Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene56186.t1 | XP_003598135.1 | 85 | 406 | 36 | 1 | 1 | 381 | 1 | 406 | 1.20E-143 | 519.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene56186.t1 | D9UBX6 | 44.4 | 90 | 49 | 1 | 20 | 109 | 16 | 104 | 8.2e-16 | 86.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene56186.t1 | G7IVB3 | 85.0 | 406 | 36 | 1 | 1 | 381 | 1 | 406 | 8.7e-144 | 519.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene058351 | MS.gene56186 | 0.995332 | 3.15E-215 | -1.69E-46 |
| MS.gene058909 | MS.gene56186 | 0.820741 | 5.84E-53 | -1.69E-46 |
| MS.gene058912 | MS.gene56186 | 0.817927 | 2.56E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene56186.t1 | MTR_3g007660 | 90.640 | 406 | 13 | 1 | 1 | 381 | 1 | 406 | 0.0 | 732 |
| MS.gene56186.t1 | MTR_8g046245 | 37.071 | 437 | 189 | 17 | 1 | 377 | 1 | 411 | 7.33e-50 | 173 |
| MS.gene56186.t1 | MTR_5g087470 | 36.735 | 98 | 60 | 2 | 11 | 108 | 4 | 99 | 2.50e-13 | 70.1 |
| MS.gene56186.t1 | MTR_5g087450 | 30.597 | 134 | 72 | 5 | 19 | 142 | 13 | 135 | 2.56e-11 | 63.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene56186.t1 | AT5G04890 | 44.944 | 89 | 48 | 1 | 20 | 108 | 16 | 103 | 2.64e-18 | 85.9 |
| MS.gene56186.t1 | AT2G27140 | 33.607 | 122 | 78 | 3 | 17 | 138 | 11 | 129 | 4.82e-14 | 71.2 |
| MS.gene56186.t1 | AT3G10680 | 31.731 | 104 | 70 | 1 | 4 | 107 | 7 | 109 | 3.62e-12 | 68.2 |
Find 70 sgRNAs with CRISPR-Local
Find 117 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGTTTCAACTTGTGATTTA+AGG | 0.135801 | 3.3:+3735457 | None:intergenic |
| AAAGCCTTTAGTTGCAAATA+TGG | 0.210552 | 3.3:-3734743 | MS.gene56186:CDS |
| GCTAGAAGAGATAAACTTAT+AGG | 0.216530 | 3.3:+3734678 | None:intergenic |
| CTTCAAGGCAAGTTTGAAAA+TGG | 0.223575 | 3.3:-3735516 | MS.gene56186:CDS |
| AAAGTTTCATACACAGGATT+TGG | 0.240469 | 3.3:+3736443 | None:intergenic |
| TTGGTTCCCTTGGGTGTTCT+AGG | 0.258214 | 3.3:+3735411 | None:intergenic |
| ACCTTCTTGTCTCTAATTAT+AGG | 0.272544 | 3.3:+3735351 | None:intergenic |
| CTCCATTAATCCTTAGTGTT+CGG | 0.276081 | 3.3:+3735619 | None:intergenic |
| CCCTTGGGTGTTCTAGGACT+TGG | 0.288101 | 3.3:+3735417 | None:intergenic |
| TCCATTAATCCTTAGTGTTC+GGG | 0.297124 | 3.3:+3735620 | None:intergenic |
| AAGTTTCATACACAGGATTT+GGG | 0.304860 | 3.3:+3736444 | None:intergenic |
| TCCCGAACACTAAGGATTAA+TGG | 0.308064 | 3.3:-3735621 | MS.gene56186:CDS |
| TTTCTTCACATTCACCTTCC+TGG | 0.317577 | 3.3:-3736380 | MS.gene56186:intron |
| CTCAAGTTGTCAAGAGAATA+GGG | 0.320215 | 3.3:-3734789 | MS.gene56186:CDS |
| TGGAGGCTTTGAAGGAATAT+TGG | 0.320768 | 3.3:+3735392 | None:intergenic |
| CAGGATATGATTGGTCAAAT+AGG | 0.333759 | 3.3:+3735565 | None:intergenic |
| TTTAGAAGGAAAAGAAATAA+AGG | 0.334192 | 3.3:-3734965 | MS.gene56186:CDS |
| TTTGACTTGGAAAAGTATCT+TGG | 0.347158 | 3.3:+3735259 | None:intergenic |
| TGAAGGAATATTGGTTCCCT+TGG | 0.376353 | 3.3:+3735401 | None:intergenic |
| AACAAGTTGAAGGAACAAAA+AGG | 0.378553 | 3.3:-3735285 | MS.gene56186:CDS |
| CCTTCAATTCTGACTTGGCT+TGG | 0.384214 | 3.3:+3736420 | None:intergenic |
| CCAAGCCAAGTCAGAATTGA+AGG | 0.386552 | 3.3:-3736420 | MS.gene56186:CDS |
| ACTCTAGTTGGAGGCTTTGA+AGG | 0.393913 | 3.3:+3735384 | None:intergenic |
| TGTTTCAACTTGTGATTTAA+GGG | 0.399467 | 3.3:+3735458 | None:intergenic |
| TCTCAAGTTGTCAAGAGAAT+AGG | 0.415456 | 3.3:-3734790 | MS.gene56186:CDS |
| AACCCTGTCACAATATTACT+TGG | 0.426130 | 3.3:+3735318 | None:intergenic |
| GAAGGAATATTGGTTCCCTT+GGG | 0.429823 | 3.3:+3735402 | None:intergenic |
| TGCTCCAAAAGATGCAAAGA+AGG | 0.439958 | 3.3:-3734908 | MS.gene56186:CDS |
| TCTCCAAGTAATATTGTGAC+AGG | 0.442725 | 3.3:-3735321 | MS.gene56186:CDS |
| GAGGATAAATATCAAATTTG+TGG | 0.447215 | 3.3:-3735649 | MS.gene56186:CDS |
| TTGACTTGGAAAAGTATCTT+GGG | 0.454151 | 3.3:+3735260 | None:intergenic |
| AAGCCTTTAGTTGCAAATAT+GGG | 0.459552 | 3.3:-3734742 | MS.gene56186:CDS |
| GGTTCTTCTAGTACTCTAGT+TGG | 0.460763 | 3.3:+3735372 | None:intergenic |
| AGGATAAATATCAAATTTGT+GGG | 0.471872 | 3.3:-3735648 | MS.gene56186:CDS |
| GCAAGAAAAGAGTCATCAAA+AGG | 0.472949 | 3.3:-3734943 | MS.gene56186:CDS |
| TAGACCTCAAAATGTTTATG+AGG | 0.473198 | 3.3:-3735193 | MS.gene56186:CDS |
| AAAAGATGCAAAGAAGGAAA+AGG | 0.477137 | 3.3:-3734902 | MS.gene56186:CDS |
| GCACCCATATTTGCAACTAA+AGG | 0.477234 | 3.3:+3734739 | None:intergenic |
| TGAGGTCTAGATTCTACAAA+GGG | 0.477686 | 3.3:+3735207 | None:intergenic |
| TCTTCTAGTACTCTAGTTGG+AGG | 0.480814 | 3.3:+3735375 | None:intergenic |
| TTTCTGGAACAGGATATGAT+TGG | 0.485095 | 3.3:+3735556 | None:intergenic |
| TCAACTTGTGATTTAAGGGA+TGG | 0.486917 | 3.3:+3735462 | None:intergenic |
| TGAAAAGTATACAAAAGAGA+AGG | 0.489401 | 3.3:-3734842 | MS.gene56186:CDS |
| TGTGAGGTGGAGAAACTTCA+AGG | 0.500541 | 3.3:-3735531 | MS.gene56186:CDS |
| AACTACTTGGTAGCAACAAA+TGG | 0.500941 | 3.3:-3735590 | MS.gene56186:CDS |
| ATTCTAGTAATTGTTGCACT+TGG | 0.506438 | 3.3:-3734712 | MS.gene56186:CDS |
| CACTAAGGATTAATGGAGAA+AGG | 0.511754 | 3.3:-3735614 | MS.gene56186:CDS |
| ACAATATTACTTGGAGATGA+AGG | 0.514944 | 3.3:+3735327 | None:intergenic |
| TTTCCAAGTCAAAGTCCTAA+GGG | 0.518428 | 3.3:-3735249 | MS.gene56186:CDS |
| AAATGACTTGAACAAGTTGA+AGG | 0.526624 | 3.3:-3735295 | MS.gene56186:CDS |
| CAACTTGTGATTTAAGGGAT+GGG | 0.528671 | 3.3:+3735463 | None:intergenic |
| ACCTATAATTAGAGACAAGA+AGG | 0.529275 | 3.3:-3735352 | MS.gene56186:CDS |
| AATGGAGAAAGGCAACTACT+TGG | 0.540238 | 3.3:-3735603 | MS.gene56186:CDS |
| TGGGACTCTCCCGAACACTA+AGG | 0.543028 | 3.3:-3735629 | MS.gene56186:CDS |
| CAAAGCAAAGAGGTATAAGA+AGG | 0.543303 | 3.3:-3734866 | MS.gene56186:CDS |
| GAAGGGAATCTTCAAAGAAG+TGG | 0.546448 | 3.3:-3734824 | MS.gene56186:CDS |
| TTTCCCTTAGGACTTTGACT+TGG | 0.546496 | 3.3:+3735246 | None:intergenic |
| GAAAAGTATACAAAAGAGAA+GGG | 0.549687 | 3.3:-3734841 | MS.gene56186:CDS |
| GCTTGGAAAGTTTCATACAC+AGG | 0.566062 | 3.3:+3736437 | None:intergenic |
| TCATACACAGGATTTGGGGA+AGG | 0.574199 | 3.3:+3736449 | None:intergenic |
| TTGAGGTCTAGATTCTACAA+AGG | 0.598222 | 3.3:+3735206 | None:intergenic |
| GCCAAGTCCTAGAACACCCA+AGG | 0.612732 | 3.3:-3735418 | MS.gene56186:CDS |
| TCAAGTTGTCAAGAGAATAG+GGG | 0.639104 | 3.3:-3734788 | MS.gene56186:CDS |
| CTACAATTGACAAAGCAAAG+AGG | 0.640484 | 3.3:-3734876 | MS.gene56186:CDS |
| CTCCAAGTAATATTGTGACA+GGG | 0.641452 | 3.3:-3735320 | MS.gene56186:CDS |
| AGTTTCATACACAGGATTTG+GGG | 0.655568 | 3.3:+3736445 | None:intergenic |
| GTTGTCAAGAGAATAGGGGA+AGG | 0.658130 | 3.3:-3734784 | MS.gene56186:CDS |
| TGTTCCAGAAAATTGTGAGG+TGG | 0.660896 | 3.3:-3735544 | MS.gene56186:CDS |
| TCCTGTTCCAGAAAATTGTG+AGG | 0.672952 | 3.3:-3735547 | MS.gene56186:CDS |
| CCAAGTCCTAGAACACCCAA+GGG | 0.690447 | 3.3:-3735417 | MS.gene56186:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTATTTTACTTATTAGTCTT+TGG | + | chr3.3:3734860-3734879 | None:intergenic | 15.0% |
| !! | AAAAAATTCAAGAGGAAAAT+AGG | - | chr3.3:3736029-3736048 | MS.gene56186:intron | 20.0% |
| !! | AGGATAAATATCAAATTTGT+GGG | - | chr3.3:3735509-3735528 | MS.gene56186:CDS | 20.0% |
| !! | CTTTAAATTCTACCTAATAT+TGG | - | chr3.3:3734828-3734847 | MS.gene56186:CDS | 20.0% |
| !! | TTTAGAAGGAAAAGAAATAA+AGG | - | chr3.3:3736192-3736211 | MS.gene56186:intron | 20.0% |
| !!! | TTTGATTTGTTTTTTGTTCT+AGG | - | chr3.3:3734893-3734912 | MS.gene56186:CDS | 20.0% |
| ! | AAATGTGATCCTTTCTAATA+TGG | + | chr3.3:3734931-3734950 | None:intergenic | 25.0% |
| ! | AAATTCTACCTAATATTGGA+GGG | - | chr3.3:3734832-3734851 | MS.gene56186:CDS | 25.0% |
| ! | AATTAAAAAACAATTGCACG+AGG | - | chr3.3:3736072-3736091 | MS.gene56186:intron | 25.0% |
| ! | GAGGATAAATATCAAATTTG+TGG | - | chr3.3:3735508-3735527 | MS.gene56186:CDS | 25.0% |
| ! | TAAATTCTACCTAATATTGG+AGG | - | chr3.3:3734831-3734850 | MS.gene56186:CDS | 25.0% |
| ! | TGTTTCAACTTGTGATTTAA+GGG | + | chr3.3:3735702-3735721 | None:intergenic | 25.0% |
| ! | TTGTTTCAACTTGTGATTTA+AGG | + | chr3.3:3735703-3735722 | None:intergenic | 25.0% |
| !! | CTTTTACAAAAAGGATCAAA+GGG | + | chr3.3:3735308-3735327 | None:intergenic | 25.0% |
| !! | GAAAAGTATACAAAAGAGAA+GGG | - | chr3.3:3736316-3736335 | MS.gene56186:intron | 25.0% |
| !! | TCTTTTACAAAAAGGATCAA+AGG | + | chr3.3:3735309-3735328 | None:intergenic | 25.0% |
| !! | TGAAAAGTATACAAAAGAGA+AGG | - | chr3.3:3736315-3736334 | MS.gene56186:intron | 25.0% |
| !! | TGATGATGAAAAAATTCAAG+AGG | - | chr3.3:3736021-3736040 | MS.gene56186:intron | 25.0% |
| !! | TTTTCCTCATAAACATTTTG+AGG | + | chr3.3:3735971-3735990 | None:intergenic | 25.0% |
| AAAAACAAAAAATACGCACC+AGG | + | chr3.3:3734798-3734817 | None:intergenic | 30.0% | |
| AAAAGATGCAAAGAAGGAAA+AGG | - | chr3.3:3736255-3736274 | MS.gene56186:intron | 30.0% | |
| AAAGCCTTTAGTTGCAAATA+TGG | - | chr3.3:3736414-3736433 | MS.gene56186:CDS | 30.0% | |
| AAAGTTTCATACACAGGATT+TGG | + | chr3.3:3734717-3734736 | None:intergenic | 30.0% | |
| AAGCCTTTAGTTGCAAATAT+GGG | - | chr3.3:3736415-3736434 | MS.gene56186:CDS | 30.0% | |
| AAGTTTCATACACAGGATTT+GGG | + | chr3.3:3734716-3734735 | None:intergenic | 30.0% | |
| AATTCTACCTAATATTGGAG+GGG | - | chr3.3:3734833-3734852 | MS.gene56186:CDS | 30.0% | |
| ACAATATTACTTGGAGATGA+AGG | + | chr3.3:3735833-3735852 | None:intergenic | 30.0% | |
| ACCTATAATTAGAGACAAGA+AGG | - | chr3.3:3735805-3735824 | MS.gene56186:intron | 30.0% | |
| ACCTTCTTGTCTCTAATTAT+AGG | + | chr3.3:3735809-3735828 | None:intergenic | 30.0% | |
| ATTCTAGTAATTGTTGCACT+TGG | - | chr3.3:3736445-3736464 | MS.gene56186:CDS | 30.0% | |
| GCTAGAAGAGATAAACTTAT+AGG | + | chr3.3:3736482-3736501 | None:intergenic | 30.0% | |
| TAGACCTCAAAATGTTTATG+AGG | - | chr3.3:3735964-3735983 | MS.gene56186:intron | 30.0% | |
| ! | AAAGCTTTCAATTTTCCCTT+AGG | + | chr3.3:3735926-3735945 | None:intergenic | 30.0% |
| ! | AAATGACTTGAACAAGTTGA+AGG | - | chr3.3:3735862-3735881 | MS.gene56186:intron | 30.0% |
| ! | AACAAGTTGAAGGAACAAAA+AGG | - | chr3.3:3735872-3735891 | MS.gene56186:intron | 30.0% |
| ! | ATTGCTTGAGATTTTGCTTT+TGG | + | chr3.3:3736001-3736020 | None:intergenic | 30.0% |
| ! | ATTTTCCTTCAATTCTGACT+TGG | + | chr3.3:3734745-3734764 | None:intergenic | 30.0% |
| ! | CCTACTTGTCTTTTACAAAA+AGG | + | chr3.3:3735317-3735336 | None:intergenic | 30.0% |
| ! | CCTTTTTGTAAAAGACAAGT+AGG | - | chr3.3:3735314-3735333 | MS.gene56186:CDS | 30.0% |
| ! | TTTTCCTTCTTTGCATCTTT+TGG | + | chr3.3:3736256-3736275 | None:intergenic | 30.0% |
| !! | GATCACAATACGTTTTTAGA+AGG | - | chr3.3:3736178-3736197 | MS.gene56186:intron | 30.0% |
| !! | TGATTTGGTTGTATTGACTT+GGG | - | chr3.3:3735061-3735080 | MS.gene56186:CDS | 30.0% |
| !! | TGTTCTGCAAGGTTTTATAA+AGG | - | chr3.3:3735484-3735503 | MS.gene56186:CDS | 30.0% |
| !! | TTGACTTGGAAAAGTATCTT+GGG | + | chr3.3:3735900-3735919 | None:intergenic | 30.0% |
| !! | TTGATTTGGTTGTATTGACT+TGG | - | chr3.3:3735060-3735079 | MS.gene56186:CDS | 30.0% |
| !! | TTTGACTTGGAAAAGTATCT+TGG | + | chr3.3:3735901-3735920 | None:intergenic | 30.0% |
| !!! | ACTTGGCACAATTTTTTCTT+TGG | + | chr3.3:3735726-3735745 | None:intergenic | 30.0% |
| AACCCTGTCACAATATTACT+TGG | + | chr3.3:3735842-3735861 | None:intergenic | 35.0% | |
| AGTTTCATACACAGGATTTG+GGG | + | chr3.3:3734715-3734734 | None:intergenic | 35.0% | |
| ATTCTCCTCGATGTCAATTT+GGG | - | chr3.3:3735123-3735142 | MS.gene56186:CDS | 35.0% | |
| CAACTTGTGATTTAAGGGAT+GGG | + | chr3.3:3735697-3735716 | None:intergenic | 35.0% | |
| CACTAAGGATTAATGGAGAA+AGG | - | chr3.3:3735543-3735562 | MS.gene56186:CDS | 35.0% | |
| CTACAATTGACAAAGCAAAG+AGG | - | chr3.3:3736281-3736300 | MS.gene56186:intron | 35.0% | |
| CTCCAAGTAATATTGTGACA+GGG | - | chr3.3:3735837-3735856 | MS.gene56186:intron | 35.0% | |
| CTCCATTAATCCTTAGTGTT+CGG | + | chr3.3:3735541-3735560 | None:intergenic | 35.0% | |
| CTTCAAGGCAAGTTTGAAAA+TGG | - | chr3.3:3735641-3735660 | MS.gene56186:CDS | 35.0% | |
| GCAAGAAAAGAGTCATCAAA+AGG | - | chr3.3:3736214-3736233 | MS.gene56186:intron | 35.0% | |
| TCAACTTGTGATTTAAGGGA+TGG | + | chr3.3:3735698-3735717 | None:intergenic | 35.0% | |
| TCCATTAATCCTTAGTGTTC+GGG | + | chr3.3:3735540-3735559 | None:intergenic | 35.0% | |
| TCTCCAAGTAATATTGTGAC+AGG | - | chr3.3:3735836-3735855 | MS.gene56186:intron | 35.0% | |
| TGAGGTCTAGATTCTACAAA+GGG | + | chr3.3:3735953-3735972 | None:intergenic | 35.0% | |
| TGTCTTAAGAAAACCCACTT+GGG | - | chr3.3:3735037-3735056 | MS.gene56186:CDS | 35.0% | |
| TGTGATCCTTTCTAATATGG+AGG | + | chr3.3:3734928-3734947 | None:intergenic | 35.0% | |
| TTGAGGTCTAGATTCTACAA+AGG | + | chr3.3:3735954-3735973 | None:intergenic | 35.0% | |
| TTGTCTTAAGAAAACCCACT+TGG | - | chr3.3:3735036-3735055 | MS.gene56186:CDS | 35.0% | |
| TTTCCAAGTCAAAGTCCTAA+GGG | - | chr3.3:3735908-3735927 | MS.gene56186:intron | 35.0% | |
| ! | AACTACTTGGTAGCAACAAA+TGG | - | chr3.3:3735567-3735586 | MS.gene56186:CDS | 35.0% |
| ! | CAAAGCAAAGAGGTATAAGA+AGG | - | chr3.3:3736291-3736310 | MS.gene56186:intron | 35.0% |
| ! | CAGGATATGATTGGTCAAAT+AGG | + | chr3.3:3735595-3735614 | None:intergenic | 35.0% |
| ! | CTCAAGTTGTCAAGAGAATA+GGG | - | chr3.3:3736368-3736387 | MS.gene56186:intron | 35.0% |
| ! | TCAAGTTGTCAAGAGAATAG+GGG | - | chr3.3:3736369-3736388 | MS.gene56186:intron | 35.0% |
| ! | TCTCAAGTTGTCAAGAGAAT+AGG | - | chr3.3:3736367-3736386 | MS.gene56186:intron | 35.0% |
| ! | TTTTCCAAGTCAAAGTCCTA+AGG | - | chr3.3:3735907-3735926 | MS.gene56186:intron | 35.0% |
| !! | TGCAAGGTTTTATAAAGGAG+AGG | - | chr3.3:3735489-3735508 | MS.gene56186:CDS | 35.0% |
| !! | TTTCTGGAACAGGATATGAT+TGG | + | chr3.3:3735604-3735623 | None:intergenic | 35.0% |
| !!! | TTAAGGGATGGGAACTTTTT+TGG | + | chr3.3:3735686-3735705 | None:intergenic | 35.0% |
| AATGGAGAAAGGCAACTACT+TGG | - | chr3.3:3735554-3735573 | MS.gene56186:CDS | 40.0% | |
| ACAAAAAATACGCACCAGGA+AGG | + | chr3.3:3734794-3734813 | None:intergenic | 40.0% | |
| ACAACCAAATCAACCCAAGT+GGG | + | chr3.3:3735053-3735072 | None:intergenic | 40.0% | |
| GAAGGGAATCTTCAAAGAAG+TGG | - | chr3.3:3736333-3736352 | MS.gene56186:intron | 40.0% | |
| GATTCTCCTCGATGTCAATT+TGG | - | chr3.3:3735122-3735141 | MS.gene56186:CDS | 40.0% | |
| GCACCCATATTTGCAACTAA+AGG | + | chr3.3:3736421-3736440 | None:intergenic | 40.0% | |
| GCTTGGAAAGTTTCATACAC+AGG | + | chr3.3:3734723-3734742 | None:intergenic | 40.0% | |
| GGTTCTTCTAGTACTCTAGT+TGG | + | chr3.3:3735788-3735807 | None:intergenic | 40.0% | |
| TACAACCAAATCAACCCAAG+TGG | + | chr3.3:3735054-3735073 | None:intergenic | 40.0% | |
| TATCACCCAAATTGACATCG+AGG | + | chr3.3:3735131-3735150 | None:intergenic | 40.0% | |
| TCCCGAACACTAAGGATTAA+TGG | - | chr3.3:3735536-3735555 | MS.gene56186:CDS | 40.0% | |
| TCCTGTTCCAGAAAATTGTG+AGG | - | chr3.3:3735610-3735629 | MS.gene56186:CDS | 40.0% | |
| TCTTCTAGTACTCTAGTTGG+AGG | + | chr3.3:3735785-3735804 | None:intergenic | 40.0% | |
| TGCACTCCTCCATATTAGAA+AGG | - | chr3.3:3734919-3734938 | MS.gene56186:CDS | 40.0% | |
| TGCTCCAAAAGATGCAAAGA+AGG | - | chr3.3:3736249-3736268 | MS.gene56186:intron | 40.0% | |
| TGTTCCAGAAAATTGTGAGG+TGG | - | chr3.3:3735613-3735632 | MS.gene56186:CDS | 40.0% | |
| TTTCCCTTAGGACTTTGACT+TGG | + | chr3.3:3735914-3735933 | None:intergenic | 40.0% | |
| TTTCTTCACATTCACCTTCC+TGG | - | chr3.3:3734777-3734796 | MS.gene56186:CDS | 40.0% | |
| ! | TGAGAGTGTACTCATTCTCA+AGG | - | chr3.3:3735089-3735108 | MS.gene56186:CDS | 40.0% |
| ! | TTCTCCACCTCACAATTTTC+TGG | + | chr3.3:3735620-3735639 | None:intergenic | 40.0% |
| !! | AAAACCCACTTGGGTTGATT+TGG | - | chr3.3:3735046-3735065 | MS.gene56186:CDS | 40.0% |
| !! | GAAGGAATATTGGTTCCCTT+GGG | + | chr3.3:3735758-3735777 | None:intergenic | 40.0% |
| !! | TGAAGGAATATTGGTTCCCT+TGG | + | chr3.3:3735759-3735778 | None:intergenic | 40.0% |
| !! | TGGAGGCTTTGAAGGAATAT+TGG | + | chr3.3:3735768-3735787 | None:intergenic | 40.0% |
| !!! | ACCTCACAATTTTCTGGAAC+AGG | + | chr3.3:3735614-3735633 | None:intergenic | 40.0% |
| !!! | GAAGGTTTTGTTCTAGAGGT+AGG | + | chr3.3:3734693-3734712 | None:intergenic | 40.0% |
| CCAAGCCAAGTCAGAATTGA+AGG | - | chr3.3:3734737-3734756 | MS.gene56186:CDS | 45.0% | |
| CTTCTCTCTCATGTTCTGCA+AGG | - | chr3.3:3735473-3735492 | MS.gene56186:CDS | 45.0% | |
| CTTTGGACCCCTCCAATATT+AGG | + | chr3.3:3734843-3734862 | None:intergenic | 45.0% | |
| GAGAATGAGTACACTCTCAC+AGG | + | chr3.3:3735088-3735107 | None:intergenic | 45.0% | |
| GTTGTCAAGAGAATAGGGGA+AGG | - | chr3.3:3736373-3736392 | MS.gene56186:intron | 45.0% | |
| TCATACACAGGATTTGGGGA+AGG | + | chr3.3:3734711-3734730 | None:intergenic | 45.0% | |
| TGTGAGGTGGAGAAACTTCA+AGG | - | chr3.3:3735626-3735645 | MS.gene56186:CDS | 45.0% | |
| ! | ACTCTAGTTGGAGGCTTTGA+AGG | + | chr3.3:3735776-3735795 | None:intergenic | 45.0% |
| !! | CCTTCAATTCTGACTTGGCT+TGG | + | chr3.3:3734740-3734759 | None:intergenic | 45.0% |
| !!! | TGGGGAAGGTTTTGTTCTAG+AGG | + | chr3.3:3734697-3734716 | None:intergenic | 45.0% |
| CCAAGTCCTAGAACACCCAA+GGG | - | chr3.3:3735740-3735759 | MS.gene56186:intron | 50.0% | |
| TTGGTTCCCTTGGGTGTTCT+AGG | + | chr3.3:3735749-3735768 | None:intergenic | 50.0% | |
| GCCAAGTCCTAGAACACCCA+AGG | - | chr3.3:3735739-3735758 | MS.gene56186:intron | 55.0% | |
| TGGGACTCTCCCGAACACTA+AGG | - | chr3.3:3735528-3735547 | MS.gene56186:CDS | 55.0% | |
| !! | CCCTTGGGTGTTCTAGGACT+TGG | + | chr3.3:3735743-3735762 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 3734669 | 3736510 | 3734669 | ID=MS.gene56186 |
| chr3.3 | mRNA | 3734669 | 3736510 | 3734669 | ID=MS.gene56186.t1;Parent=MS.gene56186 |
| chr3.3 | exon | 3736381 | 3736510 | 3736381 | ID=MS.gene56186.t1.exon1;Parent=MS.gene56186.t1 |
| chr3.3 | CDS | 3736381 | 3736510 | 3736381 | ID=cds.MS.gene56186.t1;Parent=MS.gene56186.t1 |
| chr3.3 | exon | 3734669 | 3735684 | 3734669 | ID=MS.gene56186.t1.exon2;Parent=MS.gene56186.t1 |
| chr3.3 | CDS | 3734669 | 3735684 | 3734669 | ID=cds.MS.gene56186.t1;Parent=MS.gene56186.t1 |
| Gene Sequence |
| Protein sequence |
