Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene56536.t1 | XP_003607748.1 | 84.2 | 467 | 72 | 1 | 1 | 467 | 1 | 465 | 4.20E-215 | 757.3 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene56536.t1 | Q8LFV3 | 42.0 | 371 | 174 | 12 | 113 | 466 | 101 | 447 | 3.8e-55 | 217.2 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene56536.t1 | G7JG96 | 84.2 | 467 | 72 | 1 | 1 | 467 | 1 | 465 | 3.0e-215 | 757.3 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene56536.t1 | TF | C2C2-Dof |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene050702 | MS.gene56536 | 0.858795 | 6.45E-63 | -1.69E-46 |
MS.gene052224 | MS.gene56536 | 0.84748 | 1.13E-59 | -1.69E-46 |
MS.gene053401 | MS.gene56536 | -0.860186 | 2.46E-63 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene56536.t1 | MTR_4g082060 | 95.075 | 467 | 21 | 1 | 1 | 467 | 1 | 465 | 0.0 | 894 |
MS.gene56536.t1 | MTR_6g012450 | 44.071 | 506 | 229 | 18 | 1 | 465 | 1 | 493 | 9.11e-115 | 347 |
MS.gene56536.t1 | MTR_7g010950 | 43.687 | 499 | 232 | 14 | 1 | 465 | 1 | 484 | 8.14e-107 | 326 |
MS.gene56536.t1 | MTR_3g435480 | 43.838 | 495 | 216 | 20 | 1 | 465 | 1 | 463 | 9.76e-105 | 320 |
MS.gene56536.t1 | MTR_5g041530 | 41.237 | 485 | 151 | 17 | 6 | 465 | 4 | 379 | 1.13e-86 | 270 |
MS.gene56536.t1 | MTR_5g041380 | 38.320 | 488 | 151 | 17 | 6 | 465 | 4 | 369 | 2.55e-73 | 236 |
MS.gene56536.t1 | MTR_5g041400 | 36.605 | 489 | 152 | 18 | 6 | 466 | 4 | 362 | 8.28e-71 | 229 |
MS.gene56536.t1 | MTR_8g044220 | 33.537 | 492 | 231 | 19 | 5 | 465 | 11 | 437 | 4.82e-62 | 208 |
MS.gene56536.t1 | MTR_7g086780 | 32.787 | 488 | 237 | 17 | 1 | 465 | 1 | 420 | 6.42e-59 | 199 |
MS.gene56536.t1 | MTR_5g041420 | 49.528 | 212 | 70 | 8 | 4 | 185 | 2 | 206 | 2.19e-50 | 174 |
MS.gene56536.t1 | MTR_6g027460 | 34.056 | 323 | 142 | 11 | 4 | 306 | 9 | 280 | 1.71e-42 | 154 |
MS.gene56536.t1 | MTR_6g027450 | 46.857 | 175 | 76 | 4 | 85 | 243 | 51 | 224 | 1.05e-41 | 151 |
MS.gene56536.t1 | MTR_2g016030 | 86.667 | 60 | 8 | 0 | 116 | 175 | 41 | 100 | 1.20e-33 | 124 |
MS.gene56536.t1 | MTR_3g091820 | 61.765 | 68 | 26 | 0 | 108 | 175 | 29 | 96 | 1.33e-25 | 106 |
MS.gene56536.t1 | MTR_8g027295 | 65.625 | 64 | 22 | 0 | 117 | 180 | 19 | 82 | 2.92e-25 | 105 |
MS.gene56536.t1 | MTR_8g068210 | 52.381 | 84 | 40 | 0 | 97 | 180 | 7 | 90 | 5.48e-25 | 105 |
MS.gene56536.t1 | MTR_8g079060 | 63.934 | 61 | 22 | 0 | 122 | 182 | 29 | 89 | 1.31e-24 | 102 |
MS.gene56536.t1 | MTR_2g093220 | 64.615 | 65 | 23 | 0 | 111 | 175 | 29 | 93 | 2.73e-24 | 102 |
MS.gene56536.t1 | MTR_8g479350 | 66.102 | 59 | 20 | 0 | 122 | 180 | 68 | 126 | 3.58e-24 | 103 |
MS.gene56536.t1 | MTR_4g022370 | 67.241 | 58 | 19 | 0 | 118 | 175 | 78 | 135 | 4.04e-24 | 103 |
MS.gene56536.t1 | MTR_1g077600 | 57.971 | 69 | 29 | 0 | 106 | 174 | 27 | 95 | 9.08e-24 | 100 |
MS.gene56536.t1 | MTR_1g077600 | 57.971 | 69 | 29 | 0 | 106 | 174 | 27 | 95 | 9.65e-24 | 101 |
MS.gene56536.t1 | MTR_4g088580 | 74.074 | 54 | 14 | 0 | 124 | 177 | 57 | 110 | 1.55e-23 | 102 |
MS.gene56536.t1 | MTR_2g059540 | 73.469 | 49 | 13 | 0 | 122 | 170 | 31 | 79 | 3.73e-23 | 97.4 |
MS.gene56536.t1 | MTR_1g056810 | 53.333 | 90 | 40 | 2 | 117 | 204 | 6 | 95 | 5.64e-23 | 99.0 |
MS.gene56536.t1 | MTR_4g063780 | 58.571 | 70 | 26 | 1 | 108 | 174 | 58 | 127 | 5.75e-23 | 99.8 |
MS.gene56536.t1 | MTR_2g096740 | 68.519 | 54 | 17 | 0 | 122 | 175 | 62 | 115 | 6.72e-23 | 98.6 |
MS.gene56536.t1 | MTR_2g096740 | 68.519 | 54 | 17 | 0 | 122 | 175 | 77 | 130 | 6.95e-23 | 99.0 |
MS.gene56536.t1 | MTR_4g109980 | 67.925 | 53 | 17 | 0 | 120 | 172 | 38 | 90 | 7.25e-23 | 99.4 |
MS.gene56536.t1 | MTR_8g015840 | 62.903 | 62 | 23 | 0 | 122 | 183 | 20 | 81 | 8.60e-23 | 96.7 |
MS.gene56536.t1 | MTR_4g461080 | 56.000 | 75 | 29 | 1 | 104 | 174 | 7 | 81 | 2.51e-22 | 97.1 |
MS.gene56536.t1 | MTR_7g059400 | 71.154 | 52 | 15 | 0 | 124 | 175 | 78 | 129 | 3.56e-22 | 97.8 |
MS.gene56536.t1 | MTR_4g089095 | 70.370 | 54 | 15 | 1 | 124 | 177 | 52 | 104 | 7.44e-22 | 95.9 |
MS.gene56536.t1 | MTR_7g024670 | 72.549 | 51 | 14 | 0 | 124 | 174 | 79 | 129 | 8.55e-22 | 97.1 |
MS.gene56536.t1 | MTR_2g013370 | 67.857 | 56 | 17 | 1 | 122 | 177 | 46 | 100 | 9.60e-22 | 95.1 |
MS.gene56536.t1 | MTR_4g089095 | 70.370 | 54 | 15 | 1 | 124 | 177 | 18 | 70 | 9.70e-22 | 94.7 |
MS.gene56536.t1 | MTR_3g090430 | 59.155 | 71 | 27 | 2 | 107 | 175 | 34 | 104 | 1.03e-21 | 96.3 |
MS.gene56536.t1 | MTR_5g031440 | 63.636 | 55 | 20 | 0 | 118 | 172 | 39 | 93 | 1.93e-21 | 95.5 |
MS.gene56536.t1 | MTR_2g014170 | 71.429 | 49 | 14 | 0 | 122 | 170 | 45 | 93 | 2.01e-21 | 95.1 |
MS.gene56536.t1 | MTR_3g077750 | 61.290 | 62 | 23 | 1 | 112 | 172 | 50 | 111 | 3.41e-21 | 94.7 |
MS.gene56536.t1 | MTR_2g014060 | 70.000 | 50 | 15 | 0 | 124 | 173 | 27 | 76 | 3.75e-21 | 94.7 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene56536.t1 | AT3G47500 | 40.408 | 490 | 224 | 17 | 1 | 466 | 2 | 447 | 6.86e-85 | 268 |
MS.gene56536.t1 | AT5G39660 | 37.403 | 516 | 208 | 17 | 4 | 465 | 1 | 455 | 2.62e-80 | 256 |
MS.gene56536.t1 | AT5G39660 | 37.403 | 516 | 208 | 17 | 4 | 465 | 1 | 455 | 2.62e-80 | 256 |
MS.gene56536.t1 | AT5G39660 | 37.403 | 516 | 208 | 17 | 4 | 465 | 1 | 455 | 2.62e-80 | 256 |
MS.gene56536.t1 | AT5G62430 | 41.361 | 382 | 111 | 15 | 89 | 466 | 25 | 297 | 1.41e-64 | 211 |
MS.gene56536.t1 | AT1G69570 | 32.985 | 479 | 223 | 17 | 1 | 465 | 1 | 395 | 5.68e-48 | 170 |
MS.gene56536.t1 | AT1G26790 | 32.265 | 468 | 210 | 17 | 1 | 465 | 7 | 370 | 3.63e-47 | 167 |
MS.gene56536.t1 | AT1G29160 | 88.333 | 60 | 7 | 0 | 116 | 175 | 56 | 115 | 2.41e-35 | 129 |
MS.gene56536.t1 | AT2G34140 | 52.727 | 110 | 52 | 0 | 66 | 175 | 2 | 111 | 4.73e-34 | 126 |
MS.gene56536.t1 | AT5G60200 | 37.931 | 174 | 99 | 4 | 118 | 288 | 51 | 218 | 2.63e-27 | 110 |
MS.gene56536.t1 | AT4G24060 | 61.538 | 65 | 25 | 0 | 111 | 175 | 42 | 106 | 2.63e-24 | 103 |
MS.gene56536.t1 | AT1G51700 | 53.086 | 81 | 31 | 1 | 100 | 180 | 18 | 91 | 2.69e-24 | 100 |
MS.gene56536.t1 | AT3G55370 | 43.243 | 111 | 49 | 2 | 118 | 217 | 72 | 179 | 3.82e-24 | 103 |
MS.gene56536.t1 | AT3G55370 | 43.243 | 111 | 49 | 2 | 118 | 217 | 72 | 179 | 4.52e-24 | 103 |
MS.gene56536.t1 | AT5G60850 | 72.222 | 54 | 15 | 0 | 122 | 175 | 51 | 104 | 4.72e-24 | 102 |
MS.gene56536.t1 | AT2G28810 | 46.078 | 102 | 49 | 2 | 78 | 173 | 27 | 128 | 5.02e-24 | 102 |
MS.gene56536.t1 | AT3G55370 | 67.241 | 58 | 19 | 0 | 118 | 175 | 117 | 174 | 5.79e-24 | 103 |
MS.gene56536.t1 | AT3G50410 | 68.421 | 57 | 18 | 0 | 122 | 178 | 30 | 86 | 6.70e-24 | 100 |
MS.gene56536.t1 | AT2G28810 | 46.078 | 102 | 49 | 2 | 78 | 173 | 44 | 145 | 7.25e-24 | 102 |
MS.gene56536.t1 | AT1G21340 | 48.936 | 94 | 37 | 3 | 124 | 216 | 40 | 123 | 9.31e-24 | 100 |
MS.gene56536.t1 | AT2G37590 | 57.576 | 66 | 28 | 0 | 110 | 175 | 77 | 142 | 1.19e-23 | 101 |
MS.gene56536.t1 | AT1G64620 | 55.128 | 78 | 34 | 1 | 93 | 170 | 21 | 97 | 1.50e-23 | 102 |
MS.gene56536.t1 | AT3G61850 | 60.938 | 64 | 25 | 0 | 112 | 175 | 52 | 115 | 1.81e-23 | 100 |
MS.gene56536.t1 | AT3G61850 | 60.938 | 64 | 25 | 0 | 112 | 175 | 52 | 115 | 1.81e-23 | 100 |
MS.gene56536.t1 | AT3G61850 | 58.824 | 68 | 28 | 0 | 112 | 179 | 64 | 131 | 2.20e-23 | 100 |
MS.gene56536.t1 | AT3G61850 | 60.938 | 64 | 25 | 0 | 112 | 175 | 52 | 115 | 3.12e-23 | 100 |
MS.gene56536.t1 | AT3G61850 | 58.824 | 68 | 28 | 0 | 112 | 179 | 64 | 131 | 3.56e-23 | 100 |
MS.gene56536.t1 | AT3G21270 | 71.698 | 53 | 15 | 0 | 122 | 174 | 29 | 81 | 3.91e-23 | 97.4 |
MS.gene56536.t1 | AT2G28510 | 67.797 | 59 | 19 | 0 | 124 | 182 | 50 | 108 | 6.90e-23 | 98.6 |
MS.gene56536.t1 | AT1G07640 | 69.811 | 53 | 16 | 0 | 122 | 174 | 21 | 73 | 7.89e-23 | 98.2 |
MS.gene56536.t1 | AT3G45610 | 57.143 | 63 | 27 | 0 | 118 | 180 | 36 | 98 | 8.52e-23 | 97.4 |
MS.gene56536.t1 | AT1G28310 | 70.370 | 54 | 16 | 0 | 122 | 175 | 27 | 80 | 9.41e-23 | 99.0 |
MS.gene56536.t1 | AT1G07640 | 69.811 | 53 | 16 | 0 | 122 | 174 | 77 | 129 | 1.29e-22 | 99.0 |
MS.gene56536.t1 | AT1G28310 | 47.475 | 99 | 43 | 2 | 79 | 175 | 13 | 104 | 1.54e-22 | 98.6 |
MS.gene56536.t1 | AT1G07640 | 69.811 | 53 | 16 | 0 | 122 | 174 | 85 | 137 | 1.64e-22 | 98.6 |
MS.gene56536.t1 | AT5G02460 | 57.746 | 71 | 27 | 1 | 108 | 175 | 78 | 148 | 1.84e-22 | 99.4 |
MS.gene56536.t1 | AT5G66940 | 60.000 | 60 | 24 | 0 | 122 | 181 | 32 | 91 | 2.45e-22 | 95.5 |
MS.gene56536.t1 | AT5G65590 | 54.930 | 71 | 32 | 0 | 105 | 175 | 24 | 94 | 3.33e-22 | 97.4 |
MS.gene56536.t1 | AT4G00940 | 56.757 | 74 | 27 | 1 | 109 | 177 | 50 | 123 | 4.50e-22 | 96.7 |
MS.gene56536.t1 | AT4G00940 | 56.757 | 74 | 27 | 1 | 109 | 177 | 50 | 123 | 4.50e-22 | 96.7 |
MS.gene56536.t1 | AT4G00940 | 56.757 | 74 | 27 | 1 | 109 | 177 | 50 | 123 | 4.50e-22 | 96.7 |
MS.gene56536.t1 | AT1G47655 | 71.429 | 49 | 14 | 0 | 122 | 170 | 29 | 77 | 7.47e-22 | 94.0 |
MS.gene56536.t1 | AT3G52440 | 48.936 | 94 | 40 | 3 | 93 | 180 | 11 | 102 | 9.76e-22 | 95.1 |
MS.gene56536.t1 | AT4G38000 | 62.500 | 56 | 20 | 1 | 121 | 176 | 40 | 94 | 2.75e-21 | 93.2 |
MS.gene56536.t1 | AT3G52440 | 64.912 | 57 | 20 | 0 | 124 | 180 | 27 | 83 | 2.88e-21 | 93.2 |
MS.gene56536.t1 | AT2G46590 | 60.656 | 61 | 22 | 1 | 109 | 169 | 57 | 115 | 3.47e-21 | 95.1 |
MS.gene56536.t1 | AT2G46590 | 60.656 | 61 | 22 | 1 | 109 | 169 | 69 | 127 | 3.73e-21 | 95.1 |
MS.gene56536.t1 | AT4G21050 | 43.564 | 101 | 55 | 1 | 115 | 213 | 17 | 117 | 6.46e-21 | 91.3 |
MS.gene56536.t1 | AT5G62940 | 69.388 | 49 | 15 | 0 | 124 | 172 | 75 | 123 | 9.83e-20 | 90.9 |
MS.gene56536.t1 | AT4G21040 | 47.297 | 74 | 37 | 1 | 102 | 175 | 7 | 78 | 1.14e-17 | 82.4 |
MS.gene56536.t1 | AT4G21080 | 57.692 | 52 | 22 | 0 | 124 | 175 | 27 | 78 | 1.54e-16 | 79.7 |
MS.gene56536.t1 | AT4G21030 | 59.091 | 44 | 18 | 0 | 124 | 167 | 23 | 66 | 4.07e-11 | 62.8 |
Find 123 sgRNAs with CRISPR-Local
Find 185 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CTCAGTTCTGTCCCGACTTT+GGG | 0.197222 | 4.4:-30663948 | MS.gene56536:CDS |
CCCTAATGGATTACATAGTT+TGG | 0.197772 | 4.4:-30664423 | MS.gene56536:CDS |
GTAATTAGTTCTTTCCTTGA+TGG | 0.235655 | 4.4:+30664863 | None:intergenic |
CCAAACTATGTAATCCATTA+GGG | 0.240822 | 4.4:+30664423 | None:intergenic |
AGTAACTCCACCTGCATATT+GGG | 0.244547 | 4.4:-30664045 | MS.gene56536:CDS |
TCATCAAATCTAAGTGTCTT+TGG | 0.276528 | 4.4:+30663828 | None:intergenic |
CAATATGCAGGTGGAGTTAC+TGG | 0.285499 | 4.4:+30664047 | None:intergenic |
GTAAGAAATGTCAAAGATAC+TGG | 0.307217 | 4.4:-30664562 | MS.gene56536:CDS |
ATTGTTGAAGTAACAAAATT+TGG | 0.309323 | 4.4:+30664613 | None:intergenic |
CCCAAACTATGTAATCCATT+AGG | 0.311917 | 4.4:+30664422 | None:intergenic |
ATTCCATGGATAAGGCAAAA+AGG | 0.312423 | 4.4:+30664127 | None:intergenic |
CAGTAACTCCACCTGCATAT+TGG | 0.313645 | 4.4:-30664046 | MS.gene56536:CDS |
GCTAAACTTAATTCCCCTAA+TGG | 0.325757 | 4.4:-30664437 | MS.gene56536:CDS |
GCCTCCTCCATTGAGAGAAT+TGG | 0.332869 | 4.4:+30663746 | None:intergenic |
CCTAATGGATTACATAGTTT+GGG | 0.335592 | 4.4:-30664422 | MS.gene56536:CDS |
TAGAATGCTAATGGATAGTT+TGG | 0.337503 | 4.4:+30664074 | None:intergenic |
GTTTCAGCTGATGGAGTCTT+AGG | 0.353075 | 4.4:+30664758 | None:intergenic |
ATCATGCAAGTTCGTATAGT+AGG | 0.370122 | 4.4:-30664289 | MS.gene56536:CDS |
TCTCAGTTCTGTCCCGACTT+TGG | 0.371870 | 4.4:-30663949 | MS.gene56536:CDS |
AAAGGCCACACCGGCACAAA+TGG | 0.375943 | 4.4:-30664206 | MS.gene56536:CDS |
GACCCTGCGATAAAGCTCTT+TGG | 0.376470 | 4.4:-30666125 | MS.gene56536:CDS |
ACAAATGGGTTGGTAGATAA+AGG | 0.391250 | 4.4:-30664191 | MS.gene56536:CDS |
AGGGAAAATGATCACTCAAT+TGG | 0.410885 | 4.4:-30664269 | MS.gene56536:CDS |
CATCAAATCTAAGTGTCTTT+GGG | 0.411049 | 4.4:+30663829 | None:intergenic |
TGATTAACAGAAGCACTTCC+TGG | 0.414702 | 4.4:+30663984 | None:intergenic |
GAACTCCTTGCAGCTTCACT+TGG | 0.415659 | 4.4:+30663804 | None:intergenic |
AGAGGGAGATGAAGAGTCAT+TGG | 0.419013 | 4.4:+30666067 | None:intergenic |
AGATTTCAATAACGAATTCT+CGG | 0.425048 | 4.4:+30664736 | None:intergenic |
TTGGTAGATAAAGGAGTTGA+AGG | 0.425049 | 4.4:-30664182 | MS.gene56536:CDS |
GGATTACATAGTTTGGGAAA+TGG | 0.427090 | 4.4:-30664416 | MS.gene56536:CDS |
ACTCAAAATTGTGTGTCAAA+TGG | 0.434475 | 4.4:-30664317 | MS.gene56536:CDS |
TGTATTGCAGAGGTGAATTC+TGG | 0.445396 | 4.4:+30666035 | None:intergenic |
AGTTCATTGTGGTCAAAGCT+TGG | 0.456620 | 4.4:-30663786 | MS.gene56536:CDS |
TTGAGTGTTTCCCCAAAGTC+GGG | 0.458025 | 4.4:+30663937 | None:intergenic |
ACTGGAGTATAGAATGCTAA+TGG | 0.468260 | 4.4:+30664065 | None:intergenic |
GTGATTCATGTCCTTTACCT+TGG | 0.468280 | 4.4:+30663704 | None:intergenic |
GTTCATTGTGGTCAAAGCTT+GGG | 0.469560 | 4.4:-30663785 | MS.gene56536:CDS |
GACAAAGCCAATTCTCTCAA+TGG | 0.470994 | 4.4:-30663753 | MS.gene56536:CDS |
TGGATAGTTTGGTGGACAAA+AGG | 0.471372 | 4.4:+30664085 | None:intergenic |
GGAGATGAAGAGTCATTGGC+AGG | 0.477484 | 4.4:+30666071 | None:intergenic |
AATGGAGGAGGCATGTTCAA+TGG | 0.477902 | 4.4:-30663735 | MS.gene56536:CDS |
GAATTCTCGGTTTCAGCTGA+TGG | 0.478162 | 4.4:+30664749 | None:intergenic |
ATGCTATTGCATCGCGGGCA+TGG | 0.486276 | 4.4:+30664641 | None:intergenic |
GAATTCTGGTGGAGAAGAAG+AGG | 0.486452 | 4.4:+30666049 | None:intergenic |
ATTGCAGAATTCCATGGATA+AGG | 0.486834 | 4.4:+30664119 | None:intergenic |
GAATTAAGTTTAGCACCCTC+TGG | 0.491397 | 4.4:+30664446 | None:intergenic |
TTGCGGCGACCAGCTCCAAC+AGG | 0.495368 | 4.4:+30664512 | None:intergenic |
CCGCGATAAAGCCGCAGGGT+TGG | 0.504467 | 4.4:+30663653 | None:intergenic |
AATGATCACTCAATTGGAGT+TGG | 0.507132 | 4.4:-30664263 | MS.gene56536:CDS |
AACTCCTTGCAGCTTCACTT+GGG | 0.509294 | 4.4:+30663805 | None:intergenic |
TCAAATTCATCAGATAGAAA+AGG | 0.510956 | 4.4:-30664224 | MS.gene56536:CDS |
AAGGCCACACCGGCACAAAT+GGG | 0.516822 | 4.4:-30664205 | MS.gene56536:CDS |
GGCATACAACCCCAATATGC+AGG | 0.516977 | 4.4:+30664035 | None:intergenic |
TGGATTTCAGTCCAAGGTAA+AGG | 0.518064 | 4.4:-30663715 | MS.gene56536:CDS |
CAATTAGGTTTCCTCATGGA+AGG | 0.522646 | 4.4:+30663623 | None:intergenic |
CTTGAGTGTTTCCCCAAAGT+CGG | 0.525777 | 4.4:+30663936 | None:intergenic |
TGTCAAAGATACTGGACTGC+AGG | 0.528621 | 4.4:-30664554 | MS.gene56536:CDS |
ATCTACCAACCCATTTGTGC+CGG | 0.532135 | 4.4:+30664196 | None:intergenic |
TGTCCATGCTATTGCATCGC+GGG | 0.535971 | 4.4:+30664636 | None:intergenic |
CGAGACCGCGATAAAGCCGC+AGG | 0.536771 | 4.4:+30663648 | None:intergenic |
CGACTTTGGGGAAACACTCA+AGG | 0.540052 | 4.4:-30663935 | MS.gene56536:CDS |
TCATGCAAGTTCGTATAGTA+GGG | 0.541345 | 4.4:-30664288 | MS.gene56536:CDS |
TTCACAATTAGGTTTCCTCA+TGG | 0.553418 | 4.4:+30663619 | None:intergenic |
ATCCTCAGTGGTTTGTTGCG+AGG | 0.554021 | 4.4:+30664823 | None:intergenic |
AATGCTAATGGATAGTTTGG+TGG | 0.554354 | 4.4:+30664077 | None:intergenic |
GAGACACATGGTATATTCCA+TGG | 0.554398 | 4.4:+30664008 | None:intergenic |
CTTCCAAAGAGCTTTATCGC+AGG | 0.556819 | 4.4:+30666122 | None:intergenic |
ACAATGAGAAATGTTCCTGT+TGG | 0.557862 | 4.4:-30664527 | MS.gene56536:CDS |
TCAGCTGATGGAGTCTTAGG+AGG | 0.562404 | 4.4:+30664761 | None:intergenic |
TAGTTTGGTGGACAAAAGGT+AGG | 0.562573 | 4.4:+30664089 | None:intergenic |
AATTCTGGTGGAGAAGAAGA+GGG | 0.562827 | 4.4:+30666050 | None:intergenic |
GCCAATTCTCTCAATGGAGG+AGG | 0.563194 | 4.4:-30663747 | MS.gene56536:CDS |
TTCCAAAGAGCTTTATCGCA+GGG | 0.567023 | 4.4:+30666123 | None:intergenic |
GAATATGTTGCAACTGAGGA+GGG | 0.570048 | 4.4:+30664156 | None:intergenic |
GGAGGCATTGCAGAATTCCA+TGG | 0.572249 | 4.4:+30664113 | None:intergenic |
TTTGGTGGACAAAAGGTAGG+AGG | 0.574664 | 4.4:+30664092 | None:intergenic |
GGAATATGTTGCAACTGAGG+AGG | 0.574863 | 4.4:+30664155 | None:intergenic |
AGAAATGTTCCTGTTGGAGC+TGG | 0.575931 | 4.4:-30664521 | MS.gene56536:CDS |
CTTGGAATATGTTGCAACTG+AGG | 0.581444 | 4.4:+30664152 | None:intergenic |
TTGGGGAAACACTCAAGGGA+TGG | 0.586619 | 4.4:-30663930 | MS.gene56536:CDS |
GGGGTTGTATGCCACCTCCA+TGG | 0.588317 | 4.4:-30664025 | MS.gene56536:CDS |
CATGGTATATTCCATGGAGG+TGG | 0.595774 | 4.4:+30664014 | None:intergenic |
GGTGGACAAAAGGTAGGAGG+AGG | 0.603448 | 4.4:+30664095 | None:intergenic |
CCAACCCATTTGTGCCGGTG+TGG | 0.605033 | 4.4:+30664201 | None:intergenic |
CGACATTTGATAATTCCAGA+GGG | 0.606272 | 4.4:-30664461 | MS.gene56536:CDS |
TCAGTTCTGTCCCGACTTTG+GGG | 0.606745 | 4.4:-30663947 | MS.gene56536:CDS |
CCACACCGGCACAAATGGGT+TGG | 0.611096 | 4.4:-30664201 | MS.gene56536:CDS |
GTAACTCCACCTGCATATTG+GGG | 0.611433 | 4.4:-30664044 | MS.gene56536:CDS |
CAAAGATACTGGACTGCAGG+AGG | 0.611856 | 4.4:-30664551 | MS.gene56536:CDS |
GTTCAATGGATTTCAGTCCA+AGG | 0.615097 | 4.4:-30663721 | MS.gene56536:CDS |
CTGCGATAAAGCTCTTTGGA+AGG | 0.619750 | 4.4:-30666121 | MS.gene56536:CDS |
AATATACCATGTGTCTCACC+AGG | 0.620306 | 4.4:-30664002 | MS.gene56536:CDS |
GATGTTCAATACAGAAGCCA+TGG | 0.623380 | 4.4:+30664349 | None:intergenic |
GAGATGAAGAGTCATTGGCA+GGG | 0.625244 | 4.4:+30666072 | None:intergenic |
TCGACATTTGATAATTCCAG+AGG | 0.625580 | 4.4:-30664462 | MS.gene56536:CDS |
TCATTGGCAGGGATGATCAG+TGG | 0.630276 | 4.4:+30666083 | None:intergenic |
GCACTTCCTGGTGAGACACA+TGG | 0.630353 | 4.4:+30663996 | None:intergenic |
AGTTTCATGCTGTATTGCAG+AGG | 0.631365 | 4.4:+30666025 | None:intergenic |
GACTTTGGGGAAACACTCAA+GGG | 0.631484 | 4.4:-30663934 | MS.gene56536:CDS |
ATGACCCAAGTGAAGCTGCA+AGG | 0.632038 | 4.4:-30663809 | MS.gene56536:CDS |
GTGTCCATGCTATTGCATCG+CGG | 0.634519 | 4.4:+30664635 | None:intergenic |
ATGCCCGCGATGCAATAGCA+TGG | 0.635421 | 4.4:-30664639 | MS.gene56536:CDS |
CCAACCCTGCGGCTTTATCG+CGG | 0.637960 | 4.4:-30663653 | MS.gene56536:CDS |
GGGATGATCAGTGGAAGAAG+CGG | 0.640321 | 4.4:+30666092 | None:intergenic |
GAGAGCTCTTAAATCCTCAG+TGG | 0.645204 | 4.4:+30664811 | None:intergenic |
GCAGGGTTGGCATACATCAG+CGG | 0.645757 | 4.4:+30663666 | None:intergenic |
CAAACTATGTAATCCATTAG+GGG | 0.651674 | 4.4:+30664424 | None:intergenic |
TCAGATAGAAAAGGCCACAC+CGG | 0.654081 | 4.4:-30664215 | MS.gene56536:CDS |
CTAATTACAGCACAAGACGA+TGG | 0.658149 | 4.4:-30664848 | MS.gene56536:CDS |
AAAGCCAATTCTCTCAATGG+AGG | 0.662101 | 4.4:-30663750 | MS.gene56536:CDS |
TGCAATACAGCATGAAACTG+AGG | 0.664237 | 4.4:-30666021 | MS.gene56536:intron |
GCCATGGTGTTACAAAGCGG+AGG | 0.666467 | 4.4:+30664365 | None:intergenic |
ATTGCAGAGGTGAATTCTGG+TGG | 0.675104 | 4.4:+30666038 | None:intergenic |
TCCTCCGCTTTGTAACACCA+TGG | 0.687107 | 4.4:-30664366 | MS.gene56536:CDS |
AAGCTGCAAGGAGTTCATTG+TGG | 0.697169 | 4.4:-30663797 | MS.gene56536:CDS |
GGTAAAGGACATGAATCACA+CGG | 0.721107 | 4.4:-30663700 | MS.gene56536:CDS |
ATACAACCCCAATATGCAGG+TGG | 0.724114 | 4.4:+30664038 | None:intergenic |
GAAGCCATGGTGTTACAAAG+CGG | 0.731105 | 4.4:+30664362 | None:intergenic |
GAGACCGCGATAAAGCCGCA+GGG | 0.731318 | 4.4:+30663649 | None:intergenic |
GCGGTCTCGTACCTTCCATG+AGG | 0.732623 | 4.4:-30663634 | MS.gene56536:CDS |
ACACATGGTATATTCCATGG+AGG | 0.757531 | 4.4:+30664011 | None:intergenic |
GCTGATGTATGCCAACCCTG+CGG | 0.770728 | 4.4:-30663664 | MS.gene56536:CDS |
AGCCTCGCAACAAACCACTG+AGG | 0.809905 | 4.4:-30664825 | MS.gene56536:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | ATTTATATAAAAATTGTTCA+TGG | - | chr4.4:30664392-30664411 | MS.gene56536:CDS | 10.0% |
!! | TATATAAAAATAGCAGAAAA+GGG | + | chr4.4:30664630-30664649 | None:intergenic | 15.0% |
!! | TTATATAAAAATAGCAGAAA+AGG | + | chr4.4:30664631-30664650 | None:intergenic | 15.0% |
!!! | CAATTATCAATTTTTTGTTT+TGG | - | chr4.4:30664143-30664162 | MS.gene56536:CDS | 15.0% |
!!! | TTAATCATATTCATTGTTTT+AGG | - | chr4.4:30664878-30664897 | MS.gene56536:intron | 15.0% |
!! | AATTAACTGCTTAAGAAAAA+TGG | + | chr4.4:30663859-30663878 | None:intergenic | 20.0% |
!! | ATTAACTGCTTAAGAAAAAT+GGG | + | chr4.4:30663858-30663877 | None:intergenic | 20.0% |
!! | ATTGTTGAAGTAACAAAATT+TGG | + | chr4.4:30665156-30665175 | None:intergenic | 20.0% |
!! | TAAAACTAATCTATGGTATT+TGG | + | chr4.4:30664441-30664460 | None:intergenic | 20.0% |
!! | TTAAGCAGTTAATTGTTAAT+GGG | - | chr4.4:30663865-30663884 | MS.gene56536:CDS | 20.0% |
!!! | AATACCATAGATTAGTTTTA+TGG | - | chr4.4:30664441-30664460 | MS.gene56536:CDS | 20.0% |
!!! | TTGAATCTTTTATTAAGTTG+TGG | - | chr4.4:30664001-30664020 | MS.gene56536:CDS | 20.0% |
!!! | TTTGTTTTTTACTTCTATTG+AGG | - | chr4.4:30664794-30664813 | MS.gene56536:CDS | 20.0% |
! | AAATTGGATCGAATTTATTC+TGG | - | chr4.4:30664054-30664073 | MS.gene56536:CDS | 25.0% |
! | ACATTTCTTACAAAAATGAC+GGG | + | chr4.4:30665195-30665214 | None:intergenic | 25.0% |
! | AGATTTCAATAACGAATTCT+CGG | + | chr4.4:30665033-30665052 | None:intergenic | 25.0% |
! | CTTAAGCAGTTAATTGTTAA+TGG | - | chr4.4:30663864-30663883 | MS.gene56536:CDS | 25.0% |
! | GACATTTCTTACAAAAATGA+CGG | + | chr4.4:30665196-30665215 | None:intergenic | 25.0% |
! | TAACCAAAAAACTTCAATCA+AGG | + | chr4.4:30664242-30664261 | None:intergenic | 25.0% |
! | TCAAATTCATCAGATAGAAA+AGG | - | chr4.4:30665542-30665561 | MS.gene56536:intron | 25.0% |
!! | CAAAATAGTTTAGTTCAAGT+CGG | + | chr4.4:30664274-30664293 | None:intergenic | 25.0% |
!! | TAGATAAGTTTTTGTTCTTG+CGG | + | chr4.4:30665274-30665293 | None:intergenic | 25.0% |
!! | TTTTGATGTCAATTGAATTG+AGG | - | chr4.4:30663905-30663924 | MS.gene56536:CDS | 25.0% |
!!! | CTGCATATAATTTTAGTATG+AGG | + | chr4.4:30664666-30664685 | None:intergenic | 25.0% |
!!! | TTTATGGACTGTTAGTTTTT+AGG | - | chr4.4:30664457-30664476 | MS.gene56536:CDS | 25.0% |
!!! | TTTCTTCAGAGTTTTTTCTT+CGG | + | chr4.4:30665090-30665109 | None:intergenic | 25.0% |
AACTTACTGTGTACACAAAA+GGG | + | chr4.4:30664845-30664864 | None:intergenic | 30.0% | |
AATTATGTTGTGATGTCACA+AGG | + | chr4.4:30664372-30664391 | None:intergenic | 30.0% | |
ACTCAAAATTGTGTGTCAAA+TGG | - | chr4.4:30665449-30665468 | MS.gene56536:intron | 30.0% | |
ATTGTTCATGGACATATTAC+TGG | - | chr4.4:30664404-30664423 | MS.gene56536:CDS | 30.0% | |
CAAACTATGTAATCCATTAG+GGG | + | chr4.4:30665345-30665364 | None:intergenic | 30.0% | |
CAGTCCATAAAACTAATCTA+TGG | + | chr4.4:30664448-30664467 | None:intergenic | 30.0% | |
CATCAAATCTAAGTGTCTTT+GGG | + | chr4.4:30665940-30665959 | None:intergenic | 30.0% | |
CATTTCTTACAAAAATGACG+GGG | + | chr4.4:30665194-30665213 | None:intergenic | 30.0% | |
CCAAACTATGTAATCCATTA+GGG | + | chr4.4:30665346-30665365 | None:intergenic | 30.0% | |
GAAAAAACCAAAGCAAAACA+AGG | + | chr4.4:30664124-30664143 | None:intergenic | 30.0% | |
GCATACGTGTATAAAAACAT+TGG | + | chr4.4:30664725-30664744 | None:intergenic | 30.0% | |
GTAAGAAATGTCAAAGATAC+TGG | - | chr4.4:30665204-30665223 | MS.gene56536:intron | 30.0% | |
TAACTTACTGTGTACACAAA+AGG | + | chr4.4:30664846-30664865 | None:intergenic | 30.0% | |
TCAATCATATGAAACCTTCA+TGG | + | chr4.4:30663777-30663796 | None:intergenic | 30.0% | |
TCATCAAATCTAAGTGTCTT+TGG | + | chr4.4:30665941-30665960 | None:intergenic | 30.0% | |
TCTATGAGAATCCATATATG+AGG | - | chr4.4:30664553-30664572 | MS.gene56536:CDS | 30.0% | |
! | AATTTTAAGCGCAAAGTGAA+AGG | + | chr4.4:30664533-30664552 | None:intergenic | 30.0% |
! | CGACTTGAACTAAACTATTT+TGG | - | chr4.4:30664272-30664291 | MS.gene56536:CDS | 30.0% |
! | GTAATTAGTTCTTTCCTTGA+TGG | + | chr4.4:30664906-30664925 | None:intergenic | 30.0% |
! | TAGAATGCTAATGGATAGTT+TGG | + | chr4.4:30665695-30665714 | None:intergenic | 30.0% |
!! | CCTAATGGATTACATAGTTT+GGG | - | chr4.4:30665344-30665363 | MS.gene56536:intron | 30.0% |
!! | TCATTTTCAGGCTTTTCTTT+TGG | + | chr4.4:30665887-30665906 | None:intergenic | 30.0% |
!! | TGTTTTTATACACGTATGCT+CGG | - | chr4.4:30664753-30664772 | MS.gene56536:CDS | 30.0% |
!!! | TGTTATTTTGACACAGAACA+AGG | + | chr4.4:30664325-30664344 | None:intergenic | 30.0% |
!!! | TTGCCTTGATTGAAGTTTTT+TGG | - | chr4.4:30664236-30664255 | MS.gene56536:CDS | 30.0% |
AATGATCACTCAATTGGAGT+TGG | - | chr4.4:30665503-30665522 | MS.gene56536:intron | 35.0% | |
ACAATGAGAAATGTTCCTGT+TGG | - | chr4.4:30665239-30665258 | MS.gene56536:intron | 35.0% | |
ACAGAACAAGGACATGAATA+TGG | + | chr4.4:30664313-30664332 | None:intergenic | 35.0% | |
ACTGCTTAAGAAAAATGGGT+TGG | + | chr4.4:30663854-30663873 | None:intergenic | 35.0% | |
ACTGGAGTATAGAATGCTAA+TGG | + | chr4.4:30665704-30665723 | None:intergenic | 35.0% | |
AGGGAAAATGATCACTCAAT+TGG | - | chr4.4:30665497-30665516 | MS.gene56536:intron | 35.0% | |
ATCATGCAAGTTCGTATAGT+AGG | - | chr4.4:30665477-30665496 | MS.gene56536:intron | 35.0% | |
ATTCCATGGATAAGGCAAAA+AGG | + | chr4.4:30665642-30665661 | None:intergenic | 35.0% | |
ATTCGATCCAATTTCACTGA+TGG | + | chr4.4:30664048-30664067 | None:intergenic | 35.0% | |
ATTGCAGAATTCCATGGATA+AGG | + | chr4.4:30665650-30665669 | None:intergenic | 35.0% | |
CCCAAACTATGTAATCCATT+AGG | + | chr4.4:30665347-30665366 | None:intergenic | 35.0% | |
GCTAAACTTAATTCCCCTAA+TGG | - | chr4.4:30665329-30665348 | MS.gene56536:intron | 35.0% | |
GGAATTGCTGAAATTCTCAA+TGG | - | chr4.4:30663926-30663945 | MS.gene56536:CDS | 35.0% | |
GGATTACATAGTTTGGGAAA+TGG | - | chr4.4:30665350-30665369 | MS.gene56536:intron | 35.0% | |
TATTGTAGGAGACAAGAGTA+AGG | + | chr4.4:30664483-30664502 | None:intergenic | 35.0% | |
TCATGCAAGTTCGTATAGTA+GGG | - | chr4.4:30665478-30665497 | MS.gene56536:intron | 35.0% | |
TGTGGCTCAAATTCATTATG+TGG | - | chr4.4:30664019-30664038 | MS.gene56536:CDS | 35.0% | |
TTCCATGGATAAGGCAAAAA+GGG | + | chr4.4:30665641-30665660 | None:intergenic | 35.0% | |
TTCGATCCAATTTCACTGAT+GGG | + | chr4.4:30664047-30664066 | None:intergenic | 35.0% | |
TTGGTAGATAAAGGAGTTGA+AGG | - | chr4.4:30665584-30665603 | MS.gene56536:intron | 35.0% | |
! | AATGCTAATGGATAGTTTGG+TGG | + | chr4.4:30665692-30665711 | None:intergenic | 35.0% |
! | CGACATTTGATAATTCCAGA+GGG | - | chr4.4:30665305-30665324 | MS.gene56536:intron | 35.0% |
! | TCGACATTTGATAATTCCAG+AGG | - | chr4.4:30665304-30665323 | MS.gene56536:intron | 35.0% |
! | TTCTTTTGGTGAATTGACTG+AGG | + | chr4.4:30665873-30665892 | None:intergenic | 35.0% |
!! | ACAAATGGGTTGGTAGATAA+AGG | - | chr4.4:30665575-30665594 | MS.gene56536:intron | 35.0% |
!! | CCCTAATGGATTACATAGTT+TGG | - | chr4.4:30665343-30665362 | MS.gene56536:intron | 35.0% |
!! | GTGCTATTGTGTTCATTTTC+AGG | + | chr4.4:30665899-30665918 | None:intergenic | 35.0% |
!!! | CATTGTTTTAGGAACCATCA+AGG | - | chr4.4:30664889-30664908 | MS.gene56536:intron | 35.0% |
!!! | TGGTTTACCTTGTTTTGCTT+TGG | - | chr4.4:30664114-30664133 | MS.gene56536:CDS | 35.0% |
AAAGCCAATTCTCTCAATGG+AGG | - | chr4.4:30666016-30666035 | MS.gene56536:intron | 40.0% | |
AATATACCATGTGTCTCACC+AGG | - | chr4.4:30665764-30665783 | MS.gene56536:intron | 40.0% | |
AATTCTGGTGGAGAAGAAGA+GGG | + | chr4.4:30663719-30663738 | None:intergenic | 40.0% | |
ACACATGGTATATTCCATGG+AGG | + | chr4.4:30665758-30665777 | None:intergenic | 40.0% | |
AGTAACTCCACCTGCATATT+GGG | - | chr4.4:30665721-30665740 | MS.gene56536:intron | 40.0% | |
AGTTCATTGTGGTCAAAGCT+TGG | - | chr4.4:30665980-30665999 | MS.gene56536:intron | 40.0% | |
AGTTTCATGCTGTATTGCAG+AGG | + | chr4.4:30663744-30663763 | None:intergenic | 40.0% | |
CTAATTACAGCACAAGACGA+TGG | - | chr4.4:30664918-30664937 | MS.gene56536:intron | 40.0% | |
CTTGGAATATGTTGCAACTG+AGG | + | chr4.4:30665617-30665636 | None:intergenic | 40.0% | |
GAATATGTTGCAACTGAGGA+GGG | + | chr4.4:30665613-30665632 | None:intergenic | 40.0% | |
GAATTAAGTTTAGCACCCTC+TGG | + | chr4.4:30665323-30665342 | None:intergenic | 40.0% | |
GACAAAGCCAATTCTCTCAA+TGG | - | chr4.4:30666013-30666032 | MS.gene56536:intron | 40.0% | |
GAGACACATGGTATATTCCA+TGG | + | chr4.4:30665761-30665780 | None:intergenic | 40.0% | |
GATGTTCAATACAGAAGCCA+TGG | + | chr4.4:30665420-30665439 | None:intergenic | 40.0% | |
GGTAAAGGACATGAATCACA+CGG | - | chr4.4:30666066-30666085 | MS.gene56536:CDS | 40.0% | |
GTGATTCATGTCCTTTACCT+TGG | + | chr4.4:30666065-30666084 | None:intergenic | 40.0% | |
GTTCATTGTGGTCAAAGCTT+GGG | - | chr4.4:30665981-30666000 | MS.gene56536:intron | 40.0% | |
TCCTACAATACTTATGCCTC+TGG | - | chr4.4:30664493-30664512 | MS.gene56536:CDS | 40.0% | |
TGACTCTGACTCCTCATATA+TGG | + | chr4.4:30664567-30664586 | None:intergenic | 40.0% | |
TGCAATACAGCATGAAACTG+AGG | - | chr4.4:30663745-30663764 | MS.gene56536:CDS | 40.0% | |
TGGATTTCAGTCCAAGGTAA+AGG | - | chr4.4:30666051-30666070 | MS.gene56536:CDS | 40.0% | |
TGTATTGCAGAGGTGAATTC+TGG | + | chr4.4:30663734-30663753 | None:intergenic | 40.0% | |
TTAAGCGCAAAGTGAAAGGT+TGG | + | chr4.4:30664529-30664548 | None:intergenic | 40.0% | |
! | ACCAGAGGCATAAGTATTGT+AGG | + | chr4.4:30664497-30664516 | None:intergenic | 40.0% |
! | GTTCAATGGATTTCAGTCCA+AGG | - | chr4.4:30666045-30666064 | MS.gene56536:CDS | 40.0% |
! | TAGTTTGGTGGACAAAAGGT+AGG | + | chr4.4:30665680-30665699 | None:intergenic | 40.0% |
! | TGGATAGTTTGGTGGACAAA+AGG | + | chr4.4:30665684-30665703 | None:intergenic | 40.0% |
! | TTCCAAAGAGCTTTATCGCA+GGG | + | chr4.4:30663646-30663665 | None:intergenic | 40.0% |
!! | CGGGCATGGAATTATTTTGT+CGG | + | chr4.4:30665114-30665133 | None:intergenic | 40.0% |
!! | GGGCATGGAATTATTTTGTC+GGG | + | chr4.4:30665113-30665132 | None:intergenic | 40.0% |
!! | TGATTAACAGAAGCACTTCC+TGG | + | chr4.4:30665785-30665804 | None:intergenic | 40.0% |
AACTCCTTGCAGCTTCACTT+GGG | + | chr4.4:30665964-30665983 | None:intergenic | 45.0% | |
AAGCTGCAAGGAGTTCATTG+TGG | - | chr4.4:30665969-30665988 | MS.gene56536:intron | 45.0% | |
AGAAATGTTCCTGTTGGAGC+TGG | - | chr4.4:30665245-30665264 | MS.gene56536:intron | 45.0% | |
AGAGGGAGATGAAGAGTCAT+TGG | + | chr4.4:30663702-30663721 | None:intergenic | 45.0% | |
ATACAACCCCAATATGCAGG+TGG | + | chr4.4:30665731-30665750 | None:intergenic | 45.0% | |
ATCTACCAACCCATTTGTGC+CGG | + | chr4.4:30665573-30665592 | None:intergenic | 45.0% | |
ATTGCAGAGGTGAATTCTGG+TGG | + | chr4.4:30663731-30663750 | None:intergenic | 45.0% | |
CAATATGCAGGTGGAGTTAC+TGG | + | chr4.4:30665722-30665741 | None:intergenic | 45.0% | |
CAGTAACTCCACCTGCATAT+TGG | - | chr4.4:30665720-30665739 | MS.gene56536:intron | 45.0% | |
CATGGTATATTCCATGGAGG+TGG | + | chr4.4:30665755-30665774 | None:intergenic | 45.0% | |
CTGCGATAAAGCTCTTTGGA+AGG | - | chr4.4:30663645-30663664 | MS.gene56536:CDS | 45.0% | |
CTTGAGTGTTTCCCCAAAGT+CGG | + | chr4.4:30665833-30665852 | None:intergenic | 45.0% | |
GAATTCTCGGTTTCAGCTGA+TGG | + | chr4.4:30665020-30665039 | None:intergenic | 45.0% | |
GAATTCTGGTGGAGAAGAAG+AGG | + | chr4.4:30663720-30663739 | None:intergenic | 45.0% | |
GAGAGCTCTTAAATCCTCAG+TGG | + | chr4.4:30664958-30664977 | None:intergenic | 45.0% | |
GAGATGAAGAGTCATTGGCA+GGG | + | chr4.4:30663697-30663716 | None:intergenic | 45.0% | |
GGAATATGTTGCAACTGAGG+AGG | + | chr4.4:30665614-30665633 | None:intergenic | 45.0% | |
GGATAAGGCAAAAAGGGACT+TGG | + | chr4.4:30665635-30665654 | None:intergenic | 45.0% | |
GTAACTCCACCTGCATATTG+GGG | - | chr4.4:30665722-30665741 | MS.gene56536:intron | 45.0% | |
GTGGTTCCCATCAGTGAAAT+TGG | - | chr4.4:30664038-30664057 | MS.gene56536:CDS | 45.0% | |
GTTTCAGCTGATGGAGTCTT+AGG | + | chr4.4:30665011-30665030 | None:intergenic | 45.0% | |
TCAGATAGAAAAGGCCACAC+CGG | - | chr4.4:30665551-30665570 | MS.gene56536:intron | 45.0% | |
TGTCAAAGATACTGGACTGC+AGG | - | chr4.4:30665212-30665231 | MS.gene56536:intron | 45.0% | |
TTGAGTGTTTCCCCAAAGTC+GGG | + | chr4.4:30665832-30665851 | None:intergenic | 45.0% | |
! | AATGGAGGAGGCATGTTCAA+TGG | - | chr4.4:30666031-30666050 | MS.gene56536:CDS | 45.0% |
! | CTTCCAAAGAGCTTTATCGC+AGG | + | chr4.4:30663647-30663666 | None:intergenic | 45.0% |
! | GACTTTGGGGAAACACTCAA+GGG | - | chr4.4:30665832-30665851 | MS.gene56536:intron | 45.0% |
! | GTCCCTTTTTGCCTTATCCA+TGG | - | chr4.4:30665636-30665655 | MS.gene56536:intron | 45.0% |
! | TCTTACAAAAATGACGGGGC+TGG | + | chr4.4:30665190-30665209 | None:intergenic | 45.0% |
! | TTTGGTGGACAAAAGGTAGG+AGG | + | chr4.4:30665677-30665696 | None:intergenic | 45.0% |
!! | GAAGCCATGGTGTTACAAAG+CGG | + | chr4.4:30665407-30665426 | None:intergenic | 45.0% |
!! | ATAATATTTAATATATTATG+TGG | - | chr4.4:30664094-30664113 | MS.gene56536:CDS | 5.0% |
AACTGAGGTACGTGCCATGA+AGG | - | chr4.4:30663760-30663779 | MS.gene56536:CDS | 50.0% | |
ATGACCCAAGTGAAGCTGCA+AGG | - | chr4.4:30665957-30665976 | MS.gene56536:intron | 50.0% | |
CAAAGATACTGGACTGCAGG+AGG | - | chr4.4:30665215-30665234 | MS.gene56536:intron | 50.0% | |
CTCAGTTCTGTCCCGACTTT+GGG | - | chr4.4:30665818-30665837 | MS.gene56536:intron | 50.0% | |
GAACTCCTTGCAGCTTCACT+TGG | + | chr4.4:30665965-30665984 | None:intergenic | 50.0% | |
GACCCTGCGATAAAGCTCTT+TGG | - | chr4.4:30663641-30663660 | MS.gene56536:CDS | 50.0% | |
GCCAATTCTCTCAATGGAGG+AGG | - | chr4.4:30666019-30666038 | MS.gene56536:intron | 50.0% | |
GCCTCCTCCATTGAGAGAAT+TGG | + | chr4.4:30666023-30666042 | None:intergenic | 50.0% | |
GGAGATGAAGAGTCATTGGC+AGG | + | chr4.4:30663698-30663717 | None:intergenic | 50.0% | |
GGCATACAACCCCAATATGC+AGG | + | chr4.4:30665734-30665753 | None:intergenic | 50.0% | |
GGGATGATCAGTGGAAGAAG+CGG | + | chr4.4:30663677-30663696 | None:intergenic | 50.0% | |
GTGTCCATGCTATTGCATCG+CGG | + | chr4.4:30665134-30665153 | None:intergenic | 50.0% | |
TCAGCTGATGGAGTCTTAGG+AGG | + | chr4.4:30665008-30665027 | None:intergenic | 50.0% | |
TCAGTTCTGTCCCGACTTTG+GGG | - | chr4.4:30665819-30665838 | MS.gene56536:intron | 50.0% | |
TCATTGGCAGGGATGATCAG+TGG | + | chr4.4:30663686-30663705 | None:intergenic | 50.0% | |
TCCTCCGCTTTGTAACACCA+TGG | - | chr4.4:30665400-30665419 | MS.gene56536:intron | 50.0% | |
TCTCAGTTCTGTCCCGACTT+TGG | - | chr4.4:30665817-30665836 | MS.gene56536:intron | 50.0% | |
TGTCCATGCTATTGCATCGC+GGG | + | chr4.4:30665133-30665152 | None:intergenic | 50.0% | |
TTGGGGAAACACTCAAGGGA+TGG | - | chr4.4:30665836-30665855 | MS.gene56536:intron | 50.0% | |
! | CGACTTTGGGGAAACACTCA+AGG | - | chr4.4:30665831-30665850 | MS.gene56536:intron | 50.0% |
!! | ATCCTCAGTGGTTTGTTGCG+AGG | + | chr4.4:30664946-30664965 | None:intergenic | 50.0% |
!! | GGAGGCATTGCAGAATTCCA+TGG | + | chr4.4:30665656-30665675 | None:intergenic | 50.0% |
!! | GGTTGGTGAATTCACACCAG+AGG | + | chr4.4:30664512-30664531 | None:intergenic | 50.0% |
AAAGGCCACACCGGCACAAA+TGG | - | chr4.4:30665560-30665579 | MS.gene56536:intron | 55.0% | |
AAGGCCACACCGGCACAAAT+GGG | - | chr4.4:30665561-30665580 | MS.gene56536:intron | 55.0% | |
AGCCTCGCAACAAACCACTG+AGG | - | chr4.4:30664941-30664960 | MS.gene56536:intron | 55.0% | |
ATGCCCGCGATGCAATAGCA+TGG | - | chr4.4:30665127-30665146 | MS.gene56536:intron | 55.0% | |
ATGCTATTGCATCGCGGGCA+TGG | + | chr4.4:30665128-30665147 | None:intergenic | 55.0% | |
GCACTTCCTGGTGAGACACA+TGG | + | chr4.4:30665773-30665792 | None:intergenic | 55.0% | |
GCTGATGTATGCCAACCCTG+CGG | - | chr4.4:30666102-30666121 | MS.gene56536:CDS | 55.0% | |
GGTGGACAAAAGGTAGGAGG+AGG | + | chr4.4:30665674-30665693 | None:intergenic | 55.0% | |
! | GCAGGGTTGGCATACATCAG+CGG | + | chr4.4:30666103-30666122 | None:intergenic | 55.0% |
!! | GCCATGGTGTTACAAAGCGG+AGG | + | chr4.4:30665404-30665423 | None:intergenic | 55.0% |
CCACACCGGCACAAATGGGT+TGG | - | chr4.4:30665565-30665584 | MS.gene56536:intron | 60.0% | |
GAGACCGCGATAAAGCCGCA+GGG | + | chr4.4:30666120-30666139 | None:intergenic | 60.0% | |
GCGGTCTCGTACCTTCCATG+AGG | - | chr4.4:30666132-30666151 | MS.gene56536:CDS | 60.0% | |
GGGGTTGTATGCCACCTCCA+TGG | - | chr4.4:30665741-30665760 | MS.gene56536:intron | 60.0% | |
! | CCAACCCATTTGTGCCGGTG+TGG | + | chr4.4:30665568-30665587 | None:intergenic | 60.0% |
! | CCAACCCTGCGGCTTTATCG+CGG | - | chr4.4:30666113-30666132 | MS.gene56536:CDS | 60.0% |
CCGCGATAAAGCCGCAGGGT+TGG | + | chr4.4:30666116-30666135 | None:intergenic | 65.0% | |
CGAGACCGCGATAAAGCCGC+AGG | + | chr4.4:30666121-30666140 | None:intergenic | 65.0% | |
TTGCGGCGACCAGCTCCAAC+AGG | + | chr4.4:30665257-30665276 | None:intergenic | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr4.4 | gene | 30663626 | 30666162 | 30663626 | ID=MS.gene56536 |
chr4.4 | mRNA | 30663626 | 30666162 | 30663626 | ID=MS.gene56536.t1;Parent=MS.gene56536 |
chr4.4 | exon | 30666022 | 30666162 | 30666022 | ID=MS.gene56536.t1.exon1;Parent=MS.gene56536.t1 |
chr4.4 | CDS | 30666022 | 30666162 | 30666022 | ID=cds.MS.gene56536.t1;Parent=MS.gene56536.t1 |
chr4.4 | exon | 30663626 | 30664888 | 30663626 | ID=MS.gene56536.t1.exon2;Parent=MS.gene56536.t1 |
chr4.4 | CDS | 30663626 | 30664888 | 30663626 | ID=cds.MS.gene56536.t1;Parent=MS.gene56536.t1 |
Gene Sequence |
Protein sequence |