Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene55780.t1 | XP_013447170.2 | 86.5 | 734 | 99 | 0 | 1 | 734 | 1 | 734 | 7.00E-273 | 949.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene55780.t1 | F4JZY1 | 64.4 | 45 | 14 | 1 | 690 | 732 | 1536 | 1580 | 1.0e-06 | 57.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene55780.t1 | A0A072TUT3 | 85.7 | 659 | 94 | 0 | 76 | 734 | 1 | 659 | 1.3e-231 | 812.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene55780 | MS.gene01425 | PPI |
| MS.gene55780 | MS.gene60920 | PPI |
| MS.gene55780 | MS.gene92243 | PPI |
| MS.gene55780 | MS.gene065848 | PPI |
| MS.gene55780 | MS.gene005205 | PPI |
| MS.gene55780 | MS.gene49380 | PPI |
| MS.gene55780 | MS.gene018136 | PPI |
| MS.gene55780 | MS.gene44072 | PPI |
| MS.gene55780 | MS.gene036192 | PPI |
| MS.gene55780 | MS.gene97766 | PPI |
| MS.gene55780 | MS.gene96757 | PPI |
| MS.gene55780 | MS.gene50540 | PPI |
| MS.gene55780 | MS.gene047578 | PPI |
| MS.gene55780 | MS.gene43392 | PPI |
| MS.gene55780 | MS.gene005262 | PPI |
| MS.gene55780 | MS.gene90400 | PPI |
| MS.gene55780 | MS.gene40883 | PPI |
| MS.gene55780 | MS.gene39948 | PPI |
| MS.gene55780 | MS.gene002442 | PPI |
| MS.gene55780 | MS.gene01091 | PPI |
| MS.gene55780 | MS.gene054884 | PPI |
| MS.gene55780 | MS.gene020278 | PPI |
| MS.gene55780 | MS.gene91179 | PPI |
| MS.gene55780 | MS.gene071322 | PPI |
| MS.gene55780 | MS.gene056066 | PPI |
| MS.gene54368 | MS.gene55780 | PPI |
| MS.gene55780 | MS.gene44133 | PPI |
| MS.gene55780 | MS.gene056067 | PPI |
| MS.gene55780 | MS.gene91529 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene55780.t1 | MTR_8g099290 | 92.109 | 659 | 52 | 0 | 76 | 734 | 1 | 659 | 0.0 | 1173 |
| MS.gene55780.t1 | MTR_8g099275 | 66.239 | 702 | 158 | 7 | 78 | 734 | 556 | 1223 | 0.0 | 805 |
| MS.gene55780.t1 | MTR_8g099275 | 42.092 | 392 | 168 | 9 | 50 | 388 | 397 | 782 | 1.40e-54 | 204 |
| MS.gene55780.t1 | MTR_8g099280 | 54.060 | 431 | 122 | 6 | 329 | 734 | 167 | 546 | 2.53e-120 | 372 |
| MS.gene55780.t1 | MTR_8g099280 | 76.389 | 72 | 14 | 1 | 1 | 72 | 1 | 69 | 2.16e-27 | 117 |
| MS.gene55780.t1 | MTR_8g099265 | 25.151 | 827 | 478 | 24 | 2 | 728 | 12 | 797 | 1.03e-29 | 126 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene55780.t1 | AT5G41790 | 27.391 | 617 | 309 | 14 | 188 | 732 | 1031 | 1580 | 3.08e-37 | 150 |
| MS.gene55780.t1 | AT5G41790 | 35.533 | 197 | 100 | 2 | 58 | 234 | 1064 | 1253 | 3.49e-16 | 84.0 |
| MS.gene55780.t1 | AT5G41790 | 27.391 | 617 | 309 | 14 | 188 | 732 | 1031 | 1580 | 3.08e-37 | 150 |
| MS.gene55780.t1 | AT5G41790 | 35.533 | 197 | 100 | 2 | 58 | 234 | 1064 | 1253 | 3.49e-16 | 84.0 |
| MS.gene55780.t1 | AT1G64330 | 31.527 | 203 | 122 | 4 | 436 | 622 | 275 | 476 | 2.52e-13 | 73.9 |
| MS.gene55780.t1 | AT5G41780 | 34.524 | 168 | 93 | 5 | 562 | 724 | 375 | 530 | 6.65e-11 | 65.9 |
| MS.gene55780.t1 | AT5G41780 | 34.524 | 168 | 93 | 5 | 562 | 724 | 375 | 530 | 6.65e-11 | 65.9 |
| MS.gene55780.t1 | AT5G41780 | 34.524 | 168 | 93 | 5 | 562 | 724 | 375 | 530 | 6.65e-11 | 65.9 |
| MS.gene55780.t1 | AT5G41780 | 34.524 | 168 | 93 | 5 | 562 | 724 | 375 | 530 | 6.65e-11 | 65.9 |
Find 125 sgRNAs with CRISPR-Local
Find 154 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCATTTCAAGTTCTGAAATT+TGG | 0.197686 | 4.3:+4810712 | None:intergenic |
| TAGTTCCTCTTCTCTTTCTT+TGG | 0.220995 | 4.3:+4810686 | None:intergenic |
| CCTCATCTCCTTTCTCTTCC+AGG | 0.244283 | 4.3:+4809395 | None:intergenic |
| AGATCAGATGGCAGCTGATT+TGG | 0.259482 | 4.3:-4809446 | MS.gene55780:CDS |
| GAACTTCCAAGTCAGATTTC+TGG | 0.263958 | 4.3:+4810496 | None:intergenic |
| GGAGGAGTTGCAGGGTAAAA+AGG | 0.265667 | 4.3:-4809020 | MS.gene55780:CDS |
| AGTGTTCAACTCACAGTCTT+TGG | 0.290321 | 4.3:+4809969 | None:intergenic |
| TTTCCAAGATAAGCTTAATA+AGG | 0.290572 | 4.3:-4810169 | MS.gene55780:CDS |
| CCATTTGTTGGAGGAGTTGC+AGG | 0.293583 | 4.3:-4809029 | MS.gene55780:CDS |
| GTTCTTCAGCTACACTCTTC+TGG | 0.293768 | 4.3:+4810001 | None:intergenic |
| CACCTCATTTGTATTGCTTT+CGG | 0.295061 | 4.3:+4810554 | None:intergenic |
| GTCGATCGAAAAGCTGAAAT+TGG | 0.301818 | 4.3:-4810043 | MS.gene55780:CDS |
| CTGCCTTATTAAGCTTATCT+TGG | 0.303487 | 4.3:+4810166 | None:intergenic |
| ATTTGAGTTCTCTGCACTTC+AGG | 0.313512 | 4.3:-4809815 | MS.gene55780:CDS |
| AATCTTAATTTGCTCCTTGC+AGG | 0.324134 | 4.3:+4810116 | None:intergenic |
| GGGATCAACTCTGCAGAAAA+AGG | 0.356902 | 4.3:-4808993 | MS.gene55780:CDS |
| TTCTAAAGCTCTCTTCCTCT+TGG | 0.360119 | 4.3:+4809317 | None:intergenic |
| TGATAAAGAAAAGCAGCTTC+AGG | 0.360145 | 4.3:-4811001 | MS.gene55780:CDS |
| TAAGGCAGAGGAAGAATGTT+TGG | 0.360378 | 4.3:-4810151 | MS.gene55780:CDS |
| AAACATCTCATTCGAGCTTC+AGG | 0.374447 | 4.3:-4809113 | MS.gene55780:CDS |
| AAATTGAAGACAAAGTAAAA+AGG | 0.383239 | 4.3:-4810860 | MS.gene55780:CDS |
| GTGGATAAGGAGTCTGGAAT+TGG | 0.394781 | 4.3:-4810349 | MS.gene55780:CDS |
| CGACAGAATAGCAAAATTAG+AGG | 0.398184 | 4.3:-4810226 | MS.gene55780:CDS |
| TGTGTCAACAGTATGATATC+TGG | 0.404527 | 4.3:-4809196 | MS.gene55780:CDS |
| AAAATTTAACGATGTGGATA+AGG | 0.413797 | 4.3:-4810362 | MS.gene55780:CDS |
| AGGAAAAGAGGGAGGCCATC+AGG | 0.414307 | 4.3:-4808829 | MS.gene55780:CDS |
| TCTCTTCCTCTTGGTTTGAC+AGG | 0.421163 | 4.3:+4809326 | None:intergenic |
| CCATCAGGCAGCTTTGTTTG+AGG | 0.432125 | 4.3:-4808814 | MS.gene55780:CDS |
| TGAAGACTCTTCCTCTGCCT+TGG | 0.433978 | 4.3:+4809783 | None:intergenic |
| GAAGTTGATAAAAGAGAAAG+AGG | 0.434583 | 4.3:-4808873 | MS.gene55780:CDS |
| CAGCTTCAGGGAGCTAAAAC+AGG | 0.439095 | 4.3:-4810988 | MS.gene55780:intron |
| CATGGAGCAAGAGAGACTTA+TGG | 0.443666 | 4.3:-4810394 | MS.gene55780:CDS |
| GATGACAAACTTGGCGAAGA+TGG | 0.444149 | 4.3:-4810819 | MS.gene55780:CDS |
| CATCTGCTATCATGATCATC+TGG | 0.444596 | 4.3:-4810760 | MS.gene55780:CDS |
| CAGCGAGATGAGTAGGGAAA+AGG | 0.447914 | 4.3:-4809074 | MS.gene55780:CDS |
| CCACTATTCTCCGAAGATCC+AGG | 0.451178 | 4.3:+4809593 | None:intergenic |
| GAATGTATTGCGGCAGGAAG+TGG | 0.451293 | 4.3:-4810532 | MS.gene55780:CDS |
| AACGATGTGGATAAGGAGTC+TGG | 0.451970 | 4.3:-4810355 | MS.gene55780:CDS |
| TTCAGAGAGCACTTGAAGAC+AGG | 0.456552 | 4.3:-4809270 | MS.gene55780:CDS |
| CATAAGTCTCTCTTGCTCCA+TGG | 0.457161 | 4.3:+4810395 | None:intergenic |
| CTTATTAAAGATGACAAACT+TGG | 0.459122 | 4.3:-4810828 | MS.gene55780:CDS |
| CCTGGATCTTCGGAGAATAG+TGG | 0.461420 | 4.3:-4809593 | MS.gene55780:CDS |
| AGCGAGATGAGTAGGGAAAA+GGG | 0.470726 | 4.3:-4809073 | MS.gene55780:CDS |
| GTTTGAGGATTGATTATCAC+AGG | 0.472341 | 4.3:-4808799 | MS.gene55780:CDS |
| GCTAGAGGCAAAGGCAAGAA+AGG | 0.472686 | 4.3:-4808963 | MS.gene55780:CDS |
| CGAAGATGAAGAGCAAATAA+AGG | 0.476923 | 4.3:-4810298 | MS.gene55780:CDS |
| AATATAAACACATCGATAGT+TGG | 0.483166 | 4.3:-4809555 | MS.gene55780:CDS |
| TTCATTGTCAACCATTGTGA+GGG | 0.483407 | 4.3:+4809639 | None:intergenic |
| CCTGCAACTCCTCCAACAAA+TGG | 0.483822 | 4.3:+4809029 | None:intergenic |
| ACATGCTCAGAAAATTGAAC+TGG | 0.489009 | 4.3:-4810619 | MS.gene55780:CDS |
| TCGGAGAATAGTGGAAGAAC+GGG | 0.492348 | 4.3:-4809584 | MS.gene55780:CDS |
| AAGGCAGAGGAAGAGTCTTC+AGG | 0.498801 | 4.3:-4809781 | MS.gene55780:CDS |
| AAAGGAATTAAGCTCCTCTC+TGG | 0.498918 | 4.3:+4808729 | None:intergenic |
| GATAAAGAAAAGCAGCTTCA+GGG | 0.501153 | 4.3:-4811000 | MS.gene55780:CDS |
| GCAGAAAACAAAAGAAGAGT+TGG | 0.503519 | 4.3:-4809701 | MS.gene55780:CDS |
| GGGGCACAATTTAGAGTTGA+GGG | 0.505090 | 4.3:-4810736 | MS.gene55780:CDS |
| CGAAAAGCTGAAATTGGAGA+TGG | 0.508498 | 4.3:-4810037 | MS.gene55780:CDS |
| CCAAGTTGACAATCTGCAAA+AGG | 0.516726 | 4.3:-4809737 | MS.gene55780:CDS |
| AAGGAGTCTGGAATTGGAGA+TGG | 0.517960 | 4.3:-4810343 | MS.gene55780:CDS |
| AGAGGAGGGTATGTTGAACC+TGG | 0.521271 | 4.3:-4808855 | MS.gene55780:CDS |
| AAAAGAGACCTGGAAGAGAA+AGG | 0.522300 | 4.3:-4809403 | MS.gene55780:CDS |
| ATTGTCAACTTGGGCTGTGA+AGG | 0.523312 | 4.3:+4809747 | None:intergenic |
| TCATCTGACACAGCAGAAGT+TGG | 0.523679 | 4.3:-4810256 | MS.gene55780:CDS |
| GTGTCAACAGTATGATATCT+GGG | 0.528872 | 4.3:-4809195 | MS.gene55780:CDS |
| AATATCCGATGAGAGAGAAT+CGG | 0.530053 | 4.3:-4810202 | MS.gene55780:CDS |
| AAGTAATGAAGCTTCAACTC+AGG | 0.534118 | 4.3:-4810577 | MS.gene55780:CDS |
| TCAAATTCAAAGTCTGAAAG+AGG | 0.535899 | 4.3:-4810433 | MS.gene55780:CDS |
| GGATAAACTTTCCAAGGCAG+AGG | 0.537641 | 4.3:-4809794 | MS.gene55780:CDS |
| TGAAGACCTGAAAAGAGACC+TGG | 0.538192 | 4.3:-4809413 | MS.gene55780:CDS |
| TGAGGTGAATGTATTGCGGC+AGG | 0.539029 | 4.3:-4810538 | MS.gene55780:CDS |
| AATCTGTCAGCGAGATGAGT+AGG | 0.540179 | 4.3:-4809081 | MS.gene55780:CDS |
| TTTCATTGTCAACCATTGTG+AGG | 0.542166 | 4.3:+4809638 | None:intergenic |
| GGTTGAAAAGCTAGAGGCAA+AGG | 0.542679 | 4.3:-4808972 | MS.gene55780:CDS |
| TTCGGAGAATAGTGGAAGAA+CGG | 0.547270 | 4.3:-4809585 | MS.gene55780:CDS |
| ATGACTAATCGCTTGGATGT+TGG | 0.548668 | 4.3:+4810275 | None:intergenic |
| GAAGTCCAAAGAAAGAGAAG+AGG | 0.554619 | 4.3:-4810691 | MS.gene55780:CDS |
| CATTGGTTCAAAAGATCAGA+TGG | 0.554870 | 4.3:-4809458 | MS.gene55780:CDS |
| TGAACCTGGGAGAGGAAAAG+AGG | 0.555646 | 4.3:-4808841 | MS.gene55780:CDS |
| TAAACTGACACAGGAGAAGT+TGG | 0.555933 | 4.3:-4809887 | MS.gene55780:CDS |
| TTGATAAAAGAGAAAGAGGA+GGG | 0.557130 | 4.3:-4808869 | MS.gene55780:CDS |
| GTTGATAAAAGAGAAAGAGG+AGG | 0.557587 | 4.3:-4808870 | MS.gene55780:CDS |
| ACAACACCAGAAATCTGACT+TGG | 0.566725 | 4.3:-4810502 | MS.gene55780:CDS |
| AATAAGAGAAGAACATGCAC+AGG | 0.569025 | 4.3:-4809662 | MS.gene55780:CDS |
| GTGTCAGATGACTAATCGCT+TGG | 0.569201 | 4.3:+4810268 | None:intergenic |
| GGGTATGTTGAACCTGGGAG+AGG | 0.572182 | 4.3:-4808849 | MS.gene55780:CDS |
| AGAGGAAGAGAGCTTTAGAA+AGG | 0.575491 | 4.3:-4809314 | MS.gene55780:CDS |
| CTGCACGTTTAAGTTTGACC+TGG | 0.575917 | 4.3:+4809521 | None:intergenic |
| ATAAAGAAAATTTAACGATG+TGG | 0.577744 | 4.3:-4810368 | MS.gene55780:CDS |
| ATCTGTCAGCGAGATGAGTA+GGG | 0.578642 | 4.3:-4809080 | MS.gene55780:CDS |
| ACTTCAGGATAAACTTTCCA+AGG | 0.579657 | 4.3:-4809800 | MS.gene55780:CDS |
| AGATAAGCTTAATAAGGCAG+AGG | 0.580725 | 4.3:-4810163 | MS.gene55780:CDS |
| GAAGAGTTCCGTGAAGACAT+TGG | 0.581952 | 4.3:-4809475 | MS.gene55780:CDS |
| GGAGCGCAATGACTATCTAA+AGG | 0.585903 | 4.3:-4808777 | MS.gene55780:CDS |
| TGCTATCATGATCATCTGGA+GGG | 0.586280 | 4.3:-4810756 | MS.gene55780:CDS |
| AGGAGTCTGGAATTGGAGAT+GGG | 0.588723 | 4.3:-4810342 | MS.gene55780:CDS |
| CCTCAAACAAAGCTGCCTGA+TGG | 0.589108 | 4.3:+4808814 | None:intergenic |
| TAGTTGGTACAATGACTGCC+AGG | 0.589912 | 4.3:-4809539 | MS.gene55780:CDS |
| TAACTCCGATTCTCTCTCAT+CGG | 0.589985 | 4.3:+4810197 | None:intergenic |
| GAACCTGGGAGAGGAAAAGA+GGG | 0.590509 | 4.3:-4808840 | MS.gene55780:CDS |
| GCGAGATGAGTAGGGAAAAG+GGG | 0.597199 | 4.3:-4809072 | MS.gene55780:CDS |
| GACACAGGAGAAGTTGGAGC+TGG | 0.599447 | 4.3:-4809881 | MS.gene55780:CDS |
| GGTTGTAATATCTACCTGCA+AGG | 0.601672 | 4.3:-4810130 | MS.gene55780:CDS |
| CGAATGAGATGTTTGAGATG+CGG | 0.603915 | 4.3:+4809122 | None:intergenic |
| CTGCTATCATGATCATCTGG+AGG | 0.603974 | 4.3:-4810757 | MS.gene55780:CDS |
| AATTCATATCAAAGACTCGA+AGG | 0.604201 | 4.3:-4808754 | MS.gene55780:CDS |
| GGCCGAAAGCAATACAAATG+AGG | 0.612496 | 4.3:-4810556 | MS.gene55780:CDS |
| ATTCATATCAAAGACTCGAA+GGG | 0.615175 | 4.3:-4808753 | MS.gene55780:CDS |
| AATTCAAAGTCTGAAAGAGG+AGG | 0.620184 | 4.3:-4810430 | MS.gene55780:CDS |
| AGGGGCACAATTTAGAGTTG+AGG | 0.623036 | 4.3:-4810737 | MS.gene55780:CDS |
| CCTGGAAGAGAAAGGAGATG+AGG | 0.632606 | 4.3:-4809395 | MS.gene55780:CDS |
| TGACTTGGAAGTTCAGCTTG+TGG | 0.632873 | 4.3:-4810487 | MS.gene55780:CDS |
| CATTTGTTGGAGGAGTTGCA+GGG | 0.634017 | 4.3:-4809028 | MS.gene55780:CDS |
| CAAATGAGGTGAATGTATTG+CGG | 0.639829 | 4.3:-4810542 | MS.gene55780:CDS |
| TTCATATCAAAGACTCGAAG+GGG | 0.643254 | 4.3:-4808752 | MS.gene55780:CDS |
| GAGGAGGGTATGTTGAACCT+GGG | 0.643574 | 4.3:-4808854 | MS.gene55780:CDS |
| TTTGAGGATTGATTATCACA+GGG | 0.644334 | 4.3:-4808798 | MS.gene55780:CDS |
| AAGACTCGAAGGGGCCAGAG+AGG | 0.650634 | 4.3:-4808743 | MS.gene55780:CDS |
| GAAGAGAAAGGAGATGAGGT+CGG | 0.654702 | 4.3:-4809391 | MS.gene55780:CDS |
| GGAAGAGAGCTTTAGAAAGG+CGG | 0.655657 | 4.3:-4809311 | MS.gene55780:CDS |
| GCTATCATGATCATCTGGAG+GGG | 0.656885 | 4.3:-4810755 | MS.gene55780:CDS |
| GCTTTGCCTGTCAAACCAAG+AGG | 0.657188 | 4.3:-4809332 | MS.gene55780:CDS |
| ACATGCACAGGCCCTCACAA+TGG | 0.665629 | 4.3:-4809650 | MS.gene55780:CDS |
| TCACATCGCTAAACTGACAC+AGG | 0.671614 | 4.3:-4809896 | MS.gene55780:CDS |
| TGAGAATGTCATGAATCTTG+AGG | 0.677384 | 4.3:-4809359 | MS.gene55780:CDS |
| CCTGGGAGAGGAAAAGAGGG+AGG | 0.688336 | 4.3:-4808837 | MS.gene55780:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATTGAAGACAAAGTAAAA+AGG | - | chr4.3:4808900-4808919 | MS.gene55780:CDS | 20.0% |
| !! | ATAAAGAAAATTTAACGATG+TGG | - | chr4.3:4809392-4809411 | MS.gene55780:CDS | 20.0% |
| !! | TATAATGAGATGCAAAAATT+AGG | - | chr4.3:4809691-4809710 | MS.gene55780:CDS | 20.0% |
| !!! | TACTATAAGCTCTAAATTTT+CGG | - | chr4.3:4810593-4810612 | MS.gene55780:CDS | 20.0% |
| ! | AAAATTTAACGATGTGGATA+AGG | - | chr4.3:4809398-4809417 | MS.gene55780:CDS | 25.0% |
| ! | AAGACAAAGTAAAAAGGATT+TGG | - | chr4.3:4808906-4808925 | MS.gene55780:CDS | 25.0% |
| ! | AATATAAACACATCGATAGT+TGG | - | chr4.3:4810205-4810224 | MS.gene55780:CDS | 25.0% |
| ! | ACTTTGTCTTCAATTTCTAT+AGG | + | chr4.3:4808896-4808915 | None:intergenic | 25.0% |
| ! | CTTATTAAAGATGACAAACT+TGG | - | chr4.3:4808932-4808951 | MS.gene55780:CDS | 25.0% |
| ! | TTTCCAAGATAAGCTTAATA+AGG | - | chr4.3:4809591-4809610 | MS.gene55780:CDS | 25.0% |
| !! | TTTTTGCATCTCATTATACA+TGG | + | chr4.3:4809689-4809708 | None:intergenic | 25.0% |
| !!! | TCATTTCAAGTTCTGAAATT+TGG | + | chr4.3:4809051-4809070 | None:intergenic | 25.0% |
| AATTCATATCAAAGACTCGA+AGG | - | chr4.3:4811006-4811025 | MS.gene55780:CDS | 30.0% | |
| ACAGCAGAATTGTGATATAA+TGG | - | chr4.3:4808832-4808851 | MS.gene55780:CDS | 30.0% | |
| ATTCATATCAAAGACTCGAA+GGG | - | chr4.3:4811007-4811026 | MS.gene55780:CDS | 30.0% | |
| GACAGATAAAAACCATTTGT+TGG | - | chr4.3:4810719-4810738 | MS.gene55780:CDS | 30.0% | |
| TCAAATTCAAAGTCTGAAAG+AGG | - | chr4.3:4809327-4809346 | MS.gene55780:CDS | 30.0% | |
| TTGATAAAAGAGAAAGAGGA+GGG | - | chr4.3:4810891-4810910 | MS.gene55780:intron | 30.0% | |
| TTTGAGGATTGATTATCACA+GGG | - | chr4.3:4810962-4810981 | MS.gene55780:intron | 30.0% | |
| ! | AGATAAAAACCATTTGTTGG+AGG | - | chr4.3:4810722-4810741 | MS.gene55780:CDS | 30.0% |
| !! | GAAGTTGATAAAAGAGAAAG+AGG | - | chr4.3:4810887-4810906 | MS.gene55780:intron | 30.0% |
| !!! | ACAATTCAGCTAGTTTTTCT+CGG | + | chr4.3:4808970-4808989 | None:intergenic | 30.0% |
| AAGTAATGAAGCTTCAACTC+AGG | - | chr4.3:4809183-4809202 | MS.gene55780:CDS | 35.0% | |
| AATAAGAGAAGAACATGCAC+AGG | - | chr4.3:4810098-4810117 | MS.gene55780:CDS | 35.0% | |
| AATATCCGATGAGAGAGAAT+CGG | - | chr4.3:4809558-4809577 | MS.gene55780:CDS | 35.0% | |
| AATTCAAAGTCTGAAAGAGG+AGG | - | chr4.3:4809330-4809349 | MS.gene55780:CDS | 35.0% | |
| ACATGCTCAGAAAATTGAAC+TGG | - | chr4.3:4809141-4809160 | MS.gene55780:CDS | 35.0% | |
| ACTTCAGGATAAACTTTCCA+AGG | - | chr4.3:4809960-4809979 | MS.gene55780:CDS | 35.0% | |
| AGATAAGCTTAATAAGGCAG+AGG | - | chr4.3:4809597-4809616 | MS.gene55780:CDS | 35.0% | |
| ATATCACAATTCTGCTGTCA+TGG | + | chr4.3:4808830-4808849 | None:intergenic | 35.0% | |
| CAAATGAGGTGAATGTATTG+CGG | - | chr4.3:4809218-4809237 | MS.gene55780:CDS | 35.0% | |
| CACCTCATTTGTATTGCTTT+CGG | + | chr4.3:4809209-4809228 | None:intergenic | 35.0% | |
| CGAAGATGAAGAGCAAATAA+AGG | - | chr4.3:4809462-4809481 | MS.gene55780:CDS | 35.0% | |
| CGACAGAATAGCAAAATTAG+AGG | - | chr4.3:4809534-4809553 | MS.gene55780:CDS | 35.0% | |
| GAAAAAGGTTGAAAAGCTAG+AGG | - | chr4.3:4810782-4810801 | MS.gene55780:CDS | 35.0% | |
| GATAAAGAAAAGCAGCTTCA+GGG | - | chr4.3:4808760-4808779 | MS.gene55780:CDS | 35.0% | |
| GCAGAAAACAAAAGAAGAGT+TGG | - | chr4.3:4810059-4810078 | MS.gene55780:CDS | 35.0% | |
| GTGTCAACAGTATGATATCT+GGG | - | chr4.3:4810565-4810584 | MS.gene55780:CDS | 35.0% | |
| GTTTGAGGATTGATTATCAC+AGG | - | chr4.3:4810961-4810980 | MS.gene55780:intron | 35.0% | |
| TAGTTCCTCTTCTCTTTCTT+TGG | + | chr4.3:4809077-4809096 | None:intergenic | 35.0% | |
| TGAATTAGCCAACAAAAACC+TGG | - | chr4.3:4810149-4810168 | MS.gene55780:CDS | 35.0% | |
| TGAGAATGTCATGAATCTTG+AGG | - | chr4.3:4810401-4810420 | MS.gene55780:CDS | 35.0% | |
| TGATAAAGAAAAGCAGCTTC+AGG | - | chr4.3:4808759-4808778 | MS.gene55780:CDS | 35.0% | |
| TGTGTCAACAGTATGATATC+TGG | - | chr4.3:4810564-4810583 | MS.gene55780:CDS | 35.0% | |
| TTCATATCAAAGACTCGAAG+GGG | - | chr4.3:4811008-4811027 | MS.gene55780:CDS | 35.0% | |
| TTCATTGTCAACCATTGTGA+GGG | + | chr4.3:4810124-4810143 | None:intergenic | 35.0% | |
| TTTCATTGTCAACCATTGTG+AGG | + | chr4.3:4810125-4810144 | None:intergenic | 35.0% | |
| ! | CTGCCTTATTAAGCTTATCT+TGG | + | chr4.3:4809597-4809616 | None:intergenic | 35.0% |
| ! | CTTTTGAACCAATGTCTTCA+CGG | + | chr4.3:4810296-4810315 | None:intergenic | 35.0% |
| ! | CTTTTGCAGATTGTCAACTT+GGG | + | chr4.3:4810025-4810044 | None:intergenic | 35.0% |
| ! | GTTGATAAAAGAGAAAGAGG+AGG | - | chr4.3:4810890-4810909 | MS.gene55780:intron | 35.0% |
| ! | TCGTACACTCAGAATTTTCT+CGG | + | chr4.3:4809306-4809325 | None:intergenic | 35.0% |
| !! | AATCTTAATTTGCTCCTTGC+AGG | + | chr4.3:4809647-4809666 | None:intergenic | 35.0% |
| !! | CATTGGTTCAAAAGATCAGA+TGG | - | chr4.3:4810302-4810321 | MS.gene55780:CDS | 35.0% |
| !!! | CAATTCAGCTAGTTTTTCTC+GGG | + | chr4.3:4808969-4808988 | None:intergenic | 35.0% |
| !!! | CTCTTCTTTTGTTTTCTGCA+AGG | + | chr4.3:4810058-4810077 | None:intergenic | 35.0% |
| !!! | TGAAGCTGCTTTTCTTTATC+AGG | + | chr4.3:4808760-4808779 | None:intergenic | 35.0% |
| AAAAGAGACCTGGAAGAGAA+AGG | - | chr4.3:4810357-4810376 | MS.gene55780:CDS | 40.0% | |
| AAACATCTCATTCGAGCTTC+AGG | - | chr4.3:4810647-4810666 | MS.gene55780:CDS | 40.0% | |
| ACAACACCAGAAATCTGACT+TGG | - | chr4.3:4809258-4809277 | MS.gene55780:CDS | 40.0% | |
| AGTGTTCAACTCACAGTCTT+TGG | + | chr4.3:4809794-4809813 | None:intergenic | 40.0% | |
| ATGACTAATCGCTTGGATGT+TGG | + | chr4.3:4809488-4809507 | None:intergenic | 40.0% | |
| CATCTGCTATCATGATCATC+TGG | - | chr4.3:4809000-4809019 | MS.gene55780:CDS | 40.0% | |
| CCAACAAAAACCTGGATCTT+CGG | - | chr4.3:4810157-4810176 | MS.gene55780:CDS | 40.0% | |
| CGAAAAGCTGAAATTGGAGA+TGG | - | chr4.3:4809723-4809742 | MS.gene55780:CDS | 40.0% | |
| GAACTTCCAAGTCAGATTTC+TGG | + | chr4.3:4809267-4809286 | None:intergenic | 40.0% | |
| GAAGTCCAAAGAAAGAGAAG+AGG | - | chr4.3:4809069-4809088 | MS.gene55780:CDS | 40.0% | |
| GGTGCATAGTGTAATTGTGT+GGG | + | chr4.3:4808809-4808828 | None:intergenic | 40.0% | |
| GGTTGTAATATCTACCTGCA+AGG | - | chr4.3:4809630-4809649 | MS.gene55780:CDS | 40.0% | |
| GTCGATCGAAAAGCTGAAAT+TGG | - | chr4.3:4809717-4809736 | MS.gene55780:CDS | 40.0% | |
| TAAACTGACACAGGAGAAGT+TGG | - | chr4.3:4809873-4809892 | MS.gene55780:CDS | 40.0% | |
| TAACTCCGATTCTCTCTCAT+CGG | + | chr4.3:4809566-4809585 | None:intergenic | 40.0% | |
| TAAGGCAGAGGAAGAATGTT+TGG | - | chr4.3:4809609-4809628 | MS.gene55780:CDS | 40.0% | |
| TGCTATCATGATCATCTGGA+GGG | - | chr4.3:4809004-4809023 | MS.gene55780:CDS | 40.0% | |
| TGGTGCATAGTGTAATTGTG+TGG | + | chr4.3:4808810-4808829 | None:intergenic | 40.0% | |
| TTGCAGGGTAAAAAGGAAGA+GGG | - | chr4.3:4810747-4810766 | MS.gene55780:CDS | 40.0% | |
| ! | ATTTCAGCTTTTCGATCGAC+TGG | + | chr4.3:4809717-4809736 | None:intergenic | 40.0% |
| ! | ATTTGAGTTCTCTGCACTTC+AGG | - | chr4.3:4809945-4809964 | MS.gene55780:CDS | 40.0% |
| ! | CCAAGTTGACAATCTGCAAA+AGG | - | chr4.3:4810023-4810042 | MS.gene55780:CDS | 40.0% |
| ! | CCTTTTGCAGATTGTCAACT+TGG | + | chr4.3:4810026-4810045 | None:intergenic | 40.0% |
| ! | CGAATGAGATGTTTGAGATG+CGG | + | chr4.3:4810641-4810660 | None:intergenic | 40.0% |
| ! | TTCGGAGAATAGTGGAAGAA+CGG | - | chr4.3:4810175-4810194 | MS.gene55780:CDS | 40.0% |
| !! | AGAGGAAGAGAGCTTTAGAA+AGG | - | chr4.3:4810446-4810465 | MS.gene55780:CDS | 40.0% |
| !! | TTCTAAAGCTCTCTTCCTCT+TGG | + | chr4.3:4810446-4810465 | None:intergenic | 40.0% |
| !!! | CTCTTTTCAGGTCTTCAACT+TGG | + | chr4.3:4810344-4810363 | None:intergenic | 40.0% |
| AACGATGTGGATAAGGAGTC+TGG | - | chr4.3:4809405-4809424 | MS.gene55780:CDS | 45.0% | |
| AATCTGTCAGCGAGATGAGT+AGG | - | chr4.3:4810679-4810698 | MS.gene55780:CDS | 45.0% | |
| AGATCAGATGGCAGCTGATT+TGG | - | chr4.3:4810314-4810333 | MS.gene55780:CDS | 45.0% | |
| AGCGAGATGAGTAGGGAAAA+GGG | - | chr4.3:4810687-4810706 | MS.gene55780:CDS | 45.0% | |
| ATCTGTCAGCGAGATGAGTA+GGG | - | chr4.3:4810680-4810699 | MS.gene55780:CDS | 45.0% | |
| ATTGTCAACTTGGGCTGTGA+AGG | + | chr4.3:4810016-4810035 | None:intergenic | 45.0% | |
| CATAAGTCTCTCTTGCTCCA+TGG | + | chr4.3:4809368-4809387 | None:intergenic | 45.0% | |
| CATGGAGCAAGAGAGACTTA+TGG | - | chr4.3:4809366-4809385 | MS.gene55780:CDS | 45.0% | |
| CTGCTATCATGATCATCTGG+AGG | - | chr4.3:4809003-4809022 | MS.gene55780:CDS | 45.0% | |
| GAAGAGAAAGGAGATGAGGT+CGG | - | chr4.3:4810369-4810388 | MS.gene55780:CDS | 45.0% | |
| GAAGAGTTCCGTGAAGACAT+TGG | - | chr4.3:4810285-4810304 | MS.gene55780:CDS | 45.0% | |
| GATGACAAACTTGGCGAAGA+TGG | - | chr4.3:4808941-4808960 | MS.gene55780:CDS | 45.0% | |
| GCTATCATGATCATCTGGAG+GGG | - | chr4.3:4809005-4809024 | MS.gene55780:CDS | 45.0% | |
| GGAGCGCAATGACTATCTAA+AGG | - | chr4.3:4810983-4811002 | MS.gene55780:intron | 45.0% | |
| GGAGGTTGAGAGAAAAACCA+TGG | - | chr4.3:4809348-4809367 | MS.gene55780:CDS | 45.0% | |
| GGATAAACTTTCCAAGGCAG+AGG | - | chr4.3:4809966-4809985 | MS.gene55780:CDS | 45.0% | |
| GGCCGAAAGCAATACAAATG+AGG | - | chr4.3:4809204-4809223 | MS.gene55780:CDS | 45.0% | |
| GGGATCAACTCTGCAGAAAA+AGG | - | chr4.3:4810767-4810786 | MS.gene55780:CDS | 45.0% | |
| GGTTGAAAAGCTAGAGGCAA+AGG | - | chr4.3:4810788-4810807 | MS.gene55780:CDS | 45.0% | |
| GTGTCAGATGACTAATCGCT+TGG | + | chr4.3:4809495-4809514 | None:intergenic | 45.0% | |
| GTTCTTCAGCTACACTCTTC+TGG | + | chr4.3:4809762-4809781 | None:intergenic | 45.0% | |
| GTTGCAGGGTAAAAAGGAAG+AGG | - | chr4.3:4810746-4810765 | MS.gene55780:CDS | 45.0% | |
| TCACATCGCTAAACTGACAC+AGG | - | chr4.3:4809864-4809883 | MS.gene55780:CDS | 45.0% | |
| TCATCTGACACAGCAGAAGT+TGG | - | chr4.3:4809504-4809523 | MS.gene55780:CDS | 45.0% | |
| TGAAGACCTGAAAAGAGACC+TGG | - | chr4.3:4810347-4810366 | MS.gene55780:CDS | 45.0% | |
| ! | AAGGAGTCTGGAATTGGAGA+TGG | - | chr4.3:4809417-4809436 | MS.gene55780:CDS | 45.0% |
| ! | AGGAGTCTGGAATTGGAGAT+GGG | - | chr4.3:4809418-4809437 | MS.gene55780:CDS | 45.0% |
| ! | AGGGGCACAATTTAGAGTTG+AGG | - | chr4.3:4809023-4809042 | MS.gene55780:CDS | 45.0% |
| ! | CATTTGTTGGAGGAGTTGCA+GGG | - | chr4.3:4810732-4810751 | MS.gene55780:CDS | 45.0% |
| ! | CCGAAGATCCAGGTTTTTGT+TGG | + | chr4.3:4810160-4810179 | None:intergenic | 45.0% |
| ! | CTGCACGTTTAAGTTTGACC+TGG | + | chr4.3:4810242-4810261 | None:intergenic | 45.0% |
| ! | GGGGCACAATTTAGAGTTGA+GGG | - | chr4.3:4809024-4809043 | MS.gene55780:CDS | 45.0% |
| ! | GTGGATAAGGAGTCTGGAAT+TGG | - | chr4.3:4809411-4809430 | MS.gene55780:CDS | 45.0% |
| ! | TAGTTGGTACAATGACTGCC+AGG | - | chr4.3:4810221-4810240 | MS.gene55780:CDS | 45.0% |
| ! | TCGGAGAATAGTGGAAGAAC+GGG | - | chr4.3:4810176-4810195 | MS.gene55780:CDS | 45.0% |
| ! | TCTCTTCCAGGTCTCTTTTC+AGG | + | chr4.3:4810356-4810375 | None:intergenic | 45.0% |
| ! | TCTCTTCCTCTTGGTTTGAC+AGG | + | chr4.3:4810437-4810456 | None:intergenic | 45.0% |
| ! | TGACTTGGAAGTTCAGCTTG+TGG | - | chr4.3:4809273-4809292 | MS.gene55780:CDS | 45.0% |
| !! | GGAAGAGAGCTTTAGAAAGG+CGG | - | chr4.3:4810449-4810468 | MS.gene55780:CDS | 45.0% |
| !! | TTCAGAGAGCACTTGAAGAC+AGG | - | chr4.3:4810490-4810509 | MS.gene55780:CDS | 45.0% |
| AAGGCAGAGGAAGAGTCTTC+AGG | - | chr4.3:4809979-4809998 | MS.gene55780:CDS | 50.0% | |
| CAGCGAGATGAGTAGGGAAA+AGG | - | chr4.3:4810686-4810705 | MS.gene55780:CDS | 50.0% | |
| CAGCTTCAGGGAGCTAAAAC+AGG | - | chr4.3:4808772-4808791 | MS.gene55780:CDS | 50.0% | |
| CCACTATTCTCCGAAGATCC+AGG | + | chr4.3:4810170-4810189 | None:intergenic | 50.0% | |
| CCTCAAACAAAGCTGCCTGA+TGG | + | chr4.3:4810949-4810968 | None:intergenic | 50.0% | |
| CCTCATCTCCTTTCTCTTCC+AGG | + | chr4.3:4810368-4810387 | None:intergenic | 50.0% | |
| CCTGCAACTCCTCCAACAAA+TGG | + | chr4.3:4810734-4810753 | None:intergenic | 50.0% | |
| CCTGGAAGAGAAAGGAGATG+AGG | - | chr4.3:4810365-4810384 | MS.gene55780:CDS | 50.0% | |
| CCTGGATCTTCGGAGAATAG+TGG | - | chr4.3:4810167-4810186 | MS.gene55780:CDS | 50.0% | |
| GAACCTGGGAGAGGAAAAGA+GGG | - | chr4.3:4810920-4810939 | MS.gene55780:intron | 50.0% | |
| GAATGTATTGCGGCAGGAAG+TGG | - | chr4.3:4809228-4809247 | MS.gene55780:CDS | 50.0% | |
| GCGAGATGAGTAGGGAAAAG+GGG | - | chr4.3:4810688-4810707 | MS.gene55780:CDS | 50.0% | |
| GCTAGAGGCAAAGGCAAGAA+AGG | - | chr4.3:4810797-4810816 | MS.gene55780:CDS | 50.0% | |
| GCTTTGCCTGTCAAACCAAG+AGG | - | chr4.3:4810428-4810447 | MS.gene55780:CDS | 50.0% | |
| GGAGGAGTTGCAGGGTAAAA+AGG | - | chr4.3:4810740-4810759 | MS.gene55780:CDS | 50.0% | |
| TGAACCTGGGAGAGGAAAAG+AGG | - | chr4.3:4810919-4810938 | MS.gene55780:intron | 50.0% | |
| TGAAGACTCTTCCTCTGCCT+TGG | + | chr4.3:4809980-4809999 | None:intergenic | 50.0% | |
| TGAGGTGAATGTATTGCGGC+AGG | - | chr4.3:4809222-4809241 | MS.gene55780:CDS | 50.0% | |
| ! | AGAGGAGGGTATGTTGAACC+TGG | - | chr4.3:4810905-4810924 | MS.gene55780:intron | 50.0% |
| ! | CCATTTGTTGGAGGAGTTGC+AGG | - | chr4.3:4810731-4810750 | MS.gene55780:CDS | 50.0% |
| ! | GAGGAGGGTATGTTGAACCT+GGG | - | chr4.3:4810906-4810925 | MS.gene55780:intron | 50.0% |
| !! | CCATCAGGCAGCTTTGTTTG+AGG | - | chr4.3:4810946-4810965 | MS.gene55780:intron | 50.0% |
| ACATGCACAGGCCCTCACAA+TGG | - | chr4.3:4810110-4810129 | MS.gene55780:CDS | 55.0% | |
| AGGAAAAGAGGGAGGCCATC+AGG | - | chr4.3:4810931-4810950 | MS.gene55780:intron | 55.0% | |
| GACACAGGAGAAGTTGGAGC+TGG | - | chr4.3:4809879-4809898 | MS.gene55780:CDS | 55.0% | |
| GGGTATGTTGAACCTGGGAG+AGG | - | chr4.3:4810911-4810930 | MS.gene55780:intron | 55.0% | |
| AAGACTCGAAGGGGCCAGAG+AGG | - | chr4.3:4811017-4811036 | MS.gene55780:CDS | 60.0% | |
| CCTGGGAGAGGAAAAGAGGG+AGG | - | chr4.3:4810923-4810942 | MS.gene55780:intron | 60.0% | |
| ! | CCTCCCTCTTTTCCTCTCCC+AGG | + | chr4.3:4810926-4810945 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.3 | gene | 4808736 | 4811046 | 4808736 | ID=MS.gene55780 |
| chr4.3 | mRNA | 4808736 | 4811046 | 4808736 | ID=MS.gene55780.t1;Parent=MS.gene55780 |
| chr4.3 | exon | 4810989 | 4811046 | 4810989 | ID=MS.gene55780.t1.exon1;Parent=MS.gene55780.t1 |
| chr4.3 | CDS | 4810989 | 4811046 | 4810989 | ID=cds.MS.gene55780.t1;Parent=MS.gene55780.t1 |
| chr4.3 | exon | 4808736 | 4810882 | 4808736 | ID=MS.gene55780.t1.exon2;Parent=MS.gene55780.t1 |
| chr4.3 | CDS | 4808736 | 4810882 | 4808736 | ID=cds.MS.gene55780.t1;Parent=MS.gene55780.t1 |
| Gene Sequence |
| Protein sequence |
