Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene55668.t1 | RHN68031.1 | 84.2 | 691 | 62 | 4 | 1 | 645 | 1 | 690 | 0.00E+00 | 1134.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene55668.t1 | Q9SHY2 | 71.1 | 667 | 141 | 6 | 26 | 643 | 22 | 685 | 3.1e-273 | 942.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene55668.t1 | A0A396ITK6 | 84.2 | 691 | 62 | 4 | 1 | 645 | 1 | 690 | 0.0e+00 | 1134.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene05216 | MS.gene55668 | PPI |
| MS.gene55668 | MS.gene57831 | PPI |
| MS.gene55668 | MS.gene37726 | PPI |
| MS.gene45566 | MS.gene55668 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene55668.t1 | MTR_5g091600 | 81.818 | 693 | 67 | 6 | 1 | 645 | 1 | 682 | 0.0 | 1095 |
| MS.gene55668.t1 | MTR_3g063520 | 84.081 | 691 | 63 | 4 | 1 | 645 | 1 | 690 | 0.0 | 1084 |
| MS.gene55668.t1 | MTR_3g063490 | 78.417 | 695 | 97 | 5 | 1 | 643 | 1 | 694 | 0.0 | 1066 |
| MS.gene55668.t1 | MTR_6g077870 | 67.771 | 664 | 169 | 5 | 26 | 645 | 50 | 712 | 0.0 | 914 |
| MS.gene55668.t1 | MTR_6g077870 | 71.262 | 515 | 136 | 3 | 142 | 645 | 38 | 551 | 0.0 | 769 |
| MS.gene55668.t1 | MTR_7g028250 | 53.404 | 661 | 239 | 9 | 34 | 636 | 30 | 679 | 0.0 | 698 |
| MS.gene55668.t1 | MTR_3g092090 | 51.212 | 660 | 265 | 7 | 20 | 630 | 12 | 663 | 0.0 | 674 |
| MS.gene55668.t1 | MTR_3g092090 | 51.002 | 649 | 261 | 7 | 20 | 619 | 12 | 652 | 0.0 | 657 |
| MS.gene55668.t1 | MTR_1g007580 | 48.296 | 675 | 283 | 9 | 19 | 633 | 4 | 672 | 0.0 | 646 |
| MS.gene55668.t1 | MTR_1g077840 | 47.734 | 662 | 290 | 8 | 20 | 632 | 25 | 679 | 0.0 | 646 |
| MS.gene55668.t1 | MTR_0312s0020 | 47.813 | 663 | 290 | 7 | 20 | 633 | 17 | 672 | 0.0 | 641 |
| MS.gene55668.t1 | MTR_1g007540 | 47.813 | 663 | 290 | 7 | 20 | 633 | 17 | 672 | 0.0 | 641 |
| MS.gene55668.t1 | MTR_5g091615 | 88.125 | 160 | 19 | 0 | 482 | 641 | 59 | 218 | 9.04e-90 | 281 |
| MS.gene55668.t1 | MTR_1626s0010 | 50.847 | 236 | 112 | 2 | 174 | 409 | 4 | 235 | 6.28e-81 | 256 |
| MS.gene55668.t1 | MTR_0312s0050 | 49.593 | 123 | 51 | 3 | 16 | 127 | 1 | 123 | 4.87e-32 | 120 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene55668.t1 | AT1G65730 | 70.833 | 672 | 142 | 7 | 21 | 643 | 19 | 685 | 0.0 | 957 |
| MS.gene55668.t1 | AT3G17650 | 66.617 | 665 | 172 | 5 | 29 | 643 | 46 | 710 | 0.0 | 872 |
| MS.gene55668.t1 | AT3G17650 | 66.617 | 665 | 172 | 5 | 29 | 643 | 46 | 710 | 0.0 | 872 |
| MS.gene55668.t1 | AT1G48370 | 65.766 | 666 | 177 | 5 | 29 | 643 | 55 | 720 | 0.0 | 853 |
| MS.gene55668.t1 | AT1G48370 | 69.171 | 519 | 143 | 3 | 142 | 643 | 39 | 557 | 0.0 | 712 |
| MS.gene55668.t1 | AT3G27020 | 53.073 | 667 | 259 | 7 | 22 | 636 | 12 | 676 | 0.0 | 704 |
| MS.gene55668.t1 | AT5G53550 | 52.374 | 674 | 261 | 8 | 8 | 631 | 6 | 669 | 0.0 | 689 |
| MS.gene55668.t1 | AT5G53550 | 52.374 | 674 | 261 | 8 | 8 | 631 | 6 | 669 | 0.0 | 689 |
| MS.gene55668.t1 | AT5G53550 | 52.374 | 674 | 261 | 8 | 8 | 631 | 6 | 669 | 0.0 | 689 |
| MS.gene55668.t1 | AT5G53550 | 52.374 | 674 | 261 | 8 | 8 | 631 | 6 | 669 | 0.0 | 689 |
| MS.gene55668.t1 | AT5G53550 | 52.374 | 674 | 261 | 8 | 8 | 631 | 6 | 669 | 0.0 | 689 |
| MS.gene55668.t1 | AT4G24120 | 50.000 | 680 | 276 | 8 | 1 | 632 | 9 | 672 | 0.0 | 670 |
| MS.gene55668.t1 | AT5G41000 | 51.084 | 646 | 264 | 6 | 35 | 630 | 24 | 667 | 0.0 | 667 |
| MS.gene55668.t1 | AT5G24380 | 50.228 | 659 | 273 | 7 | 22 | 630 | 7 | 660 | 0.0 | 657 |
| MS.gene55668.t1 | AT5G41000 | 48.916 | 646 | 253 | 7 | 35 | 630 | 24 | 642 | 0.0 | 627 |
| MS.gene55668.t1 | AT5G53550 | 58.200 | 500 | 191 | 4 | 142 | 631 | 16 | 507 | 0.0 | 588 |
| MS.gene55668.t1 | AT5G41000 | 53.955 | 493 | 214 | 4 | 149 | 630 | 1 | 491 | 0.0 | 552 |
| MS.gene55668.t1 | AT5G45450 | 65.138 | 218 | 70 | 1 | 426 | 643 | 1 | 212 | 7.39e-96 | 294 |
Find 152 sgRNAs with CRISPR-Local
Find 233 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATGTTTCTGCTGGGTTGTT+AGG | 0.216597 | 3.3:-57330531 | MS.gene55668:CDS |
| GAAGCTTGATATTGTTTATT+TGG | 0.238786 | 3.3:-57328008 | MS.gene55668:CDS |
| GTTCTTGGCACAACTCTTAT+AGG | 0.241739 | 3.3:-57328849 | MS.gene55668:CDS |
| GCTAAGGTTGATAAGTTCTT+AGG | 0.244541 | 3.3:-57327829 | MS.gene55668:CDS |
| GAGGAGATCTCTGTGGAAAA+AGG | 0.248700 | 3.3:-57330690 | MS.gene55668:CDS |
| ATGTTTGTGAGCCAAGTTAT+TGG | 0.272519 | 3.3:-57328351 | MS.gene55668:CDS |
| GCCGGTGCCATGATTATTAA+TGG | 0.276061 | 3.3:-57328138 | MS.gene55668:CDS |
| TACAACTTTGGGAAAGTTCT+TGG | 0.281237 | 3.3:-57328864 | MS.gene55668:CDS |
| TGATATGTGGAGATGGAATT+TGG | 0.283833 | 3.3:-57327930 | MS.gene55668:CDS |
| AACGAAATATTGGTTATATA+TGG | 0.289135 | 3.3:+57329330 | None:intergenic |
| ACCGATCAACAACGAAATAT+TGG | 0.300050 | 3.3:+57329320 | None:intergenic |
| CCCTCATGGTTCGCAATTGC+AGG | 0.302996 | 3.3:-57328699 | MS.gene55668:CDS |
| GTATTCTCCTGTCTGGTAAA+AGG | 0.329015 | 3.3:+57330450 | None:intergenic |
| CCTTCGTTGAATGTTTCTGC+TGG | 0.339721 | 3.3:-57330540 | MS.gene55668:CDS |
| AAATTAGCCATCTTCGCTAT+TGG | 0.346002 | 3.3:-57328513 | MS.gene55668:CDS |
| TGATCGGTGGAATTCTTTCA+TGG | 0.350906 | 3.3:-57329305 | MS.gene55668:CDS |
| CCATCTTCGCTATTGGTGCT+TGG | 0.352652 | 3.3:-57328506 | MS.gene55668:CDS |
| TTATTTGGCAGAAGGTTGAT+AGG | 0.352931 | 3.3:-57327993 | MS.gene55668:CDS |
| AAGTAGCTTCCAATGTAAAA+TGG | 0.358086 | 3.3:+57328051 | None:intergenic |
| ATAGGCATAGCAATGATTCT+TGG | 0.363000 | 3.3:-57328897 | MS.gene55668:CDS |
| TTTGCAAACTTCCCCACATT+TGG | 0.363476 | 3.3:-57329652 | MS.gene55668:CDS |
| AGGGTTAAGGCTGATGCATT+TGG | 0.365863 | 3.3:-57327973 | MS.gene55668:CDS |
| TAGGTTTGTATAAACAATTA+TGG | 0.370836 | 3.3:-57328830 | MS.gene55668:CDS |
| GACAAGAATTTCATGCAAAT+AGG | 0.377015 | 3.3:+57327865 | None:intergenic |
| TGGCTATTCTACAACGCTTT+CGG | 0.377582 | 3.3:-57328291 | MS.gene55668:CDS |
| GTAGGGGAGAGAGGAGCATT+TGG | 0.378591 | 3.3:+57328774 | None:intergenic |
| GACACCACATGCTGCTAAAC+CGG | 0.383267 | 3.3:+57328455 | None:intergenic |
| TGGCTCACAAACATGGATTT+CGG | 0.390893 | 3.3:+57328360 | None:intergenic |
| GTGATGGTCTATACAACTTT+GGG | 0.399347 | 3.3:-57328875 | MS.gene55668:CDS |
| GGTGATGGTCTATACAACTT+TGG | 0.401168 | 3.3:-57328876 | MS.gene55668:CDS |
| GTTTGGCACCTTCTGATGTA+TGG | 0.401190 | 3.3:+57329773 | None:intergenic |
| ATGAAGTTGAATCTCACAAC+TGG | 0.401497 | 3.3:-57330570 | MS.gene55668:CDS |
| TTCGCTATTGGTGCTTGGGC+AGG | 0.404021 | 3.3:-57328501 | MS.gene55668:CDS |
| TTTCGATAAACGAGGGCGTT+AGG | 0.407080 | 3.3:+57328234 | None:intergenic |
| TGTTCCTACGTGGCAGAAAC+AGG | 0.407557 | 3.3:-57330652 | MS.gene55668:CDS |
| CTGCTTTGTTTGAGATCAGC+AGG | 0.407652 | 3.3:+57329237 | None:intergenic |
| CATCTTCGCTATTGGTGCTT+GGG | 0.418097 | 3.3:-57328505 | MS.gene55668:CDS |
| GCAGAAGGTTGATAGGGTTA+AGG | 0.423744 | 3.3:-57327986 | MS.gene55668:CDS |
| CTTATGCAAGACTTCAAAAC+AGG | 0.423970 | 3.3:-57328402 | MS.gene55668:CDS |
| GGCAGAAACAGGTTACGGTT+AGG | 0.425396 | 3.3:-57330641 | MS.gene55668:CDS |
| TAAACGAGGGCGTTAGGTGC+AGG | 0.426821 | 3.3:+57328240 | None:intergenic |
| CGGCATGGCTGCGGTTGCAC+CGG | 0.427222 | 3.3:-57330733 | MS.gene55668:CDS |
| TGGTCCCTTGCATCGACTTA+CGG | 0.438370 | 3.3:-57328537 | MS.gene55668:CDS |
| ATGAGGGGATTTGATCTTTG+AGG | 0.439237 | 3.3:+57328715 | None:intergenic |
| GCAGAAACAGGTTACGGTTA+GGG | 0.440923 | 3.3:-57330640 | MS.gene55668:CDS |
| ATGTTTCTGCTGGGTTGTTA+GGG | 0.449011 | 3.3:-57330530 | MS.gene55668:CDS |
| CCATAGCAGTTCCAATAACT+TGG | 0.450305 | 3.3:+57328340 | None:intergenic |
| TTCGGTACTCTTGGTCAACC+TGG | 0.450819 | 3.3:-57328273 | MS.gene55668:CDS |
| GATCGGTGGAATTCTTTCAT+GGG | 0.451529 | 3.3:-57329304 | MS.gene55668:CDS |
| TTTGGATCAGCTGTTGCGTC+CGG | 0.451755 | 3.3:-57327955 | MS.gene55668:CDS |
| ACTTGTGTTGTTGCTGCTAG+TGG | 0.451917 | 3.3:-57330417 | MS.gene55668:CDS |
| CAACTATATTCCTGTTCCTA+TGG | 0.451960 | 3.3:-57328085 | MS.gene55668:CDS |
| GGTGTCATGTGGCCTCTCAT+TGG | 0.456041 | 3.3:-57329282 | MS.gene55668:CDS |
| TATCGAAACATGGCTATACT+AGG | 0.461201 | 3.3:-57328219 | MS.gene55668:CDS |
| AGCAGCTTACATGGTCTTCA+AGG | 0.462139 | 3.3:-57329219 | MS.gene55668:CDS |
| CCAAGCACCAATAGCGAAGA+TGG | 0.462172 | 3.3:+57328506 | None:intergenic |
| ACCAGCTTTCTCAAGCAACT+TGG | 0.467323 | 3.3:+57330485 | None:intergenic |
| CCAAGTTATTGGAACTGCTA+TGG | 0.469421 | 3.3:-57328340 | MS.gene55668:CDS |
| CTTCGTTGAATGTTTCTGCT+GGG | 0.472472 | 3.3:-57330539 | MS.gene55668:CDS |
| CTCAAACAAAGCAGCTTACA+TGG | 0.473967 | 3.3:-57329228 | MS.gene55668:CDS |
| ACCAATATTTCGTTGTTGAT+CGG | 0.478557 | 3.3:-57329321 | MS.gene55668:CDS |
| GCCGTGGCTTTCGACGTCAT+AGG | 0.479696 | 3.3:+57330752 | None:intergenic |
| TACAACGCTTTCGGTACTCT+TGG | 0.482640 | 3.3:-57328282 | MS.gene55668:CDS |
| CTTTAGCTGGTGGAAAATGA+AGG | 0.487926 | 3.3:+57328638 | None:intergenic |
| AAACTTCCCCACATTTGGTC+TGG | 0.492239 | 3.3:-57329647 | MS.gene55668:CDS |
| TGATGTAATACCACTTTAGC+TGG | 0.492701 | 3.3:+57328625 | None:intergenic |
| CAAGTTATTGGAACTGCTAT+GGG | 0.494211 | 3.3:-57328339 | MS.gene55668:CDS |
| GAGAGGAGCATTTGGATCAT+CGG | 0.497596 | 3.3:+57328782 | None:intergenic |
| GCTTGGGCAGGTGCGTCTAA+CGG | 0.499684 | 3.3:-57328489 | MS.gene55668:CDS |
| TTCTTTCATGGGGTGTCATG+TGG | 0.500744 | 3.3:-57329293 | MS.gene55668:CDS |
| TCCATCTCCACATATCAAAC+CGG | 0.501705 | 3.3:+57327936 | None:intergenic |
| ATAGCCATAGCCATAGGAAC+AGG | 0.504745 | 3.3:+57328075 | None:intergenic |
| GATATTGTTTATTTGGCAGA+AGG | 0.507191 | 3.3:-57328001 | MS.gene55668:CDS |
| TTTGCTATTGATATGTGTGT+TGG | 0.507636 | 3.3:-57328030 | MS.gene55668:CDS |
| AATAACAGTATTCTCCTGTC+TGG | 0.507862 | 3.3:+57330443 | None:intergenic |
| CCGTGGCTTTCGACGTCATA+GGG | 0.509154 | 3.3:+57330753 | None:intergenic |
| TATTCCTGTTCCTATGGCTA+TGG | 0.510164 | 3.3:-57328079 | MS.gene55668:CDS |
| CGAAAGCCACGGCATGGCTG+CGG | 0.511258 | 3.3:-57330742 | MS.gene55668:CDS |
| TGTCGTCGAATGAAAGTGTA+GGG | 0.513370 | 3.3:+57328757 | None:intergenic |
| TGAGCTGTTGCGGTACCACT+TGG | 0.516027 | 3.3:+57329811 | None:intergenic |
| TCTAACGGCGGTGTCCTAGC+CGG | 0.520318 | 3.3:-57328474 | MS.gene55668:CDS |
| TATTTGGCAGAAGGTTGATA+GGG | 0.521362 | 3.3:-57327992 | MS.gene55668:CDS |
| GCGAACACCATTAATAATCA+TGG | 0.526943 | 3.3:+57328131 | None:intergenic |
| GAAAATGAAGGGGATGGTAA+TGG | 0.530222 | 3.3:+57328650 | None:intergenic |
| AATAACTTGGCTCACAAACA+TGG | 0.530485 | 3.3:+57328353 | None:intergenic |
| GTTGCGTCCGGTTTGATATG+TGG | 0.530851 | 3.3:-57327943 | MS.gene55668:CDS |
| TTCAGTGGTTCCACTCCGAA+AGG | 0.534003 | 3.3:-57330073 | MS.gene55668:intron |
| AATATTTCGTTGTTGATCGG+TGG | 0.535914 | 3.3:-57329318 | MS.gene55668:CDS |
| CATAGGAACAGGAATATAGT+TGG | 0.536080 | 3.3:+57328086 | None:intergenic |
| TGCCTATGGTTGTGGACTAA+CGG | 0.537350 | 3.3:-57328562 | MS.gene55668:CDS |
| AATGGTGTTCGCGACTATGT+CGG | 0.539051 | 3.3:-57328120 | MS.gene55668:CDS |
| CGCCCTCGTTTATCGAAACA+TGG | 0.542039 | 3.3:-57328229 | MS.gene55668:CDS |
| AATGAAAGTGTAGGGGAGAG+AGG | 0.542386 | 3.3:+57328765 | None:intergenic |
| ACCAAGTTGCTTGAGAAAGC+TGG | 0.544740 | 3.3:-57330486 | MS.gene55668:CDS |
| ACCATTAATAATCATGGCAC+CGG | 0.545307 | 3.3:+57328137 | None:intergenic |
| GTGCAACCGCAGCCATGCCG+TGG | 0.547128 | 3.3:+57330736 | None:intergenic |
| GCATTGCAAAAGGCTAGTGC+AGG | 0.548633 | 3.3:+57328582 | None:intergenic |
| ATAGGCTTCCAGACCAAATG+TGG | 0.549567 | 3.3:+57329639 | None:intergenic |
| TTGATCTTTGAGGAACATCT+CGG | 0.554704 | 3.3:+57328725 | None:intergenic |
| TTCAGTGCTAGTGATGATTG+TGG | 0.556606 | 3.3:-57329676 | MS.gene55668:CDS |
| ATGGTTGTGGACTAACGGAT+TGG | 0.556934 | 3.3:-57328557 | MS.gene55668:CDS |
| ATTTGTGAGTCTCATGTTGT+CGG | 0.557992 | 3.3:-57330613 | MS.gene55668:CDS |
| GATCAAGTATTAAACTGAAG+TGG | 0.558315 | 3.3:+57330367 | None:intergenic |
| ACAACCATAGGCATTGCAAA+AGG | 0.564312 | 3.3:+57328572 | None:intergenic |
| AGGGCGTTAGGTGCAGGGTA+TGG | 0.565245 | 3.3:+57328246 | None:intergenic |
| AACAGTTTCCATACATCAGA+AGG | 0.565961 | 3.3:-57329781 | MS.gene55668:intron |
| ATCGGTGGAATTCTTTCATG+GGG | 0.567187 | 3.3:-57329303 | MS.gene55668:CDS |
| AAACGAGGGCGTTAGGTGCA+GGG | 0.569241 | 3.3:+57328241 | None:intergenic |
| TTGTCGTCGAATGAAAGTGT+AGG | 0.575329 | 3.3:+57328756 | None:intergenic |
| GCAAGAGCAAGAAAAGAGCT+AGG | 0.577753 | 3.3:+57327901 | None:intergenic |
| GGTGCAGGGTATGGTGAACC+AGG | 0.579015 | 3.3:+57328255 | None:intergenic |
| CTGCAATTGCGAACCATGAG+GGG | 0.583286 | 3.3:+57328700 | None:intergenic |
| ATCCGTTAGTCCACAACCAT+AGG | 0.586179 | 3.3:+57328560 | None:intergenic |
| TTTAGCTGGTGGAAAATGAA+GGG | 0.586752 | 3.3:+57328639 | None:intergenic |
| CAAAACAGGTTACATGACAA+TGG | 0.590728 | 3.3:-57328388 | MS.gene55668:CDS |
| AAGAATTTCATGCAAATAGG+TGG | 0.591699 | 3.3:+57327868 | None:intergenic |
| GTCAAGAGCAGCAAATGCTA+AGG | 0.594984 | 3.3:-57327845 | MS.gene55668:CDS |
| AATGGTATAGCCATAGCCAT+AGG | 0.595250 | 3.3:+57328069 | None:intergenic |
| CCCTATGACGTCGAAAGCCA+CGG | 0.598986 | 3.3:-57330753 | MS.gene55668:CDS |
| ATAGCAATGATTCTTGGTGA+TGG | 0.599500 | 3.3:-57328891 | MS.gene55668:CDS |
| AAACATGGCTATACTAGGTG+TGG | 0.601524 | 3.3:-57328214 | MS.gene55668:CDS |
| CCTGCAATTGCGAACCATGA+GGG | 0.604092 | 3.3:+57328699 | None:intergenic |
| TCCGGTTTGATATGTGGAGA+TGG | 0.612716 | 3.3:-57327937 | MS.gene55668:CDS |
| TACGTGGCAGAAACAGGTTA+CGG | 0.614426 | 3.3:-57330646 | MS.gene55668:CDS |
| TCAAAGATCAAATCCCCTCA+TGG | 0.616210 | 3.3:-57328713 | MS.gene55668:CDS |
| TGACGTCGAAAGCCACGGCA+TGG | 0.618397 | 3.3:-57330748 | MS.gene55668:CDS |
| AGTTGCTTGAGAAAGCTGGT+TGG | 0.620575 | 3.3:-57330482 | MS.gene55668:CDS |
| CACATGCTGCTAAACCGGCT+AGG | 0.621749 | 3.3:+57328460 | None:intergenic |
| TGCTTTGTTTGAGATCAGCA+GGG | 0.627385 | 3.3:+57329238 | None:intergenic |
| TGTAATACCACTTTAGCTGG+TGG | 0.629875 | 3.3:+57328628 | None:intergenic |
| ATGGCTATACTAGGTGTGGA+CGG | 0.647638 | 3.3:-57328210 | MS.gene55668:CDS |
| TAGGCTTCCAGACCAAATGT+GGG | 0.650528 | 3.3:+57329640 | None:intergenic |
| TTAGCTGGTGGAAAATGAAG+GGG | 0.653662 | 3.3:+57328640 | None:intergenic |
| CTGGTGGAAAATGAAGGGGA+TGG | 0.654258 | 3.3:+57328644 | None:intergenic |
| TGGGCAGGTGCGTCTAACGG+CGG | 0.655359 | 3.3:-57328486 | MS.gene55668:CDS |
| GTTGATAAGATGAGCTGTTG+CGG | 0.660296 | 3.3:+57329801 | None:intergenic |
| AGTTGTTCATCATTCAACAC+CGG | 0.662303 | 3.3:+57330714 | None:intergenic |
| GCCTGCAATTGCGAACCATG+AGG | 0.668031 | 3.3:+57328698 | None:intergenic |
| TAGTACTGTACCTTTCGGAG+TGG | 0.669012 | 3.3:+57330063 | None:intergenic |
| TGAAGTTGAATCTCACAACT+GGG | 0.670966 | 3.3:-57330569 | MS.gene55668:CDS |
| GTTGAATGATGAACAACTTG+AGG | 0.685365 | 3.3:-57330709 | MS.gene55668:CDS |
| TAGCCATGTTTCGATAAACG+AGG | 0.685399 | 3.3:+57328226 | None:intergenic |
| TTCAAACTGACATATCCAAG+TGG | 0.687798 | 3.3:-57329826 | MS.gene55668:CDS |
| TAGAATAGCCAGAAAACACA+CGG | 0.691145 | 3.3:+57328303 | None:intergenic |
| ACAACTTGAGGAGATCTCTG+TGG | 0.691473 | 3.3:-57330697 | MS.gene55668:CDS |
| CTAGCCGGTTTAGCAGCATG+TGG | 0.697720 | 3.3:-57328459 | MS.gene55668:CDS |
| AGCCATGTTTCGATAAACGA+GGG | 0.699106 | 3.3:+57328227 | None:intergenic |
| CCAGCAGAAACATTCAACGA+AGG | 0.700492 | 3.3:+57330540 | None:intergenic |
| AGGCTTCCAGACCAAATGTG+GGG | 0.704515 | 3.3:+57329641 | None:intergenic |
| GTCGTCGAATGAAAGTGTAG+GGG | 0.705258 | 3.3:+57328758 | None:intergenic |
| GTAACCTGTTTCTGCCACGT+AGG | 0.720663 | 3.3:+57330648 | None:intergenic |
| AAGGAACATCTGTTCCTACG+TGG | 0.720715 | 3.3:-57330662 | MS.gene55668:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTAATGAAAGAATTTAAAA+TGG | - | chr3.3:57329005-57329024 | MS.gene55668:intron | 10.0% |
| !! | AACATCAAATTAAAACTAAA+TGG | + | chr3.3:57328714-57328733 | None:intergenic | 15.0% |
| !! | TATTATTTAATGTACATAAC+AGG | - | chr3.3:57329186-57329205 | MS.gene55668:intron | 15.0% |
| !! | AAAGTATACTTACAAAAAAG+TGG | + | chr3.3:57329481-57329500 | None:intergenic | 20.0% |
| !! | TAAATGTTAGCTAAAAGAAA+AGG | + | chr3.3:57329168-57329187 | None:intergenic | 20.0% |
| !! | TAGGTTTGTATAAACAATTA+TGG | - | chr3.3:57329757-57329776 | MS.gene55668:intron | 20.0% |
| !!! | AACGAAATATTGGTTATATA+TGG | + | chr3.3:57329260-57329279 | None:intergenic | 20.0% |
| !!! | AACTTGTTCTAAAAACTATT+AGG | + | chr3.3:57328269-57328288 | None:intergenic | 20.0% |
| !!! | ACTTGTTCTAAAAACTATTA+GGG | + | chr3.3:57328268-57328287 | None:intergenic | 20.0% |
| !!! | ACTTTTTTGTAAGTATACTT+TGG | - | chr3.3:57329480-57329499 | MS.gene55668:intron | 20.0% |
| !!! | GGGTTAAATTGATTTTATTA+AGG | + | chr3.3:57328574-57328593 | None:intergenic | 20.0% |
| !!! | TGTTTTAAATTGATTGAACA+AGG | + | chr3.3:57328599-57328618 | None:intergenic | 20.0% |
| ! | AGATTTGTCAACAACAAATA+AGG | + | chr3.3:57328335-57328354 | None:intergenic | 25.0% |
| ! | CAACTTAAAACACAGTAAAT+TGG | - | chr3.3:57329540-57329559 | MS.gene55668:intron | 25.0% |
| ! | CAATAGAATACATTATCAAC+CGG | + | chr3.3:57329630-57329649 | None:intergenic | 25.0% |
| ! | GAAGCTTGATATTGTTTATT+TGG | - | chr3.3:57330579-57330598 | MS.gene55668:CDS | 25.0% |
| ! | TAAAACAATTGAACATGACT+TGG | - | chr3.3:57328612-57328631 | MS.gene55668:CDS | 25.0% |
| ! | TTAAATTGATTGAACAAGGA+CGG | + | chr3.3:57328595-57328614 | None:intergenic | 25.0% |
| !!! | TGAATCGATTTTTAAAACGT+GGG | - | chr3.3:57328656-57328675 | MS.gene55668:CDS | 25.0% |
| !!! | TTGAATCGATTTTTAAAACG+TGG | - | chr3.3:57328655-57328674 | MS.gene55668:CDS | 25.0% |
| AAAAACTGCATCATACTTTG+CGG | - | chr3.3:57330416-57330435 | MS.gene55668:CDS | 30.0% | |
| AACAATCATAATCTGCAACA+AGG | + | chr3.3:57328738-57328757 | None:intergenic | 30.0% | |
| AACCTCTATGTTCTCAATTA+TGG | - | chr3.3:57329064-57329083 | MS.gene55668:intron | 30.0% | |
| AAGAATTTCATGCAAATAGG+TGG | + | chr3.3:57330722-57330741 | None:intergenic | 30.0% | |
| AAGTAGCTTCCAATGTAAAA+TGG | + | chr3.3:57330539-57330558 | None:intergenic | 30.0% | |
| ACAAGTACAAAACTGGAATT+TGG | - | chr3.3:57329569-57329588 | MS.gene55668:intron | 30.0% | |
| ACCAATATTTCGTTGTTGAT+CGG | - | chr3.3:57329266-57329285 | MS.gene55668:CDS | 30.0% | |
| GACAAGAATTTCATGCAAAT+AGG | + | chr3.3:57330725-57330744 | None:intergenic | 30.0% | |
| GATATTGTTTATTTGGCAGA+AGG | - | chr3.3:57330586-57330605 | MS.gene55668:CDS | 30.0% | |
| GATCAAGTATTAAACTGAAG+TGG | + | chr3.3:57328223-57328242 | None:intergenic | 30.0% | |
| GATTGAAACAAGTACAAAAC+TGG | - | chr3.3:57329562-57329581 | MS.gene55668:intron | 30.0% | |
| TAAATTGATTGAACAAGGAC+GGG | + | chr3.3:57328594-57328613 | None:intergenic | 30.0% | |
| TTGTATTCTCTCTAAACTAC+AGG | - | chr3.3:57329662-57329681 | MS.gene55668:CDS | 30.0% | |
| ! | ATGGCTATACCATTTTACAT+TGG | - | chr3.3:57330527-57330546 | MS.gene55668:CDS | 30.0% |
| ! | CAAAGTATGATGCAGTTTTT+CGG | + | chr3.3:57330416-57330435 | None:intergenic | 30.0% |
| ! | TCTAAACTACAGGTTTTCAT+AGG | - | chr3.3:57329672-57329691 | MS.gene55668:CDS | 30.0% |
| ! | TTTGATAGTACTGTACCTTT+CGG | + | chr3.3:57328532-57328551 | None:intergenic | 30.0% |
| !! | CGGTTGATAATGTATTCTAT+TGG | - | chr3.3:57329628-57329647 | MS.gene55668:intron | 30.0% |
| !! | CTATTTGTTGTTAGCTTTCT+TGG | - | chr3.3:57328485-57328504 | MS.gene55668:CDS | 30.0% |
| !! | TTTGCTATTGATATGTGTGT+TGG | - | chr3.3:57330557-57330576 | MS.gene55668:CDS | 30.0% |
| !!! | TAGATCTTTTTCAATGTGAC+CGG | - | chr3.3:57329608-57329627 | MS.gene55668:intron | 30.0% |
| AAATTAGCCATCTTCGCTAT+TGG | - | chr3.3:57330074-57330093 | MS.gene55668:intron | 35.0% | |
| AACAGTTTCCATACATCAGA+AGG | - | chr3.3:57328806-57328825 | MS.gene55668:CDS | 35.0% | |
| AATAACAGTATTCTCCTGTC+TGG | + | chr3.3:57328147-57328166 | None:intergenic | 35.0% | |
| AATAACTTGGCTCACAAACA+TGG | + | chr3.3:57330237-57330256 | None:intergenic | 35.0% | |
| AATATTTCGTTGTTGATCGG+TGG | - | chr3.3:57329269-57329288 | MS.gene55668:CDS | 35.0% | |
| ACCAAGACTCTTAACATCAT+TGG | + | chr3.3:57328444-57328463 | None:intergenic | 35.0% | |
| ACCATTAATAATCATGGCAC+CGG | + | chr3.3:57330453-57330472 | None:intergenic | 35.0% | |
| ACCGATCAACAACGAAATAT+TGG | + | chr3.3:57329270-57329289 | None:intergenic | 35.0% | |
| AGTTGTTCATCATTCAACAC+CGG | + | chr3.3:57327876-57327895 | None:intergenic | 35.0% | |
| ATAGCAATGATTCTTGGTGA+TGG | - | chr3.3:57329696-57329715 | MS.gene55668:CDS | 35.0% | |
| ATAGGCATAGCAATGATTCT+TGG | - | chr3.3:57329690-57329709 | MS.gene55668:CDS | 35.0% | |
| ATGAAGTTGAATCTCACAAC+TGG | - | chr3.3:57328017-57328036 | MS.gene55668:CDS | 35.0% | |
| ATGTTTGTGAGCCAAGTTAT+TGG | - | chr3.3:57330236-57330255 | MS.gene55668:intron | 35.0% | |
| ATTTGTGAGTCTCATGTTGT+CGG | - | chr3.3:57327974-57327993 | MS.gene55668:CDS | 35.0% | |
| CAAAACAGGTTACATGACAA+TGG | - | chr3.3:57330199-57330218 | MS.gene55668:intron | 35.0% | |
| CAACTATATTCCTGTTCCTA+TGG | - | chr3.3:57330502-57330521 | MS.gene55668:CDS | 35.0% | |
| CAAGTTATTGGAACTGCTAT+GGG | - | chr3.3:57330248-57330267 | MS.gene55668:intron | 35.0% | |
| CACCATAATTGAGAACATAG+AGG | + | chr3.3:57329069-57329088 | None:intergenic | 35.0% | |
| CATAGGAACAGGAATATAGT+TGG | + | chr3.3:57330504-57330523 | None:intergenic | 35.0% | |
| CCAAATATTGCAAAACAAGC+TGG | - | chr3.3:57328413-57328432 | MS.gene55668:CDS | 35.0% | |
| CTTATGCAAGACTTCAAAAC+AGG | - | chr3.3:57330185-57330204 | MS.gene55668:intron | 35.0% | |
| GAACATAGAGGTTTCAGTTT+CGG | + | chr3.3:57329057-57329076 | None:intergenic | 35.0% | |
| GATGTTAAGAGTCTTGGTTT+AGG | - | chr3.3:57328446-57328465 | MS.gene55668:CDS | 35.0% | |
| GCGAACACCATTAATAATCA+TGG | + | chr3.3:57330459-57330478 | None:intergenic | 35.0% | |
| GTGATGGTCTATACAACTTT+GGG | - | chr3.3:57329712-57329731 | MS.gene55668:CDS | 35.0% | |
| GTTGAATGATGAACAACTTG+AGG | - | chr3.3:57327878-57327897 | MS.gene55668:CDS | 35.0% | |
| TACTTGCTTCTTTGCTAGTT+TGG | + | chr3.3:57328834-57328853 | None:intergenic | 35.0% | |
| TAGAATAGCCAGAAAACACA+CGG | + | chr3.3:57330287-57330306 | None:intergenic | 35.0% | |
| TATCGAAACATGGCTATACT+AGG | - | chr3.3:57330368-57330387 | MS.gene55668:CDS | 35.0% | |
| TGAAGTTGAATCTCACAACT+GGG | - | chr3.3:57328018-57328037 | MS.gene55668:CDS | 35.0% | |
| TGATATGTGGAGATGGAATT+TGG | - | chr3.3:57330657-57330676 | MS.gene55668:CDS | 35.0% | |
| TGATGTAATACCACTTTAGC+TGG | + | chr3.3:57329965-57329984 | None:intergenic | 35.0% | |
| TTAAGAGTCTTGGTTTAGGA+TGG | - | chr3.3:57328450-57328469 | MS.gene55668:CDS | 35.0% | |
| TTCAAACTGACATATCCAAG+TGG | - | chr3.3:57328761-57328780 | MS.gene55668:CDS | 35.0% | |
| TTTAGCTGGTGGAAAATGAA+GGG | + | chr3.3:57329951-57329970 | None:intergenic | 35.0% | |
| ! | ATTTTTCTGCAACCTATGTG+GGG | - | chr3.3:57329219-57329238 | MS.gene55668:CDS | 35.0% |
| ! | GATTTTTCTGCAACCTATGT+GGG | - | chr3.3:57329218-57329237 | MS.gene55668:CDS | 35.0% |
| ! | GGTTTTTCTTTGTGAAGACA+TGG | - | chr3.3:57328078-57328097 | MS.gene55668:CDS | 35.0% |
| ! | TAATCAACCTTTTACCAGAC+AGG | - | chr3.3:57328130-57328149 | MS.gene55668:CDS | 35.0% |
| ! | TACAACTTTGGGAAAGTTCT+TGG | - | chr3.3:57329723-57329742 | MS.gene55668:CDS | 35.0% |
| ! | TGATTTTTCTGCAACCTATG+TGG | - | chr3.3:57329217-57329236 | MS.gene55668:CDS | 35.0% |
| ! | TTATTTGGCAGAAGGTTGAT+AGG | - | chr3.3:57330594-57330613 | MS.gene55668:CDS | 35.0% |
| ! | TTGATCTTTGAGGAACATCT+CGG | + | chr3.3:57329865-57329884 | None:intergenic | 35.0% |
| !! | AAGAAGCAAGTAAAAGCACT+TGG | - | chr3.3:57328842-57328861 | MS.gene55668:CDS | 35.0% |
| !! | GCTAAGGTTGATAAGTTCTT+AGG | - | chr3.3:57330758-57330777 | MS.gene55668:CDS | 35.0% |
| !! | TATTTGGCAGAAGGTTGATA+GGG | - | chr3.3:57330595-57330614 | MS.gene55668:CDS | 35.0% |
| !! | TTGGTGCTAAAAAAGGAGAT+TGG | - | chr3.3:57329324-57329343 | MS.gene55668:CDS | 35.0% |
| !!! | AGTCACGTACTTGTTTTGAT+AGG | + | chr3.3:57328969-57328988 | None:intergenic | 35.0% |
| !!! | CCAGCTTGTTTTGCAATATT+TGG | + | chr3.3:57328416-57328435 | None:intergenic | 35.0% |
| !!! | CGATTTTTAAAACGTGGGAT+GGG | - | chr3.3:57328661-57328680 | MS.gene55668:CDS | 35.0% |
| !!! | CTTCTCCTTTAGCTTTTTGT+GGG | - | chr3.3:57328871-57328890 | MS.gene55668:CDS | 35.0% |
| !!! | TCGATTTTTAAAACGTGGGA+TGG | - | chr3.3:57328660-57328679 | MS.gene55668:CDS | 35.0% |
| !!! | TCTTCTCCTTTAGCTTTTTG+TGG | - | chr3.3:57328870-57328889 | MS.gene55668:CDS | 35.0% |
| !!! | TTCTCCTTTAGCTTTTTGTG+GGG | - | chr3.3:57328872-57328891 | MS.gene55668:CDS | 35.0% |
| AAACATGGCTATACTAGGTG+TGG | - | chr3.3:57330373-57330392 | MS.gene55668:CDS | 40.0% | |
| AATGGTATAGCCATAGCCAT+AGG | + | chr3.3:57330521-57330540 | None:intergenic | 40.0% | |
| AGCCATGTTTCGATAAACGA+GGG | + | chr3.3:57330363-57330382 | None:intergenic | 40.0% | |
| AGGAGATCTCTGTGGAAAAA+GGG | - | chr3.3:57327898-57327917 | MS.gene55668:CDS | 40.0% | |
| ATAGAGGTTTCAGTTTCGGT+CGG | + | chr3.3:57329053-57329072 | None:intergenic | 40.0% | |
| ATCGGTGGAATTCTTTCATG+GGG | - | chr3.3:57329284-57329303 | MS.gene55668:CDS | 40.0% | |
| ATGAGGGGATTTGATCTTTG+AGG | + | chr3.3:57329875-57329894 | None:intergenic | 40.0% | |
| CCAAGTTATTGGAACTGCTA+TGG | - | chr3.3:57330247-57330266 | MS.gene55668:intron | 40.0% | |
| CCATAGCAGTTCCAATAACT+TGG | + | chr3.3:57330250-57330269 | None:intergenic | 40.0% | |
| CTCAAACAAAGCAGCTTACA+TGG | - | chr3.3:57329359-57329378 | MS.gene55668:CDS | 40.0% | |
| CTTTAGCTGGTGGAAAATGA+AGG | + | chr3.3:57329952-57329971 | None:intergenic | 40.0% | |
| GAAAATGAAGGGGATGGTAA+TGG | + | chr3.3:57329940-57329959 | None:intergenic | 40.0% | |
| GAAACCCCACAAAAAGCTAA+AGG | + | chr3.3:57328879-57328898 | None:intergenic | 40.0% | |
| GATCGGTGGAATTCTTTCAT+GGG | - | chr3.3:57329283-57329302 | MS.gene55668:CDS | 40.0% | |
| GCCAATGATGTTAAGAGTCT+TGG | - | chr3.3:57328440-57328459 | MS.gene55668:CDS | 40.0% | |
| GTATTCTCCTGTCTGGTAAA+AGG | + | chr3.3:57328140-57328159 | None:intergenic | 40.0% | |
| GTTCTTGGCACAACTCTTAT+AGG | - | chr3.3:57329738-57329757 | MS.gene55668:intron | 40.0% | |
| TAGCCATGTTTCGATAAACG+AGG | + | chr3.3:57330364-57330383 | None:intergenic | 40.0% | |
| TATTCCTGTTCCTATGGCTA+TGG | - | chr3.3:57330508-57330527 | MS.gene55668:CDS | 40.0% | |
| TCAAAGATCAAATCCCCTCA+TGG | - | chr3.3:57329874-57329893 | MS.gene55668:intron | 40.0% | |
| TCCATCTCCACATATCAAAC+CGG | + | chr3.3:57330654-57330673 | None:intergenic | 40.0% | |
| TCTGTGGAAAAAGGGTTTGA+AGG | - | chr3.3:57327906-57327925 | MS.gene55668:CDS | 40.0% | |
| TGATCGGTGGAATTCTTTCA+TGG | - | chr3.3:57329282-57329301 | MS.gene55668:CDS | 40.0% | |
| TGGCTATTCTACAACGCTTT+CGG | - | chr3.3:57330296-57330315 | MS.gene55668:intron | 40.0% | |
| TGGCTCACAAACATGGATTT+CGG | + | chr3.3:57330230-57330249 | None:intergenic | 40.0% | |
| TGTAATACCACTTTAGCTGG+TGG | + | chr3.3:57329962-57329981 | None:intergenic | 40.0% | |
| TTAGCTGGTGGAAAATGAAG+GGG | + | chr3.3:57329950-57329969 | None:intergenic | 40.0% | |
| TTCAGTGCTAGTGATGATTG+TGG | - | chr3.3:57328911-57328930 | MS.gene55668:intron | 40.0% | |
| TTTGCAAACTTCCCCACATT+TGG | - | chr3.3:57328935-57328954 | MS.gene55668:intron | 40.0% | |
| ! | AATGTTTCTGCTGGGTTGTT+AGG | - | chr3.3:57328056-57328075 | MS.gene55668:CDS | 40.0% |
| ! | ACAACCATAGGCATTGCAAA+AGG | + | chr3.3:57330018-57330037 | None:intergenic | 40.0% |
| ! | ATGTTTCTGCTGGGTTGTTA+GGG | - | chr3.3:57328057-57328076 | MS.gene55668:CDS | 40.0% |
| ! | ATTTTCCGTAAGTCGATGCA+AGG | + | chr3.3:57330058-57330077 | None:intergenic | 40.0% |
| ! | CACTAGCACTGAAAAACCAT+TGG | + | chr3.3:57328904-57328923 | None:intergenic | 40.0% |
| ! | CTTCGTTGAATGTTTCTGCT+GGG | - | chr3.3:57328048-57328067 | MS.gene55668:CDS | 40.0% |
| ! | CTTTCTTGGTCTCTTTTCAG+TGG | - | chr3.3:57328499-57328518 | MS.gene55668:CDS | 40.0% |
| ! | GGTGATGGTCTATACAACTT+TGG | - | chr3.3:57329711-57329730 | MS.gene55668:CDS | 40.0% |
| ! | GTTGATAAGATGAGCTGTTG+CGG | + | chr3.3:57328789-57328808 | None:intergenic | 40.0% |
| ! | TCATTTTCCACCAGCTAAAG+TGG | - | chr3.3:57329952-57329971 | MS.gene55668:intron | 40.0% |
| ! | TGTCGTCGAATGAAAGTGTA+GGG | + | chr3.3:57329833-57329852 | None:intergenic | 40.0% |
| ! | TTATATCGCCGTGTGTTTTC+TGG | - | chr3.3:57330276-57330295 | MS.gene55668:intron | 40.0% |
| ! | TTGTCGTCGAATGAAAGTGT+AGG | + | chr3.3:57329834-57329853 | None:intergenic | 40.0% |
| ! | TTTTCCGTAAGTCGATGCAA+GGG | + | chr3.3:57330057-57330076 | None:intergenic | 40.0% |
| ! | TTTTGCAATGCCTATGGTTG+TGG | - | chr3.3:57330017-57330036 | MS.gene55668:intron | 40.0% |
| ! | TTTTGTGGGGTTTCTTCCAA+TGG | - | chr3.3:57328885-57328904 | MS.gene55668:CDS | 40.0% |
| ! | TTTTTCTGCAACCTATGTGG+GGG | - | chr3.3:57329220-57329239 | MS.gene55668:CDS | 40.0% |
| !! | CCTCTCATTGGTGCTAAAAA+AGG | - | chr3.3:57329317-57329336 | MS.gene55668:CDS | 40.0% |
| !! | TGCTTTGTTTGAGATCAGCA+GGG | + | chr3.3:57329352-57329371 | None:intergenic | 40.0% |
| !!! | CCTTTTTTAGCACCAATGAG+AGG | + | chr3.3:57329320-57329339 | None:intergenic | 40.0% |
| AAACTTCCCCACATTTGGTC+TGG | - | chr3.3:57328940-57328959 | MS.gene55668:intron | 45.0% | |
| AAGGAACATCTGTTCCTACG+TGG | - | chr3.3:57327925-57327944 | MS.gene55668:CDS | 45.0% | |
| AATGGTGTTCGCGACTATGT+CGG | - | chr3.3:57330467-57330486 | MS.gene55668:CDS | 45.0% | |
| ACAACTTGAGGAGATCTCTG+TGG | - | chr3.3:57327890-57327909 | MS.gene55668:CDS | 45.0% | |
| ACCAAGTTGCTTGAGAAAGC+TGG | - | chr3.3:57328101-57328120 | MS.gene55668:CDS | 45.0% | |
| ACCAGCTTTCTCAAGCAACT+TGG | + | chr3.3:57328105-57328124 | None:intergenic | 45.0% | |
| AGCAGCTTACATGGTCTTCA+AGG | - | chr3.3:57329368-57329387 | MS.gene55668:CDS | 45.0% | |
| AGGGTTAAGGCTGATGCATT+TGG | - | chr3.3:57330614-57330633 | MS.gene55668:CDS | 45.0% | |
| AGTTGCTTGAGAAAGCTGGT+TGG | - | chr3.3:57328105-57328124 | MS.gene55668:CDS | 45.0% | |
| ATAGCCATAGCCATAGGAAC+AGG | + | chr3.3:57330515-57330534 | None:intergenic | 45.0% | |
| ATAGGCTTCCAGACCAAATG+TGG | + | chr3.3:57328951-57328970 | None:intergenic | 45.0% | |
| ATCCGTTAGTCCACAACCAT+AGG | + | chr3.3:57330030-57330049 | None:intergenic | 45.0% | |
| ATGGCTATACTAGGTGTGGA+CGG | - | chr3.3:57330377-57330396 | MS.gene55668:CDS | 45.0% | |
| ATTTGCTTGCTTGTGCAGGT+GGG | - | chr3.3:57328363-57328382 | MS.gene55668:CDS | 45.0% | |
| CCAGCAGAAACATTCAACGA+AGG | + | chr3.3:57328050-57328069 | None:intergenic | 45.0% | |
| GAGGAGATCTCTGTGGAAAA+AGG | - | chr3.3:57327897-57327916 | MS.gene55668:CDS | 45.0% | |
| GCAAGAGCAAGAAAAGAGCT+AGG | + | chr3.3:57330689-57330708 | None:intergenic | 45.0% | |
| GCAGAAACAGGTTACGGTTA+GGG | - | chr3.3:57327947-57327966 | MS.gene55668:CDS | 45.0% | |
| GTCAAGAGCAGCAAATGCTA+AGG | - | chr3.3:57330742-57330761 | MS.gene55668:CDS | 45.0% | |
| GTTTGGCACCTTCTGATGTA+TGG | + | chr3.3:57328817-57328836 | None:intergenic | 45.0% | |
| TACAACGCTTTCGGTACTCT+TGG | - | chr3.3:57330305-57330324 | MS.gene55668:intron | 45.0% | |
| TACGTGGCAGAAACAGGTTA+CGG | - | chr3.3:57327941-57327960 | MS.gene55668:CDS | 45.0% | |
| TAGGCTTCCAGACCAAATGT+GGG | + | chr3.3:57328950-57328969 | None:intergenic | 45.0% | |
| TAGTACTGTACCTTTCGGAG+TGG | + | chr3.3:57328527-57328546 | None:intergenic | 45.0% | |
| ! | AATGAAAGTGTAGGGGAGAG+AGG | + | chr3.3:57329825-57329844 | None:intergenic | 45.0% |
| ! | ACTTGTGTTGTTGCTGCTAG+TGG | - | chr3.3:57328170-57328189 | MS.gene55668:CDS | 45.0% |
| ! | AGCTCTTTTCTTGCTCTTGC+TGG | - | chr3.3:57330689-57330708 | MS.gene55668:CDS | 45.0% |
| ! | ATGGTTGTGGACTAACGGAT+TGG | - | chr3.3:57330030-57330049 | MS.gene55668:intron | 45.0% |
| ! | CATCTTCGCTATTGGTGCTT+GGG | - | chr3.3:57330082-57330101 | MS.gene55668:intron | 45.0% |
| ! | CCTTCGTTGAATGTTTCTGC+TGG | - | chr3.3:57328047-57328066 | MS.gene55668:CDS | 45.0% |
| ! | GGGTTTGGTAGCTACTTGTT+TGG | - | chr3.3:57328383-57328402 | MS.gene55668:CDS | 45.0% |
| ! | GTCGTCGAATGAAAGTGTAG+GGG | + | chr3.3:57329832-57329851 | None:intergenic | 45.0% |
| ! | TCCGGTTTGATATGTGGAGA+TGG | - | chr3.3:57330650-57330669 | MS.gene55668:CDS | 45.0% |
| ! | TGCCTATGGTTGTGGACTAA+CGG | - | chr3.3:57330025-57330044 | MS.gene55668:intron | 45.0% |
| ! | TTCTTTCATGGGGTGTCATG+TGG | - | chr3.3:57329294-57329313 | MS.gene55668:CDS | 45.0% |
| !! | CTAGCCTTTTGCAATGCCTA+TGG | - | chr3.3:57330011-57330030 | MS.gene55668:intron | 45.0% |
| !! | CTGCTTTGTTTGAGATCAGC+AGG | + | chr3.3:57329353-57329372 | None:intergenic | 45.0% |
| !! | CTTGATTTGCTTGCTTGTGC+AGG | - | chr3.3:57328359-57328378 | MS.gene55668:CDS | 45.0% |
| !! | GAGAGGAGCATTTGGATCAT+CGG | + | chr3.3:57329808-57329827 | None:intergenic | 45.0% |
| !! | GCAGAAGGTTGATAGGGTTA+AGG | - | chr3.3:57330601-57330620 | MS.gene55668:CDS | 45.0% |
| !! | GCCGGTGCCATGATTATTAA+TGG | - | chr3.3:57330449-57330468 | MS.gene55668:CDS | 45.0% |
| !! | TTTCGATAAACGAGGGCGTT+AGG | + | chr3.3:57330356-57330375 | None:intergenic | 45.0% |
| !! | TTCATTAATTAATAAAATAA+AGG | + | chr3.3:57328994-57329013 | None:intergenic | 5.0% |
| !!! | TTTTTATTTATTTAAATTGT+AGG | - | chr3.3:57329423-57329442 | MS.gene55668:intron | 5.0% |
| AGGCTTCCAGACCAAATGTG+GGG | + | chr3.3:57328949-57328968 | None:intergenic | 50.0% | |
| CCAAGCACCAATAGCGAAGA+TGG | + | chr3.3:57330084-57330103 | None:intergenic | 50.0% | |
| CCTGCAATTGCGAACCATGA+GGG | + | chr3.3:57329891-57329910 | None:intergenic | 50.0% | |
| CGCCCTCGTTTATCGAAACA+TGG | - | chr3.3:57330358-57330377 | MS.gene55668:intron | 50.0% | |
| CTGCAATTGCGAACCATGAG+GGG | + | chr3.3:57329890-57329909 | None:intergenic | 50.0% | |
| CTGGTGGAAAATGAAGGGGA+TGG | + | chr3.3:57329946-57329965 | None:intergenic | 50.0% | |
| GACACCACATGCTGCTAAAC+CGG | + | chr3.3:57330135-57330154 | None:intergenic | 50.0% | |
| GCATTGCAAAAGGCTAGTGC+AGG | + | chr3.3:57330008-57330027 | None:intergenic | 50.0% | |
| GGCAGAAACAGGTTACGGTT+AGG | - | chr3.3:57327946-57327965 | MS.gene55668:CDS | 50.0% | |
| TATCATCCCAACCCCCACAT+AGG | + | chr3.3:57329234-57329253 | None:intergenic | 50.0% | |
| TGTTCCTACGTGGCAGAAAC+AGG | - | chr3.3:57327935-57327954 | MS.gene55668:CDS | 50.0% | |
| TTCAGTGGTTCCACTCCGAA+AGG | - | chr3.3:57328514-57328533 | MS.gene55668:CDS | 50.0% | |
| TTCGGTACTCTTGGTCAACC+TGG | - | chr3.3:57330314-57330333 | MS.gene55668:intron | 50.0% | |
| TTTGGATCAGCTGTTGCGTC+CGG | - | chr3.3:57330632-57330651 | MS.gene55668:CDS | 50.0% | |
| ! | CCATCTTCGCTATTGGTGCT+TGG | - | chr3.3:57330081-57330100 | MS.gene55668:intron | 50.0% |
| ! | GATTTGCTTGCTTGTGCAGG+TGG | - | chr3.3:57328362-57328381 | MS.gene55668:CDS | 50.0% |
| ! | GTTGCGTCCGGTTTGATATG+TGG | - | chr3.3:57330644-57330663 | MS.gene55668:CDS | 50.0% |
| !! | GTAACCTGTTTCTGCCACGT+AGG | + | chr3.3:57327942-57327961 | None:intergenic | 50.0% |
| !! | TGGTCCCTTGCATCGACTTA+CGG | - | chr3.3:57330050-57330069 | MS.gene55668:intron | 50.0% |
| CACATGCTGCTAAACCGGCT+AGG | + | chr3.3:57330130-57330149 | None:intergenic | 55.0% | |
| CCCTATGACGTCGAAAGCCA+CGG | - | chr3.3:57327834-57327853 | MS.gene55668:CDS | 55.0% | |
| CCCTCATGGTTCGCAATTGC+AGG | - | chr3.3:57329888-57329907 | MS.gene55668:intron | 55.0% | |
| CCGTGGCTTTCGACGTCATA+GGG | + | chr3.3:57327837-57327856 | None:intergenic | 55.0% | |
| CTGCAACCTATGTGGGGGTT+GGG | - | chr3.3:57329225-57329244 | MS.gene55668:CDS | 55.0% | |
| GCCTGCAATTGCGAACCATG+AGG | + | chr3.3:57329892-57329911 | None:intergenic | 55.0% | |
| TCTGCAACCTATGTGGGGGT+TGG | - | chr3.3:57329224-57329243 | MS.gene55668:CDS | 55.0% | |
| TGAGCTGTTGCGGTACCACT+TGG | + | chr3.3:57328779-57328798 | None:intergenic | 55.0% | |
| ! | CTAGCCGGTTTAGCAGCATG+TGG | - | chr3.3:57330128-57330147 | MS.gene55668:intron | 55.0% |
| ! | CTTGCTTGTGCAGGTGGGTT+TGG | - | chr3.3:57328368-57328387 | MS.gene55668:CDS | 55.0% |
| ! | CTTTGCGGCGTGTTTTTCGC+CGG | - | chr3.3:57330431-57330450 | MS.gene55668:CDS | 55.0% |
| ! | GGTGTCATGTGGCCTCTCAT+TGG | - | chr3.3:57329305-57329324 | MS.gene55668:CDS | 55.0% |
| ! | TTCGCTATTGGTGCTTGGGC+AGG | - | chr3.3:57330086-57330105 | MS.gene55668:intron | 55.0% |
| !! | AAACGAGGGCGTTAGGTGCA+GGG | + | chr3.3:57330349-57330368 | None:intergenic | 55.0% |
| !! | GTAGGGGAGAGAGGAGCATT+TGG | + | chr3.3:57329816-57329835 | None:intergenic | 55.0% |
| !! | TAAACGAGGGCGTTAGGTGC+AGG | + | chr3.3:57330350-57330369 | None:intergenic | 55.0% |
| GCCGTGGCTTTCGACGTCAT+AGG | + | chr3.3:57327838-57327857 | None:intergenic | 60.0% | |
| GCTTGGGCAGGTGCGTCTAA+CGG | - | chr3.3:57330098-57330117 | MS.gene55668:intron | 60.0% | |
| GGTGCAGGGTATGGTGAACC+AGG | + | chr3.3:57330335-57330354 | None:intergenic | 60.0% | |
| TCTAACGGCGGTGTCCTAGC+CGG | - | chr3.3:57330113-57330132 | MS.gene55668:intron | 60.0% | |
| TGACGTCGAAAGCCACGGCA+TGG | - | chr3.3:57327839-57327858 | MS.gene55668:CDS | 60.0% | |
| ! | AGGGCGTTAGGTGCAGGGTA+TGG | + | chr3.3:57330344-57330363 | None:intergenic | 60.0% |
| CGAAAGCCACGGCATGGCTG+CGG | - | chr3.3:57327845-57327864 | MS.gene55668:CDS | 65.0% | |
| TGGGCAGGTGCGTCTAACGG+CGG | - | chr3.3:57330101-57330120 | MS.gene55668:intron | 65.0% | |
| CGGCATGGCTGCGGTTGCAC+CGG | - | chr3.3:57327854-57327873 | MS.gene55668:CDS | 70.0% | |
| GTGCAACCGCAGCCATGCCG+TGG | + | chr3.3:57327854-57327873 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 57327822 | 57330787 | 57327822 | ID=MS.gene55668 |
| chr3.3 | mRNA | 57327822 | 57330787 | 57327822 | ID=MS.gene55668.t1;Parent=MS.gene55668 |
| chr3.3 | exon | 57330364 | 57330787 | 57330364 | ID=MS.gene55668.t1.exon1;Parent=MS.gene55668.t1 |
| chr3.3 | CDS | 57330364 | 57330787 | 57330364 | ID=cds.MS.gene55668.t1;Parent=MS.gene55668.t1 |
| chr3.3 | exon | 57330074 | 57330090 | 57330074 | ID=MS.gene55668.t1.exon2;Parent=MS.gene55668.t1 |
| chr3.3 | CDS | 57330074 | 57330090 | 57330074 | ID=cds.MS.gene55668.t1;Parent=MS.gene55668.t1 |
| chr3.3 | exon | 57329782 | 57329863 | 57329782 | ID=MS.gene55668.t1.exon3;Parent=MS.gene55668.t1 |
| chr3.3 | CDS | 57329782 | 57329863 | 57329782 | ID=cds.MS.gene55668.t1;Parent=MS.gene55668.t1 |
| chr3.3 | exon | 57329631 | 57329751 | 57329631 | ID=MS.gene55668.t1.exon4;Parent=MS.gene55668.t1 |
| chr3.3 | CDS | 57329631 | 57329751 | 57329631 | ID=cds.MS.gene55668.t1;Parent=MS.gene55668.t1 |
| chr3.3 | exon | 57329212 | 57329401 | 57329212 | ID=MS.gene55668.t1.exon5;Parent=MS.gene55668.t1 |
| chr3.3 | CDS | 57329212 | 57329401 | 57329212 | ID=cds.MS.gene55668.t1;Parent=MS.gene55668.t1 |
| chr3.3 | exon | 57327822 | 57328925 | 57327822 | ID=MS.gene55668.t1.exon6;Parent=MS.gene55668.t1 |
| chr3.3 | CDS | 57327822 | 57328925 | 57327822 | ID=cds.MS.gene55668.t1;Parent=MS.gene55668.t1 |
| Gene Sequence |
| Protein sequence |
