Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene55779.t1 | KEH21195.1 | 72.6 | 689 | 46 | 4 | 1 | 689 | 1 | 546 | 6.10E-186 | 661 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene55779.t1 | A0A072U5S1 | 72.6 | 689 | 46 | 4 | 1 | 689 | 1 | 546 | 4.4e-186 | 661.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene55779 | MS.gene071322 | PPI |
| MS.gene002442 | MS.gene55779 | PPI |
| MS.gene43392 | MS.gene55779 | PPI |
| MS.gene91529 | MS.gene55779 | PPI |
| MS.gene50540 | MS.gene55779 | PPI |
| MS.gene020278 | MS.gene55779 | PPI |
| MS.gene55779 | MS.gene44133 | PPI |
| MS.gene55779 | MS.gene056067 | PPI |
| MS.gene005262 | MS.gene55779 | PPI |
| MS.gene55779 | MS.gene01425 | PPI |
| MS.gene55779 | MS.gene60920 | PPI |
| MS.gene55779 | MS.gene92243 | PPI |
| MS.gene55779 | MS.gene065848 | PPI |
| MS.gene55779 | MS.gene49380 | PPI |
| MS.gene55779 | MS.gene44072 | PPI |
| MS.gene55779 | MS.gene036192 | PPI |
| MS.gene55779 | MS.gene97766 | PPI |
| MS.gene55779 | MS.gene047578 | PPI |
| MS.gene96757 | MS.gene55779 | PPI |
| MS.gene018136 | MS.gene55779 | PPI |
| MS.gene55779 | MS.gene90400 | PPI |
| MS.gene005205 | MS.gene55779 | PPI |
| MS.gene55779 | MS.gene40883 | PPI |
| MS.gene55779 | MS.gene01091 | PPI |
| MS.gene55779 | MS.gene054884 | PPI |
| MS.gene54368 | MS.gene55779 | PPI |
| MS.gene39948 | MS.gene55779 | PPI |
| MS.gene55779 | MS.gene91179 | PPI |
| MS.gene056066 | MS.gene55779 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene55779.t1 | MTR_8g099280 | 63.425 | 689 | 109 | 9 | 1 | 689 | 1 | 546 | 0.0 | 719 |
| MS.gene55779.t1 | MTR_8g099275 | 65.367 | 436 | 119 | 1 | 286 | 689 | 788 | 1223 | 1.03e-163 | 503 |
| MS.gene55779.t1 | MTR_8g099275 | 71.429 | 63 | 18 | 0 | 159 | 221 | 21 | 83 | 9.53e-21 | 98.2 |
| MS.gene55779.t1 | MTR_8g099275 | 65.714 | 70 | 11 | 3 | 6 | 62 | 18 | 87 | 5.49e-14 | 76.3 |
| MS.gene55779.t1 | MTR_8g099290 | 48.125 | 640 | 206 | 12 | 132 | 687 | 60 | 657 | 1.64e-144 | 436 |
| MS.gene55779.t1 | MTR_8g099265 | 29.722 | 360 | 203 | 5 | 336 | 683 | 476 | 797 | 5.33e-30 | 127 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene55779.t1 | AT5G41790 | 31.378 | 392 | 204 | 8 | 310 | 689 | 1244 | 1582 | 3.61e-33 | 137 |
| MS.gene55779.t1 | AT5G41790 | 31.378 | 392 | 204 | 8 | 310 | 689 | 1244 | 1582 | 3.61e-33 | 137 |
| MS.gene55779.t1 | AT5G41780 | 26.170 | 470 | 272 | 17 | 230 | 680 | 118 | 531 | 1.02e-11 | 68.6 |
| MS.gene55779.t1 | AT5G41780 | 26.170 | 470 | 272 | 17 | 230 | 680 | 118 | 531 | 1.02e-11 | 68.6 |
| MS.gene55779.t1 | AT5G41780 | 26.170 | 470 | 272 | 17 | 230 | 680 | 118 | 531 | 1.02e-11 | 68.6 |
| MS.gene55779.t1 | AT5G41780 | 26.170 | 470 | 272 | 17 | 230 | 680 | 118 | 531 | 1.02e-11 | 68.6 |
Find 127 sgRNAs with CRISPR-Local
Find 165 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATATTGTGCATAAAGAAAT+TGG | 0.208825 | 4.3:+4815879 | None:intergenic |
| ACCACTTGCTGAATTTATTA+AGG | 0.209893 | 4.3:-4815918 | MS.gene55779:CDS |
| GTTCTTTGTCCCGGATATTT+TGG | 0.212959 | 4.3:+4815105 | None:intergenic |
| GAAGGAACCACTTGCTAAAT+TGG | 0.223145 | 4.3:-4816370 | MS.gene55779:CDS |
| AGATCAGATGGTTGCTGATT+TGG | 0.224715 | 4.3:-4815234 | MS.gene55779:CDS |
| GATAGCAGGTGAGTTGTTTA+TGG | 0.227997 | 4.3:+4816337 | None:intergenic |
| TGGAGGAGCTGCAGGGTAAA+AGG | 0.272472 | 4.3:-4814755 | MS.gene55779:CDS |
| CTCGACATTCTCAACCAAAA+AGG | 0.335300 | 4.3:+4815157 | None:intergenic |
| CCATTTCAAGTTCTGAAACT+TGG | 0.340446 | 4.3:+4816274 | None:intergenic |
| TGAAGAGCTAGAGAAGTTGA+TGG | 0.348600 | 4.3:-4814619 | MS.gene55779:CDS |
| GGGAGAGAAAATAGATCATT+TGG | 0.349193 | 4.3:-4815573 | MS.gene55779:CDS |
| TATCTGTTATCAATCTTATC+AGG | 0.349896 | 4.3:-4816227 | MS.gene55779:CDS |
| TGATAAAGAAAAGCAGCTTC+AGG | 0.360145 | 4.3:-4816887 | MS.gene55779:CDS |
| GTTGAGAATGTCGAGAATCT+TGG | 0.368175 | 4.3:-4815149 | MS.gene55779:CDS |
| TTGAGAATGTCGAGAATCTT+GGG | 0.369897 | 4.3:-4815148 | MS.gene55779:CDS |
| CCAAGTTTCAGAACTTGAAA+TGG | 0.380164 | 4.3:-4816274 | MS.gene55779:CDS |
| AAATTGGAGACAAAGTAAAA+AGG | 0.384142 | 4.3:-4816746 | MS.gene55779:CDS |
| CCATTTGTTGGAGGAGCTGC+AGG | 0.387223 | 4.3:-4814763 | MS.gene55779:CDS |
| TGGTTCAACAGTGTGATATC+TGG | 0.388765 | 4.3:-4814930 | MS.gene55779:CDS |
| CCAGAAAGCAAAAGAAGAAA+TGG | 0.390780 | 4.3:-4815510 | MS.gene55779:CDS |
| CCGGGGTGCCATCCTCATTA+AGG | 0.392615 | 4.3:+4815960 | None:intergenic |
| AGAACAATTGCTAAGTGAAA+AGG | 0.394269 | 4.3:-4815087 | MS.gene55779:CDS |
| ATCAGAGAGCACTTCAAATC+AGG | 0.394359 | 4.3:-4815025 | MS.gene55779:CDS |
| AAATTGAAGACAAAGTAAAA+AGG | 0.397832 | 4.3:-4816009 | MS.gene55779:CDS |
| CCCTCTTCAAAATTTCTGCC+GGG | 0.399740 | 4.3:+4815942 | None:intergenic |
| CAGGAATGAGATAAGTAAAC+TGG | 0.412763 | 4.3:-4815615 | MS.gene55779:CDS |
| GAAGAGTTTCGTCAAGGCAT+TGG | 0.413187 | 4.3:-4815263 | MS.gene55779:CDS |
| AGGAAAAGAGGGAGGCCATC+AGG | 0.414307 | 4.3:-4814563 | MS.gene55779:CDS |
| AGAGAGGAAGATGGAAATAA+TGG | 0.417316 | 4.3:-4815288 | MS.gene55779:CDS |
| TCCCTCTTCAAAATTTCTGC+CGG | 0.426517 | 4.3:+4815941 | None:intergenic |
| AAACATCTCACATGAGCTTC+AGG | 0.428923 | 4.3:-4814847 | MS.gene55779:CDS |
| GCTTGTCAAACCAAAATATC+CGG | 0.434857 | 4.3:-4815115 | MS.gene55779:CDS |
| AAGAGTTTCGTCAAGGCATT+GGG | 0.436849 | 4.3:-4815262 | MS.gene55779:CDS |
| CAGCTTCAGGGAGCTAAAAC+AGG | 0.439095 | 4.3:-4816874 | MS.gene55779:intron |
| GCTAGAGGCAAAGGCAAGAA+AGG | 0.439791 | 4.3:-4814697 | MS.gene55779:CDS |
| GATGGGTTCACACTGCTCTC+TGG | 0.439915 | 4.3:+4814463 | None:intergenic |
| TTGTACCTTCTTTAGCTCCC+TGG | 0.440010 | 4.3:+4816160 | None:intergenic |
| AGAGGAGGGTACGTTGAACT+TGG | 0.440246 | 4.3:-4814589 | MS.gene55779:CDS |
| TATGTTGCTGAATTATCTCC+AGG | 0.440631 | 4.3:+4815711 | None:intergenic |
| GATGACAAACTTGGCGAAGA+TGG | 0.444149 | 4.3:-4816705 | MS.gene55779:CDS |
| GAAGTTGATGGAAGAGAAAG+AGG | 0.449076 | 4.3:-4814607 | MS.gene55779:CDS |
| AAATTCACGCATACATGATA+AGG | 0.453812 | 4.3:+4815745 | None:intergenic |
| GGCACAGGAGAATTTGTTGA+TGG | 0.454836 | 4.3:-4815594 | MS.gene55779:CDS |
| CTTATTAAAGATGACAAACT+TGG | 0.459122 | 4.3:-4816714 | MS.gene55779:CDS |
| GAACAATTGCTAAGTGAAAA+GGG | 0.463801 | 4.3:-4815086 | MS.gene55779:CDS |
| TTAGCAATTGTTCTTTGTCC+CGG | 0.465387 | 4.3:+4815096 | None:intergenic |
| CACAATATGAAGAGCAAGCA+AGG | 0.466447 | 4.3:-4815865 | MS.gene55779:CDS |
| TTCACACTGCTCTCTGGCCC+CGG | 0.474554 | 4.3:+4814469 | None:intergenic |
| TGCTATCATGATCATCTTGA+GGG | 0.474969 | 4.3:-4816642 | MS.gene55779:CDS |
| TGATAAAGAAAAGCAGCTCC+AGG | 0.475782 | 4.3:-4816178 | MS.gene55779:CDS |
| ACCACTTGCTAAATTGGTTG+AGG | 0.479278 | 4.3:-4816364 | MS.gene55779:CDS |
| CAATTCAGCTAGTTCTGCTC+TGG | 0.482325 | 4.3:+4816680 | None:intergenic |
| GTTTGCAGATTGATTATCAC+AGG | 0.484671 | 4.3:-4814533 | MS.gene55779:CDS |
| CATCTAGAGGGGCACAACTT+AGG | 0.484981 | 4.3:-4816306 | MS.gene55779:CDS |
| CCTGCAGCTCCTCCAACAAA+TGG | 0.491576 | 4.3:+4814763 | None:intergenic |
| GGAGGAGCTGCAGGGTAAAA+GGG | 0.492835 | 4.3:-4814754 | MS.gene55779:CDS |
| TGAAGTTGCAGAGAGGAAGA+TGG | 0.500394 | 4.3:-4815297 | MS.gene55779:CDS |
| GATAAAGAAAAGCAGCTTCA+GGG | 0.501153 | 4.3:-4816886 | MS.gene55779:CDS |
| CTAGAGGCAAAGGCAAGAAA+GGG | 0.502275 | 4.3:-4814696 | MS.gene55779:CDS |
| TCCTCAACCAATTTAGCAAG+TGG | 0.510155 | 4.3:+4816363 | None:intergenic |
| CAGCTCCAGGGAGCTAAAGA+AGG | 0.520930 | 4.3:-4816165 | MS.gene55779:intron |
| TAATGATCACTACCTTAATG+AGG | 0.530750 | 4.3:-4815972 | MS.gene55779:CDS |
| TTCATTGTCAACCACTGCGA+GGG | 0.532211 | 4.3:+4815448 | None:intergenic |
| ATTCATATCAAAGACTCGCC+GGG | 0.532708 | 4.3:-4814487 | MS.gene55779:CDS |
| AAGGGAAGAGGAATTAACTC+TGG | 0.534555 | 4.3:-4814736 | MS.gene55779:CDS |
| TGAGATAAGTAAACTGGCAC+AGG | 0.534623 | 4.3:-4815609 | MS.gene55779:CDS |
| TGAATTTAATAAGTCCCTCC+TGG | 0.534643 | 4.3:-4815729 | MS.gene55779:CDS |
| TGAACTTGGGAGAGGAAAAG+AGG | 0.536617 | 4.3:-4814575 | MS.gene55779:CDS |
| TTGATGGAAGAGAAAGAGGA+GGG | 0.537216 | 4.3:-4814603 | MS.gene55779:CDS |
| CCTTCTTCAAAAGTTCTGCT+CGG | 0.538720 | 4.3:+4816388 | None:intergenic |
| GGAGTCCAAAGAAAGAGAAA+AGG | 0.538947 | 4.3:-4816253 | MS.gene55779:CDS |
| CATCTTGAGGGAGCTAAACC+AGG | 0.540845 | 4.3:-4816630 | MS.gene55779:intron |
| CCTCTTCAAAATTTCTGCCG+GGG | 0.542678 | 4.3:+4815943 | None:intergenic |
| GGTTGAAAAGCTAGAGGCAA+AGG | 0.542679 | 4.3:-4814706 | MS.gene55779:CDS |
| TAGATGATCATGAAGATAGC+AGG | 0.544022 | 4.3:+4816323 | None:intergenic |
| TCCTTAATAAATTCAGCAAG+TGG | 0.545699 | 4.3:+4815917 | None:intergenic |
| TCAATAAAATGAACAAGGAA+AGG | 0.549546 | 4.3:-4814809 | MS.gene55779:CDS |
| AATTCATATCAAAGACTCGC+CGG | 0.556514 | 4.3:-4814488 | MS.gene55779:CDS |
| GTTGATGGAAGAGAAAGAGG+AGG | 0.560634 | 4.3:-4814604 | MS.gene55779:CDS |
| CTGCTATCATGATCATCTTG+AGG | 0.563301 | 4.3:-4816643 | MS.gene55779:CDS |
| AAAAGCAAATAAATGATCAC+AGG | 0.569158 | 4.3:-4815634 | MS.gene55779:CDS |
| AGGGAAGAGGAATTAACTCT+GGG | 0.570351 | 4.3:-4814735 | MS.gene55779:CDS |
| CATTGGGTCAAAAGATCAGA+TGG | 0.574829 | 4.3:-4815246 | MS.gene55779:CDS |
| CTGCAAACAAAGCTGCCTGA+TGG | 0.585782 | 4.3:+4814548 | None:intergenic |
| GGAGCGCAATGACTATCTAA+AGG | 0.585903 | 4.3:-4814511 | MS.gene55779:CDS |
| GCTGCAGGGTAAAAGGGAAG+AGG | 0.586054 | 4.3:-4814748 | MS.gene55779:CDS |
| ATGAAAAGCTTCATTGTCAG+CGG | 0.588252 | 4.3:+4814977 | None:intergenic |
| TATCTTCATGATCATCTAGA+GGG | 0.588339 | 4.3:-4816318 | MS.gene55779:CDS |
| AAAGGGAGAGAGCTTTAGAA+AGG | 0.589388 | 4.3:-4815069 | MS.gene55779:CDS |
| GCACAGGAGAATTTGTTGAT+GGG | 0.590821 | 4.3:-4815593 | MS.gene55779:CDS |
| CTTGTCAAACCAAAATATCC+GGG | 0.594134 | 4.3:-4815114 | MS.gene55779:CDS |
| TGCTACTGCAGAAGCAACAA+TGG | 0.597727 | 4.3:-4815000 | MS.gene55779:CDS |
| GAACTTGGGAGAGGAAAAGA+GGG | 0.600303 | 4.3:-4814574 | MS.gene55779:CDS |
| TATGACAAACTTGACGAGGA+TGG | 0.601073 | 4.3:-4816414 | MS.gene55779:CDS |
| GGGTACGTTGAACTTGGGAG+AGG | 0.605872 | 4.3:-4814583 | MS.gene55779:CDS |
| CTATCTTCATGATCATCTAG+AGG | 0.607415 | 4.3:-4816319 | MS.gene55779:CDS |
| ATAAAATGAACAAGGAAAGG+AGG | 0.612530 | 4.3:-4814806 | MS.gene55779:CDS |
| TTTCATTGTCAACCACTGCG+AGG | 0.613283 | 4.3:+4815447 | None:intergenic |
| GAGGAGGGTACGTTGAACTT+GGG | 0.614718 | 4.3:-4814588 | MS.gene55779:CDS |
| TCCTACAGAAATTTATGACA+AGG | 0.617898 | 4.3:-4816463 | MS.gene55779:intron |
| GATCACTACCTTAATGAGGA+TGG | 0.627075 | 4.3:-4815968 | MS.gene55779:CDS |
| CCTTAATGAGGATGGCACCC+CGG | 0.628053 | 4.3:-4815960 | MS.gene55779:CDS |
| TTGCTGAATTATCTCCAGGA+GGG | 0.629209 | 4.3:+4815715 | None:intergenic |
| AGTTCTGAAACTTGGTTCCG+CGG | 0.631255 | 4.3:+4816282 | None:intergenic |
| TAGAGGCAAAGGCAAGAAAG+GGG | 0.635133 | 4.3:-4814695 | MS.gene55779:CDS |
| GATAAAGAAAAGCAGCTCCA+GGG | 0.645057 | 4.3:-4816177 | MS.gene55779:CDS |
| TTTGCAGATTGATTATCACA+GGG | 0.655274 | 4.3:-4814532 | MS.gene55779:CDS |
| TGAGAATGTCGAGAATCTTG+GGG | 0.660209 | 4.3:-4815147 | MS.gene55779:CDS |
| AGAGGCAAAGGCAAGAAAGG+GGG | 0.662607 | 4.3:-4814694 | MS.gene55779:CDS |
| CTATCACAAGTACTAAAGAG+TGG | 0.663853 | 4.3:-4814950 | MS.gene55779:CDS |
| CATGTGAGATGTTTGAGATG+CGG | 0.669216 | 4.3:+4814856 | None:intergenic |
| ATATATCAATAAAATGAACA+AGG | 0.669640 | 4.3:-4814814 | MS.gene55779:CDS |
| AGGGGCACAACTTAGGTCCG+CGG | 0.670503 | 4.3:-4816299 | MS.gene55779:CDS |
| GTTGCTGAATTATCTCCAGG+AGG | 0.672896 | 4.3:+4815714 | None:intergenic |
| TAAATATGACAAACTTGACG+AGG | 0.676853 | 4.3:-4816418 | MS.gene55779:CDS |
| TAAACAAGATTCAGTTCACG+TGG | 0.677408 | 4.3:-4815690 | MS.gene55779:CDS |
| ATGGCGGAAGAGTTTCGTCA+AGG | 0.679047 | 4.3:-4815269 | MS.gene55779:CDS |
| GGAAAAGGTTGAAAAGCTAG+AGG | 0.680606 | 4.3:-4814712 | MS.gene55779:CDS |
| ACAATATGAAGAGCAAGCAA+GGG | 0.681780 | 4.3:-4815864 | MS.gene55779:CDS |
| TTCATATCAAAGACTCGCCG+GGG | 0.684979 | 4.3:-4814486 | MS.gene55779:CDS |
| ATCTTCATGATCATCTAGAG+GGG | 0.685380 | 4.3:-4816317 | MS.gene55779:CDS |
| CTTGGGAGAGGAAAAGAGGG+AGG | 0.688336 | 4.3:-4814571 | MS.gene55779:CDS |
| GAGGAAGATGGAAATAATGG+CGG | 0.690602 | 4.3:-4815285 | MS.gene55779:CDS |
| CATTTGTTGGAGGAGCTGCA+GGG | 0.693707 | 4.3:-4814762 | MS.gene55779:CDS |
| GGAAGAGGAATTAACTCTGG+GGG | 0.701523 | 4.3:-4814733 | MS.gene55779:CDS |
| TCAAACTTGAAGTTGCAGAG+AGG | 0.717424 | 4.3:-4815304 | MS.gene55779:CDS |
| GGGAAGAGGAATTAACTCTG+GGG | 0.768423 | 4.3:-4814734 | MS.gene55779:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATATCAATAAAATGAACA+AGG | - | chr4.3:4816566-4816585 | MS.gene55779:intron | 15.0% |
| !!! | TAGGAAAAGTATAAAAAAAA+AGG | + | chr4.3:4814611-4814630 | None:intergenic | 15.0% |
| !! | AAATTGAAGACAAAGTAAAA+AGG | - | chr4.3:4815371-4815390 | MS.gene55779:CDS | 20.0% |
| !!! | TATACTTTTCCTATAGAAAT+TGG | - | chr4.3:4814618-4814637 | MS.gene55779:CDS | 20.0% |
| ! | AAAAGCAAATAAATGATCAC+AGG | - | chr4.3:4815746-4815765 | MS.gene55779:CDS | 25.0% |
| ! | AAATTGGAGACAAAGTAAAA+AGG | - | chr4.3:4814634-4814653 | MS.gene55779:CDS | 25.0% |
| ! | CATATTGTGCATAAAGAAAT+TGG | + | chr4.3:4815504-4815523 | None:intergenic | 25.0% |
| ! | CTTATTAAAGATGACAAACT+TGG | - | chr4.3:4814666-4814685 | MS.gene55779:CDS | 25.0% |
| ! | TATCTGTTATCAATCTTATC+AGG | - | chr4.3:4815153-4815172 | MS.gene55779:CDS | 25.0% |
| ! | TCAATAAAATGAACAAGGAA+AGG | - | chr4.3:4816571-4816590 | MS.gene55779:intron | 25.0% |
| ! | TGATTTATGTATATCAGCTT+TGG | - | chr4.3:4814857-4814876 | MS.gene55779:CDS | 25.0% |
| !! | AGAAAATAACATCACCTTTT+TGG | - | chr4.3:4816209-4816228 | MS.gene55779:CDS | 25.0% |
| !! | GATTTTTGTATATCACCTTA+TGG | - | chr4.3:4815306-4815325 | MS.gene55779:CDS | 25.0% |
| !!! | TGTTATTTTCTTTCTTTTCC+AGG | + | chr4.3:4816200-4816219 | None:intergenic | 25.0% |
| AAATTCACGCATACATGATA+AGG | + | chr4.3:4815638-4815657 | None:intergenic | 30.0% | |
| ACAGCAGAATTGTGATATAA+TGG | - | chr4.3:4814566-4814585 | MS.gene55779:CDS | 30.0% | |
| ACCTTGTCATAAATTTCTGT+AGG | + | chr4.3:4814921-4814940 | None:intergenic | 30.0% | |
| ACTTCTGAATTGTGATATGA+TGG | - | chr4.3:4815258-4815277 | MS.gene55779:CDS | 30.0% | |
| ACTTTGTCTCCAATTTCTAT+AGG | + | chr4.3:4814630-4814649 | None:intergenic | 30.0% | |
| AGAACAATTGCTAAGTGAAA+AGG | - | chr4.3:4816293-4816312 | MS.gene55779:CDS | 30.0% | |
| ATAAAATGAACAAGGAAAGG+AGG | - | chr4.3:4816574-4816593 | MS.gene55779:intron | 30.0% | |
| ATATCACAATTCAGAAGTCA+TGG | + | chr4.3:4815256-4815275 | None:intergenic | 30.0% | |
| ATATCACAATTCAGTTGTCA+TGG | + | chr4.3:4814808-4814827 | None:intergenic | 30.0% | |
| GAACAATTGCTAAGTGAAAA+GGG | - | chr4.3:4816294-4816313 | MS.gene55779:CDS | 30.0% | |
| GACAGATAAAAACCATTTGT+TGG | - | chr4.3:4816605-4816624 | MS.gene55779:intron | 30.0% | |
| GAGACAAAGTAAAAAGGATT+TGG | - | chr4.3:4814640-4814659 | MS.gene55779:CDS | 30.0% | |
| GGATGATCAAACAAATGATT+TGG | - | chr4.3:4814878-4814897 | MS.gene55779:CDS | 30.0% | |
| TAAATATGACAAACTTGACG+AGG | - | chr4.3:4814962-4814981 | MS.gene55779:CDS | 30.0% | |
| TAATGATCACTACCTTAATG+AGG | - | chr4.3:4815408-4815427 | MS.gene55779:CDS | 30.0% | |
| TATCTTCATGATCATCTAGA+GGG | - | chr4.3:4815062-4815081 | MS.gene55779:CDS | 30.0% | |
| TCCTACAGAAATTTATGACA+AGG | - | chr4.3:4814917-4814936 | MS.gene55779:CDS | 30.0% | |
| TCCTTAATAAATTCAGCAAG+TGG | + | chr4.3:4815466-4815485 | None:intergenic | 30.0% | |
| TGAATTAGCCAACAAAAACA+TGG | - | chr4.3:4815960-4815979 | MS.gene55779:CDS | 30.0% | |
| TTTGCAGATTGATTATCACA+GGG | - | chr4.3:4816848-4816867 | MS.gene55779:intron | 30.0% | |
| ! | ACCACTTGCTGAATTTATTA+AGG | - | chr4.3:4815462-4815481 | MS.gene55779:CDS | 30.0% |
| ! | AGATAAAAACCATTTGTTGG+AGG | - | chr4.3:4816608-4816627 | MS.gene55779:intron | 30.0% |
| ! | TAGTTCCTTTTCTCTTTCTT+TGG | + | chr4.3:4815135-4815154 | None:intergenic | 30.0% |
| AATTCATATCAAAGACTCGC+CGG | - | chr4.3:4816892-4816911 | MS.gene55779:CDS | 35.0% | |
| ACAATATGAAGAGCAAGCAA+GGG | - | chr4.3:4815516-4815535 | MS.gene55779:CDS | 35.0% | |
| AGAGAGGAAGATGGAAATAA+TGG | - | chr4.3:4816092-4816111 | MS.gene55779:intron | 35.0% | |
| ATATCACAATTCTGCTGTCA+TGG | + | chr4.3:4814564-4814583 | None:intergenic | 35.0% | |
| ATCTTCATGATCATCTAGAG+GGG | - | chr4.3:4815063-4815082 | MS.gene55779:CDS | 35.0% | |
| ATGAAAAGCTTCATTGTCAG+CGG | + | chr4.3:4816406-4816425 | None:intergenic | 35.0% | |
| CAGGAATGAGATAAGTAAAC+TGG | - | chr4.3:4815765-4815784 | MS.gene55779:CDS | 35.0% | |
| CCAAGTTTCAGAACTTGAAA+TGG | - | chr4.3:4815106-4815125 | MS.gene55779:CDS | 35.0% | |
| CCAGAAAGCAAAAGAAGAAA+TGG | - | chr4.3:4815870-4815889 | MS.gene55779:CDS | 35.0% | |
| CTATCACAAGTACTAAAGAG+TGG | - | chr4.3:4816430-4816449 | MS.gene55779:CDS | 35.0% | |
| CTATCTTCATGATCATCTAG+AGG | - | chr4.3:4815061-4815080 | MS.gene55779:CDS | 35.0% | |
| CTTGTCAAACCAAAATATCC+GGG | - | chr4.3:4816266-4816285 | MS.gene55779:CDS | 35.0% | |
| GATAAAGAAAAGCAGCTTCA+GGG | - | chr4.3:4814494-4814513 | MS.gene55779:CDS | 35.0% | |
| GCTTGTCAAACCAAAATATC+CGG | - | chr4.3:4816265-4816284 | MS.gene55779:CDS | 35.0% | |
| GGGAGAGAAAATAGATCATT+TGG | - | chr4.3:4815807-4815826 | MS.gene55779:CDS | 35.0% | |
| GTTTGCAGATTGATTATCAC+AGG | - | chr4.3:4816847-4816866 | MS.gene55779:intron | 35.0% | |
| TAAACAAGATTCAGTTCACG+TGG | - | chr4.3:4815690-4815709 | MS.gene55779:CDS | 35.0% | |
| TAGATGATCATGAAGATAGC+AGG | + | chr4.3:4815060-4815079 | None:intergenic | 35.0% | |
| TATGTTGCTGAATTATCTCC+AGG | + | chr4.3:4815672-4815691 | None:intergenic | 35.0% | |
| TGAATTTAATAAGTCCCTCC+TGG | - | chr4.3:4815651-4815670 | MS.gene55779:CDS | 35.0% | |
| TGATAAAGAAAAGCAGCTTC+AGG | - | chr4.3:4814493-4814512 | MS.gene55779:CDS | 35.0% | |
| TGCTATCATGATCATCTTGA+GGG | - | chr4.3:4814738-4814757 | MS.gene55779:CDS | 35.0% | |
| TTAGCAATTGTTCTTTGTCC+CGG | + | chr4.3:4816287-4816306 | None:intergenic | 35.0% | |
| TTGAGAATGTCGAGAATCTT+GGG | - | chr4.3:4816232-4816251 | MS.gene55779:CDS | 35.0% | |
| ! | CCATTTCTTCTTTTGCTTTC+TGG | + | chr4.3:4815873-4815892 | None:intergenic | 35.0% |
| ! | TCTTTTCCAGGTCTTTTTTC+AGG | + | chr4.3:4816188-4816207 | None:intergenic | 35.0% |
| ! | TTCTTCTTTTGCTTTCTGGA+GGG | + | chr4.3:4815869-4815888 | None:intergenic | 35.0% |
| ! | TTTCTTCTTTTGCTTTCTGG+AGG | + | chr4.3:4815870-4815889 | None:intergenic | 35.0% |
| !! | CCATTTCAAGTTCTGAAACT+TGG | + | chr4.3:4815109-4815128 | None:intergenic | 35.0% |
| !! | CTGAAGATCCATGTTTTTGT+TGG | + | chr4.3:4815971-4815990 | None:intergenic | 35.0% |
| !! | TGCGGTTCTCAATATTTTTG+TGG | + | chr4.3:4816509-4816528 | None:intergenic | 35.0% |
| !!! | CTTTTTTCAGGTCTTCAACT+TGG | + | chr4.3:4816176-4816195 | None:intergenic | 35.0% |
| !!! | TGAAGCTGCTTTTCTTTATC+AGG | + | chr4.3:4814494-4814513 | None:intergenic | 35.0% |
| AAACATCTCACATGAGCTTC+AGG | - | chr4.3:4816533-4816552 | MS.gene55779:intron | 40.0% | |
| AAGGGAAGAGGAATTAACTC+TGG | - | chr4.3:4816644-4816663 | MS.gene55779:CDS | 40.0% | |
| AGGGAAGAGGAATTAACTCT+GGG | - | chr4.3:4816645-4816664 | MS.gene55779:CDS | 40.0% | |
| ATTCATATCAAAGACTCGCC+GGG | - | chr4.3:4816893-4816912 | MS.gene55779:CDS | 40.0% | |
| CACAATATGAAGAGCAAGCA+AGG | - | chr4.3:4815515-4815534 | MS.gene55779:CDS | 40.0% | |
| CATTGGGTCAAAAGATCAGA+TGG | - | chr4.3:4816134-4816153 | MS.gene55779:intron | 40.0% | |
| CATTTGTTCGAGCTACCATA+AGG | + | chr4.3:4815324-4815343 | None:intergenic | 40.0% | |
| CCTTCTTCAAAAGTTCTGCT+CGG | + | chr4.3:4814995-4815014 | None:intergenic | 40.0% | |
| CTCGACATTCTCAACCAAAA+AGG | + | chr4.3:4816226-4816245 | None:intergenic | 40.0% | |
| CTGCTATCATGATCATCTTG+AGG | - | chr4.3:4814737-4814756 | MS.gene55779:CDS | 40.0% | |
| GAGGAAGATGGAAATAATGG+CGG | - | chr4.3:4816095-4816114 | MS.gene55779:intron | 40.0% | |
| GATAAAGAAAAGCAGCTCCA+GGG | - | chr4.3:4815203-4815222 | MS.gene55779:CDS | 40.0% | |
| GATAGCAGGTGAGTTGTTTA+TGG | + | chr4.3:4815046-4815065 | None:intergenic | 40.0% | |
| GATCACTACCTTAATGAGGA+TGG | - | chr4.3:4815412-4815431 | MS.gene55779:CDS | 40.0% | |
| GGAAAAGGTTGAAAAGCTAG+AGG | - | chr4.3:4816668-4816687 | MS.gene55779:CDS | 40.0% | |
| GGAGTCCAAAGAAAGAGAAA+AGG | - | chr4.3:4815127-4815146 | MS.gene55779:CDS | 40.0% | |
| GGTAGCTCGAACAAATGATT+TGG | - | chr4.3:4815327-4815346 | MS.gene55779:CDS | 40.0% | |
| GGTGCAAAGTGTAATTGTGT+GGG | + | chr4.3:4814787-4814806 | None:intergenic | 40.0% | |
| GGTGCATAGTGTAATTGTGT+GGG | + | chr4.3:4814543-4814562 | None:intergenic | 40.0% | |
| GTTGAGAATGTCGAGAATCT+TGG | - | chr4.3:4816231-4816250 | MS.gene55779:CDS | 40.0% | |
| TATGACAAACTTGACGAGGA+TGG | - | chr4.3:4814966-4814985 | MS.gene55779:CDS | 40.0% | |
| TCAAACTTGAAGTTGCAGAG+AGG | - | chr4.3:4816076-4816095 | MS.gene55779:intron | 40.0% | |
| TCCCTCTTCAAAATTTCTGC+CGG | + | chr4.3:4815442-4815461 | None:intergenic | 40.0% | |
| TCCTCAACCAATTTAGCAAG+TGG | + | chr4.3:4815020-4815039 | None:intergenic | 40.0% | |
| TGAAGACCTGAAAAAAGACC+TGG | - | chr4.3:4816179-4816198 | MS.gene55779:CDS | 40.0% | |
| TGAAGAGCTAGAGAAGTTGA+TGG | - | chr4.3:4816761-4816780 | MS.gene55779:intron | 40.0% | |
| TGAGAATGTCGAGAATCTTG+GGG | - | chr4.3:4816233-4816252 | MS.gene55779:CDS | 40.0% | |
| TGAGATAAGTAAACTGGCAC+AGG | - | chr4.3:4815771-4815790 | MS.gene55779:CDS | 40.0% | |
| TGATAAAGAAAAGCAGCTCC+AGG | - | chr4.3:4815202-4815221 | MS.gene55779:CDS | 40.0% | |
| TGGTGCAAAGTGTAATTGTG+TGG | + | chr4.3:4814788-4814807 | None:intergenic | 40.0% | |
| TGGTGCATAGTGTAATTGTG+TGG | + | chr4.3:4814544-4814563 | None:intergenic | 40.0% | |
| TGGTTCAACAGTGTGATATC+TGG | - | chr4.3:4816450-4816469 | MS.gene55779:CDS | 40.0% | |
| TTGATGGAAGAGAAAGAGGA+GGG | - | chr4.3:4816777-4816796 | MS.gene55779:intron | 40.0% | |
| TTGCTGAATTATCTCCAGGA+GGG | + | chr4.3:4815668-4815687 | None:intergenic | 40.0% | |
| ! | AAGAGTTTCGTCAAGGCATT+GGG | - | chr4.3:4816118-4816137 | MS.gene55779:intron | 40.0% |
| ! | ACCACTTGCTAAATTGGTTG+AGG | - | chr4.3:4815016-4815035 | MS.gene55779:CDS | 40.0% |
| ! | AGATCAGATGGTTGCTGATT+TGG | - | chr4.3:4816146-4816165 | MS.gene55779:intron | 40.0% |
| ! | CATGTGAGATGTTTGAGATG+CGG | + | chr4.3:4816527-4816546 | None:intergenic | 40.0% |
| ! | GAAGGAACCACTTGCTAAAT+TGG | - | chr4.3:4815010-4815029 | MS.gene55779:CDS | 40.0% |
| ! | GTTCTTTGTCCCGGATATTT+TGG | + | chr4.3:4816278-4816297 | None:intergenic | 40.0% |
| !! | AAAGGGAGAGAGCTTTAGAA+AGG | - | chr4.3:4816311-4816330 | MS.gene55779:CDS | 40.0% |
| !! | ATCAGAGAGCACTTCAAATC+AGG | - | chr4.3:4816355-4816374 | MS.gene55779:CDS | 40.0% |
| !! | GAAGTTGATGGAAGAGAAAG+AGG | - | chr4.3:4816773-4816792 | MS.gene55779:intron | 40.0% |
| !! | GCACAGGAGAATTTGTTGAT+GGG | - | chr4.3:4815787-4815806 | MS.gene55779:CDS | 40.0% |
| CCCTCTTCAAAATTTCTGCC+GGG | + | chr4.3:4815441-4815460 | None:intergenic | 45.0% | |
| CCTCTTCAAAATTTCTGCCG+GGG | + | chr4.3:4815440-4815459 | None:intergenic | 45.0% | |
| CTAGAGGCAAAGGCAAGAAA+GGG | - | chr4.3:4816684-4816703 | MS.gene55779:CDS | 45.0% | |
| GAACTTGGGAGAGGAAAAGA+GGG | - | chr4.3:4816806-4816825 | MS.gene55779:intron | 45.0% | |
| GAAGAGTTTCGTCAAGGCAT+TGG | - | chr4.3:4816117-4816136 | MS.gene55779:intron | 45.0% | |
| GATGACAAACTTGGCGAAGA+TGG | - | chr4.3:4814675-4814694 | MS.gene55779:CDS | 45.0% | |
| GGAAGAGGAATTAACTCTGG+GGG | - | chr4.3:4816647-4816666 | MS.gene55779:CDS | 45.0% | |
| GGAGCGCAATGACTATCTAA+AGG | - | chr4.3:4816869-4816888 | MS.gene55779:intron | 45.0% | |
| GGGAAGAGGAATTAACTCTG+GGG | - | chr4.3:4816646-4816665 | MS.gene55779:CDS | 45.0% | |
| GGTTGAAAAGCTAGAGGCAA+AGG | - | chr4.3:4816674-4816693 | MS.gene55779:CDS | 45.0% | |
| GTTGCTGAATTATCTCCAGG+AGG | + | chr4.3:4815669-4815688 | None:intergenic | 45.0% | |
| TAGAGGCAAAGGCAAGAAAG+GGG | - | chr4.3:4816685-4816704 | MS.gene55779:CDS | 45.0% | |
| TGAACTTGGGAGAGGAAAAG+AGG | - | chr4.3:4816805-4816824 | MS.gene55779:intron | 45.0% | |
| TGAAGTTGCAGAGAGGAAGA+TGG | - | chr4.3:4816083-4816102 | MS.gene55779:intron | 45.0% | |
| TGCTACTGCAGAAGCAACAA+TGG | - | chr4.3:4816380-4816399 | MS.gene55779:CDS | 45.0% | |
| TTCATATCAAAGACTCGCCG+GGG | - | chr4.3:4816894-4816913 | MS.gene55779:CDS | 45.0% | |
| TTCATTGTCAACCACTGCGA+GGG | + | chr4.3:4815935-4815954 | None:intergenic | 45.0% | |
| TTTCATTGTCAACCACTGCG+AGG | + | chr4.3:4815936-4815955 | None:intergenic | 45.0% | |
| ! | GGAATTAACTCTGGGGGAAA+AGG | - | chr4.3:4816653-4816672 | MS.gene55779:CDS | 45.0% |
| ! | GTTGATGGAAGAGAAAGAGG+AGG | - | chr4.3:4816776-4816795 | MS.gene55779:intron | 45.0% |
| ! | TTGTACCTTCTTTAGCTCCC+TGG | + | chr4.3:4815223-4815242 | None:intergenic | 45.0% |
| !! | AGTTCTGAAACTTGGTTCCG+CGG | + | chr4.3:4815101-4815120 | None:intergenic | 45.0% |
| !! | CAATTCAGCTAGTTCTGCTC+TGG | + | chr4.3:4814703-4814722 | None:intergenic | 45.0% |
| !! | CCCGGCAGAAATTTTGAAGA+GGG | - | chr4.3:4815438-4815457 | MS.gene55779:CDS | 45.0% |
| !! | CCGAGCAGAACTTTTGAAGA+AGG | - | chr4.3:4814992-4815011 | MS.gene55779:CDS | 45.0% |
| !! | GGCACAGGAGAATTTGTTGA+TGG | - | chr4.3:4815786-4815805 | MS.gene55779:CDS | 45.0% |
| ACATGCAAAAACCCTCGCAG+TGG | - | chr4.3:4815921-4815940 | MS.gene55779:CDS | 50.0% | |
| AGAGGCAAAGGCAAGAAAGG+GGG | - | chr4.3:4816686-4816705 | MS.gene55779:CDS | 50.0% | |
| CAGCTTCAGGGAGCTAAAAC+AGG | - | chr4.3:4814506-4814525 | MS.gene55779:CDS | 50.0% | |
| CATCTTGAGGGAGCTAAACC+AGG | - | chr4.3:4814750-4814769 | MS.gene55779:CDS | 50.0% | |
| CTGCAAACAAAGCTGCCTGA+TGG | + | chr4.3:4816835-4816854 | None:intergenic | 50.0% | |
| GCTAGAGGCAAAGGCAAGAA+AGG | - | chr4.3:4816683-4816702 | MS.gene55779:CDS | 50.0% | |
| GTGTGGGTAGAGATTGTACC+TGG | + | chr4.3:4814527-4814546 | None:intergenic | 50.0% | |
| ! | AGAGGAGGGTACGTTGAACT+TGG | - | chr4.3:4816791-4816810 | MS.gene55779:intron | 50.0% |
| ! | ATGGCGGAAGAGTTTCGTCA+AGG | - | chr4.3:4816111-4816130 | MS.gene55779:intron | 50.0% |
| ! | CATCTAGAGGGGCACAACTT+AGG | - | chr4.3:4815074-4815093 | MS.gene55779:CDS | 50.0% |
| ! | CATTTGTTGGAGGAGCTGCA+GGG | - | chr4.3:4816618-4816637 | MS.gene55779:intron | 50.0% |
| ! | GAGGAGGGTACGTTGAACTT+GGG | - | chr4.3:4816792-4816811 | MS.gene55779:intron | 50.0% |
| !! | CCCCGGCAGAAATTTTGAAG+AGG | - | chr4.3:4815437-4815456 | MS.gene55779:CDS | 50.0% |
| AGGAAAAGAGGGAGGCCATC+AGG | - | chr4.3:4816817-4816836 | MS.gene55779:intron | 55.0% | |
| CAGCTCCAGGGAGCTAAAGA+AGG | - | chr4.3:4815215-4815234 | MS.gene55779:CDS | 55.0% | |
| CCTGCAGCTCCTCCAACAAA+TGG | + | chr4.3:4816620-4816639 | None:intergenic | 55.0% | |
| CCTTAATGAGGATGGCACCC+CGG | - | chr4.3:4815420-4815439 | MS.gene55779:CDS | 55.0% | |
| CTTGGGAGAGGAAAAGAGGG+AGG | - | chr4.3:4816809-4816828 | MS.gene55779:intron | 55.0% | |
| GCTGCAGGGTAAAAGGGAAG+AGG | - | chr4.3:4816632-4816651 | MS.gene55779:CDS | 55.0% | |
| GGAGGAGCTGCAGGGTAAAA+GGG | - | chr4.3:4816626-4816645 | MS.gene55779:intron | 55.0% | |
| GGGTACGTTGAACTTGGGAG+AGG | - | chr4.3:4816797-4816816 | MS.gene55779:intron | 55.0% | |
| TGGAGGAGCTGCAGGGTAAA+AGG | - | chr4.3:4816625-4816644 | MS.gene55779:intron | 55.0% | |
| ! | CCATTTGTTGGAGGAGCTGC+AGG | - | chr4.3:4816617-4816636 | MS.gene55779:intron | 55.0% |
| ! | AGGGGCACAACTTAGGTCCG+CGG | - | chr4.3:4815081-4815100 | MS.gene55779:CDS | 60.0% |
| ! | CCGGGGTGCCATCCTCATTA+AGG | + | chr4.3:4815423-4815442 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.3 | gene | 4814470 | 4816932 | 4814470 | ID=MS.gene55779 |
| chr4.3 | mRNA | 4814470 | 4816932 | 4814470 | ID=MS.gene55779.t1;Parent=MS.gene55779 |
| chr4.3 | exon | 4816875 | 4816932 | 4816875 | ID=MS.gene55779.t1.exon1;Parent=MS.gene55779.t1 |
| chr4.3 | CDS | 4816875 | 4816932 | 4816875 | ID=cds.MS.gene55779.t1;Parent=MS.gene55779.t1 |
| chr4.3 | exon | 4816631 | 4816768 | 4816631 | ID=MS.gene55779.t1.exon2;Parent=MS.gene55779.t1 |
| chr4.3 | CDS | 4816631 | 4816768 | 4816631 | ID=cds.MS.gene55779.t1;Parent=MS.gene55779.t1 |
| chr4.3 | exon | 4816166 | 4816477 | 4816166 | ID=MS.gene55779.t1.exon3;Parent=MS.gene55779.t1 |
| chr4.3 | CDS | 4816166 | 4816477 | 4816166 | ID=cds.MS.gene55779.t1;Parent=MS.gene55779.t1 |
| chr4.3 | exon | 4814470 | 4816031 | 4814470 | ID=MS.gene55779.t1.exon4;Parent=MS.gene55779.t1 |
| chr4.3 | CDS | 4814470 | 4816031 | 4814470 | ID=cds.MS.gene55779.t1;Parent=MS.gene55779.t1 |
| Gene Sequence |
| Protein sequence |
