Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene56397.t1 | XP_003596164.1 | 78.9 | 294 | 34 | 6 | 1 | 269 | 1 | 291 | 5.80E-124 | 453.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene56397.t1 | O49326 | 43.9 | 289 | 134 | 7 | 4 | 267 | 150 | 435 | 6.1e-58 | 225.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene56397.t1 | G7IH11 | 78.9 | 294 | 34 | 6 | 1 | 269 | 1 | 291 | 4.1e-124 | 453.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene04932 | MS.gene56397 | 0.810872 | 9.29E-51 | -1.69E-46 |
| MS.gene051439 | MS.gene56397 | 0.81684 | 4.49E-52 | -1.69E-46 |
| MS.gene052211 | MS.gene56397 | 0.805501 | 1.29E-49 | -1.69E-46 |
| MS.gene054742 | MS.gene56397 | 0.814792 | 1.29E-51 | -1.69E-46 |
| MS.gene056330 | MS.gene56397 | 0.800615 | 1.33E-48 | -1.69E-46 |
| MS.gene056688 | MS.gene56397 | 0.806938 | 6.45E-50 | -1.69E-46 |
| MS.gene057717 | MS.gene56397 | 0.80284 | 4.64E-49 | -1.69E-46 |
| MS.gene05926 | MS.gene56397 | 0.804889 | 1.74E-49 | -1.69E-46 |
| MS.gene059328 | MS.gene56397 | 0.826211 | 3.07E-54 | -1.69E-46 |
| MS.gene059955 | MS.gene56397 | 0.802208 | 6.26E-49 | -1.69E-46 |
| MS.gene060087 | MS.gene56397 | 0.816015 | 6.88E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene56397.t1 | MTR_2g069030 | 78.912 | 294 | 34 | 6 | 1 | 269 | 1 | 291 | 1.34e-156 | 439 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene56397.t1 | AT3G07720 | 57.785 | 289 | 98 | 4 | 4 | 269 | 6 | 293 | 6.77e-110 | 320 |
| MS.gene56397.t1 | AT5G48180 | 44.746 | 295 | 129 | 7 | 1 | 268 | 1 | 288 | 3.43e-73 | 227 |
| MS.gene56397.t1 | AT2G33070 | 43.945 | 289 | 134 | 7 | 4 | 267 | 150 | 435 | 1.50e-65 | 211 |
| MS.gene56397.t1 | AT2G33070 | 43.945 | 289 | 134 | 7 | 4 | 267 | 150 | 435 | 1.50e-65 | 211 |
| MS.gene56397.t1 | AT3G16400 | 42.561 | 289 | 138 | 7 | 4 | 267 | 149 | 434 | 4.72e-64 | 207 |
| MS.gene56397.t1 | AT3G16400 | 42.561 | 289 | 138 | 7 | 4 | 267 | 149 | 434 | 4.72e-64 | 207 |
| MS.gene56397.t1 | AT2G33070 | 43.643 | 291 | 134 | 8 | 4 | 267 | 150 | 437 | 1.14e-63 | 207 |
| MS.gene56397.t1 | AT3G16410 | 42.561 | 289 | 138 | 7 | 4 | 267 | 298 | 583 | 2.26e-63 | 209 |
| MS.gene56397.t1 | AT3G16390 | 41.869 | 289 | 137 | 9 | 4 | 267 | 149 | 431 | 2.21e-59 | 196 |
| MS.gene56397.t1 | AT3G16390 | 41.869 | 289 | 137 | 9 | 4 | 267 | 149 | 431 | 2.21e-59 | 196 |
| MS.gene56397.t1 | AT1G54040 | 40.909 | 308 | 133 | 11 | 4 | 268 | 5 | 306 | 2.79e-59 | 192 |
| MS.gene56397.t1 | AT1G54040 | 41.096 | 292 | 124 | 10 | 19 | 268 | 15 | 300 | 5.72e-56 | 183 |
| MS.gene56397.t1 | AT1G54040 | 41.810 | 232 | 98 | 8 | 68 | 268 | 1 | 226 | 8.16e-45 | 152 |
Find 96 sgRNAs with CRISPR-Local
Find 163 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAGGAAGGCTCAATGATTTA+TGG | 0.247369 | 2.4:+26367197 | MS.gene56397:CDS |
| TTGATTTCAAGTGGAGATAT+TGG | 0.278073 | 2.4:+26367100 | MS.gene56397:CDS |
| CGCGTGGTGGTGGGTGTTGC+CGG | 0.316739 | 2.4:-26366961 | None:intergenic |
| CGTGGGTGGTGCGCATTTGC+CGG | 0.322365 | 2.4:+26367620 | MS.gene56397:CDS |
| TTGACACTAAAACCAACAAT+TGG | 0.324853 | 2.4:+26367073 | MS.gene56397:CDS |
| CCAGGGGAAGAGGTGGGCCG+GGG | 0.332123 | 2.4:+26367276 | MS.gene56397:CDS |
| CTCTTCCACCAATACATAGA+TGG | 0.362533 | 2.4:-26367014 | None:intergenic |
| TGATTTCAAGTGGAGATATT+GGG | 0.367335 | 2.4:+26367101 | MS.gene56397:CDS |
| GGGAAACACATAATTGTATA+TGG | 0.375479 | 2.4:+26367461 | MS.gene56397:CDS |
| GCGCACCACCCACGTGGCCC+TGG | 0.395028 | 2.4:-26367611 | None:intergenic |
| CCAGCAATGGCGATACTTCA+TGG | 0.407514 | 2.4:+26365823 | None:intergenic |
| GCCAGGGGAAGAGGTGGGCC+GGG | 0.407672 | 2.4:+26367275 | MS.gene56397:CDS |
| GAAATCAATCGCCCAATTGT+TGG | 0.412423 | 2.4:-26367085 | None:intergenic |
| GAGATATTGGGCCTCCTAAC+CGG | 0.415028 | 2.4:+26367113 | MS.gene56397:CDS |
| TGGGCCTTTGATGTTGTAGA+TGG | 0.416755 | 2.4:+26367217 | MS.gene56397:CDS |
| AGGAAGGCTCAATGATTTAT+GGG | 0.428980 | 2.4:+26367198 | MS.gene56397:CDS |
| CAGGGGAAGAGGTGGGCCGG+GGG | 0.438450 | 2.4:+26367277 | MS.gene56397:CDS |
| TTCGGCGGCTGTGGAGTGGC+AGG | 0.443832 | 2.4:+26367178 | MS.gene56397:CDS |
| TGCCAGGGGAAGAGGTGGGC+CGG | 0.444231 | 2.4:+26367274 | MS.gene56397:CDS |
| GTGACACCGACGCGTGGTGG+TGG | 0.445088 | 2.4:-26366971 | None:intergenic |
| GTGAAAGTTGCCAGGGGAAG+AGG | 0.450348 | 2.4:+26367266 | MS.gene56397:CDS |
| CCCATGTGACCTTGGTCACT+AGG | 0.452252 | 2.4:-26367497 | None:intergenic |
| ATCTCCTGGTGAAAGTTGCC+AGG | 0.456230 | 2.4:+26367258 | MS.gene56397:CDS |
| CCCCGGCCCACCTCTTCCCC+TGG | 0.462381 | 2.4:-26367276 | None:intergenic |
| TTGGACGATAAGGTGGAATC+AGG | 0.467150 | 2.4:+26367581 | MS.gene56397:CDS |
| TGACACTAAAACCAACAATT+GGG | 0.471064 | 2.4:+26367074 | MS.gene56397:CDS |
| TTGGGCAACTGTTAGGCCCC+CGG | 0.476950 | 2.4:-26367293 | None:intergenic |
| ATGGACGAGGTTGGACGATA+AGG | 0.477851 | 2.4:+26367571 | MS.gene56397:CDS |
| GGCGATACTTCATGGCAGTT+GGG | 0.480675 | 2.4:+26365831 | MS.gene56397:CDS |
| GTGGAATCAGGTGACCATCC+AGG | 0.484389 | 2.4:+26367593 | MS.gene56397:CDS |
| TGGCGATACTTCATGGCAGT+TGG | 0.484948 | 2.4:+26365830 | MS.gene56397:CDS |
| ACCACCCACGTGGCCCTGGA+TGG | 0.485325 | 2.4:-26367607 | None:intergenic |
| AACACATAATTGTATATGGT+GGG | 0.491224 | 2.4:+26367465 | MS.gene56397:CDS |
| TGGTCAGTAGCCAATGTATC+CGG | 0.491412 | 2.4:+26366942 | MS.gene56397:intron |
| TTCCCCTGGCAACTTTCACC+AGG | 0.497950 | 2.4:-26367262 | None:intergenic |
| CCCTAGTGACCAAGGTCACA+TGG | 0.498673 | 2.4:+26367496 | MS.gene56397:CDS |
| TGGGTGGAATTTCCATCTCC+TGG | 0.503407 | 2.4:+26367244 | MS.gene56397:CDS |
| TGGAGAAACCATCTATGTAT+TGG | 0.503650 | 2.4:+26367006 | MS.gene56397:CDS |
| GGCCCAAGTGGGAAACAAGC+GGG | 0.504601 | 2.4:+26367396 | MS.gene56397:intron |
| GGACAGAAGGTCTATGCATT+CGG | 0.507522 | 2.4:+26366852 | MS.gene56397:CDS |
| ATGGAGTGGTAGCTCCGGTT+AGG | 0.508095 | 2.4:-26367127 | None:intergenic |
| GTGTCGCTCATCGGCAGTCA+TGG | 0.509728 | 2.4:-26367146 | None:intergenic |
| GACCAAGGTCACATGGGTGC+TGG | 0.513231 | 2.4:+26367503 | MS.gene56397:CDS |
| GTGGGTGTTGCCGGATACAT+TGG | 0.519347 | 2.4:-26366952 | None:intergenic |
| AACATACACGTGTCGCTCAT+CGG | 0.521986 | 2.4:-26367155 | None:intergenic |
| ACCATCCAGGGCCACGTGGG+TGG | 0.523986 | 2.4:+26367606 | MS.gene56397:CDS |
| CCATGTGACCTTGGTCACTA+GGG | 0.525844 | 2.4:-26367496 | None:intergenic |
| AAAGTTGCCAGGGGAAGAGG+TGG | 0.526563 | 2.4:+26367269 | MS.gene56397:CDS |
| ACATGTAACTTGTTGTCGAC+AGG | 0.531894 | 2.4:-26366897 | None:intergenic |
| GACACTATCATGGACGAGGT+TGG | 0.537344 | 2.4:+26367562 | MS.gene56397:CDS |
| TGGCAACTTTCACCAGGAGA+TGG | 0.538735 | 2.4:-26367256 | None:intergenic |
| GACCAGCACCCATGTGACCT+TGG | 0.549010 | 2.4:-26367505 | None:intergenic |
| TTGTTTCAGCTTGATCAAAG+AGG | 0.556708 | 2.4:+26366786 | MS.gene56397:intron |
| AACAAGTTGAAAACACACTA+CGG | 0.558479 | 2.4:-26367433 | None:intergenic |
| ATTGGGCGATTGATTTCAAG+TGG | 0.559126 | 2.4:+26367091 | MS.gene56397:CDS |
| TGGAATCAGGTGACCATCCA+GGG | 0.565322 | 2.4:+26367594 | MS.gene56397:CDS |
| GAGTGGTAGCTCCGGTTAGG+AGG | 0.569929 | 2.4:-26367124 | None:intergenic |
| CAGTCATGGAGTGGTAGCTC+CGG | 0.571117 | 2.4:-26367132 | None:intergenic |
| GGTGTCACAATGGCTGCAGT+TGG | 0.571354 | 2.4:+26366986 | MS.gene56397:CDS |
| AGAAACCATCTATGTATTGG+TGG | 0.575384 | 2.4:+26367009 | MS.gene56397:CDS |
| TTGATGTTGTAGATGGCAAG+TGG | 0.580423 | 2.4:+26367224 | MS.gene56397:CDS |
| ACTTCATGGCAGTTGGGTCA+AGG | 0.582658 | 2.4:+26365837 | MS.gene56397:CDS |
| AACAAGCGGGCTTAAACCAA+CGG | 0.585513 | 2.4:+26367409 | MS.gene56397:CDS |
| ACAAGTTGAAAACACACTAC+GGG | 0.586581 | 2.4:-26367432 | None:intergenic |
| GCGGCTGTGGAGTGGCAGGA+AGG | 0.587976 | 2.4:+26367182 | MS.gene56397:CDS |
| TGACACCGACGCGTGGTGGT+GGG | 0.593133 | 2.4:-26366970 | None:intergenic |
| GAAAACACACTACGGGCCGT+TGG | 0.595615 | 2.4:-26367425 | None:intergenic |
| TATTGCCGTCGTAGGACAGA+AGG | 0.597497 | 2.4:+26366839 | MS.gene56397:CDS |
| TCTCCTGGTGAAAGTTGCCA+GGG | 0.597873 | 2.4:+26367259 | MS.gene56397:CDS |
| GGGCCCAAGTGGGAAACAAG+CGG | 0.598165 | 2.4:+26367395 | MS.gene56397:intron |
| AAACACATAATTGTATATGG+TGG | 0.598952 | 2.4:+26367464 | MS.gene56397:CDS |
| GACGAGGTTGGACGATAAGG+TGG | 0.598960 | 2.4:+26367574 | MS.gene56397:CDS |
| ACACATAATTGTATATGGTG+GGG | 0.601078 | 2.4:+26367466 | MS.gene56397:CDS |
| GATCAAAGAGGAATCTTGCA+AGG | 0.605041 | 2.4:+26366798 | MS.gene56397:CDS |
| TAGACACGGAGACACTATCA+TGG | 0.609879 | 2.4:+26367552 | MS.gene56397:CDS |
| GAAATAGACCCTAGTGACCA+AGG | 0.612642 | 2.4:+26367488 | MS.gene56397:CDS |
| CGGAGACACTATCATGGACG+AGG | 0.615534 | 2.4:+26367558 | MS.gene56397:CDS |
| ACCACGCGTCGGTGTCACAA+TGG | 0.617054 | 2.4:+26366976 | MS.gene56397:CDS |
| CTTGCCATCTACAACATCAA+AGG | 0.626528 | 2.4:-26367221 | None:intergenic |
| TCACATGCTATTGCCGTCGT+AGG | 0.631927 | 2.4:+26366831 | MS.gene56397:CDS |
| GCTCATCGGCAGTCATGGAG+TGG | 0.634077 | 2.4:-26367141 | None:intergenic |
| GGTGACCATCCAGGGCCACG+TGG | 0.637621 | 2.4:+26367602 | MS.gene56397:CDS |
| TGTTGTAGATGGCAAGTGGG+TGG | 0.641254 | 2.4:+26367228 | MS.gene56397:CDS |
| GTGACCATCCAGGGCCACGT+GGG | 0.647327 | 2.4:+26367603 | MS.gene56397:CDS |
| CCTAGTGACCAAGGTCACAT+GGG | 0.649054 | 2.4:+26367497 | MS.gene56397:CDS |
| ATTGTGACACCGACGCGTGG+TGG | 0.649495 | 2.4:-26366974 | None:intergenic |
| TGATGTTGTAGATGGCAAGT+GGG | 0.652890 | 2.4:+26367225 | MS.gene56397:CDS |
| CAGAAGGTCTATGCATTCGG+TGG | 0.655189 | 2.4:+26366855 | MS.gene56397:CDS |
| GCCATTGTGACACCGACGCG+TGG | 0.669366 | 2.4:-26366977 | None:intergenic |
| CAACACCCACCACCACGCGT+CGG | 0.677304 | 2.4:+26366965 | MS.gene56397:CDS |
| GCAAATGCGCACCACCCACG+TGG | 0.684596 | 2.4:-26367617 | None:intergenic |
| AAGTTGCCAGGGGAAGAGGT+GGG | 0.687471 | 2.4:+26367270 | MS.gene56397:CDS |
| GGAGCTTTATGCATTAGACA+CGG | 0.692770 | 2.4:+26367538 | MS.gene56397:CDS |
| CTCCTGGTGAAAGTTGCCAG+GGG | 0.698526 | 2.4:+26367260 | MS.gene56397:CDS |
| ATAGACCTTCTGTCCTACGA+CGG | 0.710613 | 2.4:-26366844 | None:intergenic |
| TTGTTGTCGACAGGAACACG+AGG | 0.713518 | 2.4:-26366888 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTAATTTACCTAAATATCTA+AGG | - | chr2.4:26366488-26366507 | None:intergenic | 15.0% |
| !!! | ATTTCATTTTAAGAACAATA+TGG | - | chr2.4:26366746-26366765 | None:intergenic | 15.0% |
| !!! | TAAGATTTTTTGAAGTAATT+AGG | + | chr2.4:26366511-26366530 | MS.gene56397:intron | 15.0% |
| !!! | TTTCATTTTAAGAACAATAT+GGG | - | chr2.4:26366745-26366764 | None:intergenic | 15.0% |
| !!! | TTTGGATTAACAATATATTT+TGG | + | chr2.4:26366053-26366072 | MS.gene56397:intron | 15.0% |
| !! | AAAAATAGCTTATACATAAG+CGG | - | chr2.4:26366093-26366112 | None:intergenic | 20.0% |
| !! | ATATATTGTTAATCCAAACA+TGG | - | chr2.4:26366051-26366070 | None:intergenic | 20.0% |
| !! | GTTTGTGAAATGAAAAATTA+GGG | + | chr2.4:26365993-26366012 | MS.gene56397:intron | 20.0% |
| !! | TGTTTGTGAAATGAAAAATT+AGG | + | chr2.4:26365992-26366011 | MS.gene56397:intron | 20.0% |
| !! | TTTGTGAAATGAAAAATTAG+GGG | + | chr2.4:26365994-26366013 | MS.gene56397:intron | 20.0% |
| !!! | ATTTTTTGAAGTAATTAGGT+TGG | + | chr2.4:26366515-26366534 | MS.gene56397:intron | 20.0% |
| ! | AAACACATAATTGTATATGG+TGG | + | chr2.4:26367464-26367483 | MS.gene56397:CDS | 25.0% |
| ! | AACACATAATTGTATATGGT+GGG | + | chr2.4:26367465-26367484 | MS.gene56397:CDS | 25.0% |
| ! | AAGAACTAGTAATACTGTTT+AGG | - | chr2.4:26366252-26366271 | None:intergenic | 25.0% |
| ! | AATTGTTATAGTTCATGTAC+AGG | + | chr2.4:26366546-26366565 | MS.gene56397:intron | 25.0% |
| ! | GTATTTCTCCTTAGATATTT+AGG | + | chr2.4:26366477-26366496 | MS.gene56397:intron | 25.0% |
| ! | TATGGATTCTTTCTAGATTT+AGG | + | chr2.4:26366025-26366044 | MS.gene56397:intron | 25.0% |
| !! | GTTTATGACATTTTCATAAG+TGG | - | chr2.4:26366213-26366232 | None:intergenic | 25.0% |
| !!! | AAATTAGGGGTTTTAGTTTA+TGG | + | chr2.4:26366007-26366026 | MS.gene56397:intron | 25.0% |
| !!! | GTTGTTTTCATACGTTATTT+TGG | + | chr2.4:26366161-26366180 | MS.gene56397:intron | 25.0% |
| !!! | GTTTGAACAATTTTTAAGCA+CGG | + | chr2.4:26366395-26366414 | MS.gene56397:intron | 25.0% |
| !!! | TGTTTTCAACTTGTTTGATT+GGG | + | chr2.4:26367441-26367460 | MS.gene56397:CDS | 25.0% |
| ACACATAATTGTATATGGTG+GGG | + | chr2.4:26367466-26367485 | MS.gene56397:CDS | 30.0% | |
| ACATCTACAGGAACAATTAA+CGG | - | chr2.4:26366314-26366333 | None:intergenic | 30.0% | |
| CAAAAGCTATTCAAGAATAC+TGG | - | chr2.4:26366641-26366660 | None:intergenic | 30.0% | |
| GGGAAACACATAATTGTATA+TGG | + | chr2.4:26367461-26367480 | MS.gene56397:CDS | 30.0% | |
| TAATTGTTCCTGTAGATGTA+AGG | + | chr2.4:26366315-26366334 | MS.gene56397:intron | 30.0% | |
| TGACACTAAAACCAACAATT+GGG | + | chr2.4:26367074-26367093 | MS.gene56397:CDS | 30.0% | |
| TTGACACTAAAACCAACAAT+TGG | + | chr2.4:26367073-26367092 | MS.gene56397:CDS | 30.0% | |
| ! | AACAAGTTGAAAACACACTA+CGG | - | chr2.4:26367436-26367455 | None:intergenic | 30.0% |
| ! | TGATTTCAAGTGGAGATATT+GGG | + | chr2.4:26367101-26367120 | MS.gene56397:CDS | 30.0% |
| ! | TTGATTTCAAGTGGAGATAT+TGG | + | chr2.4:26367100-26367119 | MS.gene56397:CDS | 30.0% |
| !! | GTGTTTTCAACTTGTTTGAT+TGG | + | chr2.4:26367440-26367459 | MS.gene56397:CDS | 30.0% |
| !! | TTTTGCTCTGTTTAGCTTAT+TGG | + | chr2.4:26365933-26365952 | MS.gene56397:intron | 30.0% |
| AATGCCATCTAGTAGAATAC+TGG | - | chr2.4:26366701-26366720 | None:intergenic | 35.0% | |
| AATTAACGGTCTGTTTGGAT+TGG | - | chr2.4:26366300-26366319 | None:intergenic | 35.0% | |
| AGAAACCATCTATGTATTGG+TGG | + | chr2.4:26367009-26367028 | MS.gene56397:CDS | 35.0% | |
| AGGAAGGCTCAATGATTTAT+GGG | + | chr2.4:26367198-26367217 | MS.gene56397:CDS | 35.0% | |
| AGTTGCCCAAGGAAAAATAT+GGG | + | chr2.4:26367306-26367325 | MS.gene56397:CDS | 35.0% | |
| ATGACCTAGATACATTGACA+TGG | + | chr2.4:26366922-26366941 | MS.gene56397:intron | 35.0% | |
| CATGTACAGGCTAATAGTTA+AGG | + | chr2.4:26366559-26366578 | MS.gene56397:intron | 35.0% | |
| CCAACCTAAACTTAAGCAAA+AGG | - | chr2.4:26366357-26366376 | None:intergenic | 35.0% | |
| TCTACCAGTATTCTACTAGA+TGG | + | chr2.4:26366694-26366713 | MS.gene56397:intron | 35.0% | |
| TGGAGAAACCATCTATGTAT+TGG | + | chr2.4:26367006-26367025 | MS.gene56397:CDS | 35.0% | |
| TTCTAGATTTAGGCCATGTT+TGG | + | chr2.4:26366035-26366054 | MS.gene56397:intron | 35.0% | |
| TTGTTTCAGCTTGATCAAAG+AGG | + | chr2.4:26366786-26366805 | MS.gene56397:intron | 35.0% | |
| ! | ACAAGTTGAAAACACACTAC+GGG | - | chr2.4:26367435-26367454 | None:intergenic | 35.0% |
| ! | ACACAACCCATATTTTTCCT+TGG | - | chr2.4:26367315-26367334 | None:intergenic | 35.0% |
| ! | CACAACCCATATTTTTCCTT+GGG | - | chr2.4:26367314-26367333 | None:intergenic | 35.0% |
| ! | CCTTTTGCTTAAGTTTAGGT+TGG | + | chr2.4:26366354-26366373 | MS.gene56397:intron | 35.0% |
| ! | GGAAAAATATGGGTTGTGTA+TGG | + | chr2.4:26367316-26367335 | MS.gene56397:CDS | 35.0% |
| ! | GTGACCTTTTGCTTAAGTTT+AGG | + | chr2.4:26366350-26366369 | MS.gene56397:intron | 35.0% |
| !!! | ACGTTATTTTGGAGAGCTTA+TGG | + | chr2.4:26366172-26366191 | MS.gene56397:intron | 35.0% |
| CAGGAAGGCTCAATGATTTA+TGG | + | chr2.4:26367197-26367216 | MS.gene56397:CDS | 40.0% | |
| CAGTTGCCCAAGGAAAAATA+TGG | + | chr2.4:26367305-26367324 | MS.gene56397:CDS | 40.0% | |
| CTCTTCCACCAATACATAGA+TGG | - | chr2.4:26367017-26367036 | None:intergenic | 40.0% | |
| CTGACCATGTCAATGTATCT+AGG | - | chr2.4:26366929-26366948 | None:intergenic | 40.0% | |
| CTTGCCATCTACAACATCAA+AGG | - | chr2.4:26367224-26367243 | None:intergenic | 40.0% | |
| GAAATCAATCGCCCAATTGT+TGG | - | chr2.4:26367088-26367107 | None:intergenic | 40.0% | |
| GATCAAAGAGGAATCTTGCA+AGG | + | chr2.4:26366798-26366817 | MS.gene56397:CDS | 40.0% | |
| GGAACAATTAACGGTCTGTT+TGG | - | chr2.4:26366305-26366324 | None:intergenic | 40.0% | |
| TGATGTTGTAGATGGCAAGT+GGG | + | chr2.4:26367225-26367244 | MS.gene56397:CDS | 40.0% | |
| TTCCTGTAGATGTAAGGATG+CGG | + | chr2.4:26366321-26366340 | MS.gene56397:intron | 40.0% | |
| TTGATGTTGTAGATGGCAAG+TGG | + | chr2.4:26367224-26367243 | MS.gene56397:CDS | 40.0% | |
| ! | ATTGGGCGATTGATTTCAAG+TGG | + | chr2.4:26367091-26367110 | MS.gene56397:CDS | 40.0% |
| ! | GGAGCTTTATGCATTAGACA+CGG | + | chr2.4:26367538-26367557 | MS.gene56397:CDS | 40.0% |
| ! | TTTTTCCTTGGGCAACTGTT+AGG | - | chr2.4:26367303-26367322 | None:intergenic | 40.0% |
| !! | ACATGTAACTTGTTGTCGAC+AGG | - | chr2.4:26366900-26366919 | None:intergenic | 40.0% |
| !! | TGTGTATGGTTTTGCTGGAA+TGG | + | chr2.4:26367330-26367349 | MS.gene56397:CDS | 40.0% |
| ATAGACCTTCTGTCCTACGA+CGG | - | chr2.4:26366847-26366866 | None:intergenic | 45.0% | |
| CAAAAAACATGGGCCCAAGT+GGG | + | chr2.4:26367385-26367404 | MS.gene56397:intron | 45.0% | |
| GAAATAGACCCTAGTGACCA+AGG | + | chr2.4:26367488-26367507 | MS.gene56397:CDS | 45.0% | |
| GGACAGAAGGTCTATGCATT+CGG | + | chr2.4:26366852-26366871 | MS.gene56397:CDS | 45.0% | |
| TAGACACGGAGACACTATCA+TGG | + | chr2.4:26367552-26367571 | MS.gene56397:CDS | 45.0% | |
| TGGGCCTTTGATGTTGTAGA+TGG | + | chr2.4:26367217-26367236 | MS.gene56397:CDS | 45.0% | |
| TGGTCAGTAGCCAATGTATC+CGG | + | chr2.4:26366942-26366961 | MS.gene56397:intron | 45.0% | |
| TTGGACGATAAGGTGGAATC+AGG | + | chr2.4:26367581-26367600 | MS.gene56397:CDS | 45.0% | |
| ! | AACAAGCGGGCTTAAACCAA+CGG | + | chr2.4:26367409-26367428 | MS.gene56397:CDS | 45.0% |
| ! | AACATACACGTGTCGCTCAT+CGG | - | chr2.4:26367158-26367177 | None:intergenic | 45.0% |
| ! | GAGCGACACGTGTATGTTTT+CGG | + | chr2.4:26367160-26367179 | MS.gene56397:CDS | 45.0% |
| !! | TGGGTTGTGTATGGTTTTGC+TGG | + | chr2.4:26367325-26367344 | MS.gene56397:CDS | 45.0% |
| !! | TGGTTTTGCTGGAATGGAAG+TGG | + | chr2.4:26367336-26367355 | MS.gene56397:CDS | 45.0% |
| !!! | ATGGGTGCTGGTCAATTTTC+AGG | + | chr2.4:26367515-26367534 | MS.gene56397:CDS | 45.0% |
| !!! | CACTTGGGCCCATGTTTTTT+GGG | - | chr2.4:26367386-26367405 | None:intergenic | 45.0% |
| !!! | TGGGTGCTGGTCAATTTTCA+GGG | + | chr2.4:26367516-26367535 | MS.gene56397:CDS | 45.0% |
| ACTTCATGGCAGTTGGGTCA+AGG | + | chr2.4:26365837-26365856 | MS.gene56397:CDS | 50.0% | |
| ATCTCCTGGTGAAAGTTGCC+AGG | + | chr2.4:26367258-26367277 | MS.gene56397:CDS | 50.0% | |
| ATGGACGAGGTTGGACGATA+AGG | + | chr2.4:26367571-26367590 | MS.gene56397:CDS | 50.0% | |
| CAGAAGGTCTATGCATTCGG+TGG | + | chr2.4:26366855-26366874 | MS.gene56397:CDS | 50.0% | |
| CCAAAAAACATGGGCCCAAG+TGG | + | chr2.4:26367384-26367403 | MS.gene56397:intron | 50.0% | |
| CCATGTGACCTTGGTCACTA+GGG | - | chr2.4:26367499-26367518 | None:intergenic | 50.0% | |
| CCTAGTGACCAAGGTCACAT+GGG | + | chr2.4:26367497-26367516 | MS.gene56397:CDS | 50.0% | |
| CGACCTGGCCCAAAAAACAT+GGG | + | chr2.4:26367375-26367394 | MS.gene56397:intron | 50.0% | |
| CTCCGCATCCTTACATCTAC+AGG | - | chr2.4:26366326-26366345 | None:intergenic | 50.0% | |
| CTGTAGATGTAAGGATGCGG+AGG | + | chr2.4:26366324-26366343 | MS.gene56397:intron | 50.0% | |
| GACACTATCATGGACGAGGT+TGG | + | chr2.4:26367562-26367581 | MS.gene56397:CDS | 50.0% | |
| GAGATATTGGGCCTCCTAAC+CGG | + | chr2.4:26367113-26367132 | MS.gene56397:CDS | 50.0% | |
| GGCGATACTTCATGGCAGTT+GGG | + | chr2.4:26365831-26365850 | MS.gene56397:CDS | 50.0% | |
| TATGCAAGCGATAGCGAGAG+TGG | - | chr2.4:26366450-26366469 | None:intergenic | 50.0% | |
| TATTGCCGTCGTAGGACAGA+AGG | + | chr2.4:26366839-26366858 | MS.gene56397:CDS | 50.0% | |
| TCACATGCTATTGCCGTCGT+AGG | + | chr2.4:26366831-26366850 | MS.gene56397:CDS | 50.0% | |
| TCGACCTGGCCCAAAAAACA+TGG | + | chr2.4:26367374-26367393 | MS.gene56397:intron | 50.0% | |
| TCTCCTGGTGAAAGTTGCCA+GGG | + | chr2.4:26367259-26367278 | MS.gene56397:CDS | 50.0% | |
| TGACGTGCATTTCTTCGACC+TGG | + | chr2.4:26367360-26367379 | MS.gene56397:intron | 50.0% | |
| TGGAATCAGGTGACCATCCA+GGG | + | chr2.4:26367594-26367613 | MS.gene56397:CDS | 50.0% | |
| TGGCAACTTTCACCAGGAGA+TGG | - | chr2.4:26367259-26367278 | None:intergenic | 50.0% | |
| TGGCGATACTTCATGGCAGT+TGG | + | chr2.4:26365830-26365849 | MS.gene56397:CDS | 50.0% | |
| TGGGTGGAATTTCCATCTCC+TGG | + | chr2.4:26367244-26367263 | MS.gene56397:CDS | 50.0% | |
| TGTTGTAGATGGCAAGTGGG+TGG | + | chr2.4:26367228-26367247 | MS.gene56397:CDS | 50.0% | |
| TTGTTGTCGACAGGAACACG+AGG | - | chr2.4:26366891-26366910 | None:intergenic | 50.0% | |
| ! | CGACACGTGTATGTTTTCGG+CGG | + | chr2.4:26367163-26367182 | MS.gene56397:CDS | 50.0% |
| !! | CTGCCATGAAGTATCGCCAT+CGG | - | chr2.4:26365829-26365848 | None:intergenic | 50.0% |
| !!! | CCACTTGGGCCCATGTTTTT+TGG | - | chr2.4:26367387-26367406 | None:intergenic | 50.0% |
| !!! | GGGTGCTGGTCAATTTTCAG+GGG | + | chr2.4:26367517-26367536 | MS.gene56397:CDS | 50.0% |
| AAAGTTGCCAGGGGAAGAGG+TGG | + | chr2.4:26367269-26367288 | MS.gene56397:CDS | 55.0% | |
| AAGCCCGCTTGTTTCCCACT+TGG | - | chr2.4:26367402-26367421 | None:intergenic | 55.0% | |
| AAGTTGCCAGGGGAAGAGGT+GGG | + | chr2.4:26367270-26367289 | MS.gene56397:CDS | 55.0% | |
| AGCCCGCTTGTTTCCCACTT+GGG | - | chr2.4:26367401-26367420 | None:intergenic | 55.0% | |
| ATGGAGTGGTAGCTCCGGTT+AGG | - | chr2.4:26367130-26367149 | None:intergenic | 55.0% | |
| CAGTCATGGAGTGGTAGCTC+CGG | - | chr2.4:26367135-26367154 | None:intergenic | 55.0% | |
| CCCATGTGACCTTGGTCACT+AGG | - | chr2.4:26367500-26367519 | None:intergenic | 55.0% | |
| CCCTAGTGACCAAGGTCACA+TGG | + | chr2.4:26367496-26367515 | MS.gene56397:CDS | 55.0% | |
| CGGAGACACTATCATGGACG+AGG | + | chr2.4:26367558-26367577 | MS.gene56397:CDS | 55.0% | |
| CTCCTGGTGAAAGTTGCCAG+GGG | + | chr2.4:26367260-26367279 | MS.gene56397:CDS | 55.0% | |
| GAAAACACACTACGGGCCGT+TGG | - | chr2.4:26367428-26367447 | None:intergenic | 55.0% | |
| GACGAGGTTGGACGATAAGG+TGG | + | chr2.4:26367574-26367593 | MS.gene56397:CDS | 55.0% | |
| GTGAAAGTTGCCAGGGGAAG+AGG | + | chr2.4:26367266-26367285 | MS.gene56397:CDS | 55.0% | |
| GTGGAATCAGGTGACCATCC+AGG | + | chr2.4:26367593-26367612 | MS.gene56397:CDS | 55.0% | |
| TTCCCCTGGCAACTTTCACC+AGG | - | chr2.4:26367265-26367284 | None:intergenic | 55.0% | |
| ! | GGTGTCACAATGGCTGCAGT+TGG | + | chr2.4:26366986-26367005 | MS.gene56397:CDS | 55.0% |
| ! | GTGGGTGTTGCCGGATACAT+TGG | - | chr2.4:26366955-26366974 | None:intergenic | 55.0% |
| ! | GTGTATGTTTTCGGCGGCTG+TGG | + | chr2.4:26367169-26367188 | MS.gene56397:CDS | 55.0% |
| ATTGTGACACCGACGCGTGG+TGG | - | chr2.4:26366977-26366996 | None:intergenic | 60.0% | |
| GACCAAGGTCACATGGGTGC+TGG | + | chr2.4:26367503-26367522 | MS.gene56397:CDS | 60.0% | |
| GACCAGCACCCATGTGACCT+TGG | - | chr2.4:26367508-26367527 | None:intergenic | 60.0% | |
| GAGTGGTAGCTCCGGTTAGG+AGG | - | chr2.4:26367127-26367146 | None:intergenic | 60.0% | |
| GCTCATCGGCAGTCATGGAG+TGG | - | chr2.4:26367144-26367163 | None:intergenic | 60.0% | |
| GGCCCAAGTGGGAAACAAGC+GGG | + | chr2.4:26367396-26367415 | MS.gene56397:intron | 60.0% | |
| GGGCCCAAGTGGGAAACAAG+CGG | + | chr2.4:26367395-26367414 | MS.gene56397:intron | 60.0% | |
| TTGGGCAACTGTTAGGCCCC+CGG | - | chr2.4:26367296-26367315 | None:intergenic | 60.0% | |
| ! | GTGTCGCTCATCGGCAGTCA+TGG | - | chr2.4:26367149-26367168 | None:intergenic | 60.0% |
| ! | TGTTTTCGGCGGCTGTGGAG+TGG | + | chr2.4:26367174-26367193 | MS.gene56397:CDS | 60.0% |
| !! | ACCACGCGTCGGTGTCACAA+TGG | + | chr2.4:26366976-26366995 | MS.gene56397:CDS | 60.0% |
| !!! | GGGCCCATGTTTTTTGGGCC+AGG | - | chr2.4:26367381-26367400 | None:intergenic | 60.0% |
| CAACACCCACCACCACGCGT+CGG | + | chr2.4:26366965-26366984 | MS.gene56397:CDS | 65.0% | |
| GCAAATGCGCACCACCCACG+TGG | - | chr2.4:26367620-26367639 | None:intergenic | 65.0% | |
| GCCATTGTGACACCGACGCG+TGG | - | chr2.4:26366980-26366999 | None:intergenic | 65.0% | |
| GGGGGCCTAACAGTTGCCCA+AGG | + | chr2.4:26367295-26367314 | MS.gene56397:CDS | 65.0% | |
| GTGACCATCCAGGGCCACGT+GGG | + | chr2.4:26367603-26367622 | MS.gene56397:CDS | 65.0% | |
| TGACACCGACGCGTGGTGGT+GGG | - | chr2.4:26366973-26366992 | None:intergenic | 65.0% | |
| ACCACCCACGTGGCCCTGGA+TGG | - | chr2.4:26367610-26367629 | None:intergenic | 70.0% | |
| ACCATCCAGGGCCACGTGGG+TGG | + | chr2.4:26367606-26367625 | MS.gene56397:CDS | 70.0% | |
| GCGGCTGTGGAGTGGCAGGA+AGG | + | chr2.4:26367182-26367201 | MS.gene56397:CDS | 70.0% | |
| GGTGACCATCCAGGGCCACG+TGG | + | chr2.4:26367602-26367621 | MS.gene56397:CDS | 70.0% | |
| GTGACACCGACGCGTGGTGG+TGG | - | chr2.4:26366974-26366993 | None:intergenic | 70.0% | |
| TGCCAGGGGAAGAGGTGGGC+CGG | + | chr2.4:26367274-26367293 | MS.gene56397:CDS | 70.0% | |
| TTCGGCGGCTGTGGAGTGGC+AGG | + | chr2.4:26367178-26367197 | MS.gene56397:CDS | 70.0% | |
| !! | CGCGTGGTGGTGGGTGTTGC+CGG | - | chr2.4:26366964-26366983 | None:intergenic | 70.0% |
| CAGGGGAAGAGGTGGGCCGG+GGG | + | chr2.4:26367277-26367296 | MS.gene56397:CDS | 75.0% | |
| CCAGGGGAAGAGGTGGGCCG+GGG | + | chr2.4:26367276-26367295 | MS.gene56397:CDS | 75.0% | |
| GCCAGGGGAAGAGGTGGGCC+GGG | + | chr2.4:26367275-26367294 | MS.gene56397:CDS | 75.0% | |
| ! | CCCCGGCCCACCTCTTCCCC+TGG | - | chr2.4:26367279-26367298 | None:intergenic | 80.0% |
| ! | GCGCACCACCCACGTGGCCC+TGG | - | chr2.4:26367614-26367633 | None:intergenic | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2.4 | gene | 26365829 | 26367641 | 26365829 | ID=MS.gene56397 |
| chr2.4 | mRNA | 26365829 | 26367641 | 26365829 | ID=MS.gene56397.t1;Parent=MS.gene56397 |
| chr2.4 | exon | 26365829 | 26365858 | 26365829 | ID=MS.gene56397.t1.exon1;Parent=MS.gene56397.t1 |
| chr2.4 | CDS | 26365829 | 26365858 | 26365829 | ID=cds.MS.gene56397.t1;Parent=MS.gene56397.t1 |
| chr2.4 | exon | 26366795 | 26366919 | 26366795 | ID=MS.gene56397.t1.exon2;Parent=MS.gene56397.t1 |
| chr2.4 | CDS | 26366795 | 26366919 | 26366795 | ID=cds.MS.gene56397.t1;Parent=MS.gene56397.t1 |
| chr2.4 | exon | 26366949 | 26367363 | 26366949 | ID=MS.gene56397.t1.exon3;Parent=MS.gene56397.t1 |
| chr2.4 | CDS | 26366949 | 26367363 | 26366949 | ID=cds.MS.gene56397.t1;Parent=MS.gene56397.t1 |
| chr2.4 | exon | 26367404 | 26367641 | 26367404 | ID=MS.gene56397.t1.exon4;Parent=MS.gene56397.t1 |
| chr2.4 | CDS | 26367404 | 26367641 | 26367404 | ID=cds.MS.gene56397.t1;Parent=MS.gene56397.t1 |
| Gene Sequence |
| Protein sequence |
