Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene059328.t1 | XP_003591981.1 | 91.9 | 185 | 15 | 0 | 1 | 185 | 1 | 185 | 5.00E-95 | 357.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene059328.t1 | G7I9N5 | 91.9 | 185 | 15 | 0 | 1 | 185 | 1 | 185 | 3.6e-95 | 357.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049549 | MS.gene059328 | 0.803276 | 3.77E-49 | -1.69E-46 |
| MS.gene051996 | MS.gene059328 | 0.807551 | 4.78E-50 | -1.69E-46 |
| MS.gene052211 | MS.gene059328 | 0.809411 | 1.92E-50 | -1.69E-46 |
| MS.gene052223 | MS.gene059328 | 0.801475 | 8.85E-49 | -1.69E-46 |
| MS.gene054742 | MS.gene059328 | 0.843679 | 1.21E-58 | -1.69E-46 |
| MS.gene055240 | MS.gene059328 | 0.800973 | 1.12E-48 | -1.69E-46 |
| MS.gene055629 | MS.gene059328 | -0.803612 | 3.21E-49 | -1.69E-46 |
| MS.gene056330 | MS.gene059328 | 0.813199 | 2.89E-51 | -1.69E-46 |
| MS.gene056590 | MS.gene059328 | 0.803116 | 4.06E-49 | -1.69E-46 |
| MS.gene056591 | MS.gene059328 | 0.801616 | 8.28E-49 | -1.69E-46 |
| MS.gene056748 | MS.gene059328 | 0.812016 | 5.24E-51 | -1.69E-46 |
| MS.gene056920 | MS.gene059328 | 0.84432 | 8.13E-59 | -1.69E-46 |
| MS.gene056923 | MS.gene059328 | 0.818494 | 1.90E-52 | -1.69E-46 |
| MS.gene056924 | MS.gene059328 | 0.804072 | 2.57E-49 | -1.69E-46 |
| MS.gene056925 | MS.gene059328 | 0.803964 | 2.71E-49 | -1.69E-46 |
| MS.gene057261 | MS.gene059328 | 0.816179 | 6.32E-52 | -1.69E-46 |
| MS.gene059328 | MS.gene059955 | 0.801039 | 1.09E-48 | -1.69E-46 |
| MS.gene059328 | MS.gene060087 | 0.819285 | 1.26E-52 | -1.69E-46 |
| MS.gene059328 | MS.gene062005 | 0.806735 | 7.12E-50 | -1.69E-46 |
| MS.gene059328 | MS.gene062180 | 0.802882 | 4.54E-49 | -1.69E-46 |
| MS.gene059328 | MS.gene063988 | 0.827084 | 1.90E-54 | -1.69E-46 |
| MS.gene059328 | MS.gene065724 | 0.844256 | 8.46E-59 | -1.69E-46 |
| MS.gene059328 | MS.gene065729 | 0.808416 | 3.13E-50 | -1.69E-46 |
| MS.gene059328 | MS.gene065842 | 0.80516 | 1.53E-49 | -1.69E-46 |
| MS.gene059328 | MS.gene06593 | 0.82812 | 1.07E-54 | -1.69E-46 |
| MS.gene059328 | MS.gene066602 | 0.816744 | 4.72E-52 | -1.69E-46 |
| MS.gene059328 | MS.gene066937 | 0.813662 | 2.28E-51 | -1.69E-46 |
| MS.gene059328 | MS.gene06756 | 0.821815 | 3.30E-53 | -1.69E-46 |
| MS.gene059328 | MS.gene06805 | 0.82804 | 1.12E-54 | -1.69E-46 |
| MS.gene059328 | MS.gene069482 | 0.802345 | 5.86E-49 | -1.69E-46 |
| MS.gene059328 | MS.gene073526 | 0.814164 | 1.77E-51 | -1.69E-46 |
| MS.gene059328 | MS.gene074299 | 0.813158 | 2.95E-51 | -1.69E-46 |
| MS.gene059328 | MS.gene07488 | 0.802613 | 5.16E-49 | -1.69E-46 |
| MS.gene059328 | MS.gene23507 | 0.843064 | 1.76E-58 | -1.69E-46 |
| MS.gene059328 | MS.gene24881 | 0.80194 | 7.10E-49 | -1.69E-46 |
| MS.gene059328 | MS.gene28427 | 0.806818 | 6.84E-50 | -1.69E-46 |
| MS.gene059328 | MS.gene28548 | 0.807548 | 4.79E-50 | -1.69E-46 |
| MS.gene059328 | MS.gene30183 | 0.81299 | 3.21E-51 | -1.69E-46 |
| MS.gene059328 | MS.gene30666 | 0.810595 | 1.07E-50 | -1.69E-46 |
| MS.gene059328 | MS.gene33490 | 0.800723 | 1.26E-48 | -1.69E-46 |
| MS.gene059328 | MS.gene33596 | 0.807383 | 5.19E-50 | -1.69E-46 |
| MS.gene059328 | MS.gene33992 | 0.965148 | 3.13E-124 | -1.69E-46 |
| MS.gene059328 | MS.gene34140 | 0.803887 | 2.81E-49 | -1.69E-46 |
| MS.gene059328 | MS.gene35433 | 0.810569 | 1.08E-50 | -1.69E-46 |
| MS.gene059328 | MS.gene35460 | 0.803271 | 3.78E-49 | -1.69E-46 |
| MS.gene059328 | MS.gene35690 | 0.829756 | 4.31E-55 | -1.69E-46 |
| MS.gene059328 | MS.gene35741 | 0.812711 | 3.70E-51 | -1.69E-46 |
| MS.gene059328 | MS.gene36354 | 0.801813 | 7.54E-49 | -1.69E-46 |
| MS.gene059328 | MS.gene37355 | 0.800329 | 1.52E-48 | -1.69E-46 |
| MS.gene059328 | MS.gene38435 | 0.835062 | 2.09E-56 | -1.69E-46 |
| MS.gene059328 | MS.gene38687 | 0.802429 | 5.63E-49 | -1.69E-46 |
| MS.gene059328 | MS.gene40171 | 0.800893 | 1.16E-48 | -1.69E-46 |
| MS.gene059328 | MS.gene40846 | 0.814363 | 1.60E-51 | -1.69E-46 |
| MS.gene059328 | MS.gene41490 | 0.804401 | 2.20E-49 | -1.69E-46 |
| MS.gene059328 | MS.gene42005 | 0.801215 | 1.00E-48 | -1.69E-46 |
| MS.gene059328 | MS.gene42096 | 0.824441 | 8.06E-54 | -1.69E-46 |
| MS.gene059328 | MS.gene43162 | 0.836291 | 1.02E-56 | -1.69E-46 |
| MS.gene059328 | MS.gene43874 | 0.812265 | 4.62E-51 | -1.69E-46 |
| MS.gene059328 | MS.gene44712 | 0.807547 | 4.79E-50 | -1.69E-46 |
| MS.gene059328 | MS.gene45463 | 0.819523 | 1.11E-52 | -1.69E-46 |
| MS.gene059328 | MS.gene46198 | 0.806164 | 9.39E-50 | -1.69E-46 |
| MS.gene059328 | MS.gene48169 | 0.827491 | 1.52E-54 | -1.69E-46 |
| MS.gene059328 | MS.gene48885 | 0.805948 | 1.04E-49 | -1.69E-46 |
| MS.gene059328 | MS.gene49021 | 0.810653 | 1.04E-50 | -1.69E-46 |
| MS.gene059328 | MS.gene50055 | 0.80243 | 5.63E-49 | -1.69E-46 |
| MS.gene059328 | MS.gene52370 | 0.808438 | 3.10E-50 | -1.69E-46 |
| MS.gene059328 | MS.gene52797 | 0.817557 | 3.10E-52 | -1.69E-46 |
| MS.gene059328 | MS.gene54029 | 0.815925 | 7.20E-52 | -1.69E-46 |
| MS.gene059328 | MS.gene54146 | 0.829229 | 5.78E-55 | -1.69E-46 |
| MS.gene059328 | MS.gene54346 | 0.821643 | 3.62E-53 | -1.69E-46 |
| MS.gene059328 | MS.gene56397 | 0.826211 | 3.07E-54 | -1.69E-46 |
| MS.gene059328 | MS.gene56439 | 0.806686 | 7.29E-50 | -1.69E-46 |
| MS.gene059328 | MS.gene58107 | 0.803515 | 3.36E-49 | -1.69E-46 |
| MS.gene059328 | MS.gene58786 | 0.809064 | 2.28E-50 | -1.69E-46 |
| MS.gene059328 | MS.gene59920 | 0.814131 | 1.80E-51 | -1.69E-46 |
| MS.gene059328 | MS.gene60581 | 0.830623 | 2.65E-55 | -1.69E-46 |
| MS.gene059328 | MS.gene63659 | 0.802649 | 5.08E-49 | -1.69E-46 |
| MS.gene059328 | MS.gene63914 | 0.80948 | 1.85E-50 | -1.69E-46 |
| MS.gene059328 | MS.gene64276 | 0.805782 | 1.13E-49 | -1.69E-46 |
| MS.gene059328 | MS.gene64584 | 0.837002 | 6.72E-57 | -1.69E-46 |
| MS.gene059328 | MS.gene65144 | 0.808536 | 2.95E-50 | -1.69E-46 |
| MS.gene059328 | MS.gene65724 | 0.81629 | 5.97E-52 | -1.69E-46 |
| MS.gene059328 | MS.gene65820 | 0.800368 | 1.49E-48 | -1.69E-46 |
| MS.gene059328 | MS.gene67371 | 0.827933 | 1.19E-54 | -1.69E-46 |
| MS.gene059328 | MS.gene67377 | 0.821357 | 4.21E-53 | -1.69E-46 |
| MS.gene059328 | MS.gene69355 | 0.814699 | 1.35E-51 | -1.69E-46 |
| MS.gene059328 | MS.gene71925 | 0.807974 | 3.89E-50 | -1.69E-46 |
| MS.gene059328 | MS.gene72940 | 0.81385 | 2.08E-51 | -1.69E-46 |
| MS.gene059328 | MS.gene73512 | 0.801081 | 1.07E-48 | -1.69E-46 |
| MS.gene059328 | MS.gene73993 | 0.806443 | 8.21E-50 | -1.69E-46 |
| MS.gene059328 | MS.gene74786 | 0.801995 | 6.92E-49 | -1.69E-46 |
| MS.gene059328 | MS.gene75460 | 0.801232 | 9.92E-49 | -1.69E-46 |
| MS.gene059328 | MS.gene75472 | 0.826027 | 3.40E-54 | -1.69E-46 |
| MS.gene059328 | MS.gene76479 | 0.820839 | 5.55E-53 | -1.69E-46 |
| MS.gene059328 | MS.gene78356 | 0.801943 | 7.09E-49 | -1.69E-46 |
| MS.gene059328 | MS.gene79023 | 0.825688 | 4.09E-54 | -1.69E-46 |
| MS.gene059328 | MS.gene79232 | 0.809717 | 1.65E-50 | -1.69E-46 |
| MS.gene059328 | MS.gene80293 | 0.841902 | 3.59E-58 | -1.69E-46 |
| MS.gene059328 | MS.gene80744 | 0.823255 | 1.53E-53 | -1.69E-46 |
| MS.gene059328 | MS.gene81349 | 0.810245 | 1.27E-50 | -1.69E-46 |
| MS.gene059328 | MS.gene81350 | 0.807122 | 5.90E-50 | -1.69E-46 |
| MS.gene059328 | MS.gene81770 | 0.850841 | 1.31E-60 | -1.69E-46 |
| MS.gene059328 | MS.gene81774 | 0.85182 | 6.92E-61 | -1.69E-46 |
| MS.gene059328 | MS.gene83364 | 0.801765 | 7.72E-49 | -1.69E-46 |
| MS.gene059328 | MS.gene84143 | 0.816061 | 6.71E-52 | -1.69E-46 |
| MS.gene059328 | MS.gene84307 | 0.818221 | 2.20E-52 | -1.69E-46 |
| MS.gene059328 | MS.gene84373 | 0.811273 | 7.60E-51 | -1.69E-46 |
| MS.gene059328 | MS.gene85750 | 0.844984 | 5.39E-59 | -1.69E-46 |
| MS.gene059328 | MS.gene87043 | 0.816038 | 6.80E-52 | -1.69E-46 |
| MS.gene059328 | MS.gene87222 | 0.807394 | 5.16E-50 | -1.69E-46 |
| MS.gene059328 | MS.gene87346 | 0.807008 | 6.24E-50 | -1.69E-46 |
| MS.gene059328 | MS.gene88971 | 0.8081 | 3.66E-50 | -1.69E-46 |
| MS.gene059328 | MS.gene90936 | 0.80673 | 7.14E-50 | -1.69E-46 |
| MS.gene059328 | MS.gene91754 | 0.802346 | 5.86E-49 | -1.69E-46 |
| MS.gene059328 | MS.gene93200 | 0.802702 | 4.95E-49 | -1.69E-46 |
| MS.gene059328 | MS.gene96782 | 0.808614 | 2.84E-50 | -1.69E-46 |
| MS.gene059328 | MS.gene97019 | 0.80093 | 1.14E-48 | -1.69E-46 |
| MS.gene059328 | MS.gene97024 | 0.842512 | 2.47E-58 | -1.69E-46 |
| MS.gene059328 | MS.gene97182 | 0.821967 | 3.05E-53 | -1.69E-46 |
| MS.gene059328 | MS.gene97335 | 0.807782 | 4.27E-50 | -1.69E-46 |
| MS.gene059328 | MS.gene97354 | 0.81411 | 1.82E-51 | -1.69E-46 |
| MS.gene059328 | MS.gene97790 | 0.827826 | 1.26E-54 | -1.69E-46 |
| MS.gene059328 | MS.gene98907 | 0.80766 | 4.54E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene059328 | MS.gene041739 | PPI |
| MS.gene059328 | MS.gene54750 | PPI |
| MS.gene059328 | MS.gene041740 | PPI |
| MS.gene059328 | MS.gene041741 | PPI |
| MS.gene059328 | MS.gene006015 | PPI |
| MS.gene006014 | MS.gene059328 | PPI |
| MS.gene059328 | MS.gene33992 | PPI |
| MS.gene059328 | MS.gene043625 | PPI |
| MS.gene059328 | MS.gene33993 | PPI |
| MS.gene059328 | MS.gene006013 | PPI |
| MS.gene33997 | MS.gene059328 | PPI |
| MS.gene059328 | MS.gene059329 | PPI |
| MS.gene059328 | MS.gene33994 | PPI |
| MS.gene041740 | MS.gene059328 | PPI |
| MS.gene059329 | MS.gene059328 | PPI |
| MS.gene059328 | MS.gene038651 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene059328.t1 | MTR_1g095900 | 91.892 | 185 | 15 | 0 | 1 | 185 | 1 | 185 | 7.28e-127 | 354 |
| MS.gene059328.t1 | MTR_1g095890 | 79.570 | 186 | 37 | 1 | 1 | 185 | 1 | 186 | 2.42e-108 | 308 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene059328.t1 | AT2G35830 | 64.641 | 181 | 58 | 3 | 7 | 184 | 8 | 185 | 8.99e-80 | 235 |
| MS.gene059328.t1 | AT2G35810 | 61.878 | 181 | 62 | 3 | 7 | 184 | 22 | 198 | 3.24e-79 | 234 |
| MS.gene059328.t1 | AT2G35810 | 61.878 | 181 | 62 | 3 | 7 | 184 | 22 | 198 | 3.24e-79 | 234 |
| MS.gene059328.t1 | AT2G35820 | 60.556 | 180 | 65 | 2 | 7 | 184 | 8 | 183 | 6.53e-77 | 228 |
| MS.gene059328.t1 | AT2G35820 | 60.556 | 180 | 65 | 2 | 7 | 184 | 98 | 273 | 2.52e-75 | 228 |
| MS.gene059328.t1 | AT2G35830 | 63.536 | 181 | 55 | 4 | 7 | 184 | 8 | 180 | 7.77e-75 | 223 |
Find 51 sgRNAs with CRISPR-Local
Find 109 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCACCGGACAGCCTGGGTTT+TGG | 0.289224 | 1.4:+74558479 | MS.gene059328:CDS |
| GGTGGTAATGTTTGGTATCT+TGG | 0.305200 | 1.4:+74559618 | MS.gene059328:CDS |
| CGGTGAAGCTTGACGAATTT+GGG | 0.309643 | 1.4:-74559774 | None:intergenic |
| GCGGTGAAGCTTGACGAATT+TGG | 0.316031 | 1.4:-74559775 | None:intergenic |
| CGTGAAGGTGGTGACAATTA+AGG | 0.355574 | 1.4:+74558403 | MS.gene059328:CDS |
| CGAGCCTTCACCGGACAGCC+TGG | 0.382824 | 1.4:+74558472 | MS.gene059328:CDS |
| GGTCCATTGGTGGTAATGTT+TGG | 0.421411 | 1.4:+74559610 | MS.gene059328:CDS |
| ATGAAAACCTGGGAATTCCT+TGG | 0.436299 | 1.4:-74558529 | None:intergenic |
| GACCTGAAATCTTGAAAACT+TGG | 0.446401 | 1.4:-74559752 | None:intergenic |
| GAGATCAAGTTGAGCATCAT+GGG | 0.463032 | 1.4:-74558504 | None:intergenic |
| ACTCAGTGCCTTGGGTCCAT+TGG | 0.468229 | 1.4:+74559597 | MS.gene059328:CDS |
| TGAAAACCTGGGAATTCCTT+GGG | 0.471791 | 1.4:-74558528 | None:intergenic |
| GTGATTCTAGAAAACTTTAG+TGG | 0.473787 | 1.4:-74559558 | None:intergenic |
| CAGTGCCTTGGGTCCATTGG+TGG | 0.474720 | 1.4:+74559600 | MS.gene059328:CDS |
| GGACCAAAACCCAGGCTGTC+CGG | 0.482253 | 1.4:-74558482 | None:intergenic |
| ATCTCACCCAAGGAATTCCC+AGG | 0.491993 | 1.4:+74558522 | MS.gene059328:CDS |
| TGAGATCAAGTTGAGCATCA+TGG | 0.496448 | 1.4:-74558505 | None:intergenic |
| CAAATGTGACTCAGTGCCTT+GGG | 0.497185 | 1.4:+74559589 | MS.gene059328:CDS |
| CACCGCGGTACATGGCATGC+TGG | 0.498508 | 1.4:+74559792 | MS.gene059328:CDS |
| TCAAGCTTCACCGCGGTACA+TGG | 0.506906 | 1.4:+74559784 | MS.gene059328:CDS |
| TTATGTTCCTCCCGCCGTTG+AGG | 0.514150 | 1.4:+74559725 | MS.gene059328:CDS |
| AAACCCAGGCTGTCCGGTGA+AGG | 0.523048 | 1.4:-74558476 | None:intergenic |
| GAGCCTTCACCGGACAGCCT+GGG | 0.530139 | 1.4:+74558473 | MS.gene059328:CDS |
| CATCATGGGGACCAAAACCC+AGG | 0.536245 | 1.4:-74558490 | None:intergenic |
| GCAAATGTGACTCAGTGCCT+TGG | 0.539728 | 1.4:+74559588 | MS.gene059328:CDS |
| TCATCTGAATCAATAACTGA+TGG | 0.545432 | 1.4:-74559651 | None:intergenic |
| ATACCAAACATTACCACCAA+TGG | 0.547916 | 1.4:-74559613 | None:intergenic |
| ACTTGGACGTCCTCAACGGC+GGG | 0.570976 | 1.4:-74559735 | None:intergenic |
| TCAGGTCGTCGAGCCTTCAC+CGG | 0.571180 | 1.4:+74558463 | MS.gene059328:CDS |
| TTAAGGCGATCGAAGCAACT+CGG | 0.573606 | 1.4:+74558420 | MS.gene059328:CDS |
| GATGAAATCAAAGATGACTC+AGG | 0.574790 | 1.4:+74559669 | MS.gene059328:CDS |
| TAAGGCGATCGAAGCAACTC+GGG | 0.574909 | 1.4:+74558421 | MS.gene059328:CDS |
| TGATTCTAGAAAACTTTAGT+GGG | 0.575199 | 1.4:-74559557 | None:intergenic |
| CACAACTTTAAGAATGACAA+TGG | 0.590296 | 1.4:+74560044 | MS.gene059328:CDS |
| TAATGTTTGGTATCTTGGAG+TGG | 0.602976 | 1.4:+74559623 | MS.gene059328:CDS |
| GAACTTCAAAGACTACGGTC+AGG | 0.607170 | 1.4:+74558445 | MS.gene059328:CDS |
| AATAATGGAGAGCGTGAAGG+TGG | 0.607965 | 1.4:+74558391 | None:intergenic |
| CATTACCACCAATGGACCCA+AGG | 0.621913 | 1.4:-74559605 | None:intergenic |
| AATAATAATGGAGAGCGTGA+AGG | 0.623264 | 1.4:+74558388 | None:intergenic |
| CGGGCGAACTTCAAAGACTA+CGG | 0.628730 | 1.4:+74558440 | MS.gene059328:CDS |
| TGGACGTCCTCAACGGCGGG+AGG | 0.632229 | 1.4:-74559732 | None:intergenic |
| GCTCAACTTGATCTCACCCA+AGG | 0.638310 | 1.4:+74558512 | MS.gene059328:CDS |
| AACTTGGACGTCCTCAACGG+CGG | 0.650626 | 1.4:-74559736 | None:intergenic |
| ATCGTGCTAGACTTAAATAG+AGG | 0.664302 | 1.4:-74559816 | None:intergenic |
| TCTATTTAAGTCTAGCACGA+TGG | 0.669627 | 1.4:+74559818 | MS.gene059328:CDS |
| GAAAACTTGGACGTCCTCAA+CGG | 0.683782 | 1.4:-74559739 | None:intergenic |
| GACCAGCATGCCATGTACCG+CGG | 0.687313 | 1.4:-74559794 | None:intergenic |
| ACGGTCGTTAAGTCGTGCGG+CGG | 0.689464 | 1.4:+74559696 | MS.gene059328:CDS |
| AAAACGGTCGTTAAGTCGTG+CGG | 0.693454 | 1.4:+74559693 | MS.gene059328:CDS |
| AGATCAAGTTGAGCATCATG+GGG | 0.694936 | 1.4:-74558503 | None:intergenic |
| AAATTCGTCAAGCTTCACCG+CGG | 0.805303 | 1.4:+74559777 | MS.gene059328:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAATTAACATATAGAATT+TGG | - | chr1.4:74558589-74558608 | None:intergenic | 10.0% |
| !! | GAAATATATATATATGATAA+TGG | - | chr1.4:74558999-74559018 | None:intergenic | 10.0% |
| !!! | AACTAATTTTAATAATATGT+TGG | - | chr1.4:74559498-74559517 | None:intergenic | 10.0% |
| !!! | ATTTTTTTCACTTTAATTTT+TGG | + | chr1.4:74558611-74558630 | MS.gene059328:intron | 10.0% |
| !!! | TTATTTTGTCATTTTTTTAA+TGG | + | chr1.4:74559973-74559992 | MS.gene059328:intron | 10.0% |
| !!! | TTTTTTTCACTTTAATTTTT+GGG | + | chr1.4:74558612-74558631 | MS.gene059328:intron | 10.0% |
| !! | AAAAGGAAACAAAAAAAAAA+GGG | - | chr1.4:74559233-74559252 | None:intergenic | 15.0% |
| !! | TTAAAGATAACATTTATCTT+TGG | + | chr1.4:74559107-74559126 | MS.gene059328:intron | 15.0% |
| !!! | ATTTTCTTATTTTTGTAAGT+TGG | - | chr1.4:74558561-74558580 | None:intergenic | 15.0% |
| !!! | TAATTTTAATAATATGTTGG+AGG | - | chr1.4:74559495-74559514 | None:intergenic | 15.0% |
| !! | AATGAACTGATATGTTAAAA+AGG | - | chr1.4:74558963-74558982 | None:intergenic | 20.0% |
| !! | CAAAAGGAAACAAAAAAAAA+AGG | - | chr1.4:74559234-74559253 | None:intergenic | 20.0% |
| !! | GAACTAGTAAAATTTATTAG+AGG | + | chr1.4:74558820-74558839 | MS.gene059328:intron | 20.0% |
| !! | TATATACTACCCTATTATAT+TGG | + | chr1.4:74559274-74559293 | MS.gene059328:intron | 20.0% |
| !! | TGAAAAACTTACATTTGTAT+TGG | - | chr1.4:74559865-74559884 | None:intergenic | 20.0% |
| !!! | AAAATTAGTTTGTGTTTTGT+AGG | + | chr1.4:74559508-74559527 | MS.gene059328:intron | 20.0% |
| !!! | AATACAAATGTAAGTTTTTC+AGG | + | chr1.4:74559864-74559883 | MS.gene059328:intron | 20.0% |
| !!! | AATTTTGCTATAAAGTAGTT+TGG | - | chr1.4:74559313-74559332 | None:intergenic | 20.0% |
| ! | AAATGTGACGATTATTAGTA+TGG | + | chr1.4:74559144-74559163 | MS.gene059328:intron | 25.0% |
| ! | AATGTGACGATTATTAGTAT+GGG | + | chr1.4:74559145-74559164 | MS.gene059328:intron | 25.0% |
| ! | CATTATATTTCACACGAATA+AGG | - | chr1.4:74559021-74559040 | None:intergenic | 25.0% |
| ! | TACTTTATAGCAAAATTGAG+AGG | + | chr1.4:74559316-74559335 | MS.gene059328:intron | 25.0% |
| !! | ATCTAAGACATACTACAAAA+CGG | - | chr1.4:74558940-74558959 | None:intergenic | 25.0% |
| !! | TGATTCTAGAAAACTTTAGT+GGG | - | chr1.4:74559560-74559579 | None:intergenic | 25.0% |
| !!! | CCAATAATATTCAGTTTTGA+CGG | - | chr1.4:74558904-74558923 | None:intergenic | 25.0% |
| !!! | TGCTTTTTTATTATGTGTAC+AGG | + | chr1.4:74560004-74560023 | MS.gene059328:intron | 25.0% |
| !!! | TTTCACTTTAATTTTTGGGT+TGG | + | chr1.4:74558616-74558635 | MS.gene059328:intron | 25.0% |
| AGATGTAAGATTCCATTGAA+AGG | - | chr1.4:74559892-74559911 | None:intergenic | 30.0% | |
| AGTTTATCCATAGCATCAAA+AGG | - | chr1.4:74559250-74559269 | None:intergenic | 30.0% | |
| ATGTAAGATTCCATTGAAAG+GGG | - | chr1.4:74559890-74559909 | None:intergenic | 30.0% | |
| CCGTCAAAACTGAATATTAT+TGG | + | chr1.4:74558901-74558920 | MS.gene059328:intron | 30.0% | |
| GATGTAAGATTCCATTGAAA+GGG | - | chr1.4:74559891-74559910 | None:intergenic | 30.0% | |
| GATTATTAGTATGGGACATA+GGG | + | chr1.4:74559153-74559172 | MS.gene059328:intron | 30.0% | |
| TAATAATATGTTGGAGGACT+TGG | - | chr1.4:74559489-74559508 | None:intergenic | 30.0% | |
| TACCTATGATTAAGATCGAA+CGG | - | chr1.4:74558688-74558707 | None:intergenic | 30.0% | |
| TATCAGTTAAATTGAGCTGA+TGG | - | chr1.4:74559418-74559437 | None:intergenic | 30.0% | |
| TCATCTGAATCAATAACTGA+TGG | - | chr1.4:74559654-74559673 | None:intergenic | 30.0% | |
| TTGGTGAAATATGAAAACCT+GGG | - | chr1.4:74558542-74558561 | None:intergenic | 30.0% | |
| ! | CACAACTTTAAGAATGACAA+TGG | + | chr1.4:74560044-74560063 | MS.gene059328:CDS | 30.0% |
| ! | GTGATTCTAGAAAACTTTAG+TGG | - | chr1.4:74559561-74559580 | None:intergenic | 30.0% |
| ! | TTTGCTATAAAGTAGTTTGG+TGG | - | chr1.4:74559310-74559329 | None:intergenic | 30.0% |
| ! | TTTGTTTCCTTTTGATGCTA+TGG | + | chr1.4:74559240-74559259 | MS.gene059328:intron | 30.0% |
| AACCGTTCGATCTTAATCAT+AGG | + | chr1.4:74558683-74558702 | MS.gene059328:intron | 35.0% | |
| AGAGCATGTCAAATGAATTC+AGG | - | chr1.4:74559923-74559942 | None:intergenic | 35.0% | |
| AGTACCAAGTTTACACTGTT+TGG | + | chr1.4:74559176-74559195 | MS.gene059328:intron | 35.0% | |
| ATACCAAACATTACCACCAA+TGG | - | chr1.4:74559616-74559635 | None:intergenic | 35.0% | |
| ATCGTGCTAGACTTAAATAG+AGG | - | chr1.4:74559819-74559838 | None:intergenic | 35.0% | |
| CAAAGATGACTCAGGAAAAA+CGG | + | chr1.4:74559677-74559696 | MS.gene059328:CDS | 35.0% | |
| CGATTATTAGTATGGGACAT+AGG | + | chr1.4:74559152-74559171 | MS.gene059328:intron | 35.0% | |
| GACCTGAAATCTTGAAAACT+TGG | - | chr1.4:74559755-74559774 | None:intergenic | 35.0% | |
| GATGAAATCAAAGATGACTC+AGG | + | chr1.4:74559669-74559688 | MS.gene059328:CDS | 35.0% | |
| GGGTGAATGCCAATATAATA+GGG | - | chr1.4:74559286-74559305 | None:intergenic | 35.0% | |
| GTACCAAGTTTACACTGTTT+GGG | + | chr1.4:74559177-74559196 | MS.gene059328:intron | 35.0% | |
| TAATGTTTGGTATCTTGGAG+TGG | + | chr1.4:74559623-74559642 | MS.gene059328:CDS | 35.0% | |
| TATAGCAAAATTGAGAGGCT+AGG | + | chr1.4:74559321-74559340 | MS.gene059328:intron | 35.0% | |
| TCTATTTAAGTCTAGCACGA+TGG | + | chr1.4:74559818-74559837 | MS.gene059328:CDS | 35.0% | |
| TGCAAAGTTTCTTTCTTCGA+TGG | - | chr1.4:74559361-74559380 | None:intergenic | 35.0% | |
| TGGGTGAATGCCAATATAAT+AGG | - | chr1.4:74559287-74559306 | None:intergenic | 35.0% | |
| ! | CTATAAAGTAGTTTGGTGGT+GGG | - | chr1.4:74559306-74559325 | None:intergenic | 35.0% |
| ! | GTTGGTGAAATATGAAAACC+TGG | - | chr1.4:74558543-74558562 | None:intergenic | 35.0% |
| !! | ATGCTCTTTAGAGTAAGACA+TGG | + | chr1.4:74559936-74559955 | MS.gene059328:intron | 35.0% |
| !! | GGACTTTTACAATCTAGAGT+TGG | + | chr1.4:74559839-74559858 | MS.gene059328:CDS | 35.0% |
| !! | GTCCAAGTTTTCAAGATTTC+AGG | + | chr1.4:74559750-74559769 | MS.gene059328:CDS | 35.0% |
| !! | TGCTCTTTAGAGTAAGACAT+GGG | + | chr1.4:74559937-74559956 | MS.gene059328:intron | 35.0% |
| !! | TTTGGGTTGGATTGATCATT+TGG | + | chr1.4:74558629-74558648 | MS.gene059328:intron | 35.0% |
| ATGAAAACCTGGGAATTCCT+TGG | - | chr1.4:74558532-74558551 | None:intergenic | 40.0% | |
| CAACCCAAACAGTGTAAACT+TGG | - | chr1.4:74559183-74559202 | None:intergenic | 40.0% | |
| TGAAAACCTGGGAATTCCTT+GGG | - | chr1.4:74558531-74558550 | None:intergenic | 40.0% | |
| ! | GCTATAAAGTAGTTTGGTGG+TGG | - | chr1.4:74559307-74559326 | None:intergenic | 40.0% |
| ! | GGTGGTAATGTTTGGTATCT+TGG | + | chr1.4:74559618-74559637 | MS.gene059328:CDS | 40.0% |
| !! | AGATCAAGTTGAGCATCATG+GGG | - | chr1.4:74558506-74558525 | None:intergenic | 40.0% |
| !! | GAGATCAAGTTGAGCATCAT+GGG | - | chr1.4:74558507-74558526 | None:intergenic | 40.0% |
| !! | TGAGATCAAGTTGAGCATCA+TGG | - | chr1.4:74558508-74558527 | None:intergenic | 40.0% |
| AAAACGGTCGTTAAGTCGTG+CGG | + | chr1.4:74559693-74559712 | MS.gene059328:CDS | 45.0% | |
| AAATTCGTCAAGCTTCACCG+CGG | + | chr1.4:74559777-74559796 | MS.gene059328:CDS | 45.0% | |
| AGCAAAATTGAGAGGCTAGG+AGG | + | chr1.4:74559324-74559343 | MS.gene059328:intron | 45.0% | |
| CAAATGTGACTCAGTGCCTT+GGG | + | chr1.4:74559589-74559608 | MS.gene059328:CDS | 45.0% | |
| CGGTGAAGCTTGACGAATTT+GGG | - | chr1.4:74559777-74559796 | None:intergenic | 45.0% | |
| CGTGAAGGTGGTGACAATTA+AGG | + | chr1.4:74558403-74558422 | MS.gene059328:CDS | 45.0% | |
| GAAAACTTGGACGTCCTCAA+CGG | - | chr1.4:74559742-74559761 | None:intergenic | 45.0% | |
| GAACTTCAAAGACTACGGTC+AGG | + | chr1.4:74558445-74558464 | MS.gene059328:CDS | 45.0% | |
| TGAGAGGCTAGGAGGAATAT+TGG | + | chr1.4:74559332-74559351 | MS.gene059328:intron | 45.0% | |
| TTAAGGCGATCGAAGCAACT+CGG | + | chr1.4:74558420-74558439 | MS.gene059328:CDS | 45.0% | |
| ! | GGTCCATTGGTGGTAATGTT+TGG | + | chr1.4:74559610-74559629 | MS.gene059328:CDS | 45.0% |
| !!! | GTTTTTCAGGCCCCTTTCAA+TGG | + | chr1.4:74559877-74559896 | MS.gene059328:intron | 45.0% |
| ATCTCACCCAAGGAATTCCC+AGG | + | chr1.4:74558522-74558541 | MS.gene059328:CDS | 50.0% | |
| CATTACCACCAATGGACCCA+AGG | - | chr1.4:74559608-74559627 | None:intergenic | 50.0% | |
| CGGGCGAACTTCAAAGACTA+CGG | + | chr1.4:74558440-74558459 | MS.gene059328:CDS | 50.0% | |
| GCAAATGTGACTCAGTGCCT+TGG | + | chr1.4:74559588-74559607 | MS.gene059328:CDS | 50.0% | |
| GCGGTGAAGCTTGACGAATT+TGG | - | chr1.4:74559778-74559797 | None:intergenic | 50.0% | |
| GCTCAACTTGATCTCACCCA+AGG | + | chr1.4:74558512-74558531 | MS.gene059328:CDS | 50.0% | |
| TAAGGCGATCGAAGCAACTC+GGG | + | chr1.4:74558421-74558440 | MS.gene059328:CDS | 50.0% | |
| AACTTGGACGTCCTCAACGG+CGG | - | chr1.4:74559739-74559758 | None:intergenic | 55.0% | |
| ACTCAGTGCCTTGGGTCCAT+TGG | + | chr1.4:74559597-74559616 | MS.gene059328:CDS | 55.0% | |
| CATCATGGGGACCAAAACCC+AGG | - | chr1.4:74558493-74558512 | None:intergenic | 55.0% | |
| TCAAGCTTCACCGCGGTACA+TGG | + | chr1.4:74559784-74559803 | MS.gene059328:CDS | 55.0% | |
| TTATGTTCCTCCCGCCGTTG+AGG | + | chr1.4:74559725-74559744 | MS.gene059328:CDS | 55.0% | |
| AAACCCAGGCTGTCCGGTGA+AGG | - | chr1.4:74558479-74558498 | None:intergenic | 60.0% | |
| ACGGTCGTTAAGTCGTGCGG+CGG | + | chr1.4:74559696-74559715 | MS.gene059328:CDS | 60.0% | |
| ACTTGGACGTCCTCAACGGC+GGG | - | chr1.4:74559738-74559757 | None:intergenic | 60.0% | |
| CAGTGCCTTGGGTCCATTGG+TGG | + | chr1.4:74559600-74559619 | MS.gene059328:CDS | 60.0% | |
| GACCAGCATGCCATGTACCG+CGG | - | chr1.4:74559797-74559816 | None:intergenic | 60.0% | |
| GGACCAAAACCCAGGCTGTC+CGG | - | chr1.4:74558485-74558504 | None:intergenic | 60.0% | |
| TCAGGTCGTCGAGCCTTCAC+CGG | + | chr1.4:74558463-74558482 | MS.gene059328:CDS | 60.0% | |
| ! | TCACCGGACAGCCTGGGTTT+TGG | + | chr1.4:74558479-74558498 | MS.gene059328:CDS | 60.0% |
| CACCGCGGTACATGGCATGC+TGG | + | chr1.4:74559792-74559811 | MS.gene059328:CDS | 65.0% | |
| GAGCCTTCACCGGACAGCCT+GGG | + | chr1.4:74558473-74558492 | MS.gene059328:CDS | 65.0% | |
| CGAGCCTTCACCGGACAGCC+TGG | + | chr1.4:74558472-74558491 | MS.gene059328:CDS | 70.0% | |
| TGGACGTCCTCAACGGCGGG+AGG | - | chr1.4:74559735-74559754 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 74558395 | 74560091 | 74558395 | ID=MS.gene059328 |
| chr1.4 | mRNA | 74558395 | 74560091 | 74558395 | ID=MS.gene059328.t1;Parent=MS.gene059328 |
| chr1.4 | exon | 74558395 | 74558543 | 74558395 | ID=MS.gene059328.t1.exon1;Parent=MS.gene059328.t1 |
| chr1.4 | CDS | 74558395 | 74558543 | 74558395 | ID=cds.MS.gene059328.t1;Parent=MS.gene059328.t1 |
| chr1.4 | exon | 74559530 | 74559872 | 74559530 | ID=MS.gene059328.t1.exon2;Parent=MS.gene059328.t1 |
| chr1.4 | CDS | 74559530 | 74559872 | 74559530 | ID=cds.MS.gene059328.t1;Parent=MS.gene059328.t1 |
| chr1.4 | exon | 74560026 | 74560091 | 74560026 | ID=MS.gene059328.t1.exon3;Parent=MS.gene059328.t1 |
| chr1.4 | CDS | 74560026 | 74560091 | 74560026 | ID=cds.MS.gene059328.t1;Parent=MS.gene059328.t1 |
| Gene Sequence |
| Protein sequence |
