr3.3:57550069-57550088 | None:intergenic | 25.0% |
| ! | CTTATGTTAGGTAACAATAT+TGG | - | chr3.3:57551317-57551336 | MS.gene55664:intron | 25.0% |
| ! | GAATATAGTCAAAGTAGTAA+AGG | + | chr3.3:57550201-57550220 | None:intergenic | 25.0% |
| ! | GATTAATTACTTGACTAACA+TGG | - | chr3.3:57547814-57547833 | MS.gene55664:intron | 25.0% |
| ! | GTACTATACTTTAGATGATT+TGG | - | chr3.3:57547950-57547969 | MS.gene55664:intron | 25.0% |
| ! | TATAACCTTGAAATTCTTTC+AGG | - | chr3.3:57551527-57551546 | MS.gene55664:CDS | 25.0% |
| ! | TCTGATACCAAATATAGAAT+CGG | + | chr3.3:57549892-57549911 | None:intergenic | 25.0% |
| ! | TGATATAGTCATGAAAACAA+TGG | + | chr3.3:57550015-57550034 | None:intergenic | 25.0% |
| ! | TGGTGTAAAATGAAAGATTT+AGG | - | chr3.3:57548537-57548556 | MS.gene55664:intron | 25.0% |
| ! | TGTTAGTCAAGTAATTTGAA+TGG | + | chr3.3:57547651-57547670 | None:intergenic | 25.0% |
| ! | TTGATATCTTCCTGTAAATT+TGG | - | chr3.3:57551263-57551282 | MS.gene55664:intron | 25.0% |
| !! | AAAAACAAGCATTGTAAACA+CGG | - | chr3.3:57550492-57550511 | MS.gene55664:intron | 25.0% |
| !! | ACTATTCATGCAATATTTTC+TGG | - | chr3.3:57550949-57550968 | MS.gene55664:intron | 25.0% |
| !! | AGTATATTCATTTTCTGCTA+AGG | + | chr3.3:57550857-57550876 | None:intergenic | 25.0% |
| !! | ATATTGCCTCATATTTTGTT+TGG | - | chr3.3:57551109-57551128 | MS.gene55664:intron | 25.0% |
| !! | ATGAGATTAAACTTTTGTCA+TGG | - | chr3.3:57548031-57548050 | MS.gene55664:intron | 25.0% |
| !! | ATTGATATACTTCTTGTTGT+TGG | - | chr3.3:57548844-57548863 | MS.gene55664:intron | 25.0% |
| !! | GCATGTTTTATAGAGTTTAA+TGG | + | chr3.3:57549410-57549429 | None:intergenic | 25.0% |
| !! | GCTTACTAATAAATTTTTGC+TGG | + | chr3.3:57551430-57551449 | None:intergenic | 25.0% |
| !! | GTATATTCATTTTCTGCTAA+GGG | + | chr3.3:57550856-57550875 | None:intergenic | 25.0% |
| !! | GTCATTGTAAAACAGTTTTA+CGG | + | chr3.3:57549378-57549397 | None:intergenic | 25.0% |
| !! | TAATTGGTAGTATTTATCCA+AGG | + | chr3.3:57551072-57551091 | None:intergenic | 25.0% |
| !! | TTCTGGTTAATGTTGTATAT+GGG | + | chr3.3:57550892-57550911 | None:intergenic | 25.0% |
| !!! | ACAATTGTTGTTAGATTTTC+TGG | + | chr3.3:57550909-57550928 | None:intergenic | 25.0% |
| !!! | ATGTTTTTTTAGAAGAGAGT+TGG | + | chr3.3:57550294-57550313 | None:intergenic | 25.0% |
| !!! | CTTCAATTTCTAGTAATATG+CGG | - | chr3.3:57549429-57549448 | MS.gene55664:CDS | 25.0% |
| !!! | GAGTTTCTATACTGTTTTTT+CGG | - | chr3.3:57548317-57548336 | MS.gene55664:intron | 25.0% |
| !!! | GTTTTGACAAAGTTATATGT+CGG | - | chr3.3:57547715-57547734 | MS.gene55664:intron | 25.0% |
| !!! | TAGTTTTTGGAAAATCATGT+TGG | - | chr3.3:57549947-57549966 | MS.gene55664:intron | 25.0% |
| !!! | TGTTTTTTTAGAAGAGAGTT+GGG | + | chr3.3:57550293-57550312 | None:intergenic | 25.0% |
| !!! | TTCAATTTCTAGTAATATGC+GGG | - | chr3.3:57549430-57549449 | MS.gene55664:CDS | 25.0% |
| !!! | TTTCTGGTTAATGTTGTATA+TGG | + | chr3.3:57550893-57550912 | None:intergenic | 25.0% |
| !!! | TTTGACTTAAGTTGGTTTTT+GGG | + | chr3.3:57550690-57550709 | None:intergenic | 25.0% |
| !!! | TTTTTGAGATGTCTTATGTT+AGG | - | chr3.3:57551305-57551324 | MS.gene55664:intron | 25.0% |
| !!! | TTTTTTTTGGAGTCTGTTTT+AGG | + | chr3.3:57550476-57550495 | None:intergenic | 25.0% |
| AAAAAAAGAAACTTCGCAGT+GGG | - | chr3.3:57549771-57549790 | MS.gene55664:intron | 30.0% | |
| AACATCGCATTGTTAAAACA+TGG | + | chr3.3:57550108-57550127 | None:intergenic | 30.0% | |
| ACCAACTATCAATTGAAGAA+AGG | - | chr3.3:57549076-57549095 | MS.gene55664:intron | 30.0% | |
| ACTATAGTACCAAATTAGCA+GGG | - | chr3.3:57550753-57550772 | MS.gene55664:intron | 30.0% | |
| AGCCATTAAAAGAGAATTGA+AGG | + | chr3.3:57549501-57549520 | None:intergenic | 30.0% | |
| AGGATAAAATACTATGGTGT+TGG | + | chr3.3:57550063-57550082 | None:intergenic | 30.0% | |
| CCAACTATCAATTGAAGAAA+GGG | - | chr3.3:57549077-57549096 | MS.gene55664:intron | 30.0% | |
| CTATAACTCAAATTGCACTT+TGG | + | chr3.3:57548966-57548985 | None:intergenic | 30.0% | |
| GAAGAAAGGGAAAAATTTGA+TGG | - | chr3.3:57549090-57549109 | MS.gene55664:intron | 30.0% | |
| GATTCTATATTTGGTATCAG+AGG | - | chr3.3:57549891-57549910 | MS.gene55664:intron | 30.0% | |
| GCCATTAAAAGAGAATTGAA+GGG | + | chr3.3:57549500-57549519 | None:intergenic | 30.0% | |
| GGATAAAATACTATGGTGTT+GGG | + | chr3.3:57550062-57550081 | None:intergenic | 30.0% | |
| GTTTAGCAATGAATATTCCA+CGG | - | chr3.3:57549176-57549195 | MS.gene55664:intron | 30.0% | |
| TATGGTGTATTGTCTATATG+CGG | + | chr3.3:57550406-57550425 | None:intergenic | 30.0% | |
| TCATACCTCATTAACTGATT+TGG | + | chr3.3:57547461-57547480 | None:intergenic | 30.0% | |
| TCCAAATGAAGGAAAAATAC+CGG | - | chr3.3:57547996-57548015 | MS.gene55664:intron | 30.0% | |
| TCCATAAGTATATGTCTGTT+GGG | - | chr3.3:57547600-57547619 | MS.gene55664:intron | 30.0% | |
| TGGACAAAACAAGATACAAA+TGG | - | chr3.3:57550378-57550397 | MS.gene55664:intron | 30.0% | |
| TGTTTCCAAATCAGTTAATG+AGG | - | chr3.3:57547453-57547472 | MS.gene55664:intron | 30.0% | |
| TTCAAAATAACCATCCAGAA+GGG | + | chr3.3:57549319-57549338 | None:intergenic | 30.0% | |
| TTTCAAAATAACCATCCAGA+AGG | + | chr3.3:57549320-57549339 | None:intergenic | 30.0% | |
| ! | AAAAGCTACACTGTAGTTTT+TGG | - | chr3.3:57549934-57549953 | MS.gene55664:intron | 30.0% |
| ! | AAAGATTTAGGATTCTGATG+TGG | - | chr3.3:57548549-57548568 | MS.gene55664:intron | 30.0% |
| ! | AAGTAGTTTTCCATCTGAAA+GGG | + | chr3.3:57551592-57551611 | None:intergenic | 30.0% |
| ! | ACAATATTGGTAGCTACTAA+AGG | - | chr3.3:57551330-57551349 | MS.gene55664:intron | 30.0% |
| ! | ACCCTTCAATTCTCTTTTAA+TGG | - | chr3.3:57549496-57549515 | MS.gene55664:intron | 30.0% |
| ! | ATAAATTTTTGCTGGAGAGA+AGG | + | chr3.3:57551422-57551441 | None:intergenic | 30.0% |
| ! | ATGATTTGGAAGACAAGAAA+TGG | - | chr3.3:57547964-57547983 | MS.gene55664:intron | 30.0% |
| ! | TAAACTTTTGTCATGGAGAT+GGG | - | chr3.3:57548038-57548057 | MS.gene55664:intron | 30.0% |
| ! | TAAATTTTTGCTGGAGAGAA+GGG | + | chr3.3:57551421-57551440 | None:intergenic | 30.0% |
| ! | TAAGTAGTTTTCCATCTGAA+AGG | + | chr3.3:57551593-57551612 | None:intergenic | 30.0% |
| ! | TGATTTGGAAGACAAGAAAT+GGG | - | chr3.3:57547965-57547984 | MS.gene55664:intron | 30.0% |
| ! | TGGAATTTTCTATGCATGTT+TGG | + | chr3.3:57549995-57550014 | None:intergenic | 30.0% |
| ! | TTAAACTTTTGTCATGGAGA+TGG | - | chr3.3:57548037-57548056 | MS.gene55664:intron | 30.0% |
| !! | CCTCATATTTTGTTTGGATT+GGG | - | chr3.3:57551115-57551134 | MS.gene55664:intron | 30.0% |
| !! | TTCACTACCGATTCTATATT+TGG | - | chr3.3:57549882-57549901 | MS.gene55664:intron | 30.0% |
| !!! | AGCTAGTTTGTTTAGTGTTT+TGG | - | chr3.3:57548680-57548699 | MS.gene55664:intron | 30.0% |
| !!! | ATGGTTCTTGTTTTTCTTCT+TGG | - | chr3.3:57547012-57547031 | MS.gene55664:intron | 30.0% |
| !!! | CTTTGACTTAAGTTGGTTTT+TGG | + | chr3.3:57550691-57550710 | None:intergenic | 30.0% |
| !!! | GATGGTTATTTTGAAACTCA+TGG | - | chr3.3:57549324-57549343 | MS.gene55664:CDS | 30.0% |
| AACTGAACACAAGACGAATT+CGG | + | chr3.3:57548767-57548786 | None:intergenic | 35.0% | |
| AAGCCTTGGGATATTCATAA+TGG | - | chr3.3:57551186-57551205 | MS.gene55664:CDS | 35.0% | |
| AATTCGTCTTGTGTTCAGTT+TGG | - | chr3.3:57548767-57548786 | MS.gene55664:intron | 35.0% | |
| AATTGCACTTTGGCCTAATT+AGG | + | chr3.3:57548956-57548975 | None:intergenic | 35.0% | |
| AATTTGGTACTATAGTCTGG+TGG | + | chr3.3:57550749-57550768 | None:intergenic | 35.0% | |
| ACATAAGCTACCTAACATGA+AGG | - | chr3.3:57551356-57551375 | MS.gene55664:intron | 35.0% | |
| ACATTTGAAAGCAGTAGTGT+AGG | - | chr3.3:57551044-57551063 | MS.gene55664:intron | 35.0% | |
| AGAATTAAAGGAAGGGGATA+TGG | - | chr3.3:57547917-57547936 | MS.gene55664:intron | 35.0% | |
| AGCGTATGGTTCATTGTTAA+GGG | - | chr3.3:57551000-57551019 | MS.gene55664:intron | 35.0% | |
| AGGGGTAAGAATTAAAGGAA+GGG | - | chr3.3:57547910-57547929 | MS.gene55664:intron | 35.0% | |
| AGTTCTACACATGCATCAAA+TGG | + | chr3.3:57547526-57547545 | None:intergenic | 35.0% | |
| ATCCTATTAACTGTTTGGAC+AGG | - | chr3.3:57548111-57548130 | MS.gene55664:intron | 35.0% | |
| ATCTCATTCACTACTTCTTC+CGG | + | chr3.3:57548018-57548037 | None:intergenic | 35.0% | |
| ATCTGAACTGAAGAAACTTG+AGG | + | chr3.3:57546891-57546910 | None:intergenic | 35.0% | |
| ATTAACTGTTTGGACAGGTA+AGG | - | chr3.3:57548116-57548135 | MS.gene55664:intron | 35.0% | |
| ATTTGGTACTATAGTCTGGT+GGG | + | chr3.3:57550748-57550767 | None:intergenic | 35.0% | |
| CAAGTGATGAAACTGAAACA+TGG | - | chr3.3:57546993-57547012 | MS.gene55664:intron | 35.0% | |
| CAATACAAAGGGATCTAACT+AGG | - | chr3.3:57547296-57547315 | MS.gene55664:intron | 35.0% | |
| CACTTTGATATAGATTGTCG+AGG | - | chr3.3:57547877-57547896 | MS.gene55664:intron | 35.0% | |
| CATAAGCTACCTAACATGAA+GGG | - | chr3.3:57551357-57551376 | MS.gene55664:intron | 35.0% | |
| CCCAATCCAAACAAAATATG+AGG | + | chr3.3:57551118-57551137 | None:intergenic | 35.0% | |
| CTACCAATTAGAGAACCATA+TGG | - | chr3.3:57551082-57551101 | MS.gene55664:intron | 35.0% | |
| GAAAAAAAGAAACTTCGCAG+TGG | - | chr3.3:57549770-57549789 | MS.gene55664:intron | 35.0% | |
| GAACCATATGGTTCTCTAAT+TGG | + | chr3.3:57551088-57551107 | None:intergenic | 35.0% | |
| GAAGGGAGCTGAATATTTAA+AGG | - | chr3.3:57551374-57551393 | MS.gene55664:intron | 35.0% | |
| GACTATAGTACCAAATTAGC+AGG | - | chr3.3:57550752-57550771 | MS.gene55664:intron | 35.0% | |
| GATCTCGAATCAAAAGTGAT+CGG | - | chr3.3:57550722-57550741 | MS.gene55664:intron | 35.0% | |
| GCTAATTTGGTACTATAGTC+TGG | + | chr3.3:57550752-57550771 | None:intergenic | 35.0% | |
| GGAAGATATCAAAATGCAAC+AGG | + | chr3.3:57551255-57551274 | None:intergenic | 35.0% | |
| GGGATTGTATTTCCAAATGA+AGG | - | chr3.3:57547985-57548004 | MS.gene55664:intron | 35.0% | |
| GGTCTCATGATACTTAAGAA+GGG | - | chr3.3:57550254-57550273 | MS.gene55664:intron | 35.0% | |
| GTCCATAAGTATATGTCTGT+TGG | - | chr3.3:57547599-57547618 | MS.gene55664:intron | 35.0% | |
| GTTCATTCCTTCTCCTAATT+AGG | - | chr3.3:57548940-57548959 | MS.gene55664:intron | 35.0% | |
| TAAAAGAGAATTGAAGGGTG+AGG | + | chr3.3:57549495-57549514 | None:intergenic | 35.0% | |
| TAACCCCTTTAACACCTATA+GGG | + | chr3.3:57548990-57549009 | None:intergenic | 35.0% | |
| TAAGAAGCCAGAGTTATGAT+CGG | - | chr3.3:57549154-57549173 | MS.gene55664:intron | 35.0% | |
| TACCTGTCCAAACAGTTAAT+AGG | + | chr3.3:57548116-57548135 | None:intergenic | 35.0% | |
| TAGCCATTATGAATATCCCA+AGG | + | chr3.3:57551192-57551211 | None:intergenic | 35.0% | |
| TAGCGTATGGTTCATTGTTA+AGG | - | chr3.3:57550999-57551018 | MS.gene55664:intron | 35.0% | |
| TAGGGGTAAGAATTAAAGGA+AGG | - | chr3.3:57547909-57547928 | MS.gene55664:intron | 35.0% | |
| TCAAAATAACCATCCAGAAG+GGG | + | chr3.3:57549318-57549337 | None:intergenic | 35.0% | |
| TCAATTAAGAGAGATTGCAG+TGG | + | chr3.3:57548829-57548848 | None:intergenic | 35.0% | |
| TCCCAACAGACATATACTTA+TGG | + | chr3.3:57547604-57547623 | None:intergenic | 35.0% | |
| TGACTAACATACAACAACCA+AGG | - | chr3.3:57547662-57547681 | MS.gene55664:intron | 35.0% | |
| TGAGGCAATATTGAACCATA+TGG | + | chr3.3:57551100-57551119 | None:intergenic | 35.0% | |
| TGGTCTCATGATACTTAAGA+AGG | - | chr3.3:57550253-57550272 | MS.gene55664:intron | 35.0% | |
| TGGTTATGTGGTAGTATCTT+CGG | - | chr3.3:57548475-57548494 | MS.gene55664:intron | 35.0% | |
| TGTAAAAGCAATTAAAGGGC+AGG | - | chr3.3:57549226-57549245 | MS.gene55664:intron | 35.0% | |
| TGTATTGTCTCTGTTAAGCA+AGG | + | chr3.3:57548870-57548889 | None:intergenic | 35.0% | |
| TTAAGTATCATGAGACCACT+TGG | + | chr3.3:57550251-57550270 | None:intergenic | 35.0% | |
| TTGATATAGATTGTCGAGGT+GGG | - | chr3.3:57547881-57547900 | MS.gene55664:intron | 35.0% | |
| TTTGATATAGATTGTCGAGG+TGG | - | chr3.3:57547880-57547899 | MS.gene55664:intron | 35.0% | |
| ! | AAGTTATATGTCGGTTGTTG+AGG | - | chr3.3:57547724-57547743 | MS.gene55664:intron | 35.0% |
| ! | ATTCAAGTTCTCGACATGTA+AGG | - | chr3.3:57546930-57546949 | MS.gene55664:intron | 35.0% |
| ! | ATTTGAGTTATAGCCCCTAT+AGG | - | chr3.3:57548973-57548992 | MS.gene55664:intron | 35.0% |
| ! | CCCTTTCTTCAATTGATAGT+TGG | + | chr3.3:57549080-57549099 | None:intergenic | 35.0% |
| ! | CTGCAAAGTTTGTTCATCAA+GGG | + | chr3.3:57549013-57549032 | None:intergenic | 35.0% |
| ! | CTTTGGTGTGTTTATCTTCA+GGG | + | chr3.3:57550443-57550462 | None:intergenic | 35.0% |
| ! | GTCAGTTCTTTGACTTAAGT+TGG | + | chr3.3:57550698-57550717 | None:intergenic | 35.0% |
| ! | TAGTTTGTAGGTGTGCTTTA+TGG | - | chr3.3:57548388-57548407 | MS.gene55664:intron | 35.0% |
| ! | TATCCTTGTTTGCTCAGTAA+TGG | - | chr3.3:57550077-57550096 | MS.gene55664:intron | 35.0% |
| ! | TCCGGTATTTTTCCTTCATT+TGG | + | chr3.3:57548000-57548019 | None:intergenic | 35.0% |
| ! | TGAAGCATTCATATAGCGTA+TGG | - | chr3.3:57550986-57551005 | MS.gene55664:intron | 35.0% |
| ! | TTCAAAATCTGGCTCAGTTT+GGG | + | chr3.3:57550591-57550610 | None:intergenic | 35.0% |
| ! | TTCAAGTTCTCGACATGTAA+GGG | - | chr3.3:57546931-57546950 | MS.gene55664:intron | 35.0% |
| !! | ATCACTTTTGATTCGAGATC+GGG | + | chr3.3:57550722-57550741 | None:intergenic | 35.0% |
| !! | CTGATTTGGAAACACATGAT+TGG | + | chr3.3:57547447-57547466 | None:intergenic | 35.0% |
| !! | GATCACTTTTGATTCGAGAT+CGG | + | chr3.3:57550723-57550742 | None:intergenic | 35.0% |
| !! | GCCTCATATTTTGTTTGGAT+TGG | - | chr3.3:57551114-57551133 | MS.gene55664:intron | 35.0% |
| !! | TTGGTTTTTCTCTAGTGTAC+CGG | + | chr3.3:57550791-57550810 | None:intergenic | 35.0% |
| !! | TTTATCTTCAGGGTGTTTTG+AGG | + | chr3.3:57550433-57550452 | None:intergenic | 35.0% |
| !!! | CAGTTTCAGTTTTGGTTATG+TGG | - | chr3.3:57548463-57548482 | MS.gene55664:intron | 35.0% |
| !!! | CTCTAGTTTTTTAGTGTAGC+AGG | - | chr3.3:57548361-57548380 | MS.gene55664:intron | 35.0% |
| !!! | TATACTGTTTTTTCGGATGC+AGG | - | chr3.3:57548324-57548343 | MS.gene55664:intron | 35.0% |
| !!! | TGTTTGCGTAGTTGTTTTTC+TGG | - | chr3.3:57548220-57548239 | MS.gene55664:intron | 35.0% |
| !!! | TTTTTGGAGTCTGTTTTAGG+TGG | + | chr3.3:57550473-57550492 | None:intergenic | 35.0% |
| AAAACAACTACGCAAACAGC+AGG | + | chr3.3:57548218-57548237 | None:intergenic | 40.0% | |
| AAACAGCCCAAAACAACCTA+GGG | + | chr3.3:57548651-57548670 | None:intergenic | 40.0% | |
| AACCCCTTTAACACCTATAG+GGG | + | chr3.3:57548989-57549008 | None:intergenic | 40.0% | |
| AACTGTCCTGCACTAAAACA+AGG | + | chr3.3:57548448-57548467 | None:intergenic | 40.0% | |
| ACACAAGACGAATTCGGAAT+CGG | + | chr3.3:57548761-57548780 | None:intergenic | 40.0% | |
| ACCAGCCTGAAAGAATTTCA+AGG | + | chr3.3:57551535-57551554 | None:intergenic | 40.0% | |
| ACCTTGAAATTCTTTCAGGC+TGG | - | chr3.3:57551531-57551550 | MS.gene55664:CDS | 40.0% | |
| ACTGAAGAAACTTGAGGATG+AGG | + | chr3.3:57546885-57546904 | None:intergenic | 40.0% | |
| ACTTGAATACCTTGTGGATG+AGG | + | chr3.3:57546918-57546937 | None:intergenic | 40.0% | |
| ACTTTGGCCTAATTAGGAGA+AGG | + | chr3.3:57548950-57548969 | None:intergenic | 40.0% | |
| AGCACTTGAAGCAAAACACA+CGG | + | chr3.3:57548286-57548305 | None:intergenic | 40.0% | |
| ATACTTATGGACAGAAGCAG+AGG | + | chr3.3:57547591-57547610 | None:intergenic | 40.0% | |
| ATAGCCCCTATAGGTGTTAA+AGG | - | chr3.3:57548982-57549001 | MS.gene55664:intron | 40.0% | |
| ATCCGACAGAAACAAATGAG+TGG | - | chr3.3:57549529-57549548 | MS.gene55664:intron | 40.0% | |
| ATCTGCAGAAAGCTAGTAGT+TGG | + | chr3.3:57549713-57549732 | None:intergenic | 40.0% | |
| ATGAGACCACTTGGACAATA+TGG | + | chr3.3:57550242-57550261 | None:intergenic | 40.0% | |
| CAAAATAACCATCCAGAAGG+GGG | + | chr3.3:57549317-57549336 | None:intergenic | 40.0% | |
| CCTTGATGAACAAACTTTGC+AGG | - | chr3.3:57549011-57549030 | MS.gene55664:intron | 40.0% | |
| CTAAGGTTGGAATCTTGGAT+GGG | - | chr3.3:57547263-57547282 | MS.gene55664:intron | 40.0% | |
| CTTTGCAGGTGGATCTTAAA+AGG | - | chr3.3:57549025-57549044 | MS.gene55664:intron | 40.0% | |
| GATCCATTACTGAGCAAACA+AGG | + | chr3.3:57550083-57550102 | None:intergenic | 40.0% | |
| GATGGGATGCACAATACAAA+GGG | - | chr3.3:57547285-57547304 | MS.gene55664:intron | 40.0% | |
| GATGTAGAGTTATGTGCTTC+TGG | - | chr3.3:57548599-57548618 | MS.gene55664:intron | 40.0% | |
| GGAAGGGGATATGGTTAATT+TGG | - | chr3.3:57547926-57547945 | MS.gene55664:intron | 40.0% | |
| GGGGTAAGAATTAAAGGAAG+GGG | - | chr3.3:57547911-57547930 | MS.gene55664:intron | 40.0% | |
| GGTGTAATATGGCAAAGTAG+TGG | + | chr3.3:57549296-57549315 | None:intergenic | 40.0% | |
| GGTGTGAGCTGTTTATTGAA+AGG | - | chr3.3:57547352-57547371 | MS.gene55664:intron | 40.0% | |
| GTAACCCCTTTAACACCTAT+AGG | + | chr3.3:57548991-57549010 | None:intergenic | 40.0% | |
| GTGGGATCCTATTAACTGTT+TGG | - | chr3.3:57548106-57548125 | MS.gene55664:intron | 40.0% | |
| GTTAGGTGCTCTTCAAAATC+TGG | + | chr3.3:57550602-57550621 | None:intergenic | 40.0% | |
| GTTCGACAACAAGTACATAG+TGG | - | chr3.3:57549793-57549812 | MS.gene55664:intron | 40.0% | |
| GTTTGTGTGTCTGTTGTCTA+AGG | - | chr3.3:57547246-57547265 | MS.gene55664:intron | 40.0% | |
| TAAAAAAGGCAGCAGAAGAC+AGG | + | chr3.3:57548517-57548536 | None:intergenic | 40.0% | |
| TAACAATGCGATGTTGCAAG+TGG | - | chr3.3:57550113-57550132 | MS.gene55664:intron | 40.0% | |
| TAGCCCCTATAGGTGTTAAA+GGG | - | chr3.3:57548983-57549002 | MS.gene55664:intron | 40.0% | |
| TATGCATGTTTGGTATCTGC+CGG | + | chr3.3:57549985-57550004 | None:intergenic | 40.0% | |
| TATGTGGTAGTATCTTCGGT+TGG | - | chr3.3:57548479-57548498 | MS.gene55664:intron | 40.0% | |
| TATTCAGCTCCCTTCATGTT+AGG | + | chr3.3:57551369-57551388 | None:intergenic | 40.0% | |
| TCATAGACTTAGCTAGCTGA+GGG | + | chr3.3:57551623-57551642 | None:intergenic | 40.0% | |
| TCGAGAACTTGAATACCTTG+TGG | + | chr3.3:57546924-57546943 | None:intergenic | 40.0% | |
| TGATATAGATTGTCGAGGTG+GGG | - | chr3.3:57547882-57547901 | MS.gene55664:intron | 40.0% | |
| TGATGAACAAACTTTGCAGG+TGG | - | chr3.3:57549014-57549033 | MS.gene55664:intron | 40.0% | |
| TGCTAAACCGATCATAACTC+TGG | + | chr3.3:57549164-57549183 | None:intergenic | 40.0% | |
| TGGGTAGGGGTAAGAATTAA+AGG | - | chr3.3:57547905-57547924 | MS.gene55664:intron | 40.0% | |
| TTACGGTGACATTCAATGAG+AGG | + | chr3.3:57549361-57549380 | None:intergenic | 40.0% | |
| TTCATAGACTTAGCTAGCTG+AGG | + | chr3.3:57551624-57551643 | None:intergenic | 40.0% | |
| TTCTTCTTGGTACTTGCACT+TGG | - | chr3.3:57547025-57547044 | MS.gene55664:intron | 40.0% | |
| ! | ATAGTGTCCCTAGGTTGTTT+TGG | - | chr3.3:57548641-57548660 | MS.gene55664:intron | 40.0% |
| ! | ATGTAAGGGCACAACATCAT+GGG | - | chr3.3:57546945-57546964 | MS.gene55664:intron | 40.0% |
| ! | CCTGCAAAGTTTGTTCATCA+AGG | + | chr3.3:57549014-57549033 | None:intergenic | 40.0% |
| ! | CTTCAAAATCTGGCTCAGTT+TGG | + | chr3.3:57550592-57550611 | None:intergenic | 40.0% |
| ! | GCTTTGGTGTGTTTATCTTC+AGG | + | chr3.3:57550444-57550463 | None:intergenic | 40.0% |
| ! | GTCTGGGAGTTTTACTTTGA+GGG | + | chr3.3:57550560-57550579 | None:intergenic | 40.0% |
| ! | GTTGTCTAAGGTTGGAATCT+TGG | - | chr3.3:57547258-57547277 | MS.gene55664:intron | 40.0% |
| ! | TCTAAGGTTGGAATCTTGGA+TGG | - | chr3.3:57547262-57547281 | MS.gene55664:intron | 40.0% |
| ! | TGGTTTTTCTCTAGTGTACC+GGG | + | chr3.3:57550790-57550809 | None:intergenic | 40.0% |
| ! | TTCACCGCAGAAACTTTTCA+CGG | - | chr3.3:57549557-57549576 | MS.gene55664:intron | 40.0% |
| !! | AAAATCATGTTGGCTCACAG+TGG | - | chr3.3:57549957-57549976 | MS.gene55664:intron | 40.0% |
| !! | GTAGCAGGTTGTTAGTTTGT+AGG | - | chr3.3:57548376-57548395 | MS.gene55664:intron | 40.0% |
| !! | TAGTGTCCCTAGGTTGTTTT+GGG | - | chr3.3:57548642-57548661 | MS.gene55664:intron | 40.0% |
| !! | TGCCACTCATTTGTTTCTGT+CGG | + | chr3.3:57549534-57549553 | None:intergenic | 40.0% |
| !! | TTTTAGGTGGTGATGTGCTT+TGG | + | chr3.3:57550460-57550479 | None:intergenic | 40.0% |
| !!! | ACTTGCACTTGGTGTCATTT+TGG | - | chr3.3:57547036-57547055 | MS.gene55664:intron | 40.0% |
| !!! | ACTTTGAGGGTGTCTTTTGT+GGG | + | chr3.3:57550547-57550566 | None:intergenic | 40.0% |
| !!! | CTTGGTGTCATTTTGGCTAT+AGG | - | chr3.3:57547043-57547062 | MS.gene55664:intron | 40.0% |
| !!! | GTCTTCTGCTGCCTTTTTTA+TGG | - | chr3.3:57548517-57548536 | MS.gene55664:intron | 40.0% |
| !!! | TACTTTGAGGGTGTCTTTTG+TGG | + | chr3.3:57550548-57550567 | None:intergenic | 40.0% |
| AAGCAGTAGTGTAGGTTCCT+TGG | - | chr3.3:57551052-57551071 | MS.gene55664:intron | 45.0% | |
| AAGGCTTATCCCACTAAGTG+GGG | - | chr3.3:57547681-57547700 | MS.gene55664:intron | 45.0% | |
| ACACTGCCATATTGTCCAAG+TGG | - | chr3.3:57550233-57550252 | MS.gene55664:intron | 45.0% | |
| ACTTGCAACCTTACCATCAG+CGG | + | chr3.3:57546978-57546997 | None:intergenic | 45.0% | |
| AGCCCCTATAGGTGTTAAAG+GGG | - | chr3.3:57548984-57549003 | MS.gene55664:intron | 45.0% | |
| AGCTGCTAATTCATCCTCCA+AGG | - | chr3.3:57547327-57547346 | MS.gene55664:intron | 45.0% | |
| AGTTACTGTGCTCAAGCTTC+AGG | - | chr3.3:57547093-57547112 | MS.gene55664:CDS | 45.0% | |
| ATATTACACCCCCTTCTGGA+TGG | - | chr3.3:57549306-57549325 | MS.gene55664:CDS | 45.0% | |
| ATCCCAAGGCTTCTTTCACT+TGG | + | chr3.3:57551178-57551197 | None:intergenic | 45.0% | |
| ATGCATGGGAAGGCTAACAT+AGG | - | chr3.3:57547788-57547807 | MS.gene55664:intron | 45.0% | |
| ATTGACCCATCACACAAGCT+AGG | + | chr3.3:57548729-57548748 | None:intergenic | 45.0% | |
| CAAGGCTTATCCCACTAAGT+GGG | - | chr3.3:57547680-57547699 | MS.gene55664:intron | 45.0% | |
| CAGATTCTTCCTCATCCACA+AGG | - | chr3.3:57546906-57546925 | MS.gene55664:CDS | 45.0% | |
| CATCGTCGTTACTGTATAGC+AGG | - | chr3.3:57548903-57548922 | MS.gene55664:intron | 45.0% | |
| GAAACAGCCCAAAACAACCT+AGG | + | chr3.3:57548652-57548671 | None:intergenic | 45.0% | |
| GAAACTTGAGGATGAGGATG+AGG | + | chr3.3:57546879-57546898 | None:intergenic | 45.0% | |
| GAAATTCTTTCAGGCTGGTG+AGG | - | chr3.3:57551536-57551555 | MS.gene55664:CDS | 45.0% | |
| GAGGATGAAACCCTTTCAGA+TGG | - | chr3.3:57551579-57551598 | MS.gene55664:CDS | 45.0% | |
| GATCTTAAAAGGAGCCAGGA+GGG | - | chr3.3:57549036-57549055 | MS.gene55664:intron | 45.0% | |
| GCTAATTCATCCTCCAAGGA+AGG | - | chr3.3:57547331-57547350 | MS.gene55664:intron | 45.0% | |
| GGATGGGATGCACAATACAA+AGG | - | chr3.3:57547284-57547303 | MS.gene55664:intron | 45.0% | |
| GGTGTGCTTTATGGCTGATT+TGG | - | chr3.3:57548397-57548416 | MS.gene55664:intron | 45.0% | |
| GTCCAAGTGAAAGAAGCCTT+GGG | - | chr3.3:57551173-57551192 | MS.gene55664:CDS | 45.0% | |
| GTGATAGCTGCATGATCCTT+CGG | + | chr3.3:57550624-57550643 | None:intergenic | 45.0% | |
| GTTGGAATCTTGGATGGGAT+GGG | - | chr3.3:57547268-57547287 | MS.gene55664:intron | 45.0% | |
| TAAACAGCTCACACCTTCCT+TGG | + | chr3.3:57547347-57547366 | None:intergenic | 45.0% | |
| TCTGCCGTGAAAAGTTTCTG+CGG | + | chr3.3:57549564-57549583 | None:intergenic | 45.0% | |
| TGGTGCATTATAGTGTCCCT+AGG | - | chr3.3:57548632-57548651 | MS.gene55664:intron | 45.0% | |
| TGTTTGGACAGGTAAGGAGT+GGG | - | chr3.3:57548122-57548141 | MS.gene55664:intron | 45.0% | |
| TTGACCCATCACACAAGCTA+GGG | + | chr3.3:57548728-57548747 | None:intergenic | 45.0% | |
| TTTGTGTTGTGCTCTTTCGG+TGG | + | chr3.3:57550666-57550685 | None:intergenic | 45.0% | |
| ! | ACACAACCTCTCCTTTTACC+CGG | - | chr3.3:57547751-57547770 | MS.gene55664:intron | 45.0% |
| ! | AGCTTTGTGTCAGCATCAAC+AGG | + | chr3.3:57548256-57548275 | None:intergenic | 45.0% |
| ! | ATCCAGAAGGGGGTGTAATA+TGG | + | chr3.3:57549307-57549326 | None:intergenic | 45.0% |
| ! | ATCTCCCTAGCTTGTGTGAT+GGG | - | chr3.3:57548721-57548740 | MS.gene55664:CDS | 45.0% |
| ! | ATCTCTGGCGAGGTTTTTAC+TGG | - | chr3.3:57549461-57549480 | MS.gene55664:intron | 45.0% |
| ! | ATGGAGATGGGTTTGAGTAG+AGG | - | chr3.3:57548050-57548069 | MS.gene55664:intron | 45.0% |
| ! | CATGTAAGGGCACAACATCA+TGG | - | chr3.3:57546944-57546963 | MS.gene55664:intron | 45.0% |
| ! | GGCTTTGTGTTGTGCTCTTT+CGG | + | chr3.3:57550669-57550688 | None:intergenic | 45.0% |
| ! | GGTCTGGGAGTTTTACTTTG+AGG | + | chr3.3:57550561-57550580 | None:intergenic | 45.0% |
| ! | GGTTTTTCTCTAGTGTACCG+GGG | + | chr3.3:57550789-57550808 | None:intergenic | 45.0% |
| ! | GTGCAGGACAGTTTCAGTTT+TGG | - | chr3.3:57548455-57548474 | MS.gene55664:intron | 45.0% |
| ! | GTGTGTCTGTTGTCTAAGGT+TGG | - | chr3.3:57547250-57547269 | MS.gene55664:intron | 45.0% |
| ! | GTGTGTTTTGCTTCAAGTGC+TGG | - | chr3.3:57548285-57548304 | MS.gene55664:intron | 45.0% |
| ! | GTTTTTCTCTAGTGTACCGG+GGG | + | chr3.3:57550788-57550807 | None:intergenic | 45.0% |
| ! | TATCTCCCTAGCTTGTGTGA+TGG | - | chr3.3:57548720-57548739 | MS.gene55664:CDS | 45.0% |
| ! | TCTCTGGCGAGGTTTTTACT+GGG | - | chr3.3:57549462-57549481 | MS.gene55664:intron | 45.0% |
| ! | TGGAGATGGGTTTGAGTAGA+GGG | - | chr3.3:57548051-57548070 | MS.gene55664:intron | 45.0% |
| !! | TTGGCGAAGAGTTTTCTGGT+CGG | - | chr3.3:57548172-57548191 | MS.gene55664:intron | 45.0% |
| !! | TTTGAAGAGCACCTAACCGA+AGG | - | chr3.3:57550605-57550624 | MS.gene55664:intron | 45.0% |
| !!! | AGGGTGTTTTGAGGTGGTTA+TGG | + | chr3.3:57550424-57550443 | None:intergenic | 45.0% |
| !!! | ATCTTCAGGGTGTTTTGAGG+TGG | + | chr3.3:57550430-57550449 | None:intergenic | 45.0% |
| !!! | TGTGTTTTGGTTGGAGTCCT+TGG | - | chr3.3:57548153-57548172 | MS.gene55664:intron | 45.0% |
| ACTGCCTTCTCTATGAGTGG+AGG | - | chr3.3:57548084-57548103 | MS.gene55664:intron | 50.0% | |
| AGCTGCATGATCCTTCGGTT+AGG | + | chr3.3:57550619-57550638 | None:intergenic | 50.0% | |
| AGGGCACAACATCATGGGAA+TGG | - | chr3.3:57546950-57546969 | MS.gene55664:intron | 50.0% | |
| AGGGTTTCATCCTCTCTCTG+TGG | + | chr3.3:57551573-57551592 | None:intergenic | 50.0% | |
| ATAGATTGTCGAGGTGGGGT+GGG | - | chr3.3:57547886-57547905 | MS.gene55664:intron | 50.0% | |
| ATGCGGGAACAGATCATCTC+TGG | - | chr3.3:57549446-57549465 | MS.gene55664:intron | 50.0% | |
| ATGGGAAGGCTAACATAGGC+AGG | - | chr3.3:57547792-57547811 | MS.gene55664:intron | 50.0% | |
| CCAAGGCTTATCCCACTAAG+TGG | - | chr3.3:57547679-57547698 | MS.gene55664:intron | 50.0% | |
| CCACTTAGTGGGATAAGCCT+TGG | + | chr3.3:57547682-57547701 | None:intergenic | 50.0% | |
| CCTTCTCTATGAGTGGAGGT+GGG | - | chr3.3:57548088-57548107 | MS.gene55664:intron | 50.0% | |
| CTCACTGCCTTCTCTATGAG+TGG | - | chr3.3:57548081-57548100 | MS.gene55664:intron | 50.0% | |
| CTGTTTGGACAGGTAAGGAG+TGG | - | chr3.3:57548121-57548140 | MS.gene55664:intron | 50.0% | |
| CTTATCCCACTAAGTGGGGT+CGG | - | chr3.3:57547685-57547704 | MS.gene55664:intron | 50.0% | |
| GAATGGTACCGCTGATGGTA+AGG | - | chr3.3:57546967-57546986 | MS.gene55664:intron | 50.0% | |
| GACCAGAAAACTCTTCGCCA+AGG | + | chr3.3:57548173-57548192 | None:intergenic | 50.0% | |
| GGATCTTAAAAGGAGCCAGG+AGG | - | chr3.3:57549035-57549054 | MS.gene55664:intron | 50.0% | |
| GGGTTTCATCCTCTCTCTGT+GGG | + | chr3.3:57551572-57551591 | None:intergenic | 50.0% | |
| GGTCCAAGTGAAAGAAGCCT+TGG | - | chr3.3:57551172-57551191 | MS.gene55664:CDS | 50.0% | |
| GGTGGATCTTAAAAGGAGCC+AGG | - | chr3.3:57549032-57549051 | MS.gene55664:intron | 50.0% | |
| GGTTGGAATCTTGGATGGGA+TGG | - | chr3.3:57547267-57547286 | MS.gene55664:intron | 50.0% | |
| GGTTTCATCCTCTCTCTGTG+GGG | + | chr3.3:57551571-57551590 | None:intergenic | 50.0% | |
| GTTCACACTGCAGTGTGGTT+GGG | - | chr3.3:57548421-57548440 | MS.gene55664:intron | 50.0% | |
| GTTGTGCTCTTTCGGTGGAT+CGG | + | chr3.3:57550661-57550680 | None:intergenic | 50.0% | |
| TATAGATTGTCGAGGTGGGG+TGG | - | chr3.3:57547885-57547904 | MS.gene55664:intron | 50.0% | |
| TATAGCCGACCCCACTTAGT+GGG | + | chr3.3:57547693-57547712 | None:intergenic | 50.0% | |
| TGCCATATTACACCCCCTTC+TGG | - | chr3.3:57549302-57549321 | MS.gene55664:CDS | 50.0% | |
| TGTCCATACCTTGCGTCTTG+CGG | + | chr3.3:57550364-57550383 | None:intergenic | 50.0% | |
| TGTGGGTGAGTAGTGACGAT+GGG | + | chr3.3:57550530-57550549 | None:intergenic | 50.0% | |
| TGTTCACACTGCAGTGTGGT+TGG | - | chr3.3:57548420-57548439 | MS.gene55664:intron | 50.0% | |
| TTCACACTGCAGTGTGGTTG+GGG | - | chr3.3:57548422-57548441 | MS.gene55664:intron | 50.0% | |
| TTGTGGGTGAGTAGTGACGA+TGG | + | chr3.3:57550531-57550550 | None:intergenic | 50.0% | |
| ! | ATCTGGCTCAGTTTGGGTGT+TGG | + | chr3.3:57550585-57550604 | None:intergenic | 50.0% |
| ! | CACAACCTCTCCTTTTACCC+GGG | - | chr3.3:57547752-57547771 | MS.gene55664:intron | 50.0% |
| ! | GACCAGAAGCACATAGCAGT+AGG | + | chr3.3:57548575-57548594 | None:intergenic | 50.0% |
| ! | GTCCTTGGCGAAGAGTTTTC+TGG | - | chr3.3:57548168-57548187 | MS.gene55664:intron | 50.0% |
| ! | GTGCTTCTGGTCTGCAGTTT+TGG | - | chr3.3:57548612-57548631 | MS.gene55664:intron | 50.0% |
| ! | TCTGGCTCAGTTTGGGTGTT+GGG | + | chr3.3:57550584-57550603 | None:intergenic | 50.0% |
| ! | TTAGCCTTCCCATGCATAGC+CGG | + | chr3.3:57547785-57547804 | None:intergenic | 50.0% |
| ! | TTCAGGCTGGTGAGGTACTA+TGG | - | chr3.3:57551544-57551563 | MS.gene55664:CDS | 50.0% |
| ! | TTGGTGTTCACACTGCAGTG+TGG | - | chr3.3:57548416-57548435 | MS.gene55664:intron | 50.0% |
| !! | AAGAGTTTTCTGGTCGGTGC+TGG | - | chr3.3:57548178-57548197 | MS.gene55664:intron | 50.0% |
| !! | ATGTTGGCTCACAGTGGTTC+CGG | - | chr3.3:57549963-57549982 | MS.gene55664:intron | 50.0% |
| !!! | GTGAGGAGGTGTGTTTTGGT+TGG | - | chr3.3:57548144-57548163 | MS.gene55664:intron | 50.0% |
| !!! | TTGGGGCCTTGTTTTAGTGC+AGG | - | chr3.3:57548439-57548458 | MS.gene55664:intron | 50.0% |
| ACAAGCCCGGGTAAAAGGAG+AGG | + | chr3.3:57547760-57547779 | None:intergenic | 55.0% | |
| ACAGCTCACACCTTCCTTGG+AGG | + | chr3.3:57547344-57547363 | None:intergenic | 55.0% | |
| ACTATGGACCCCACAGAGAG+AGG | - | chr3.3:57551560-57551579 | MS.gene55664:CDS | 55.0% | |
| AGCATGTTTCTCCACCCTCC+TGG | + | chr3.3:57549053-57549072 | None:intergenic | 55.0% | |
| CATGGGAATGGTACCGCTGA+TGG | - | chr3.3:57546962-57546981 | MS.gene55664:intron | 55.0% | |
| CCCACCTCCACTCATAGAGA+AGG | + | chr3.3:57548091-57548110 | None:intergenic | 55.0% | |
| CTATAGCCGACCCCACTTAG+TGG | + | chr3.3:57547694-57547713 | None:intergenic | 55.0% | |
| CTTAAAAGGAGCCAGGAGGG+TGG | - | chr3.3:57549039-57549058 | MS.gene55664:intron | 55.0% | |
| GCCTTCTCTATGAGTGGAGG+TGG | - | chr3.3:57548087-57548106 | MS.gene55664:intron | 55.0% | |
| GCTTGTGACCGGCTATGCAT+GGG | - | chr3.3:57547774-57547793 | MS.gene55664:intron | 55.0% | |
| GGAACAGATCATCTCTGGCG+AGG | - | chr3.3:57549451-57549470 | MS.gene55664:intron | 55.0% | |
| GGCCTACTGCTATGTGCTTC+TGG | - | chr3.3:57548570-57548589 | MS.gene55664:intron | 55.0% | |
| GTCCATACCTTGCGTCTTGC+GGG | + | chr3.3:57550363-57550382 | None:intergenic | 55.0% | |
| TCCATACCTTGCGTCTTGCG+GGG | + | chr3.3:57550362-57550381 | None:intergenic | 55.0% | |
| TGAGTAGTGACGATGGGTGG+TGG | + | chr3.3:57550524-57550543 | None:intergenic | 55.0% | |
| ! | CTGGCGAGGTTTTTACTGGG+TGG | - | chr3.3:57549465-57549484 | MS.gene55664:intron | 55.0% |
| ! | CTGGCTCAGTTTGGGTGTTG+GGG | + | chr3.3:57550583-57550602 | None:intergenic | 55.0% |
| ! | CTTTTACCCGGGCTTGTGAC+CGG | - | chr3.3:57547763-57547782 | MS.gene55664:intron | 55.0% |
| !! | AGTTTGGGTGTTGGGGGTCT+GGG | + | chr3.3:57550576-57550595 | None:intergenic | 55.0% |
| !! | GTGGGTGAGGAGGTGTGTTT+TGG | - | chr3.3:57548140-57548159 | MS.gene55664:intron | 55.0% |
| !! | TGGCTCAGTTTGGGTGTTGG+GGG | + | chr3.3:57550582-57550601 | None:intergenic | 55.0% |
| ATTGTCGAGGTGGGGTGGGT+AGG | - | chr3.3:57547890-57547909 | MS.gene55664:intron | 60.0% | |
| CAGGTAAGGAGTGGGTGAGG+AGG | - | chr3.3:57548130-57548149 | MS.gene55664:intron | 60.0% | |
| CGGTCACAAGCCCGGGTAAA+AGG | + | chr3.3:57547765-57547784 | None:intergenic | 60.0% | |
| GGACAGGTAAGGAGTGGGTG+AGG | - | chr3.3:57548127-57548146 | MS.gene55664:intron | 60.0% | |
| GGCTTGTGACCGGCTATGCA+TGG | - | chr3.3:57547773-57547792 | MS.gene55664:intron | 60.0% | |
| GGGTGAGTAGTGACGATGGG+TGG | + | chr3.3:57550527-57550546 | None:intergenic | 60.0% | |
| GTGACCGGCTATGCATGGGA+AGG | - | chr3.3:57547778-57547797 | MS.gene55664:intron | 60.0% | |
| GTGCTCTTTCGGTGGATCGG+AGG | + | chr3.3:57550658-57550677 | None:intergenic | 60.0% | |
| TACCTTGCGTCTTGCGGGGA+TGG | + | chr3.3:57550358-57550377 | None:intergenic | 60.0% | |
| TCCCCGCAAGACGCAAGGTA+TGG | - | chr3.3:57550358-57550377 | MS.gene55664:intron | 60.0% | |
| TGCATAGCCGGTCACAAGCC+CGG | + | chr3.3:57547773-57547792 | None:intergenic | 60.0% | |
| TTGTCGAGGTGGGGTGGGTA+GGG | - | chr3.3:57547891-57547910 | MS.gene55664:intron | 60.0% | |
| ! | GTAGTGACGATGGGTGGTGG+TGG | + | chr3.3:57550521-57550540 | None:intergenic | 60.0% |
| !! | CAGTTTGGGTGTTGGGGGTC+TGG | + | chr3.3:57550577-57550596 | None:intergenic | 60.0% |
| !! | CGAGGGGTGCCCTGCTAATT+TGG | + | chr3.3:57550765-57550784 | None:intergenic | 60.0% |
| CTCTAGTGTACCGGGGGCGA+GGG | + | chr3.3:57550782-57550801 | None:intergenic | 65.0% | |
| GCATAGCCGGTCACAAGCCC+GGG | + | chr3.3:57547772-57547791 | None:intergenic | 65.0% | |
| TCTAGTGTACCGGGGGCGAG+GGG | + | chr3.3:57550781-57550800 | None:intergenic | 65.0% | |
| TCTCTAGTGTACCGGGGGCG+AGG | + | chr3.3:57550783-57550802 | None:intergenic | 65.0% | |
| TGTCGAGGTGGGGTGGGTAG+GGG | - | chr3.3:57547892-57547911 | MS.gene55664:intron | 65.0% | |
| !! | GGTCGGTGCTGGCAGTCTGT+GGG | - | chr3.3:57548189-57548208 | MS.gene55664:intron | 65.0% |
| !! | TGGTCGGTGCTGGCAGTCTG+TGG | - | chr3.3:57548188-57548207 | MS.gene55664:intron | 65.0% |
| CGCCATCCCCGCAAGACGCA+AGG | - | chr3.3:57550353-57550372 | MS.gene55664:intron | 70.0% | |
| TCGGTGGATCGGAGGTCGCG+AGG | + | chr3.3:57550650-57550669 | None:intergenic | 70.0% | |
| !! | CGGTGCTGGCAGTCTGTGGG+AGG | - | chr3.3:57548192-57548211 | MS.gene55664:intron | 70.0% |
| !! | AGCAGGGCACCCCTCGCCCC+CGG | - | chr3.3:57550769-57550788 | MS.gene55664:intron | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 57546842 | 57551653 | 57546842 | ID=MS.gene55664 |
| chr3.3 | mRNA | 57546842 | 57551653 | 57546842 | ID=MS.gene55664.t1;Parent=MS.gene55664 |
| chr3.3 | exon | 57551381 | 57551653 | 57551381 | ID=MS.gene55664.t1.exon1;Parent=MS.gene55664.t1 |
| chr3.3 | CDS | 57551381 | 57551653 | 57551381 | ID=cds.MS.gene55664.t1;Parent=MS.gene55664.t1 |
| chr3.3 | exon | 57551122 | 57551227 | 57551122 | ID=MS.gene55664.t1.exon2;Parent=MS.gene55664.t1 |
| chr3.3 | CDS | 57551122 | 57551227 | 57551122 | ID=cds.MS.gene55664.t1;Parent=MS.gene55664.t1 |
| chr3.3 | exon | 57549686 | 57549777 | 57549686 | ID=MS.gene55664.t1.exon3;Parent=MS.gene55664.t1 |
| chr3.3 | CDS | 57549686 | 57549777 | 57549686 | ID=cds.MS.gene55664.t1;Parent=MS.gene55664.t1 |
| chr3.3 | exon | 57549298 | 57549462 | 57549298 | ID=MS.gene55664.t1.exon4;Parent=MS.gene55664.t1 |
| chr3.3 | CDS | 57549298 | 57549462 | 57549298 | ID=cds.MS.gene55664.t1;Parent=MS.gene55664.t1 |
| chr3.3 | exon | 57548681 | 57548764 | 57548681 | ID=MS.gene55664.t1.exon5;Parent=MS.gene55664.t1 |
| chr3.3 | CDS | 57548681 | 57548764 | 57548681 | ID=cds.MS.gene55664.t1;Parent=MS.gene55664.t1 |
| chr3.3 | exon | 57547052 | 57547168 | 57547052 | ID=MS.gene55664.t1.exon6;Parent=MS.gene55664.t1 |
| chr3.3 | CDS | 57547052 | 57547168 | 57547052 | ID=cds.MS.gene55664.t1;Parent=MS.gene55664.t1 |
| chr3.3 | exon | 57546842 | 57546946 | 57546842 | ID=MS.gene55664.t1.exon7;Parent=MS.gene55664.t1 |
| chr3.3 | CDS | 57546842 | 57546946 | 57546842 | ID=cds.MS.gene55664.t1;Parent=MS.gene55664.t1 |
| Gene Sequence |
| Protein sequence |
