Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene55676.t1 | XP_013460530.1 | 98 | 252 | 5 | 0 | 1 | 252 | 1 | 252 | 1.60E-120 | 442.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene55676.t1 | Q8LD98 | 58.4 | 255 | 99 | 3 | 2 | 252 | 1 | 252 | 1.7e-62 | 240.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene55676.t1 | I3T2S7 | 98.0 | 252 | 5 | 0 | 1 | 252 | 1 | 252 | 1.2e-120 | 442.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050612 | MS.gene55676 | -0.806267 | 8.94E-50 | -1.69E-46 |
| MS.gene051127 | MS.gene55676 | 0.804616 | 1.98E-49 | -1.69E-46 |
| MS.gene051651 | MS.gene55676 | 0.803301 | 3.72E-49 | -1.69E-46 |
| MS.gene053561 | MS.gene55676 | 0.805755 | 1.15E-49 | -1.69E-46 |
| MS.gene055942 | MS.gene55676 | 0.818651 | 1.75E-52 | -1.69E-46 |
| MS.gene056504 | MS.gene55676 | -0.80085 | 1.19E-48 | -1.69E-46 |
| MS.gene058111 | MS.gene55676 | 0.818212 | 2.21E-52 | -1.69E-46 |
| MS.gene058171 | MS.gene55676 | 0.834986 | 2.18E-56 | -1.69E-46 |
| MS.gene058173 | MS.gene55676 | 0.828756 | 7.53E-55 | -1.69E-46 |
| MS.gene058175 | MS.gene55676 | 0.838127 | 3.46E-57 | -1.69E-46 |
| MS.gene059865 | MS.gene55676 | -0.807044 | 6.13E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene55676.t1 | MTR_3g063310 | 97.619 | 252 | 6 | 0 | 1 | 252 | 1 | 252 | 0.0 | 509 |
| MS.gene55676.t1 | MTR_5g076170 | 61.597 | 263 | 89 | 3 | 2 | 252 | 1 | 263 | 1.52e-97 | 286 |
| MS.gene55676.t1 | MTR_1g077560 | 48.819 | 254 | 123 | 5 | 2 | 252 | 1 | 250 | 2.13e-68 | 211 |
| MS.gene55676.t1 | MTR_5g087760 | 35.648 | 216 | 132 | 4 | 40 | 252 | 43 | 254 | 5.85e-36 | 128 |
| MS.gene55676.t1 | MTR_3g078800 | 38.251 | 183 | 106 | 3 | 72 | 250 | 73 | 252 | 1.05e-33 | 123 |
| MS.gene55676.t1 | MTR_2g012550 | 33.824 | 204 | 120 | 6 | 55 | 252 | 70 | 264 | 1.49e-28 | 109 |
| MS.gene55676.t1 | MTR_2g011350 | 33.113 | 151 | 94 | 3 | 80 | 227 | 35 | 181 | 5.96e-23 | 93.2 |
| MS.gene55676.t1 | MTR_3g104460 | 30.846 | 201 | 126 | 6 | 61 | 252 | 57 | 253 | 4.38e-22 | 92.0 |
| MS.gene55676.t1 | MTR_2g100060 | 30.726 | 179 | 115 | 5 | 81 | 252 | 77 | 253 | 1.39e-21 | 90.9 |
| MS.gene55676.t1 | MTR_3g078820 | 30.570 | 193 | 122 | 4 | 46 | 233 | 4 | 189 | 2.16e-21 | 89.4 |
| MS.gene55676.t1 | MTR_3g074150 | 26.471 | 238 | 160 | 5 | 15 | 247 | 15 | 242 | 3.73e-20 | 87.0 |
| MS.gene55676.t1 | MTR_6g071410 | 34.559 | 136 | 80 | 4 | 62 | 194 | 2 | 131 | 4.79e-19 | 83.2 |
| MS.gene55676.t1 | MTR_6g070890 | 34.559 | 136 | 80 | 4 | 62 | 194 | 2 | 131 | 4.79e-19 | 83.2 |
| MS.gene55676.t1 | MTR_1g057400 | 29.412 | 187 | 123 | 5 | 51 | 230 | 3 | 187 | 2.85e-18 | 80.9 |
| MS.gene55676.t1 | MTR_2g086790 | 27.320 | 194 | 128 | 2 | 70 | 250 | 20 | 213 | 3.19e-18 | 80.9 |
| MS.gene55676.t1 | MTR_6g471090 | 38.462 | 130 | 69 | 6 | 66 | 194 | 10 | 129 | 4.85e-18 | 80.1 |
| MS.gene55676.t1 | MTR_1g057270 | 31.818 | 176 | 104 | 5 | 87 | 250 | 75 | 246 | 2.85e-17 | 79.0 |
| MS.gene55676.t1 | MTR_6g070900 | 31.613 | 155 | 98 | 6 | 62 | 211 | 2 | 153 | 3.45e-17 | 78.2 |
| MS.gene55676.t1 | MTR_6g071400 | 31.613 | 155 | 98 | 6 | 62 | 211 | 2 | 153 | 3.45e-17 | 78.2 |
| MS.gene55676.t1 | MTR_4g119428 | 31.892 | 185 | 104 | 5 | 59 | 230 | 41 | 216 | 5.04e-17 | 78.2 |
| MS.gene55676.t1 | MTR_3g078810 | 33.333 | 126 | 73 | 3 | 120 | 239 | 14 | 134 | 2.27e-16 | 74.3 |
| MS.gene55676.t1 | MTR_7g106050 | 28.497 | 193 | 131 | 4 | 53 | 244 | 9 | 195 | 2.65e-16 | 75.5 |
| MS.gene55676.t1 | MTR_8g090320 | 26.344 | 186 | 109 | 5 | 61 | 239 | 83 | 247 | 7.27e-16 | 75.1 |
| MS.gene55676.t1 | MTR_4g051880 | 32.544 | 169 | 103 | 4 | 92 | 250 | 44 | 211 | 2.38e-15 | 73.2 |
| MS.gene55676.t1 | MTR_7g106000 | 26.941 | 219 | 139 | 8 | 37 | 246 | 16 | 222 | 8.20e-15 | 71.6 |
| MS.gene55676.t1 | MTR_2g090225 | 38.095 | 147 | 78 | 5 | 93 | 233 | 62 | 201 | 9.46e-15 | 71.6 |
| MS.gene55676.t1 | MTR_1g057420 | 27.273 | 165 | 116 | 4 | 88 | 250 | 39 | 201 | 2.99e-12 | 64.3 |
| MS.gene55676.t1 | MTR_6g471080 | 32.895 | 152 | 86 | 6 | 66 | 211 | 7 | 148 | 7.45e-12 | 63.2 |
| MS.gene55676.t1 | MTR_7g105870 | 33.129 | 163 | 106 | 3 | 70 | 230 | 44 | 205 | 1.15e-11 | 63.2 |
| MS.gene55676.t1 | MTR_8g016370 | 23.346 | 257 | 152 | 8 | 2 | 252 | 1 | 218 | 1.38e-11 | 62.8 |
| MS.gene55676.t1 | MTR_3g092790 | 30.882 | 136 | 91 | 3 | 92 | 226 | 49 | 182 | 4.07e-11 | 61.2 |
| MS.gene55676.t1 | MTR_7g106120 | 27.778 | 126 | 84 | 3 | 53 | 172 | 2 | 126 | 6.83e-11 | 60.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene55676.t1 | AT1G65690 | 58.039 | 255 | 100 | 3 | 2 | 252 | 1 | 252 | 1.44e-96 | 283 |
| MS.gene55676.t1 | AT5G36970 | 51.793 | 251 | 118 | 1 | 2 | 252 | 1 | 248 | 2.06e-85 | 254 |
| MS.gene55676.t1 | AT1G54540 | 43.651 | 252 | 128 | 4 | 2 | 252 | 1 | 239 | 2.15e-58 | 186 |
| MS.gene55676.t1 | AT2G27080 | 34.615 | 182 | 113 | 3 | 59 | 239 | 72 | 248 | 2.68e-34 | 124 |
| MS.gene55676.t1 | AT2G27080 | 34.615 | 182 | 113 | 3 | 59 | 239 | 72 | 248 | 2.68e-34 | 124 |
| MS.gene55676.t1 | AT3G11650 | 29.167 | 216 | 133 | 6 | 36 | 237 | 14 | 223 | 1.20e-23 | 95.9 |
| MS.gene55676.t1 | AT2G35980 | 35.233 | 193 | 110 | 6 | 40 | 227 | 18 | 200 | 2.11e-23 | 95.1 |
| MS.gene55676.t1 | AT5G21130 | 25.641 | 195 | 145 | 0 | 56 | 250 | 86 | 280 | 3.62e-22 | 92.8 |
| MS.gene55676.t1 | AT5G06320 | 30.769 | 208 | 124 | 7 | 36 | 230 | 10 | 210 | 1.70e-21 | 90.1 |
| MS.gene55676.t1 | AT3G52470 | 26.804 | 194 | 135 | 5 | 59 | 250 | 12 | 200 | 9.08e-17 | 76.6 |
| MS.gene55676.t1 | AT2G35460 | 25.000 | 184 | 133 | 4 | 71 | 250 | 56 | 238 | 4.00e-16 | 75.5 |
| MS.gene55676.t1 | AT3G44220 | 29.268 | 164 | 116 | 0 | 71 | 234 | 22 | 185 | 4.58e-16 | 74.7 |
| MS.gene55676.t1 | AT4G09590 | 29.944 | 177 | 120 | 4 | 76 | 250 | 29 | 203 | 2.01e-15 | 73.2 |
| MS.gene55676.t1 | AT5G22870 | 26.012 | 173 | 127 | 1 | 65 | 237 | 25 | 196 | 2.76e-15 | 72.8 |
| MS.gene55676.t1 | AT2G22180 | 25.463 | 216 | 138 | 5 | 40 | 251 | 94 | 290 | 5.05e-15 | 73.6 |
| MS.gene55676.t1 | AT1G17620 | 29.707 | 239 | 143 | 10 | 2 | 226 | 1 | 228 | 5.62e-15 | 72.8 |
| MS.gene55676.t1 | AT2G35970 | 29.944 | 177 | 120 | 4 | 76 | 250 | 29 | 203 | 7.97e-15 | 71.6 |
| MS.gene55676.t1 | AT3G11660 | 25.275 | 182 | 131 | 4 | 70 | 248 | 20 | 199 | 1.57e-13 | 67.8 |
| MS.gene55676.t1 | AT2G35960 | 25.444 | 169 | 124 | 2 | 83 | 250 | 35 | 202 | 7.43e-13 | 66.2 |
| MS.gene55676.t1 | AT5G53730 | 27.879 | 165 | 110 | 3 | 74 | 236 | 38 | 195 | 8.85e-13 | 65.9 |
| MS.gene55676.t1 | AT5G22200 | 30.216 | 139 | 97 | 0 | 88 | 226 | 43 | 181 | 2.51e-12 | 64.7 |
| MS.gene55676.t1 | AT2G46300 | 30.208 | 192 | 125 | 5 | 44 | 227 | 37 | 227 | 2.18e-11 | 62.8 |
Find 59 sgRNAs with CRISPR-Local
Find 64 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAGTCTGTCTACGGAGTATT+TGG | 0.188778 | 3.3:-57167106 | None:intergenic |
| TATATTCCAATCTTCTTGTT+AGG | 0.211306 | 3.3:-57167204 | None:intergenic |
| CTTTATACCAAGCACTTATA+TGG | 0.275071 | 3.3:-57167242 | None:intergenic |
| TCCTGTGTTTGACCTGTTAA+AGG | 0.282421 | 3.3:-57167336 | None:intergenic |
| TAATATACCACTTAATATTA+AGG | 0.282779 | 3.3:+57167407 | MS.gene55676:CDS |
| GTCTCTGCCGAAATTCTATC+AGG | 0.301530 | 3.3:+57167284 | MS.gene55676:CDS |
| ACGGAGTATTTGGGAAGTTT+TGG | 0.306221 | 3.3:-57167096 | None:intergenic |
| TCGTGTTAGGTGCAGCCTTC+AGG | 0.318841 | 3.3:+57167485 | MS.gene55676:CDS |
| CGATGACCCTGATAGAATTT+CGG | 0.348072 | 3.3:-57167291 | None:intergenic |
| AATTCACCCTGCTAGTGATT+TGG | 0.348837 | 3.3:+57166840 | MS.gene55676:CDS |
| GTGCTTAATCTACCTTTAAC+AGG | 0.355672 | 3.3:+57167324 | MS.gene55676:CDS |
| TTAGAGTCAAGTTTCGTGTT+AGG | 0.366756 | 3.3:+57167472 | MS.gene55676:CDS |
| TTGCAATTGGCATCACTGTT+GGG | 0.370285 | 3.3:+57167052 | MS.gene55676:CDS |
| CTGATTCTTATAATTGCAAT+TGG | 0.380687 | 3.3:+57167039 | MS.gene55676:CDS |
| TGCAGTTACTGTTACATTGA+AGG | 0.386255 | 3.3:-57167175 | None:intergenic |
| ATATTCCAATCTTCTTGTTA+GGG | 0.397601 | 3.3:-57167203 | None:intergenic |
| AATTATAAGAATCAGCAATA+TGG | 0.406684 | 3.3:-57167031 | None:intergenic |
| AAACAAAGGAACTGTAGGTT+TGG | 0.417723 | 3.3:-57166872 | None:intergenic |
| TGATTAACCTTAATATTAAG+TGG | 0.432715 | 3.3:-57167414 | None:intergenic |
| AGAAACCCTAACAAGAAGAT+TGG | 0.436387 | 3.3:+57167198 | MS.gene55676:CDS |
| AGTGCTTGGTATAAAGAAAC+AGG | 0.436753 | 3.3:+57167249 | MS.gene55676:CDS |
| CTCACTGGAAAGTGGCGTTT+CGG | 0.437034 | 3.3:-57166946 | None:intergenic |
| CAGATAGTAAATGTAAGTTC+AGG | 0.455434 | 3.3:+57167544 | MS.gene55676:CDS |
| GGTGGATGAGTGTGCCTCAC+TGG | 0.457753 | 3.3:-57166961 | None:intergenic |
| GGAAAGTGGCGTTTCGGAAG+AGG | 0.477952 | 3.3:-57166940 | None:intergenic |
| AGTCTGTCTACGGAGTATTT+GGG | 0.485802 | 3.3:-57167105 | None:intergenic |
| ATTGCAATTGGCATCACTGT+TGG | 0.490412 | 3.3:+57167051 | MS.gene55676:CDS |
| CGAGGAAACAAAGGAACTGT+AGG | 0.498817 | 3.3:-57166877 | None:intergenic |
| TCACCCTGCTAGTGATTTGG+AGG | 0.499157 | 3.3:+57166843 | MS.gene55676:CDS |
| AGAAAAGAAGTTGCTGCTGC+AGG | 0.502944 | 3.3:+57166989 | MS.gene55676:CDS |
| CAGCAGCAGCTACAAGAAGC+AGG | 0.503374 | 3.3:+57167384 | MS.gene55676:CDS |
| GGTCAAACACAGGATGCAAC+TGG | 0.504890 | 3.3:+57167345 | MS.gene55676:CDS |
| TGTGCCTCCAAATCACTAGC+AGG | 0.513508 | 3.3:-57166847 | None:intergenic |
| ATTGGAATATACTATGTAAG+TGG | 0.516967 | 3.3:+57167216 | MS.gene55676:CDS |
| CAGAATGTGAGGGTTAAACT+TGG | 0.517481 | 3.3:+57167435 | MS.gene55676:CDS |
| AGCCTTCAGGTGGATAGTCT+TGG | 0.518857 | 3.3:+57167498 | MS.gene55676:CDS |
| ATGTGAAGGACTGCGTCGAT+CGG | 0.529155 | 3.3:-57166914 | None:intergenic |
| GTAAATGTAAGTTCAGGCTC+AGG | 0.540224 | 3.3:+57167550 | MS.gene55676:CDS |
| AAGAAACAGGACTGTGTGAA+GGG | 0.543431 | 3.3:+57167262 | MS.gene55676:CDS |
| TGCAATTGGCATCACTGTTG+GGG | 0.544430 | 3.3:+57167053 | MS.gene55676:CDS |
| CGAAATTCTATCAGGGTCAT+CGG | 0.547495 | 3.3:+57167292 | MS.gene55676:CDS |
| TGTTATTCTGAGTCTGTCTA+CGG | 0.555736 | 3.3:-57167115 | None:intergenic |
| TTAAGGTTAATCAGAATGTG+AGG | 0.560781 | 3.3:+57167424 | MS.gene55676:CDS |
| GTGGAAGCCATATAAGTGCT+TGG | 0.564620 | 3.3:+57167235 | MS.gene55676:CDS |
| TGTTAGGTGCAGCCTTCAGG+TGG | 0.567547 | 3.3:+57167488 | MS.gene55676:CDS |
| TTCGGAAGAGGTGGATGTGA+AGG | 0.571122 | 3.3:-57166928 | None:intergenic |
| AAAGAAACAGGACTGTGTGA+AGG | 0.583033 | 3.3:+57167261 | MS.gene55676:CDS |
| GAAGTGTTTCGAGGAAACAA+AGG | 0.599067 | 3.3:-57166886 | None:intergenic |
| AAGAATCAGCAATATGGTGA+AGG | 0.607184 | 3.3:-57167025 | None:intergenic |
| AAGTGGCGTTTCGGAAGAGG+TGG | 0.610030 | 3.3:-57166937 | None:intergenic |
| GAGTGTGCCTCACTGGAAAG+TGG | 0.615492 | 3.3:-57166954 | None:intergenic |
| TAAGGTTAATCAGAATGTGA+GGG | 0.620913 | 3.3:+57167425 | MS.gene55676:CDS |
| AACAAAGAGACTGTTGTCGT+CGG | 0.621599 | 3.3:-57167151 | None:intergenic |
| TGTTAAAGGTAGATTAAGCA+CGG | 0.622717 | 3.3:-57167322 | None:intergenic |
| CACCAAGACTATCCACCTGA+AGG | 0.627283 | 3.3:-57167500 | None:intergenic |
| ACCTTTAACAGGTCAAACAC+AGG | 0.638297 | 3.3:+57167335 | MS.gene55676:CDS |
| TCTCTGCCGAAATTCTATCA+GGG | 0.641999 | 3.3:+57167285 | MS.gene55676:CDS |
| GTGCCTCCAAATCACTAGCA+GGG | 0.648239 | 3.3:-57166846 | None:intergenic |
| CGAAACGCCACTTTCCAGTG+AGG | 0.695288 | 3.3:+57166947 | MS.gene55676:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAATATACCACTTAATATTA+AGG | + | chr3.3:57167407-57167426 | MS.gene55676:CDS | 15.0% |
| !! | AATTATAAGAATCAGCAATA+TGG | - | chr3.3:57167034-57167053 | None:intergenic | 20.0% |
| !! | TGATTAACCTTAATATTAAG+TGG | - | chr3.3:57167417-57167436 | None:intergenic | 20.0% |
| ! | ATATTCCAATCTTCTTGTTA+GGG | - | chr3.3:57167206-57167225 | None:intergenic | 25.0% |
| ! | ATTGGAATATACTATGTAAG+TGG | + | chr3.3:57167216-57167235 | MS.gene55676:CDS | 25.0% |
| ! | CTGATTCTTATAATTGCAAT+TGG | + | chr3.3:57167039-57167058 | MS.gene55676:CDS | 25.0% |
| ! | TATATTCCAATCTTCTTGTT+AGG | - | chr3.3:57167207-57167226 | None:intergenic | 25.0% |
| CAGATAGTAAATGTAAGTTC+AGG | + | chr3.3:57167544-57167563 | MS.gene55676:CDS | 30.0% | |
| CTTTATACCAAGCACTTATA+TGG | - | chr3.3:57167245-57167264 | None:intergenic | 30.0% | |
| TAAGGTTAATCAGAATGTGA+GGG | + | chr3.3:57167425-57167444 | MS.gene55676:CDS | 30.0% | |
| TGTTAAAGGTAGATTAAGCA+CGG | - | chr3.3:57167325-57167344 | None:intergenic | 30.0% | |
| TTAAGGTTAATCAGAATGTG+AGG | + | chr3.3:57167424-57167443 | MS.gene55676:CDS | 30.0% | |
| AAACAAAGGAACTGTAGGTT+TGG | - | chr3.3:57166875-57166894 | None:intergenic | 35.0% | |
| AAGAATCAGCAATATGGTGA+AGG | - | chr3.3:57167028-57167047 | None:intergenic | 35.0% | |
| AGAAACCCTAACAAGAAGAT+TGG | + | chr3.3:57167198-57167217 | MS.gene55676:CDS | 35.0% | |
| AGTGCTTGGTATAAAGAAAC+AGG | + | chr3.3:57167249-57167268 | MS.gene55676:CDS | 35.0% | |
| GTGCTTAATCTACCTTTAAC+AGG | + | chr3.3:57167324-57167343 | MS.gene55676:CDS | 35.0% | |
| TGCAGTTACTGTTACATTGA+AGG | - | chr3.3:57167178-57167197 | None:intergenic | 35.0% | |
| TGTTATTCTGAGTCTGTCTA+CGG | - | chr3.3:57167118-57167137 | None:intergenic | 35.0% | |
| TTAGAGTCAAGTTTCGTGTT+AGG | + | chr3.3:57167472-57167491 | MS.gene55676:CDS | 35.0% | |
| ! | CAACTTCTTTTCTTCTTTGG+TGG | - | chr3.3:57166982-57167001 | None:intergenic | 35.0% |
| ! | CAGCAACTTCTTTTCTTCTT+TGG | - | chr3.3:57166985-57167004 | None:intergenic | 35.0% |
| AAAGAAACAGGACTGTGTGA+AGG | + | chr3.3:57167261-57167280 | MS.gene55676:CDS | 40.0% | |
| AACAAAGAGACTGTTGTCGT+CGG | - | chr3.3:57167154-57167173 | None:intergenic | 40.0% | |
| AAGAAACAGGACTGTGTGAA+GGG | + | chr3.3:57167262-57167281 | MS.gene55676:CDS | 40.0% | |
| AATTCACCCTGCTAGTGATT+TGG | + | chr3.3:57166840-57166859 | MS.gene55676:CDS | 40.0% | |
| ACCTTTAACAGGTCAAACAC+AGG | + | chr3.3:57167335-57167354 | MS.gene55676:CDS | 40.0% | |
| ATTGCAATTGGCATCACTGT+TGG | + | chr3.3:57167051-57167070 | MS.gene55676:CDS | 40.0% | |
| CAGAATGTGAGGGTTAAACT+TGG | + | chr3.3:57167435-57167454 | MS.gene55676:CDS | 40.0% | |
| CGAAATTCTATCAGGGTCAT+CGG | + | chr3.3:57167292-57167311 | MS.gene55676:CDS | 40.0% | |
| CGATGACCCTGATAGAATTT+CGG | - | chr3.3:57167294-57167313 | None:intergenic | 40.0% | |
| GTAAATGTAAGTTCAGGCTC+AGG | + | chr3.3:57167550-57167569 | MS.gene55676:CDS | 40.0% | |
| TCCTGTGTTTGACCTGTTAA+AGG | - | chr3.3:57167339-57167358 | None:intergenic | 40.0% | |
| TCTCTGCCGAAATTCTATCA+GGG | + | chr3.3:57167285-57167304 | MS.gene55676:CDS | 40.0% | |
| TTGCAATTGGCATCACTGTT+GGG | + | chr3.3:57167052-57167071 | MS.gene55676:CDS | 40.0% | |
| ! | AGTCTGTCTACGGAGTATTT+GGG | - | chr3.3:57167108-57167127 | None:intergenic | 40.0% |
| ! | GAAGTGTTTCGAGGAAACAA+AGG | - | chr3.3:57166889-57166908 | None:intergenic | 40.0% |
| !! | ACGGAGTATTTGGGAAGTTT+TGG | - | chr3.3:57167099-57167118 | None:intergenic | 40.0% |
| !! | GAAGTTTTGGCCTAAAAGCA+AGG | - | chr3.3:57167086-57167105 | None:intergenic | 40.0% |
| !!! | TCGGATTTTGAAGTGTTTCG+AGG | - | chr3.3:57166898-57166917 | None:intergenic | 40.0% |
| AGAAAAGAAGTTGCTGCTGC+AGG | + | chr3.3:57166989-57167008 | MS.gene55676:CDS | 45.0% | |
| CGAGGAAACAAAGGAACTGT+AGG | - | chr3.3:57166880-57166899 | None:intergenic | 45.0% | |
| GTCTCTGCCGAAATTCTATC+AGG | + | chr3.3:57167284-57167303 | MS.gene55676:CDS | 45.0% | |
| GTGGAAGCCATATAAGTGCT+TGG | + | chr3.3:57167235-57167254 | MS.gene55676:CDS | 45.0% | |
| TGCAATTGGCATCACTGTTG+GGG | + | chr3.3:57167053-57167072 | MS.gene55676:CDS | 45.0% | |
| ! | GAGTCTGTCTACGGAGTATT+TGG | - | chr3.3:57167109-57167128 | None:intergenic | 45.0% |
| AGCCTTCAGGTGGATAGTCT+TGG | + | chr3.3:57167498-57167517 | MS.gene55676:CDS | 50.0% | |
| CACCAAGACTATCCACCTGA+AGG | - | chr3.3:57167503-57167522 | None:intergenic | 50.0% | |
| CTCACTGGAAAGTGGCGTTT+CGG | - | chr3.3:57166949-57166968 | None:intergenic | 50.0% | |
| GGTCAAACACAGGATGCAAC+TGG | + | chr3.3:57167345-57167364 | MS.gene55676:CDS | 50.0% | |
| GTGCCTCCAAATCACTAGCA+GGG | - | chr3.3:57166849-57166868 | None:intergenic | 50.0% | |
| TGTGCCTCCAAATCACTAGC+AGG | - | chr3.3:57166850-57166869 | None:intergenic | 50.0% | |
| TTCGGAAGAGGTGGATGTGA+AGG | - | chr3.3:57166931-57166950 | None:intergenic | 50.0% | |
| ! | ATGTGAAGGACTGCGTCGAT+CGG | - | chr3.3:57166917-57166936 | None:intergenic | 50.0% |
| ! | TCACCCTGCTAGTGATTTGG+AGG | + | chr3.3:57166843-57166862 | MS.gene55676:CDS | 50.0% |
| !! | GGGCACTCTACCTTGCTTTT+AGG | + | chr3.3:57167073-57167092 | MS.gene55676:CDS | 50.0% |
| AAGTGGCGTTTCGGAAGAGG+TGG | - | chr3.3:57166940-57166959 | None:intergenic | 55.0% | |
| CAGCAGCAGCTACAAGAAGC+AGG | + | chr3.3:57167384-57167403 | MS.gene55676:CDS | 55.0% | |
| GAGTGTGCCTCACTGGAAAG+TGG | - | chr3.3:57166957-57166976 | None:intergenic | 55.0% | |
| GGAAAGTGGCGTTTCGGAAG+AGG | - | chr3.3:57166943-57166962 | None:intergenic | 55.0% | |
| TCGTGTTAGGTGCAGCCTTC+AGG | + | chr3.3:57167485-57167504 | MS.gene55676:CDS | 55.0% | |
| TGTTAGGTGCAGCCTTCAGG+TGG | + | chr3.3:57167488-57167507 | MS.gene55676:CDS | 55.0% | |
| ! | CGAAACGCCACTTTCCAGTG+AGG | + | chr3.3:57166947-57166966 | MS.gene55676:CDS | 55.0% |
| GGTGGATGAGTGTGCCTCAC+TGG | - | chr3.3:57166964-57166983 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 57166820 | 57167578 | 57166820 | ID=MS.gene55676 |
| chr3.3 | mRNA | 57166820 | 57167578 | 57166820 | ID=MS.gene55676.t1;Parent=MS.gene55676 |
| chr3.3 | exon | 57166820 | 57167578 | 57166820 | ID=MS.gene55676.t1.exon1;Parent=MS.gene55676.t1 |
| chr3.3 | CDS | 57166820 | 57167578 | 57166820 | ID=cds.MS.gene55676.t1;Parent=MS.gene55676.t1 |
| Gene Sequence |
| Protein sequence |
