Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene058351.t1 | XP_003598135.1 | 85 | 406 | 36 | 1 | 1 | 381 | 1 | 406 | 1.20E-143 | 519.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene058351.t1 | D9UBX6 | 44.4 | 90 | 49 | 1 | 20 | 109 | 16 | 104 | 8.2e-16 | 86.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene058351.t1 | G7IVB3 | 85.0 | 406 | 36 | 1 | 1 | 381 | 1 | 406 | 8.7e-144 | 519.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene058351 | MS.gene058909 | 0.821978 | 3.03E-53 | -1.69E-46 |
| MS.gene058351 | MS.gene058912 | 0.817973 | 2.50E-52 | -1.69E-46 |
| MS.gene058351 | MS.gene066929 | 0.800892 | 1.16E-48 | -1.69E-46 |
| MS.gene058351 | MS.gene067270 | 0.807331 | 5.33E-50 | -1.69E-46 |
| MS.gene058351 | MS.gene067271 | 0.80558 | 1.25E-49 | -1.69E-46 |
| MS.gene058351 | MS.gene37852 | 0.810787 | 9.69E-51 | -1.69E-46 |
| MS.gene058351 | MS.gene39845 | 0.801955 | 7.05E-49 | -1.69E-46 |
| MS.gene058351 | MS.gene47958 | 0.82249 | 2.30E-53 | -1.69E-46 |
| MS.gene058351 | MS.gene47960 | 0.816735 | 4.74E-52 | -1.69E-46 |
| MS.gene058351 | MS.gene47963 | 0.813086 | 3.06E-51 | -1.69E-46 |
| MS.gene058351 | MS.gene51531 | 0.810289 | 1.24E-50 | -1.69E-46 |
| MS.gene058351 | MS.gene56186 | 0.995332 | 3.15E-215 | -1.69E-46 |
| MS.gene058351 | MS.gene59879 | 0.837891 | 3.98E-57 | -1.69E-46 |
| MS.gene058351 | MS.gene61572 | 0.804191 | 2.43E-49 | -1.69E-46 |
| MS.gene058351 | MS.gene62780 | 0.803717 | 3.05E-49 | -1.69E-46 |
| MS.gene058351 | MS.gene71459 | 0.80366 | 3.14E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene058351.t1 | MTR_3g007660 | 90.640 | 406 | 13 | 1 | 1 | 381 | 1 | 406 | 0.0 | 732 |
| MS.gene058351.t1 | MTR_8g046245 | 37.071 | 437 | 189 | 17 | 1 | 377 | 1 | 411 | 7.33e-50 | 173 |
| MS.gene058351.t1 | MTR_5g087470 | 36.735 | 98 | 60 | 2 | 11 | 108 | 4 | 99 | 2.50e-13 | 70.1 |
| MS.gene058351.t1 | MTR_5g087450 | 30.597 | 134 | 72 | 5 | 19 | 142 | 13 | 135 | 2.56e-11 | 63.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene058351.t1 | AT5G04890 | 44.944 | 89 | 48 | 1 | 20 | 108 | 16 | 103 | 2.64e-18 | 85.9 |
| MS.gene058351.t1 | AT2G27140 | 33.607 | 122 | 78 | 3 | 17 | 138 | 11 | 129 | 4.82e-14 | 71.2 |
| MS.gene058351.t1 | AT3G10680 | 31.731 | 104 | 70 | 1 | 4 | 107 | 7 | 109 | 3.62e-12 | 68.2 |
Find 70 sgRNAs with CRISPR-Local
Find 117 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGTTTCAACTTGTGATTTA+AGG | 0.135801 | 3.2:+2279193 | None:intergenic |
| AAAGCCTTTAGTTGCAAATA+TGG | 0.210552 | 3.2:-2278479 | MS.gene058351:CDS |
| GCTAGAAGAGATAAACTTAT+AGG | 0.216530 | 3.2:+2278414 | None:intergenic |
| CTTCAAGGCAAGTTTGAAAA+TGG | 0.223575 | 3.2:-2279252 | MS.gene058351:CDS |
| AAAGTTTCATACACAGGATT+TGG | 0.240469 | 3.2:+2280179 | None:intergenic |
| TTGGTTCCCTTGGGTGTTCT+AGG | 0.258214 | 3.2:+2279147 | None:intergenic |
| ACCTTCTTGTCTCTAATTAT+AGG | 0.272544 | 3.2:+2279087 | None:intergenic |
| CTCCATTAATCCTTAGTGTT+CGG | 0.276081 | 3.2:+2279355 | None:intergenic |
| CCCTTGGGTGTTCTAGGACT+TGG | 0.288101 | 3.2:+2279153 | None:intergenic |
| TCCATTAATCCTTAGTGTTC+GGG | 0.297124 | 3.2:+2279356 | None:intergenic |
| AAGTTTCATACACAGGATTT+GGG | 0.304860 | 3.2:+2280180 | None:intergenic |
| TCCCGAACACTAAGGATTAA+TGG | 0.308064 | 3.2:-2279357 | MS.gene058351:CDS |
| TTTCTTCACATTCACCTTCC+TGG | 0.317577 | 3.2:-2280116 | MS.gene058351:intron |
| CTCAAGTTGTCAAGAGAATA+GGG | 0.320215 | 3.2:-2278525 | MS.gene058351:CDS |
| TGGAGGCTTTGAAGGAATAT+TGG | 0.320768 | 3.2:+2279128 | None:intergenic |
| CAGGATATGATTGGTCAAAT+AGG | 0.333759 | 3.2:+2279301 | None:intergenic |
| TTTAGAAGGAAAAGAAATAA+AGG | 0.334192 | 3.2:-2278701 | MS.gene058351:CDS |
| TTTGACTTGGAAAAGTATCT+TGG | 0.347158 | 3.2:+2278995 | None:intergenic |
| TGAAGGAATATTGGTTCCCT+TGG | 0.376353 | 3.2:+2279137 | None:intergenic |
| AACAAGTTGAAGGAACAAAA+AGG | 0.378553 | 3.2:-2279021 | MS.gene058351:CDS |
| CCTTCAATTCTGACTTGGCT+TGG | 0.384214 | 3.2:+2280156 | None:intergenic |
| CCAAGCCAAGTCAGAATTGA+AGG | 0.386552 | 3.2:-2280156 | MS.gene058351:CDS |
| ACTCTAGTTGGAGGCTTTGA+AGG | 0.393913 | 3.2:+2279120 | None:intergenic |
| TGTTTCAACTTGTGATTTAA+GGG | 0.399467 | 3.2:+2279194 | None:intergenic |
| TCTCAAGTTGTCAAGAGAAT+AGG | 0.415456 | 3.2:-2278526 | MS.gene058351:CDS |
| AACCCTGTCACAATATTACT+TGG | 0.426130 | 3.2:+2279054 | None:intergenic |
| GAAGGAATATTGGTTCCCTT+GGG | 0.429823 | 3.2:+2279138 | None:intergenic |
| TGCTCCAAAAGATGCAAAGA+AGG | 0.439958 | 3.2:-2278644 | MS.gene058351:CDS |
| TCTCCAAGTAATATTGTGAC+AGG | 0.442725 | 3.2:-2279057 | MS.gene058351:CDS |
| GAGGATAAATATCAAATTTG+TGG | 0.447215 | 3.2:-2279385 | MS.gene058351:CDS |
| TTGACTTGGAAAAGTATCTT+GGG | 0.454151 | 3.2:+2278996 | None:intergenic |
| AAGCCTTTAGTTGCAAATAT+GGG | 0.459552 | 3.2:-2278478 | MS.gene058351:CDS |
| GGTTCTTCTAGTACTCTAGT+TGG | 0.460763 | 3.2:+2279108 | None:intergenic |
| AGGATAAATATCAAATTTGT+GGG | 0.471872 | 3.2:-2279384 | MS.gene058351:CDS |
| GCAAGAAAAGAGTCATCAAA+AGG | 0.472949 | 3.2:-2278679 | MS.gene058351:CDS |
| TAGACCTCAAAATGTTTATG+AGG | 0.473198 | 3.2:-2278929 | MS.gene058351:CDS |
| AAAAGATGCAAAGAAGGAAA+AGG | 0.477137 | 3.2:-2278638 | MS.gene058351:CDS |
| GCACCCATATTTGCAACTAA+AGG | 0.477234 | 3.2:+2278475 | None:intergenic |
| TGAGGTCTAGATTCTACAAA+GGG | 0.477686 | 3.2:+2278943 | None:intergenic |
| TCTTCTAGTACTCTAGTTGG+AGG | 0.480814 | 3.2:+2279111 | None:intergenic |
| TTTCTGGAACAGGATATGAT+TGG | 0.485095 | 3.2:+2279292 | None:intergenic |
| TCAACTTGTGATTTAAGGGA+TGG | 0.486917 | 3.2:+2279198 | None:intergenic |
| TGAAAAGTATACAAAAGAGA+AGG | 0.489401 | 3.2:-2278578 | MS.gene058351:CDS |
| TGTGAGGTGGAGAAACTTCA+AGG | 0.500541 | 3.2:-2279267 | MS.gene058351:CDS |
| AACTACTTGGTAGCAACAAA+TGG | 0.500941 | 3.2:-2279326 | MS.gene058351:CDS |
| ATTCTAGTAATTGTTGCACT+TGG | 0.506438 | 3.2:-2278448 | MS.gene058351:CDS |
| CACTAAGGATTAATGGAGAA+AGG | 0.511754 | 3.2:-2279350 | MS.gene058351:CDS |
| ACAATATTACTTGGAGATGA+AGG | 0.514944 | 3.2:+2279063 | None:intergenic |
| TTTCCAAGTCAAAGTCCTAA+GGG | 0.518428 | 3.2:-2278985 | MS.gene058351:CDS |
| AAATGACTTGAACAAGTTGA+AGG | 0.526624 | 3.2:-2279031 | MS.gene058351:CDS |
| CAACTTGTGATTTAAGGGAT+GGG | 0.528671 | 3.2:+2279199 | None:intergenic |
| ACCTATAATTAGAGACAAGA+AGG | 0.529275 | 3.2:-2279088 | MS.gene058351:CDS |
| AATGGAGAAAGGCAACTACT+TGG | 0.540238 | 3.2:-2279339 | MS.gene058351:CDS |
| TGGGACTCTCCCGAACACTA+AGG | 0.543028 | 3.2:-2279365 | MS.gene058351:CDS |
| CAAAGCAAAGAGGTATAAGA+AGG | 0.543303 | 3.2:-2278602 | MS.gene058351:CDS |
| GAAGGGAATCTTCAAAGAAG+TGG | 0.546448 | 3.2:-2278560 | MS.gene058351:CDS |
| TTTCCCTTAGGACTTTGACT+TGG | 0.546496 | 3.2:+2278982 | None:intergenic |
| GAAAAGTATACAAAAGAGAA+GGG | 0.549687 | 3.2:-2278577 | MS.gene058351:CDS |
| GCTTGGAAAGTTTCATACAC+AGG | 0.566062 | 3.2:+2280173 | None:intergenic |
| TCATACACAGGATTTGGGGA+AGG | 0.574199 | 3.2:+2280185 | None:intergenic |
| TTGAGGTCTAGATTCTACAA+AGG | 0.598222 | 3.2:+2278942 | None:intergenic |
| GCCAAGTCCTAGAACACCCA+AGG | 0.612732 | 3.2:-2279154 | MS.gene058351:CDS |
| TCAAGTTGTCAAGAGAATAG+GGG | 0.639104 | 3.2:-2278524 | MS.gene058351:CDS |
| CTACAATTGACAAAGCAAAG+AGG | 0.640484 | 3.2:-2278612 | MS.gene058351:CDS |
| CTCCAAGTAATATTGTGACA+GGG | 0.641452 | 3.2:-2279056 | MS.gene058351:CDS |
| AGTTTCATACACAGGATTTG+GGG | 0.655568 | 3.2:+2280181 | None:intergenic |
| GTTGTCAAGAGAATAGGGGA+AGG | 0.658130 | 3.2:-2278520 | MS.gene058351:CDS |
| TGTTCCAGAAAATTGTGAGG+TGG | 0.660896 | 3.2:-2279280 | MS.gene058351:CDS |
| TCCTGTTCCAGAAAATTGTG+AGG | 0.672952 | 3.2:-2279283 | MS.gene058351:CDS |
| CCAAGTCCTAGAACACCCAA+GGG | 0.690447 | 3.2:-2279153 | MS.gene058351:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTATTTTACTTATTAGTCTT+TGG | + | chr3.2:2278596-2278615 | None:intergenic | 15.0% |
| !! | AAAAAATTCAAGAGGAAAAT+AGG | - | chr3.2:2279765-2279784 | MS.gene058351:intron | 20.0% |
| !! | AGGATAAATATCAAATTTGT+GGG | - | chr3.2:2279245-2279264 | MS.gene058351:CDS | 20.0% |
| !! | CTTTAAATTCTACCTAATAT+TGG | - | chr3.2:2278564-2278583 | MS.gene058351:CDS | 20.0% |
| !! | TTTAGAAGGAAAAGAAATAA+AGG | - | chr3.2:2279928-2279947 | MS.gene058351:intron | 20.0% |
| !!! | TTTGATTTGTTTTTTGTTCT+AGG | - | chr3.2:2278629-2278648 | MS.gene058351:CDS | 20.0% |
| ! | AAATGTGATCCTTTCTAATA+TGG | + | chr3.2:2278667-2278686 | None:intergenic | 25.0% |
| ! | AAATTCTACCTAATATTGGA+GGG | - | chr3.2:2278568-2278587 | MS.gene058351:CDS | 25.0% |
| ! | AATTAAAAAACAATTGCACG+AGG | - | chr3.2:2279808-2279827 | MS.gene058351:intron | 25.0% |
| ! | GAGGATAAATATCAAATTTG+TGG | - | chr3.2:2279244-2279263 | MS.gene058351:CDS | 25.0% |
| ! | TAAATTCTACCTAATATTGG+AGG | - | chr3.2:2278567-2278586 | MS.gene058351:CDS | 25.0% |
| ! | TGTTTCAACTTGTGATTTAA+GGG | + | chr3.2:2279438-2279457 | None:intergenic | 25.0% |
| ! | TTGTTTCAACTTGTGATTTA+AGG | + | chr3.2:2279439-2279458 | None:intergenic | 25.0% |
| !! | CTTTTACAAAAAGGATCAAA+GGG | + | chr3.2:2279044-2279063 | None:intergenic | 25.0% |
| !! | GAAAAGTATACAAAAGAGAA+GGG | - | chr3.2:2280052-2280071 | MS.gene058351:intron | 25.0% |
| !! | TCTTTTACAAAAAGGATCAA+AGG | + | chr3.2:2279045-2279064 | None:intergenic | 25.0% |
| !! | TGAAAAGTATACAAAAGAGA+AGG | - | chr3.2:2280051-2280070 | MS.gene058351:intron | 25.0% |
| !! | TGATGATGAAAAAATTCAAG+AGG | - | chr3.2:2279757-2279776 | MS.gene058351:intron | 25.0% |
| !! | TTTTCCTCATAAACATTTTG+AGG | + | chr3.2:2279707-2279726 | None:intergenic | 25.0% |
| AAAAACAAAAAATACGCACC+AGG | + | chr3.2:2278534-2278553 | None:intergenic | 30.0% | |
| AAAAGATGCAAAGAAGGAAA+AGG | - | chr3.2:2279991-2280010 | MS.gene058351:intron | 30.0% | |
| AAAGCCTTTAGTTGCAAATA+TGG | - | chr3.2:2280150-2280169 | MS.gene058351:CDS | 30.0% | |
| AAAGTTTCATACACAGGATT+TGG | + | chr3.2:2278453-2278472 | None:intergenic | 30.0% | |
| AAGCCTTTAGTTGCAAATAT+GGG | - | chr3.2:2280151-2280170 | MS.gene058351:CDS | 30.0% | |
| AAGTTTCATACACAGGATTT+GGG | + | chr3.2:2278452-2278471 | None:intergenic | 30.0% | |
| AATTCTACCTAATATTGGAG+GGG | - | chr3.2:2278569-2278588 | MS.gene058351:CDS | 30.0% | |
| ACAATATTACTTGGAGATGA+AGG | + | chr3.2:2279569-2279588 | None:intergenic | 30.0% | |
| ACCTATAATTAGAGACAAGA+AGG | - | chr3.2:2279541-2279560 | MS.gene058351:intron | 30.0% | |
| ACCTTCTTGTCTCTAATTAT+AGG | + | chr3.2:2279545-2279564 | None:intergenic | 30.0% | |
| ATTCTAGTAATTGTTGCACT+TGG | - | chr3.2:2280181-2280200 | MS.gene058351:CDS | 30.0% | |
| GCTAGAAGAGATAAACTTAT+AGG | + | chr3.2:2280218-2280237 | None:intergenic | 30.0% | |
| TAGACCTCAAAATGTTTATG+AGG | - | chr3.2:2279700-2279719 | MS.gene058351:intron | 30.0% | |
| ! | AAAGCTTTCAATTTTCCCTT+AGG | + | chr3.2:2279662-2279681 | None:intergenic | 30.0% |
| ! | AAATGACTTGAACAAGTTGA+AGG | - | chr3.2:2279598-2279617 | MS.gene058351:intron | 30.0% |
| ! | AACAAGTTGAAGGAACAAAA+AGG | - | chr3.2:2279608-2279627 | MS.gene058351:intron | 30.0% |
| ! | ATTGCTTGAGATTTTGCTTT+TGG | + | chr3.2:2279737-2279756 | None:intergenic | 30.0% |
| ! | ATTTTCCTTCAATTCTGACT+TGG | + | chr3.2:2278481-2278500 | None:intergenic | 30.0% |
| ! | CCTACTTGTCTTTTACAAAA+AGG | + | chr3.2:2279053-2279072 | None:intergenic | 30.0% |
| ! | CCTTTTTGTAAAAGACAAGT+AGG | - | chr3.2:2279050-2279069 | MS.gene058351:CDS | 30.0% |
| ! | TTTTCCTTCTTTGCATCTTT+TGG | + | chr3.2:2279992-2280011 | None:intergenic | 30.0% |
| !! | GATCACAATACGTTTTTAGA+AGG | - | chr3.2:2279914-2279933 | MS.gene058351:intron | 30.0% |
| !! | TGATTTGGTTGTATTGACTT+GGG | - | chr3.2:2278797-2278816 | MS.gene058351:CDS | 30.0% |
| !! | TGTTCTGCAAGGTTTTATAA+AGG | - | chr3.2:2279220-2279239 | MS.gene058351:CDS | 30.0% |
| !! | TTGACTTGGAAAAGTATCTT+GGG | + | chr3.2:2279636-2279655 | None:intergenic | 30.0% |
| !! | TTGATTTGGTTGTATTGACT+TGG | - | chr3.2:2278796-2278815 | MS.gene058351:CDS | 30.0% |
| !! | TTTGACTTGGAAAAGTATCT+TGG | + | chr3.2:2279637-2279656 | None:intergenic | 30.0% |
| !!! | ACTTGGCACAATTTTTTCTT+TGG | + | chr3.2:2279462-2279481 | None:intergenic | 30.0% |
| AACCCTGTCACAATATTACT+TGG | + | chr3.2:2279578-2279597 | None:intergenic | 35.0% | |
| AGTTTCATACACAGGATTTG+GGG | + | chr3.2:2278451-2278470 | None:intergenic | 35.0% | |
| ATTCTCCTCGATGTCAATTT+GGG | - | chr3.2:2278859-2278878 | MS.gene058351:CDS | 35.0% | |
| CAACTTGTGATTTAAGGGAT+GGG | + | chr3.2:2279433-2279452 | None:intergenic | 35.0% | |
| CACTAAGGATTAATGGAGAA+AGG | - | chr3.2:2279279-2279298 | MS.gene058351:CDS | 35.0% | |
| CTACAATTGACAAAGCAAAG+AGG | - | chr3.2:2280017-2280036 | MS.gene058351:intron | 35.0% | |
| CTCCAAGTAATATTGTGACA+GGG | - | chr3.2:2279573-2279592 | MS.gene058351:intron | 35.0% | |
| CTCCATTAATCCTTAGTGTT+CGG | + | chr3.2:2279277-2279296 | None:intergenic | 35.0% | |
| CTTCAAGGCAAGTTTGAAAA+TGG | - | chr3.2:2279377-2279396 | MS.gene058351:CDS | 35.0% | |
| GCAAGAAAAGAGTCATCAAA+AGG | - | chr3.2:2279950-2279969 | MS.gene058351:intron | 35.0% | |
| TCAACTTGTGATTTAAGGGA+TGG | + | chr3.2:2279434-2279453 | None:intergenic | 35.0% | |
| TCCATTAATCCTTAGTGTTC+GGG | + | chr3.2:2279276-2279295 | None:intergenic | 35.0% | |
| TCTCCAAGTAATATTGTGAC+AGG | - | chr3.2:2279572-2279591 | MS.gene058351:intron | 35.0% | |
| TGAGGTCTAGATTCTACAAA+GGG | + | chr3.2:2279689-2279708 | None:intergenic | 35.0% | |
| TGTCTTAAGAAAACCCACTT+GGG | - | chr3.2:2278773-2278792 | MS.gene058351:CDS | 35.0% | |
| TGTGATCCTTTCTAATATGG+AGG | + | chr3.2:2278664-2278683 | None:intergenic | 35.0% | |
| TTGAGGTCTAGATTCTACAA+AGG | + | chr3.2:2279690-2279709 | None:intergenic | 35.0% | |
| TTGTCTTAAGAAAACCCACT+TGG | - | chr3.2:2278772-2278791 | MS.gene058351:CDS | 35.0% | |
| TTTCCAAGTCAAAGTCCTAA+GGG | - | chr3.2:2279644-2279663 | MS.gene058351:intron | 35.0% | |
| ! | AACTACTTGGTAGCAACAAA+TGG | - | chr3.2:2279303-2279322 | MS.gene058351:CDS | 35.0% |
| ! | CAAAGCAAAGAGGTATAAGA+AGG | - | chr3.2:2280027-2280046 | MS.gene058351:intron | 35.0% |
| ! | CAGGATATGATTGGTCAAAT+AGG | + | chr3.2:2279331-2279350 | None:intergenic | 35.0% |
| ! | CTCAAGTTGTCAAGAGAATA+GGG | - | chr3.2:2280104-2280123 | MS.gene058351:intron | 35.0% |
| ! | TCAAGTTGTCAAGAGAATAG+GGG | - | chr3.2:2280105-2280124 | MS.gene058351:intron | 35.0% |
| ! | TCTCAAGTTGTCAAGAGAAT+AGG | - | chr3.2:2280103-2280122 | MS.gene058351:intron | 35.0% |
| ! | TTTTCCAAGTCAAAGTCCTA+AGG | - | chr3.2:2279643-2279662 | MS.gene058351:intron | 35.0% |
| !! | TGCAAGGTTTTATAAAGGAG+AGG | - | chr3.2:2279225-2279244 | MS.gene058351:CDS | 35.0% |
| !! | TTTCTGGAACAGGATATGAT+TGG | + | chr3.2:2279340-2279359 | None:intergenic | 35.0% |
| !!! | TTAAGGGATGGGAACTTTTT+TGG | + | chr3.2:2279422-2279441 | None:intergenic | 35.0% |
| AATGGAGAAAGGCAACTACT+TGG | - | chr3.2:2279290-2279309 | MS.gene058351:CDS | 40.0% | |
| ACAAAAAATACGCACCAGGA+AGG | + | chr3.2:2278530-2278549 | None:intergenic | 40.0% | |
| ACAACCAAATCAACCCAAGT+GGG | + | chr3.2:2278789-2278808 | None:intergenic | 40.0% | |
| GAAGGGAATCTTCAAAGAAG+TGG | - | chr3.2:2280069-2280088 | MS.gene058351:intron | 40.0% | |
| GATTCTCCTCGATGTCAATT+TGG | - | chr3.2:2278858-2278877 | MS.gene058351:CDS | 40.0% | |
| GCACCCATATTTGCAACTAA+AGG | + | chr3.2:2280157-2280176 | None:intergenic | 40.0% | |
| GCTTGGAAAGTTTCATACAC+AGG | + | chr3.2:2278459-2278478 | None:intergenic | 40.0% | |
| GGTTCTTCTAGTACTCTAGT+TGG | + | chr3.2:2279524-2279543 | None:intergenic | 40.0% | |
| TACAACCAAATCAACCCAAG+TGG | + | chr3.2:2278790-2278809 | None:intergenic | 40.0% | |
| TATCACCCAAATTGACATCG+AGG | + | chr3.2:2278867-2278886 | None:intergenic | 40.0% | |
| TCCCGAACACTAAGGATTAA+TGG | - | chr3.2:2279272-2279291 | MS.gene058351:CDS | 40.0% | |
| TCCTGTTCCAGAAAATTGTG+AGG | - | chr3.2:2279346-2279365 | MS.gene058351:CDS | 40.0% | |
| TCTTCTAGTACTCTAGTTGG+AGG | + | chr3.2:2279521-2279540 | None:intergenic | 40.0% | |
| TGCACTCCTCCATATTAGAA+AGG | - | chr3.2:2278655-2278674 | MS.gene058351:CDS | 40.0% | |
| TGCTCCAAAAGATGCAAAGA+AGG | - | chr3.2:2279985-2280004 | MS.gene058351:intron | 40.0% | |
| TGTTCCAGAAAATTGTGAGG+TGG | - | chr3.2:2279349-2279368 | MS.gene058351:CDS | 40.0% | |
| TTTCCCTTAGGACTTTGACT+TGG | + | chr3.2:2279650-2279669 | None:intergenic | 40.0% | |
| TTTCTTCACATTCACCTTCC+TGG | - | chr3.2:2278513-2278532 | MS.gene058351:CDS | 40.0% | |
| ! | TGAGAGTGTACTCATTCTCA+AGG | - | chr3.2:2278825-2278844 | MS.gene058351:CDS | 40.0% |
| ! | TTCTCCACCTCACAATTTTC+TGG | + | chr3.2:2279356-2279375 | None:intergenic | 40.0% |
| !! | AAAACCCACTTGGGTTGATT+TGG | - | chr3.2:2278782-2278801 | MS.gene058351:CDS | 40.0% |
| !! | GAAGGAATATTGGTTCCCTT+GGG | + | chr3.2:2279494-2279513 | None:intergenic | 40.0% |
| !! | TGAAGGAATATTGGTTCCCT+TGG | + | chr3.2:2279495-2279514 | None:intergenic | 40.0% |
| !! | TGGAGGCTTTGAAGGAATAT+TGG | + | chr3.2:2279504-2279523 | None:intergenic | 40.0% |
| !!! | ACCTCACAATTTTCTGGAAC+AGG | + | chr3.2:2279350-2279369 | None:intergenic | 40.0% |
| !!! | GAAGGTTTTGTTCTAGAGGT+AGG | + | chr3.2:2278429-2278448 | None:intergenic | 40.0% |
| CCAAGCCAAGTCAGAATTGA+AGG | - | chr3.2:2278473-2278492 | MS.gene058351:CDS | 45.0% | |
| CTTCTCTCTCATGTTCTGCA+AGG | - | chr3.2:2279209-2279228 | MS.gene058351:CDS | 45.0% | |
| CTTTGGACCCCTCCAATATT+AGG | + | chr3.2:2278579-2278598 | None:intergenic | 45.0% | |
| GAGAATGAGTACACTCTCAC+AGG | + | chr3.2:2278824-2278843 | None:intergenic | 45.0% | |
| GTTGTCAAGAGAATAGGGGA+AGG | - | chr3.2:2280109-2280128 | MS.gene058351:intron | 45.0% | |
| TCATACACAGGATTTGGGGA+AGG | + | chr3.2:2278447-2278466 | None:intergenic | 45.0% | |
| TGTGAGGTGGAGAAACTTCA+AGG | - | chr3.2:2279362-2279381 | MS.gene058351:CDS | 45.0% | |
| ! | ACTCTAGTTGGAGGCTTTGA+AGG | + | chr3.2:2279512-2279531 | None:intergenic | 45.0% |
| !! | CCTTCAATTCTGACTTGGCT+TGG | + | chr3.2:2278476-2278495 | None:intergenic | 45.0% |
| !!! | TGGGGAAGGTTTTGTTCTAG+AGG | + | chr3.2:2278433-2278452 | None:intergenic | 45.0% |
| CCAAGTCCTAGAACACCCAA+GGG | - | chr3.2:2279476-2279495 | MS.gene058351:intron | 50.0% | |
| TTGGTTCCCTTGGGTGTTCT+AGG | + | chr3.2:2279485-2279504 | None:intergenic | 50.0% | |
| GCCAAGTCCTAGAACACCCA+AGG | - | chr3.2:2279475-2279494 | MS.gene058351:intron | 55.0% | |
| TGGGACTCTCCCGAACACTA+AGG | - | chr3.2:2279264-2279283 | MS.gene058351:CDS | 55.0% | |
| !! | CCCTTGGGTGTTCTAGGACT+TGG | + | chr3.2:2279479-2279498 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.2 | gene | 2278405 | 2280246 | 2278405 | ID=MS.gene058351 |
| chr3.2 | mRNA | 2278405 | 2280246 | 2278405 | ID=MS.gene058351.t1;Parent=MS.gene058351 |
| chr3.2 | exon | 2280117 | 2280246 | 2280117 | ID=MS.gene058351.t1.exon1;Parent=MS.gene058351.t1 |
| chr3.2 | CDS | 2280117 | 2280246 | 2280117 | ID=cds.MS.gene058351.t1;Parent=MS.gene058351.t1 |
| chr3.2 | exon | 2278405 | 2279420 | 2278405 | ID=MS.gene058351.t1.exon2;Parent=MS.gene058351.t1 |
| chr3.2 | CDS | 2278405 | 2279420 | 2278405 | ID=cds.MS.gene058351.t1;Parent=MS.gene058351.t1 |
| Gene Sequence |
| Protein sequence |
