Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene049652.t1 | XP_003600584.1 | 85.4 | 336 | 39 | 2 | 1 | 336 | 1 | 326 | 2.50E-133 | 486.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene049652.t1 | G7J778 | 85.4 | 336 | 39 | 2 | 1 | 336 | 1 | 326 | 1.8e-133 | 486.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049254 | MS.gene049652 | 0.801944 | 7.09E-49 | -1.69E-46 |
| MS.gene049499 | MS.gene049652 | 0.802477 | 5.51E-49 | -1.69E-46 |
| MS.gene049652 | MS.gene051744 | 0.83452 | 2.86E-56 | -1.69E-46 |
| MS.gene049652 | MS.gene053094 | 0.815303 | 9.90E-52 | -1.69E-46 |
| MS.gene049652 | MS.gene054576 | 0.804727 | 1.88E-49 | -1.69E-46 |
| MS.gene049652 | MS.gene056699 | 0.834278 | 3.29E-56 | -1.69E-46 |
| MS.gene049652 | MS.gene057102 | 0.806888 | 6.61E-50 | -1.69E-46 |
| MS.gene049652 | MS.gene05985 | -0.821559 | 3.79E-53 | -1.69E-46 |
| MS.gene049652 | MS.gene060365 | 0.807292 | 5.43E-50 | -1.69E-46 |
| MS.gene049652 | MS.gene061188 | 0.801391 | 9.21E-49 | -1.69E-46 |
| MS.gene049652 | MS.gene06372 | 0.815788 | 7.73E-52 | -1.69E-46 |
| MS.gene049652 | MS.gene065039 | 0.821034 | 5.00E-53 | -1.69E-46 |
| MS.gene049652 | MS.gene065069 | 0.821232 | 4.51E-53 | -1.69E-46 |
| MS.gene049652 | MS.gene066513 | 0.850023 | 2.22E-60 | -1.69E-46 |
| MS.gene049652 | MS.gene070275 | 0.827124 | 1.86E-54 | -1.69E-46 |
| MS.gene049652 | MS.gene072116 | 0.800958 | 1.13E-48 | -1.69E-46 |
| MS.gene049652 | MS.gene073306 | 0.822436 | 2.37E-53 | -1.69E-46 |
| MS.gene049652 | MS.gene073670 | 0.814725 | 1.33E-51 | -1.69E-46 |
| MS.gene049652 | MS.gene07529 | 0.807414 | 5.11E-50 | -1.69E-46 |
| MS.gene049652 | MS.gene07815 | 0.804204 | 2.42E-49 | -1.69E-46 |
| MS.gene049652 | MS.gene20253 | 0.808897 | 2.47E-50 | -1.69E-46 |
| MS.gene049652 | MS.gene20707 | -0.819624 | 1.05E-52 | -1.69E-46 |
| MS.gene049652 | MS.gene25978 | 0.829987 | 3.78E-55 | -1.69E-46 |
| MS.gene049652 | MS.gene27516 | 0.805042 | 1.62E-49 | -1.69E-46 |
| MS.gene049652 | MS.gene29036 | 0.810045 | 1.40E-50 | -1.69E-46 |
| MS.gene049652 | MS.gene29096 | 0.805102 | 1.57E-49 | -1.69E-46 |
| MS.gene049652 | MS.gene29631 | 0.802847 | 4.62E-49 | -1.69E-46 |
| MS.gene049652 | MS.gene32184 | 0.81089 | 9.21E-51 | -1.69E-46 |
| MS.gene049652 | MS.gene32801 | 0.850578 | 1.55E-60 | -1.69E-46 |
| MS.gene049652 | MS.gene33650 | 0.801518 | 8.67E-49 | -1.69E-46 |
| MS.gene049652 | MS.gene33651 | 0.805684 | 1.19E-49 | -1.69E-46 |
| MS.gene049652 | MS.gene34340 | 0.832808 | 7.65E-56 | -1.69E-46 |
| MS.gene049652 | MS.gene34444 | 0.810279 | 1.25E-50 | -1.69E-46 |
| MS.gene049652 | MS.gene37570 | 0.804526 | 2.07E-49 | -1.69E-46 |
| MS.gene049652 | MS.gene39037 | 0.800431 | 1.45E-48 | -1.69E-46 |
| MS.gene049652 | MS.gene39314 | 0.80543 | 1.34E-49 | -1.69E-46 |
| MS.gene049652 | MS.gene40068 | 0.806374 | 8.49E-50 | -1.69E-46 |
| MS.gene049652 | MS.gene40079 | 0.805074 | 1.59E-49 | -1.69E-46 |
| MS.gene049652 | MS.gene40709 | 0.808432 | 3.11E-50 | -1.69E-46 |
| MS.gene049652 | MS.gene40711 | 0.80363 | 3.18E-49 | -1.69E-46 |
| MS.gene049652 | MS.gene40799 | 0.811603 | 6.45E-51 | -1.69E-46 |
| MS.gene049652 | MS.gene44179 | 0.816509 | 5.33E-52 | -1.69E-46 |
| MS.gene049652 | MS.gene47822 | 0.817015 | 4.10E-52 | -1.69E-46 |
| MS.gene049652 | MS.gene48037 | 0.822603 | 2.17E-53 | -1.69E-46 |
| MS.gene049652 | MS.gene54704 | 0.805927 | 1.05E-49 | -1.69E-46 |
| MS.gene049652 | MS.gene55664 | 0.805864 | 1.09E-49 | -1.69E-46 |
| MS.gene049652 | MS.gene57178 | 0.809638 | 1.71E-50 | -1.69E-46 |
| MS.gene049652 | MS.gene57360 | 0.801579 | 8.42E-49 | -1.69E-46 |
| MS.gene049652 | MS.gene58653 | 0.819437 | 1.16E-52 | -1.69E-46 |
| MS.gene049652 | MS.gene59540 | 0.804457 | 2.14E-49 | -1.69E-46 |
| MS.gene049652 | MS.gene61288 | 0.804031 | 2.63E-49 | -1.69E-46 |
| MS.gene049652 | MS.gene62676 | 0.825436 | 4.69E-54 | -1.69E-46 |
| MS.gene049652 | MS.gene62677 | 0.84749 | 1.12E-59 | -1.69E-46 |
| MS.gene049652 | MS.gene63333 | 0.804316 | 2.29E-49 | -1.69E-46 |
| MS.gene049652 | MS.gene64284 | 0.807705 | 4.44E-50 | -1.69E-46 |
| MS.gene049652 | MS.gene68002 | 0.816576 | 5.15E-52 | -1.69E-46 |
| MS.gene049652 | MS.gene69821 | 0.807877 | 4.08E-50 | -1.69E-46 |
| MS.gene049652 | MS.gene71879 | 0.811454 | 6.94E-51 | -1.69E-46 |
| MS.gene049652 | MS.gene71945 | 0.85341 | 2.43E-61 | -1.69E-46 |
| MS.gene049652 | MS.gene72026 | 0.800787 | 1.22E-48 | -1.69E-46 |
| MS.gene049652 | MS.gene74537 | 0.813942 | 1.98E-51 | -1.69E-46 |
| MS.gene049652 | MS.gene74604 | 0.836723 | 7.92E-57 | -1.69E-46 |
| MS.gene049652 | MS.gene74956 | 0.810198 | 1.30E-50 | -1.69E-46 |
| MS.gene049652 | MS.gene75521 | 0.801723 | 7.87E-49 | -1.69E-46 |
| MS.gene049652 | MS.gene76244 | 0.847124 | 1.41E-59 | -1.69E-46 |
| MS.gene049652 | MS.gene80631 | 0.829751 | 4.32E-55 | -1.69E-46 |
| MS.gene049652 | MS.gene82269 | 0.809752 | 1.62E-50 | -1.69E-46 |
| MS.gene049652 | MS.gene84484 | 0.811006 | 8.69E-51 | -1.69E-46 |
| MS.gene049652 | MS.gene87673 | 0.814649 | 1.38E-51 | -1.69E-46 |
| MS.gene049652 | MS.gene91204 | 0.828367 | 9.35E-55 | -1.69E-46 |
| MS.gene049652 | MS.gene92320 | 0.811796 | 5.85E-51 | -1.69E-46 |
| MS.gene049652 | MS.gene92348 | 0.814245 | 1.70E-51 | -1.69E-46 |
| MS.gene049652 | MS.gene92364 | 0.821794 | 3.34E-53 | -1.69E-46 |
| MS.gene049652 | MS.gene92775 | 0.822566 | 2.21E-53 | -1.69E-46 |
| MS.gene049652 | MS.gene95655 | 0.81971 | 1.01E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene049652.t1 | MTR_3g063950 | 84.524 | 336 | 42 | 2 | 1 | 336 | 1 | 326 | 1.87e-174 | 499 |
| MS.gene049652.t1 | MTR_3g063950 | 71.203 | 316 | 78 | 3 | 335 | 650 | 24 | 326 | 1.27e-134 | 398 |
| MS.gene049652.t1 | MTR_3g063940 | 65.579 | 337 | 107 | 3 | 1 | 335 | 1 | 330 | 3.67e-129 | 384 |
| MS.gene049652.t1 | MTR_3g063940 | 59.748 | 318 | 108 | 4 | 338 | 648 | 25 | 329 | 7.90e-107 | 327 |
| MS.gene049652.t1 | MTR_3g063940 | 63.534 | 266 | 88 | 3 | 1 | 264 | 1 | 259 | 5.91e-89 | 278 |
| MS.gene049652.t1 | MTR_3g063940 | 55.645 | 248 | 90 | 4 | 338 | 578 | 25 | 259 | 2.08e-67 | 222 |
| MS.gene049652.t1 | MTR_7g114660 | 46.178 | 314 | 131 | 4 | 338 | 643 | 104 | 387 | 5.46e-59 | 203 |
| MS.gene049652.t1 | MTR_7g114660 | 43.114 | 334 | 131 | 7 | 15 | 329 | 94 | 387 | 2.27e-56 | 196 |
| MS.gene049652.t1 | MTR_8g465010 | 53.110 | 209 | 68 | 3 | 435 | 643 | 204 | 382 | 1.80e-55 | 194 |
| MS.gene049652.t1 | MTR_8g465010 | 52.153 | 209 | 70 | 4 | 121 | 329 | 204 | 382 | 6.52e-52 | 184 |
| MS.gene049652.t1 | MTR_8g031500 | 60.870 | 69 | 26 | 1 | 575 | 643 | 275 | 342 | 8.61e-16 | 79.7 |
| MS.gene049652.t1 | MTR_8g031500 | 57.971 | 69 | 28 | 1 | 261 | 329 | 275 | 342 | 2.14e-14 | 75.5 |
| MS.gene049652.t1 | MTR_8g031500 | 55.072 | 69 | 30 | 1 | 435 | 503 | 219 | 286 | 5.99e-14 | 73.9 |
| MS.gene049652.t1 | MTR_8g031500 | 51.389 | 72 | 34 | 1 | 121 | 192 | 219 | 289 | 1.51e-12 | 69.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene049652.t1 | AT1G54520 | 47.664 | 214 | 82 | 4 | 430 | 643 | 205 | 388 | 2.27e-48 | 174 |
| MS.gene049652.t1 | AT1G54520 | 47.847 | 209 | 79 | 4 | 121 | 329 | 210 | 388 | 1.78e-47 | 172 |
Find 141 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACTCAGCCTTGCTGTCATTT+TGG | 0.170688 | 3.2:-59525820 | MS.gene049652:CDS |
| TTCAGGCTGGTGAGGTATTA+TGG | 0.225096 | 3.2:-59528736 | MS.gene049652:intron |
| CTTTGCAGGTGGATCTTAAA+AGG | 0.267388 | 3.2:-59522825 | MS.gene049652:intron |
| CTTTGCAGGTGGATCTTAAA+AGG | 0.280869 | 3.2:-59538615 | MS.gene049652:intron |
| TTCAGGCTGGTGAGGTACTA+TGG | 0.302452 | 3.2:-59520817 | MS.gene049652:intron |
| AGCTGCTAATACACGGTATA+AGG | 0.310599 | 3.2:-59540798 | MS.gene049652:CDS |
| GTTGTCTAAGGTTGGAATCT+TGG | 0.323997 | 3.2:-59525595 | MS.gene049652:intron |
| GAAGGGAGCTGAAGATTTAA+AGG | 0.325037 | 3.2:-59528895 | MS.gene049652:CDS |
| GAAGGGTGCTGAATATTTAA+AGG | 0.326121 | 3.2:-59520987 | MS.gene049652:CDS |
| GCCTCCTCAGGAGGTGTTGC+GGG | 0.330241 | 3.2:-59541241 | MS.gene049652:CDS |
| ATTCAAATTCTCCAAGTGTA+TGG | 0.331332 | 3.2:-59541153 | MS.gene049652:CDS |
| GCATCATCAGCATCACTAGA+AGG | 0.337980 | 3.2:+59541106 | None:intergenic |
| TATTCAGCACCCTTCATGTT+AGG | 0.357134 | 3.2:+59520995 | None:intergenic |
| TCTTCAGCTCCCTTCATGTT+AGG | 0.359596 | 3.2:+59528903 | None:intergenic |
| TTGTTCATTGCTGGCATAAT+CGG | 0.364981 | 3.2:-59541043 | MS.gene049652:CDS |
| CCCTTTCTTCAATTGATAGT+TGG | 0.380058 | 3.2:+59522773 | None:intergenic |
| CCCTTTCTTCAATTGATAGT+TGG | 0.380058 | 3.2:+59538563 | None:intergenic |
| AGTTACTGTTCTCAAGCTTC+AGG | 0.384139 | 3.2:-59540975 | MS.gene049652:intron |
| CTTATGTTAGGTAACAATAT+TGG | 0.386874 | 3.2:-59521044 | MS.gene049652:intron |
| AGTTACTGTGCTCAAGCTTC+AGG | 0.387740 | 3.2:-59525763 | MS.gene049652:intron |
| AGCAGCTAATACATCGTCTA+AGG | 0.392391 | 3.2:-59525526 | MS.gene049652:CDS |
| AGCATGTTTCTCCACCCTCC+TGG | 0.401006 | 3.2:+59522800 | None:intergenic |
| TGATTCAGAGGATGATTTAG+AGG | 0.401140 | 3.2:+59541186 | None:intergenic |
| TGAAGCTTGAGAACAGTAAC+TGG | 0.404982 | 3.2:+59540977 | None:intergenic |
| AGCTTAAATCCCTTCTCTAC+TGG | 0.408193 | 3.2:-59528860 | MS.gene049652:CDS |
| TTTGTTTAAGGTTGGAATGT+TGG | 0.409336 | 3.2:-59540867 | MS.gene049652:intron |
| CATTTCACATTTCATAGACT+TGG | 0.413036 | 3.2:+59528649 | None:intergenic |
| GCCTCTTCAGGAGGTGTCAT+GGG | 0.421732 | 3.2:-59526032 | MS.gene049652:CDS |
| CTATACGTCTTTGTAAAGAA+TGG | 0.428246 | 3.2:-59525797 | MS.gene049652:CDS |
| CCTATGTTAGGTAACAATAT+TGG | 0.429417 | 3.2:-59528952 | MS.gene049652:intron |
| AACTCAGTTTCAGCCTCCTC+AGG | 0.433204 | 3.2:-59541253 | MS.gene049652:CDS |
| GGGTTTCATCCTCTCTCTGT+GGG | 0.434025 | 3.2:+59520792 | None:intergenic |
| GGTTGGAATGTTGGATGAGA+TGG | 0.439180 | 3.2:-59540858 | MS.gene049652:CDS |
| AACAGAGACAATACAAACTT+TGG | 0.439999 | 3.2:-59538765 | MS.gene049652:intron |
| GGGTGTCATCCTCTTTCTGT+GGG | 0.443126 | 3.2:+59528711 | None:intergenic |
| AGAGGATGATTTAGAGGATG+AGG | 0.443481 | 3.2:+59541192 | None:intergenic |
| CATCATCGTTACTGTATAGC+AGG | 0.445697 | 3.2:-59522948 | MS.gene049652:CDS |
| AGACGATGTATTAGCTGCTT+CGG | 0.451386 | 3.2:+59525530 | None:intergenic |
| ATTCAAGTTCTCGACATGTA+AGG | 0.451638 | 3.2:-59525926 | MS.gene049652:CDS |
| ACCAACTATCAATTGAAGAA+AGG | 0.462903 | 3.2:-59522774 | MS.gene049652:CDS |
| ACCAACTATCAATTGAAGAA+AGG | 0.462903 | 3.2:-59538564 | MS.gene049652:CDS |
| TAAGAAGCCAGAGTTATGAT+AGG | 0.462997 | 3.2:-59538486 | MS.gene049652:CDS |
| GAAACTTGAGGATGAGGATG+AGG | 0.467659 | 3.2:+59525980 | None:intergenic |
| AGCCTCTTCAGGAGGTGTCA+TGG | 0.467690 | 3.2:-59526033 | MS.gene049652:CDS |
| CCAACTATCAATTGAAGAAA+GGG | 0.475889 | 3.2:-59522773 | MS.gene049652:CDS |
| CCAACTATCAATTGAAGAAA+GGG | 0.475889 | 3.2:-59538563 | MS.gene049652:CDS |
| TCTAAGGTTGGAATCTTGGA+TGG | 0.480043 | 3.2:-59525591 | MS.gene049652:intron |
| TATACGTCTTTGTAAAGAAT+GGG | 0.483085 | 3.2:-59525796 | MS.gene049652:CDS |
| CATCATGGTTACTGTATAGC+AGG | 0.483872 | 3.2:-59538737 | MS.gene049652:CDS |
| ACTTGAATACCTTGTGGATG+AGG | 0.484874 | 3.2:+59525941 | None:intergenic |
| CAATACAAAGGGATCTAACT+AGG | 0.489233 | 3.2:-59525557 | MS.gene049652:CDS |
| AGCCTCCTCAGGAGGTGTTG+CGG | 0.492206 | 3.2:-59541242 | MS.gene049652:CDS |
| CAAACTTTGGATAAACATCA+TGG | 0.498262 | 3.2:-59538752 | MS.gene049652:CDS |
| TCCTCAGGAGGTGTTGCGGG+AGG | 0.500511 | 3.2:-59541238 | MS.gene049652:CDS |
| AGGGTGTCATCCTCTTTCTG+TGG | 0.504682 | 3.2:+59528710 | None:intergenic |
| AGGAGGCTGAAACTGAGTTA+AGG | 0.510377 | 3.2:+59541257 | None:intergenic |
| CATCATCAGCATCACTAGAA+GGG | 0.510641 | 3.2:+59541107 | None:intergenic |
| TTCAAATTCTCCAAGTGTAT+GGG | 0.512876 | 3.2:-59541152 | MS.gene049652:CDS |
| GTTGGAATCTTGGATGGGAT+GGG | 0.516919 | 3.2:-59525585 | MS.gene049652:CDS |
| GGTTGGAATCTTGGATGGGA+TGG | 0.518371 | 3.2:-59525586 | MS.gene049652:CDS |
| TGCTGATGATGCTGATGATA+AGG | 0.519261 | 3.2:-59541095 | MS.gene049652:CDS |
| CCCTCCCGCAACACCTCCTG+AGG | 0.524621 | 3.2:+59541237 | None:intergenic |
| ATAGATCTCTCCAGTAGAGA+AGG | 0.524728 | 3.2:+59528850 | None:intergenic |
| ATTATGGACCCCACAGAAAG+AGG | 0.525005 | 3.2:-59528720 | MS.gene049652:CDS |
| CATGTAAGGGCACAACATCA+TGG | 0.525179 | 3.2:-59525912 | MS.gene049652:CDS |
| GATGGGATGTACATTACAAA+GGG | 0.528262 | 3.2:-59540840 | MS.gene049652:CDS |
| TCCCGCAACACCTCCTGAGG+AGG | 0.529539 | 3.2:+59541240 | None:intergenic |
| ACAATATTGGTAGCTACTAA+AGG | 0.530785 | 3.2:-59521031 | MS.gene049652:CDS |
| GATAAGGTTACAAATGATGA+AGG | 0.532218 | 3.2:-59541079 | MS.gene049652:CDS |
| TGCTAAACCTATCATAACTC+TGG | 0.532572 | 3.2:+59538479 | None:intergenic |
| TTCATAGACTTGGCTAGCTG+AGG | 0.535245 | 3.2:+59528659 | None:intergenic |
| CATTACAAAGGGATCTAGCT+AGG | 0.535268 | 3.2:-59540829 | MS.gene049652:CDS |
| CATGGGAATGGTACCGCTGA+TGG | 0.536087 | 3.2:-59525894 | MS.gene049652:CDS |
| TTCATAGACTTAGCTAGCTG+AGG | 0.537869 | 3.2:+59520740 | None:intergenic |
| GAGGATGAAACCCTTTCAGA+TGG | 0.539392 | 3.2:-59520782 | MS.gene049652:CDS |
| ACTGAAGAAACTTGAGGATG+AGG | 0.542158 | 3.2:+59525974 | None:intergenic |
| CCTCAGGAGGTGTTGCGGGA+GGG | 0.546260 | 3.2:-59541237 | MS.gene049652:CDS |
| TGCTAAACCGATCATAACTC+TGG | 0.546715 | 3.2:+59522689 | None:intergenic |
| GTTGGAATGTTGGATGAGAT+GGG | 0.546768 | 3.2:-59540857 | MS.gene049652:CDS |
| GAAATTCTTTCAGGCTGGTG+AGG | 0.547725 | 3.2:-59520825 | MS.gene049652:intron |
| GAAATTCTTTCAGGCTGGTG+AGG | 0.547725 | 3.2:-59528744 | MS.gene049652:intron |
| GAGGATGACACCCTTTCAGA+TGG | 0.549775 | 3.2:-59528701 | MS.gene049652:CDS |
| GGTGGATCTTAAAAGGAGCC+AGG | 0.555856 | 3.2:-59522818 | MS.gene049652:CDS |
| GGTGGATCTTAAAAGGAGCC+AGG | 0.555856 | 3.2:-59538608 | MS.gene049652:CDS |
| TCCCATGACACCTCCTGAAG+AGG | 0.558934 | 3.2:+59526031 | None:intergenic |
| TCATAGACTTAGCTAGCTGA+GGG | 0.559467 | 3.2:+59520741 | None:intergenic |
| TGATGTTGCACCCATACACT+TGG | 0.564612 | 3.2:+59541142 | None:intergenic |
| AAGGTTACAAATGATGAAGG+AGG | 0.565019 | 3.2:-59541076 | MS.gene049652:CDS |
| GATGGGATGCACAATACAAA+GGG | 0.566038 | 3.2:-59525568 | MS.gene049652:CDS |
| TTCAAGTTCTCGACATGTAA+GGG | 0.567486 | 3.2:-59525925 | MS.gene049652:CDS |
| ATCACTAGAAGGGGTAACAT+AGG | 0.569608 | 3.2:+59541117 | None:intergenic |
| AGGGTTTCATCCTCTCTCTG+TGG | 0.571271 | 3.2:+59520791 | None:intergenic |
| ACATAAGCTACCTAACATGA+AGG | 0.574557 | 3.2:-59528913 | MS.gene049652:CDS |
| ACATAAGCTACCTAACATGA+AGG | 0.574967 | 3.2:-59521005 | MS.gene049652:CDS |
| GAATGGTACCGCTGATGGTA+AGG | 0.575256 | 3.2:-59525889 | MS.gene049652:CDS |
| GGATGGGATGCACAATACAA+AGG | 0.581338 | 3.2:-59525569 | MS.gene049652:CDS |
| ATGTAAGGGCACAACATCAT+GGG | 0.583859 | 3.2:-59525911 | MS.gene049652:CDS |
| ATCTGAACTGAAGAAACTTG+AGG | 0.585293 | 3.2:+59525968 | None:intergenic |
| TCATAGACTTGGCTAGCTGA+GGG | 0.586319 | 3.2:+59528660 | None:intergenic |
| TGTGAAATGAATAAACAAGT+GGG | 0.587901 | 3.2:-59528635 | MS.gene049652:intron |
| AGATGGGATGTACATTACAA+AGG | 0.592518 | 3.2:-59540841 | MS.gene049652:CDS |
| CAGATTCTTCCTCATCCACA+AGG | 0.598144 | 3.2:-59525950 | MS.gene049652:CDS |
| TAGATCTCTCCAGTAGAGAA+GGG | 0.599653 | 3.2:+59528851 | None:intergenic |
| ATCATCAGCATCACTAGAAG+GGG | 0.601364 | 3.2:+59541108 | None:intergenic |
| GGTTACAAATGATGAAGGAG+GGG | 0.602074 | 3.2:-59541074 | MS.gene049652:CDS |
| GATCTTAAAAGGAGCCAGGA+GGG | 0.605501 | 3.2:-59522814 | MS.gene049652:CDS |
| GATCTTAAAAGGAGCCAGGA+GGG | 0.605501 | 3.2:-59538604 | MS.gene049652:CDS |
| ACTATGGACCCCACAGAGAG+AGG | 0.608037 | 3.2:-59520801 | MS.gene049652:CDS |
| CTAAGGTTGGAATCTTGGAT+GGG | 0.608059 | 3.2:-59525590 | MS.gene049652:intron |
| GTTTAGCAATGAATATTCCA+CGG | 0.610272 | 3.2:-59522674 | MS.gene049652:intron |
| AGGTTACAAATGATGAAGGA+GGG | 0.613385 | 3.2:-59541075 | MS.gene049652:CDS |
| CAAGTGATGAAATTGAAACA+TGG | 0.617803 | 3.2:-59525863 | MS.gene049652:CDS |
| AGGGCACAACATCATGGGAA+TGG | 0.618730 | 3.2:-59525906 | MS.gene049652:CDS |
| CTTAAAAGGAGCCAGGAGGG+TGG | 0.619800 | 3.2:-59522811 | MS.gene049652:CDS |
| CTTAAAAGGAGCCAGGAGGG+TGG | 0.619800 | 3.2:-59538601 | MS.gene049652:CDS |
| TAAGAAGCCAGAGTTATGAT+CGG | 0.619942 | 3.2:-59522696 | MS.gene049652:CDS |
| GCTAATACATCGTCTAAGGA+AGG | 0.620285 | 3.2:-59525522 | MS.gene049652:CDS |
| GCTAATACACGGTATAAGGA+AGG | 0.628417 | 3.2:-59540794 | MS.gene049652:CDS |
| TCAGTTTCAGCCTCCTCAGG+AGG | 0.630087 | 3.2:-59541250 | MS.gene049652:CDS |
| GTTTAGCAATGAATATTCCA+CGG | 0.633256 | 3.2:-59538464 | MS.gene049652:intron |
| ATCATCGTTACTGTATAGCA+GGG | 0.635807 | 3.2:-59522947 | MS.gene049652:CDS |
| TTGCAGAAGCTGCTAATACA+CGG | 0.637222 | 3.2:-59540805 | MS.gene049652:CDS |
| TTGTGTTGTTATCATTAACA+TGG | 0.637242 | 3.2:-59541282 | MS.gene049652:CDS |
| ATGTGAAATGAATAAACAAG+TGG | 0.638323 | 3.2:-59528636 | MS.gene049652:CDS |
| ACAATATTGGTAGCTACTAG+AGG | 0.643540 | 3.2:-59528939 | MS.gene049652:CDS |
| GGTGTGAGCTGTTTATTGAA+AGG | 0.648813 | 3.2:-59525501 | MS.gene049652:intron |
| ATAAGTTGTGAATGATTCAG+AGG | 0.648863 | 3.2:+59541174 | None:intergenic |
| TCTTCAGGAGGTGTCATGGG+AGG | 0.650318 | 3.2:-59526029 | MS.gene049652:CDS |
| GGTTTCATCCTCTCTCTGTG+GGG | 0.650477 | 3.2:+59520793 | None:intergenic |
| CATAAGCTACCTAACATGAA+GGG | 0.659099 | 3.2:-59528912 | MS.gene049652:CDS |
| CATAAGCTACCTAACATGAA+GGG | 0.667978 | 3.2:-59521004 | MS.gene049652:CDS |
| GGCGTGTGCTGTTTATTGAG+AGG | 0.672280 | 3.2:-59540773 | MS.gene049652:intron |
| GGTGTCATCCTCTTTCTGTG+GGG | 0.672684 | 3.2:+59528712 | None:intergenic |
| TCGAGAACTTGAATACCTTG+TGG | 0.680648 | 3.2:+59525935 | None:intergenic |
| ACTTGCAACCTTACCATCAG+CGG | 0.690100 | 3.2:+59525881 | None:intergenic |
| GGATCTTAAAAGGAGCCAGG+AGG | 0.690908 | 3.2:-59522815 | MS.gene049652:CDS |
| GGATCTTAAAAGGAGCCAGG+AGG | 0.690908 | 3.2:-59538605 | MS.gene049652:CDS |
| GTATAGCCAAAATGACAGCA+AGG | 0.692496 | 3.2:+59525814 | None:intergenic |
| GTTCGACAACAAGTACATAG+TGG | 0.695714 | 3.2:-59522059 | MS.gene049652:intron |
| GTTCGACAACAAGTACATAG+TGG | 0.695714 | 3.2:-59537849 | MS.gene049652:intron |
| TTGTTGTCGAACCCACTGCG+AGG | 0.698682 | 3.2:+59537860 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.2 | gene | 59520730 | 59541353 | 59520730 | ID=MS.gene049652 |
| chr3.2 | mRNA | 59520730 | 59541353 | 59520730 | ID=MS.gene049652.t1;Parent=MS.gene049652 |
| chr3.2 | exon | 59540976 | 59541353 | 59540976 | ID=MS.gene049652.t1.exon1;Parent=MS.gene049652.t1 |
| chr3.2 | CDS | 59540976 | 59541353 | 59540976 | ID=cds.MS.gene049652.t1;Parent=MS.gene049652.t1 |
| chr3.2 | exon | 59540774 | 59540879 | 59540774 | ID=MS.gene049652.t1.exon2;Parent=MS.gene049652.t1 |
| chr3.2 | CDS | 59540774 | 59540879 | 59540774 | ID=cds.MS.gene049652.t1;Parent=MS.gene049652.t1 |
| chr3.2 | exon | 59538727 | 59538782 | 59538727 | ID=MS.gene049652.t1.exon3;Parent=MS.gene049652.t1 |
| chr3.2 | CDS | 59538727 | 59538782 | 59538727 | ID=cds.MS.gene049652.t1;Parent=MS.gene049652.t1 |
| chr3.2 | exon | 59538465 | 59538629 | 59538465 | ID=MS.gene049652.t1.exon4;Parent=MS.gene049652.t1 |
| chr3.2 | CDS | 59538465 | 59538629 | 59538465 | ID=cds.MS.gene049652.t1;Parent=MS.gene049652.t1 |
| chr3.2 | exon | 59537850 | 59537933 | 59537850 | ID=MS.gene049652.t1.exon5;Parent=MS.gene049652.t1 |
| chr3.2 | CDS | 59537850 | 59537933 | 59537850 | ID=cds.MS.gene049652.t1;Parent=MS.gene049652.t1 |
| chr3.2 | exon | 59528848 | 59528964 | 59528848 | ID=MS.gene049652.t1.exon6;Parent=MS.gene049652.t1 |
| chr3.2 | CDS | 59528848 | 59528964 | 59528848 | ID=cds.MS.gene049652.t1;Parent=MS.gene049652.t1 |
| chr3.2 | exon | 59528636 | 59528753 | 59528636 | ID=MS.gene049652.t1.exon7;Parent=MS.gene049652.t1 |
| chr3.2 | CDS | 59528636 | 59528753 | 59528636 | ID=cds.MS.gene049652.t1;Parent=MS.gene049652.t1 |
| chr3.2 | exon | 59525764 | 59526059 | 59525764 | ID=MS.gene049652.t1.exon8;Parent=MS.gene049652.t1 |
| chr3.2 | CDS | 59525764 | 59526059 | 59525764 | ID=cds.MS.gene049652.t1;Parent=MS.gene049652.t1 |
| chr3.2 | exon | 59525502 | 59525607 | 59525502 | ID=MS.gene049652.t1.exon9;Parent=MS.gene049652.t1 |
| chr3.2 | CDS | 59525502 | 59525607 | 59525502 | ID=cds.MS.gene049652.t1;Parent=MS.gene049652.t1 |
| chr3.2 | exon | 59522938 | 59522993 | 59522938 | ID=MS.gene049652.t1.exon10;Parent=MS.gene049652.t1 |
| chr3.2 | CDS | 59522938 | 59522993 | 59522938 | ID=cds.MS.gene049652.t1;Parent=MS.gene049652.t1 |
| chr3.2 | exon | 59522675 | 59522839 | 59522675 | ID=MS.gene049652.t1.exon11;Parent=MS.gene049652.t1 |
| chr3.2 | CDS | 59522675 | 59522839 | 59522675 | ID=cds.MS.gene049652.t1;Parent=MS.gene049652.t1 |
| chr3.2 | exon | 59522060 | 59522143 | 59522060 | ID=MS.gene049652.t1.exon12;Parent=MS.gene049652.t1 |
| chr3.2 | CDS | 59522060 | 59522143 | 59522060 | ID=cds.MS.gene049652.t1;Parent=MS.gene049652.t1 |
| chr3.2 | exon | 59520940 | 59521056 | 59520940 | ID=MS.gene049652.t1.exon13;Parent=MS.gene049652.t1 |
| chr3.2 | CDS | 59520940 | 59521056 | 59520940 | ID=cds.MS.gene049652.t1;Parent=MS.gene049652.t1 |
| chr3.2 | exon | 59520730 | 59520834 | 59520730 | ID=MS.gene049652.t1.exon14;Parent=MS.gene049652.t1 |
| chr3.2 | CDS | 59520730 | 59520834 | 59520730 | ID=cds.MS.gene049652.t1;Parent=MS.gene049652.t1 |
| Gene Sequence |
| Protein sequence |
