Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene56852.t1 | RHN63483.1 | 93.7 | 302 | 19 | 0 | 1 | 302 | 1 | 302 | 4.10E-126 | 461.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene56852.t1 | Q93VK9 | 34.7 | 294 | 186 | 3 | 10 | 302 | 24 | 312 | 1.8e-34 | 147.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene56852.t1 | A0A072UQ27 | 93.7 | 302 | 19 | 0 | 1 | 302 | 1 | 302 | 2.9e-126 | 461.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene051699 | MS.gene56852 | 0.815385 | 9.50E-52 | -1.69E-46 |
| MS.gene052533 | MS.gene56852 | 0.816903 | 4.35E-52 | -1.69E-46 |
| MS.gene057102 | MS.gene56852 | 0.833663 | 4.69E-56 | -1.69E-46 |
| MS.gene05985 | MS.gene56852 | -0.80087 | 1.18E-48 | -1.69E-46 |
| MS.gene060937 | MS.gene56852 | 0.800913 | 1.15E-48 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene56852.t1 | MTR_4g105330 | 94.702 | 302 | 16 | 0 | 1 | 302 | 1 | 302 | 0.0 | 583 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene56852.t1 | AT3G48210 | 41.472 | 299 | 159 | 6 | 10 | 302 | 24 | 312 | 5.60e-65 | 207 |
Find 62 sgRNAs with CRISPR-Local
Find 182 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGGCCATCTCTTGGTATAAC+AGG | 0.291680 | 8.1:-17399305 | MS.gene56852:CDS |
| CATCTGTCTTGTTTAATTCA+TGG | 0.302544 | 8.1:+17398946 | None:intergenic |
| TTTGATGGATTGGAAGGATT+TGG | 0.310983 | 8.1:+17401280 | None:intergenic |
| CGAGTTATATTCTTGTTTCC+TGG | 0.327916 | 8.1:+17400886 | None:intergenic |
| TTCTGCTTCGCAGCGGGTTA+AGG | 0.342230 | 8.1:+17401349 | None:intergenic |
| GTAAAAGAGTACTCCTCATT+TGG | 0.343740 | 8.1:+17399127 | None:intergenic |
| GAAGGAAGTGGAAGATGAAT+TGG | 0.348717 | 8.1:-17401115 | MS.gene56852:CDS |
| TCGCCAGTCTCCACGTTTGA+AGG | 0.380013 | 8.1:-17398208 | MS.gene56852:CDS |
| GAAGCAGAATCAGGAGATAA+AGG | 0.384958 | 8.1:+17398237 | None:intergenic |
| TCTTGGTATAACAGGGTACT+TGG | 0.397967 | 8.1:-17399297 | MS.gene56852:CDS |
| GGCTAAGCGAATGGCTTTGT+TGG | 0.400276 | 8.1:-17400972 | MS.gene56852:CDS |
| GAATTGGTTAAAGTACTTGC+AGG | 0.417371 | 8.1:-17401099 | MS.gene56852:intron |
| CGAACAGATGAAGCAGAATC+AGG | 0.420353 | 8.1:+17398228 | None:intergenic |
| AGTTCGCAGAAGGAAAAGTT+TGG | 0.432380 | 8.1:-17398262 | MS.gene56852:CDS |
| TCATCCGCTCCTGGCACATC+TGG | 0.434205 | 8.1:-17398363 | MS.gene56852:CDS |
| TAAAGACAAATTGAAGGAAG+TGG | 0.439442 | 8.1:-17401127 | MS.gene56852:CDS |
| AGGAGCGGATGAAGATATAA+AGG | 0.452608 | 8.1:+17398374 | None:intergenic |
| GTTCTAACAACAGTTAATCC+TGG | 0.455209 | 8.1:-17398405 | MS.gene56852:CDS |
| TGTGATTTCTGCTTCGCAGC+GGG | 0.455421 | 8.1:+17401343 | None:intergenic |
| TTTATATCTTCATCCGCTCC+TGG | 0.466324 | 8.1:-17398372 | MS.gene56852:CDS |
| TTCAGAAAAGACGCGTAAAG+AGG | 0.467634 | 8.1:-17400993 | MS.gene56852:intron |
| CGTTGTGAACCTTCCTTCGA+TGG | 0.489675 | 8.1:-17398984 | MS.gene56852:CDS |
| TGAGGTTAAAGACAAATTGA+AGG | 0.495061 | 8.1:-17401133 | MS.gene56852:CDS |
| GCTTCTGCTAAGGCTAGAGT+TGG | 0.508997 | 8.1:-17400941 | MS.gene56852:CDS |
| CTTCGATGGTATTGAAGAGC+TGG | 0.509662 | 8.1:-17398970 | MS.gene56852:CDS |
| ATACCTTCAAACGTGGAGAC+TGG | 0.510056 | 8.1:+17398205 | None:intergenic |
| GGATGCTATTGCTTCTGCTA+AGG | 0.514115 | 8.1:-17400951 | MS.gene56852:CDS |
| GGATTGGAAGGATTTGGAAA+AGG | 0.514441 | 8.1:+17401286 | None:intergenic |
| CAACAAACCGCGAAAACTCA+AGG | 0.515409 | 8.1:-17401248 | MS.gene56852:intron |
| TTAAGTTTGTCAGAGTAATG+AGG | 0.518116 | 8.1:-17398917 | MS.gene56852:CDS |
| GAGCATGAAGTGGAACGCTC+TGG | 0.532714 | 8.1:-17398312 | MS.gene56852:CDS |
| ATCTGAAGGGAGGTTGAATG+AGG | 0.533325 | 8.1:-17399355 | MS.gene56852:CDS |
| GATATAAAGGCAGATTCTCC+AGG | 0.534729 | 8.1:+17398387 | None:intergenic |
| TTTCAACTCAAGTATTCAAG+AGG | 0.534821 | 8.1:-17400915 | MS.gene56852:CDS |
| GAAGCTTTGGCAGCATCTGA+AGG | 0.537582 | 8.1:-17399369 | MS.gene56852:intron |
| GAAGGATTTGGAAAAGGAAG+CGG | 0.548779 | 8.1:+17401292 | None:intergenic |
| AAACACAGGAGGCCATCTCT+TGG | 0.552693 | 8.1:-17399314 | MS.gene56852:CDS |
| TGCTTCGCAGCGGGTTAAGG+AGG | 0.553460 | 8.1:+17401352 | None:intergenic |
| CTTCTCAGTTCAATTAGATG+AGG | 0.570883 | 8.1:-17401151 | MS.gene56852:intron |
| TAGAAGTGATTCTACAGCCA+TGG | 0.573031 | 8.1:-17398340 | MS.gene56852:CDS |
| CGGCGAAAGCGTCGACGGTG+TGG | 0.579854 | 8.1:+17401312 | None:intergenic |
| GGAAGCGGCGAAAGCGTCGA+CGG | 0.585423 | 8.1:+17401307 | None:intergenic |
| AAGCTTTGGCAGCATCTGAA+GGG | 0.586020 | 8.1:-17399368 | MS.gene56852:CDS |
| TCACTTCTACCAGATGTGCC+AGG | 0.586982 | 8.1:+17398354 | None:intergenic |
| TTTCAAGAAGCATTGGCACA+AGG | 0.601367 | 8.1:-17398888 | MS.gene56852:intron |
| TACCCTGTTATACCAAGAGA+TGG | 0.606063 | 8.1:+17399302 | None:intergenic |
| CAGCTCTTCAATACCATCGA+AGG | 0.622116 | 8.1:+17398971 | None:intergenic |
| CTTTGGCAGCATCTGAAGGG+AGG | 0.622951 | 8.1:-17399365 | MS.gene56852:CDS |
| AAATTTGAAGAATCCAAATG+AGG | 0.623545 | 8.1:-17399140 | MS.gene56852:CDS |
| CATGAATTAAACAAGACAGA+TGG | 0.623903 | 8.1:-17398945 | MS.gene56852:CDS |
| GCGTAAAGAGGCTAAGCGAA+TGG | 0.626876 | 8.1:-17400981 | MS.gene56852:CDS |
| TCTTCAATACCATCGAAGGA+AGG | 0.637490 | 8.1:+17398975 | None:intergenic |
| CATGGAAAATGAGCATGAAG+TGG | 0.637509 | 8.1:-17398322 | MS.gene56852:CDS |
| GTATTCAAGAGGTTCGAACC+AGG | 0.644559 | 8.1:-17400904 | MS.gene56852:CDS |
| GGCCATCTCTTGGTATAACA+GGG | 0.647513 | 8.1:-17399304 | MS.gene56852:CDS |
| TCTGAAGGGAGGTTGAATGA+GGG | 0.651760 | 8.1:-17399354 | MS.gene56852:CDS |
| TCTACCAGATGTGCCAGGAG+CGG | 0.654573 | 8.1:+17398359 | None:intergenic |
| TGAACATACAGATGAAACAC+AGG | 0.659863 | 8.1:-17399328 | MS.gene56852:CDS |
| TTTCGCGGTTTGTTGTGCGG+TGG | 0.664534 | 8.1:+17401256 | None:intergenic |
| GTGTGATTTCTGCTTCGCAG+CGG | 0.670448 | 8.1:+17401342 | None:intergenic |
| GTAATTCATACCTTCAAACG+TGG | 0.717846 | 8.1:+17398198 | None:intergenic |
| ACATACAGATGAAACACAGG+AGG | 0.726406 | 8.1:-17399325 | MS.gene56852:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAATTTAAAAAGACTGA+TGG | + | chr8.1:17399672-17399691 | None:intergenic | 15.0% |
| !! | CTACATTATTATTTGTTTAT+AGG | - | chr8.1:17399099-17399118 | MS.gene56852:CDS | 15.0% |
| !! | TGTTATAAAATAAGATTTGA+AGG | - | chr8.1:17399377-17399396 | MS.gene56852:intron | 15.0% |
| !!! | AATTAACTTTTTTTTGCTTA+AGG | - | chr8.1:17400326-17400345 | MS.gene56852:intron | 15.0% |
| !!! | AGCTTATTTGTTTTAAATAA+TGG | - | chr8.1:17398519-17398538 | MS.gene56852:intron | 15.0% |
| !!! | ATGTATAAGTATTTTTATCA+TGG | + | chr8.1:17400473-17400492 | None:intergenic | 15.0% |
| !!! | TCATTATAATATGAAGTATT+TGG | + | chr8.1:17400883-17400902 | None:intergenic | 15.0% |
| !!! | TTATCATTTTATAATTCAAG+CGG | + | chr8.1:17400783-17400802 | None:intergenic | 15.0% |
| !!! | TTCAAATCTTATTTTATAAC+AGG | + | chr8.1:17399378-17399397 | None:intergenic | 15.0% |
| !! | AAAAAATAAGCCAATCAAAA+CGG | + | chr8.1:17398841-17398860 | None:intergenic | 20.0% |
| !! | ACTTAAATAGCTATAAATTG+AGG | + | chr8.1:17398757-17398776 | None:intergenic | 20.0% |
| !! | CATAATGTATGTTAAACATA+AGG | - | chr8.1:17399163-17399182 | MS.gene56852:CDS | 20.0% |
| !! | GTATATAAAATCATAAATGC+AGG | + | chr8.1:17400504-17400523 | None:intergenic | 20.0% |
| !! | GTTCATACATTCAAAAATAA+TGG | + | chr8.1:17399901-17399920 | None:intergenic | 20.0% |
| !! | TATGTTTAACATACATTATG+TGG | + | chr8.1:17399163-17399182 | None:intergenic | 20.0% |
| !! | TTAATAGAATCACTTCATAT+TGG | + | chr8.1:17400843-17400862 | None:intergenic | 20.0% |
| !!! | ATCTTCAAAAATGATTTTAC+AGG | + | chr8.1:17399345-17399364 | None:intergenic | 20.0% |
| ! | AAAAATAAGCCAATCAAAAC+GGG | + | chr8.1:17398840-17398859 | None:intergenic | 25.0% |
| ! | AAAATGAAAACCCTAATAAG+AGG | + | chr8.1:17398389-17398408 | None:intergenic | 25.0% |
| ! | AAATTTGAAGAATCCAAATG+AGG | - | chr8.1:17400428-17400447 | MS.gene56852:intron | 25.0% |
| ! | AGTGGTAGAATTAATGAAAT+TGG | - | chr8.1:17399761-17399780 | MS.gene56852:intron | 25.0% |
| ! | ATAAAAAATAAGCCAGTCTA+TGG | - | chr8.1:17399027-17399046 | MS.gene56852:intron | 25.0% |
| ! | ATTATTGAACTGTTCAAACA+TGG | - | chr8.1:17400960-17400979 | MS.gene56852:CDS | 25.0% |
| ! | GTGGTAGAATTAATGAAATT+GGG | - | chr8.1:17399762-17399781 | MS.gene56852:intron | 25.0% |
| ! | GTTCAATAATACATATGAAC+TGG | + | chr8.1:17400950-17400969 | None:intergenic | 25.0% |
| ! | GTTCATACATTCAAAAACAA+TGG | + | chr8.1:17399856-17399875 | None:intergenic | 25.0% |
| ! | TAAAGTTGTAATGAAGTGAT+GGG | - | chr8.1:17399711-17399730 | MS.gene56852:intron | 25.0% |
| ! | TTAAAGTTGTAATGAAGTGA+TGG | - | chr8.1:17399710-17399729 | MS.gene56852:intron | 25.0% |
| ! | TTATGTGGACAATATCAAAT+AGG | + | chr8.1:17399148-17399167 | None:intergenic | 25.0% |
| !! | AAGGATGTTTTTCTAACAAT+GGG | - | chr8.1:17399396-17399415 | MS.gene56852:intron | 25.0% |
| !! | ATATGGATTAAAAGAGAAGA+TGG | + | chr8.1:17400179-17400198 | None:intergenic | 25.0% |
| !! | GAAAAAATTTCAAGAAGCAT+TGG | - | chr8.1:17400673-17400692 | MS.gene56852:intron | 25.0% |
| !! | GATCTAATTGCTATTAAACA+GGG | - | chr8.1:17401134-17401153 | MS.gene56852:CDS | 25.0% |
| !! | TATGGATTAAAAGAGAAGAT+GGG | + | chr8.1:17400178-17400197 | None:intergenic | 25.0% |
| !! | TGATCTAATTGCTATTAAAC+AGG | - | chr8.1:17401133-17401152 | MS.gene56852:CDS | 25.0% |
| !! | TTTTAATCCATATGAAGCTT+TGG | - | chr8.1:17400186-17400205 | MS.gene56852:intron | 25.0% |
| !!! | ACTGGCTTATTTTTTATCTT+AGG | + | chr8.1:17399024-17399043 | None:intergenic | 25.0% |
| AAAGATAAAAGAGATGGTGT+AGG | + | chr8.1:17400556-17400575 | None:intergenic | 30.0% | |
| AAGCTTGTCTTGTACAAAAT+CGG | - | chr8.1:17399793-17399812 | MS.gene56852:intron | 30.0% | |
| ACACTGAAAGATAAAAGAGA+TGG | + | chr8.1:17400562-17400581 | None:intergenic | 30.0% | |
| ATCTCAATACTTATGCAAGA+TGG | + | chr8.1:17399199-17399218 | None:intergenic | 30.0% | |
| CATGAATTAAACAAGACAGA+TGG | - | chr8.1:17400623-17400642 | MS.gene56852:intron | 30.0% | |
| CTTATTAGTTATGCTCTTCA+GGG | - | chr8.1:17400382-17400401 | MS.gene56852:intron | 30.0% | |
| GAGCTCTGCATATTTATATT+GGG | + | chr8.1:17400821-17400840 | None:intergenic | 30.0% | |
| TAAAGACAAATTGAAGGAAG+TGG | - | chr8.1:17398441-17398460 | MS.gene56852:intron | 30.0% | |
| TAAATAGTATCTTCGCTTGT+TGG | - | chr8.1:17401073-17401092 | MS.gene56852:intron | 30.0% | |
| TACCACTTTGATACACAAAA+GGG | + | chr8.1:17399748-17399767 | None:intergenic | 30.0% | |
| TCTTATTCATAAGCTTGTGA+AGG | - | chr8.1:17398903-17398922 | MS.gene56852:CDS | 30.0% | |
| TGAGGTTAAAGACAAATTGA+AGG | - | chr8.1:17398435-17398454 | MS.gene56852:intron | 30.0% | |
| TTAAGCTTGTAACTATGTTG+TGG | - | chr8.1:17399501-17399520 | MS.gene56852:intron | 30.0% | |
| TTAAGTTTGTCAGAGTAATG+AGG | - | chr8.1:17400651-17400670 | MS.gene56852:intron | 30.0% | |
| TTATTAGTTATGCTCTTCAG+GGG | - | chr8.1:17400383-17400402 | MS.gene56852:intron | 30.0% | |
| TTGTTGGAAATTGGATGAAA+GGG | - | chr8.1:17401089-17401108 | MS.gene56852:intron | 30.0% | |
| TTTCAACTCAAGTATTCAAG+AGG | - | chr8.1:17398653-17398672 | MS.gene56852:intron | 30.0% | |
| ! | ATGGATTAAAAGAGAAGATG+GGG | + | chr8.1:17400177-17400196 | None:intergenic | 30.0% |
| ! | GAAGGATGTTTTTCTAACAA+TGG | - | chr8.1:17399395-17399414 | MS.gene56852:intron | 30.0% |
| ! | TAACTATGTTGTGGTTGTTT+TGG | - | chr8.1:17399510-17399529 | MS.gene56852:intron | 30.0% |
| ! | TCACTCTTTTCCTCTTATTA+GGG | - | chr8.1:17398376-17398395 | MS.gene56852:CDS | 30.0% |
| ! | TTCACTCTTTTCCTCTTATT+AGG | - | chr8.1:17398375-17398394 | MS.gene56852:CDS | 30.0% |
| !! | AACTATGTTGTGGTTGTTTT+GGG | - | chr8.1:17399511-17399530 | MS.gene56852:intron | 30.0% |
| !! | CATCTGTCTTGTTTAATTCA+TGG | + | chr8.1:17400625-17400644 | None:intergenic | 30.0% |
| !! | GTAAATCTCTGTTTTTCTTC+TGG | - | chr8.1:17399283-17399302 | MS.gene56852:CDS | 30.0% |
| !! | TACTTGGTTTTCATGTCAAA+GGG | - | chr8.1:17400287-17400306 | MS.gene56852:intron | 30.0% |
| !! | TTATTGGTTTACTACATCTC+TGG | - | chr8.1:17399548-17399567 | MS.gene56852:intron | 30.0% |
| !!! | TGCATTCTATGTTTTGATTG+AGG | - | chr8.1:17400031-17400050 | MS.gene56852:intron | 30.0% |
| AGAAAAAACAAGTTCGCAGA+AGG | - | chr8.1:17401296-17401315 | MS.gene56852:CDS | 35.0% | |
| AGCATAGAACTAGTAAGACA+TGG | - | chr8.1:17399307-17399326 | MS.gene56852:CDS | 35.0% | |
| AGCTTGTCTTGTACAAAATC+GGG | - | chr8.1:17399794-17399813 | MS.gene56852:intron | 35.0% | |
| ATGGTTGTCGACATCATAAT+TGG | - | chr8.1:17399046-17399065 | MS.gene56852:intron | 35.0% | |
| CCTTATTAGTTATGCTCTTC+AGG | - | chr8.1:17400381-17400400 | MS.gene56852:intron | 35.0% | |
| CTACCACTTTGATACACAAA+AGG | + | chr8.1:17399749-17399768 | None:intergenic | 35.0% | |
| CTCATCTAATTGAACTGAGA+AGG | + | chr8.1:17398419-17398438 | None:intergenic | 35.0% | |
| CTTCTCAGTTCAATTAGATG+AGG | - | chr8.1:17398417-17398436 | MS.gene56852:intron | 35.0% | |
| CTTGTTGGAAATTGGATGAA+AGG | - | chr8.1:17401088-17401107 | MS.gene56852:intron | 35.0% | |
| GGAGCTCTGCATATTTATAT+TGG | + | chr8.1:17400822-17400841 | None:intergenic | 35.0% | |
| GTTCTAACAACAGTTAATCC+TGG | - | chr8.1:17401163-17401182 | MS.gene56852:intron | 35.0% | |
| TACTTATGCAAGATGGCATT+TGG | + | chr8.1:17399192-17399211 | None:intergenic | 35.0% | |
| TGAACATACAGATGAAACAC+AGG | - | chr8.1:17400240-17400259 | MS.gene56852:intron | 35.0% | |
| TGGATTAAAAGAGAAGATGG+GGG | + | chr8.1:17400176-17400195 | None:intergenic | 35.0% | |
| TTAAGTTCCTTCACCAAACA+GGG | + | chr8.1:17398804-17398823 | None:intergenic | 35.0% | |
| TTGAGATTACATGTACCATG+AGG | - | chr8.1:17399212-17399231 | MS.gene56852:intron | 35.0% | |
| TTGCAGGTTCGTTTGTATTT+GGG | - | chr8.1:17398485-17398504 | MS.gene56852:intron | 35.0% | |
| ! | CCTGAAGAGCATAACTAATA+AGG | + | chr8.1:17400384-17400403 | None:intergenic | 35.0% |
| ! | CGAGTTATATTCTTGTTTCC+TGG | + | chr8.1:17398685-17398704 | None:intergenic | 35.0% |
| ! | CTATAAATTGAGGCATTTGC+AGG | + | chr8.1:17398747-17398766 | None:intergenic | 35.0% |
| ! | GAATTGGTTAAAGTACTTGC+AGG | - | chr8.1:17398469-17398488 | MS.gene56852:intron | 35.0% |
| ! | TATCTTCGCTTGTTGGAAAT+TGG | - | chr8.1:17401080-17401099 | MS.gene56852:intron | 35.0% |
| ! | TTTTTATCGCAGCAATCACT+CGG | - | chr8.1:17398705-17398724 | MS.gene56852:intron | 35.0% |
| !! | ACTATGTTGTGGTTGTTTTG+GGG | - | chr8.1:17399512-17399531 | MS.gene56852:intron | 35.0% |
| !! | ACTTGGTTTTCATGTCAAAG+GGG | - | chr8.1:17400288-17400307 | MS.gene56852:intron | 35.0% |
| !! | GTAAAAGAGTACTCCTCATT+TGG | + | chr8.1:17400444-17400463 | None:intergenic | 35.0% |
| !! | GTACTTGGTTTTCATGTCAA+AGG | - | chr8.1:17400286-17400305 | MS.gene56852:intron | 35.0% |
| !! | TTTGATGGATTGGAAGGATT+TGG | + | chr8.1:17398291-17398310 | None:intergenic | 35.0% |
| ACATACAGATGAAACACAGG+AGG | - | chr8.1:17400243-17400262 | MS.gene56852:intron | 40.0% | |
| AGGAGCGGATGAAGATATAA+AGG | + | chr8.1:17401197-17401216 | None:intergenic | 40.0% | |
| AGTTCGCAGAAGGAAAAGTT+TGG | - | chr8.1:17401306-17401325 | MS.gene56852:CDS | 40.0% | |
| ATACAGATTCACACCCTGTT+TGG | - | chr8.1:17398788-17398807 | MS.gene56852:intron | 40.0% | |
| ATCTCAACCATGTGACTTCT+CGG | - | chr8.1:17399611-17399630 | MS.gene56852:intron | 40.0% | |
| ATGAGTGTATGCATGTGATG+TGG | - | chr8.1:17400729-17400748 | MS.gene56852:intron | 40.0% | |
| ATTAAAAGAGAAGATGGGGG+AGG | + | chr8.1:17400173-17400192 | None:intergenic | 40.0% | |
| CATGGAAAATGAGCATGAAG+TGG | - | chr8.1:17401246-17401265 | MS.gene56852:intron | 40.0% | |
| CTTGCAGGTTCGTTTGTATT+TGG | - | chr8.1:17398484-17398503 | MS.gene56852:intron | 40.0% | |
| GAAGCAGAATCAGGAGATAA+AGG | + | chr8.1:17401334-17401353 | None:intergenic | 40.0% | |
| GAAGGAAGTGGAAGATGAAT+TGG | - | chr8.1:17398453-17398472 | MS.gene56852:intron | 40.0% | |
| GAAGGATTTGGAAAAGGAAG+CGG | + | chr8.1:17398279-17398298 | None:intergenic | 40.0% | |
| GATATAAAGGCAGATTCTCC+AGG | + | chr8.1:17401184-17401203 | None:intergenic | 40.0% | |
| GCGAAAACTCAAGGTCTTTA+GGG | - | chr8.1:17398329-17398348 | MS.gene56852:CDS | 40.0% | |
| GGATTGGAAGGATTTGGAAA+AGG | + | chr8.1:17398285-17398304 | None:intergenic | 40.0% | |
| GTCGACATCATAATTGGACA+TGG | - | chr8.1:17399052-17399071 | MS.gene56852:intron | 40.0% | |
| GTTAAGTTCCTTCACCAAAC+AGG | + | chr8.1:17398805-17398824 | None:intergenic | 40.0% | |
| TACCCTGTTATACCAAGAGA+TGG | + | chr8.1:17400269-17400288 | None:intergenic | 40.0% | |
| TAGAAGTGATTCTACAGCCA+TGG | - | chr8.1:17401228-17401247 | MS.gene56852:intron | 40.0% | |
| TCTTCAATACCATCGAAGGA+AGG | + | chr8.1:17400596-17400615 | None:intergenic | 40.0% | |
| TGAGTGTATGCATGTGATGT+GGG | - | chr8.1:17400730-17400749 | MS.gene56852:intron | 40.0% | |
| TTCAGAAAAGACGCGTAAAG+AGG | - | chr8.1:17398575-17398594 | MS.gene56852:intron | 40.0% | |
| TTTATATCTTCATCCGCTCC+TGG | - | chr8.1:17401196-17401215 | MS.gene56852:intron | 40.0% | |
| ! | ATGAAGTGATGGGATATCGT+TGG | - | chr8.1:17399721-17399740 | MS.gene56852:intron | 40.0% |
| ! | CACTTCATGCTCATTTTCCA+TGG | + | chr8.1:17401248-17401267 | None:intergenic | 40.0% |
| ! | CTAAAGACCTTGAGTTTTCG+CGG | + | chr8.1:17398330-17398349 | None:intergenic | 40.0% |
| ! | GTCCCTTTTGTGTATCAAAG+TGG | - | chr8.1:17399743-17399762 | MS.gene56852:intron | 40.0% |
| ! | TCTTGGTATAACAGGGTACT+TGG | - | chr8.1:17400271-17400290 | MS.gene56852:intron | 40.0% |
| !! | CTTGGTTTTCATGTCAAAGG+GGG | - | chr8.1:17400289-17400308 | MS.gene56852:intron | 40.0% |
| !! | TTTCAAGAAGCATTGGCACA+AGG | - | chr8.1:17400680-17400699 | MS.gene56852:intron | 40.0% |
| AGGCCATCTCTTGGTATAAC+AGG | - | chr8.1:17400263-17400282 | MS.gene56852:intron | 45.0% | |
| ATACCTTCAAACGTGGAGAC+TGG | + | chr8.1:17401366-17401385 | None:intergenic | 45.0% | |
| ATCTGAAGGGAGGTTGAATG+AGG | - | chr8.1:17400213-17400232 | MS.gene56852:intron | 45.0% | |
| CAACAAACCGCGAAAACTCA+AGG | - | chr8.1:17398320-17398339 | MS.gene56852:CDS | 45.0% | |
| CAGCTCTTCAATACCATCGA+AGG | + | chr8.1:17400600-17400619 | None:intergenic | 45.0% | |
| CGAACAGATGAAGCAGAATC+AGG | + | chr8.1:17401343-17401362 | None:intergenic | 45.0% | |
| CGCGAAAACTCAAGGTCTTT+AGG | - | chr8.1:17398328-17398347 | MS.gene56852:CDS | 45.0% | |
| CTCTTCAACCTCGAGAAACT+TGG | + | chr8.1:17399588-17399607 | None:intergenic | 45.0% | |
| GATGCTGCCAAAGCTTCATA+TGG | + | chr8.1:17400196-17400215 | None:intergenic | 45.0% | |
| GGATGCTATTGCTTCTGCTA+AGG | - | chr8.1:17398617-17398636 | MS.gene56852:intron | 45.0% | |
| GGCCATCTCTTGGTATAACA+GGG | - | chr8.1:17400264-17400283 | MS.gene56852:intron | 45.0% | |
| GTATTCAAGAGGTTCGAACC+AGG | - | chr8.1:17398664-17398683 | MS.gene56852:intron | 45.0% | |
| GTTTACTACATCTCTGGTGC+CGG | - | chr8.1:17399554-17399573 | MS.gene56852:intron | 45.0% | |
| TACCATGAGGTTGTCATGTC+TGG | - | chr8.1:17399225-17399244 | MS.gene56852:intron | 45.0% | |
| TCTCAACCATGTGACTTCTC+GGG | - | chr8.1:17399612-17399631 | MS.gene56852:intron | 45.0% | |
| TCTGAAGGGAGGTTGAATGA+GGG | - | chr8.1:17400214-17400233 | MS.gene56852:intron | 45.0% | |
| TGATGTCGACAACCATAGAC+TGG | + | chr8.1:17399042-17399061 | None:intergenic | 45.0% | |
| TTTACTACATCTCTGGTGCC+GGG | - | chr8.1:17399555-17399574 | MS.gene56852:intron | 45.0% | |
| ! | AAGCTTTGGCAGCATCTGAA+GGG | - | chr8.1:17400200-17400219 | MS.gene56852:intron | 45.0% |
| ! | ATTCACACCCTGTTTGGTGA+AGG | - | chr8.1:17398794-17398813 | MS.gene56852:intron | 45.0% |
| ! | CTTCGATGGTATTGAAGAGC+TGG | - | chr8.1:17400598-17400617 | MS.gene56852:intron | 45.0% |
| !! | GACTTAGTGCCCGTTTTGAT+TGG | - | chr8.1:17398828-17398847 | MS.gene56852:intron | 45.0% |
| !!! | AGTTTTCGCGGTTTGTTGTG+CGG | + | chr8.1:17398318-17398337 | None:intergenic | 45.0% |
| !!! | GGTGGTTTTGATGGATTGGA+AGG | + | chr8.1:17398297-17398316 | None:intergenic | 45.0% |
| !!! | GGTTGTTTTGGGGTTTTGCT+GGG | - | chr8.1:17399522-17399541 | MS.gene56852:intron | 45.0% |
| !!! | TGGTTGTTTTGGGGTTTTGC+TGG | - | chr8.1:17399521-17399540 | MS.gene56852:intron | 45.0% |
| !!! | TTGTTGTGCGGTGGTTTTGA+TGG | + | chr8.1:17398306-17398325 | None:intergenic | 45.0% |
| AAACACAGGAGGCCATCTCT+TGG | - | chr8.1:17400254-17400273 | MS.gene56852:intron | 50.0% | |
| CGTTGTGAACCTTCCTTCGA+TGG | - | chr8.1:17400584-17400603 | MS.gene56852:intron | 50.0% | |
| GATGTGGGAGCTCTGCATAT+TGG | - | chr8.1:17400745-17400764 | MS.gene56852:intron | 50.0% | |
| GCGTAAAGAGGCTAAGCGAA+TGG | - | chr8.1:17398587-17398606 | MS.gene56852:intron | 50.0% | |
| GCTTCTGCTAAGGCTAGAGT+TGG | - | chr8.1:17398627-17398646 | MS.gene56852:intron | 50.0% | |
| GTCCAGACATGACAACCTCA+TGG | + | chr8.1:17399230-17399249 | None:intergenic | 50.0% | |
| GTCTCGAACCAAGTTTCTCG+AGG | - | chr8.1:17399577-17399596 | MS.gene56852:intron | 50.0% | |
| GTGTGATTTCTGCTTCGCAG+CGG | + | chr8.1:17398229-17398248 | None:intergenic | 50.0% | |
| TCACTTCTACCAGATGTGCC+AGG | + | chr8.1:17401217-17401236 | None:intergenic | 50.0% | |
| TGTGATTTCTGCTTCGCAGC+GGG | + | chr8.1:17398228-17398247 | None:intergenic | 50.0% | |
| TTTCATGTCAAAGGGGGACG+TGG | - | chr8.1:17400295-17400314 | MS.gene56852:intron | 50.0% | |
| ! | GAAGCTTTGGCAGCATCTGA+AGG | - | chr8.1:17400199-17400218 | MS.gene56852:intron | 50.0% |
| ! | GAGAAACTTGGTTCGAGACC+CGG | + | chr8.1:17399576-17399595 | None:intergenic | 50.0% |
| ! | GAGGCATTTGCAGGAAAGAG+AGG | + | chr8.1:17398738-17398757 | None:intergenic | 50.0% |
| ! | GGGTTTTGCTGGGTGGTTAT+TGG | - | chr8.1:17399532-17399551 | MS.gene56852:intron | 50.0% |
| !! | GGCTAAGCGAATGGCTTTGT+TGG | - | chr8.1:17398596-17398615 | MS.gene56852:intron | 50.0% |
| !!! | GTGCGGTGGTTTTGATGGAT+TGG | + | chr8.1:17398301-17398320 | None:intergenic | 50.0% |
| !!! | TGTTTTGGGGTTTTGCTGGG+TGG | - | chr8.1:17399525-17399544 | MS.gene56852:intron | 50.0% |
| ACTTCTCGGGAGACAGGCAT+TGG | - | chr8.1:17399625-17399644 | MS.gene56852:intron | 55.0% | |
| CATGTGACTTCTCGGGAGAC+AGG | - | chr8.1:17399619-17399638 | MS.gene56852:intron | 55.0% | |
| CTGTCTCCCGAGAAGTCACA+TGG | + | chr8.1:17399621-17399640 | None:intergenic | 55.0% | |
| CTTTGGCAGCATCTGAAGGG+AGG | - | chr8.1:17400203-17400222 | MS.gene56852:intron | 55.0% | |
| GAGCATGAAGTGGAACGCTC+TGG | - | chr8.1:17401256-17401275 | MS.gene56852:CDS | 55.0% | |
| TCGCCAGTCTCCACGTTTGA+AGG | - | chr8.1:17401360-17401379 | MS.gene56852:CDS | 55.0% | |
| TCTACCAGATGTGCCAGGAG+CGG | + | chr8.1:17401212-17401231 | None:intergenic | 55.0% | |
| !! | TTCTGCTTCGCAGCGGGTTA+AGG | + | chr8.1:17398222-17398241 | None:intergenic | 55.0% |
| !! | TTTCGCGGTTTGTTGTGCGG+TGG | + | chr8.1:17398315-17398334 | None:intergenic | 55.0% |
| GAGAAGATGGGGGAGGTGAG+AGG | + | chr8.1:17400166-17400185 | None:intergenic | 60.0% | |
| TCATCCGCTCCTGGCACATC+TGG | - | chr8.1:17401205-17401224 | MS.gene56852:intron | 60.0% | |
| !! | TGCTTCGCAGCGGGTTAAGG+AGG | + | chr8.1:17398219-17398238 | None:intergenic | 60.0% |
| !! | GGAAGCGGCGAAAGCGTCGA+CGG | + | chr8.1:17398264-17398283 | None:intergenic | 65.0% |
| !! | CGGCGAAAGCGTCGACGGTG+TGG | + | chr8.1:17398259-17398278 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.1 | gene | 17398203 | 17401387 | 17398203 | ID=MS.gene56852 |
| chr8.1 | mRNA | 17398203 | 17401387 | 17398203 | ID=MS.gene56852.t1;Parent=MS.gene56852 |
| chr8.1 | exon | 17401249 | 17401387 | 17401249 | ID=MS.gene56852.t1.exon1;Parent=MS.gene56852.t1 |
| chr8.1 | CDS | 17401249 | 17401387 | 17401249 | ID=cds.MS.gene56852.t1;Parent=MS.gene56852.t1 |
| chr8.1 | exon | 17401100 | 17401165 | 17401100 | ID=MS.gene56852.t1.exon2;Parent=MS.gene56852.t1 |
| chr8.1 | CDS | 17401100 | 17401165 | 17401100 | ID=cds.MS.gene56852.t1;Parent=MS.gene56852.t1 |
| chr8.1 | exon | 17400864 | 17401010 | 17400864 | ID=MS.gene56852.t1.exon3;Parent=MS.gene56852.t1 |
| chr8.1 | CDS | 17400864 | 17401010 | 17400864 | ID=cds.MS.gene56852.t1;Parent=MS.gene56852.t1 |
| chr8.1 | exon | 17399274 | 17399387 | 17399274 | ID=MS.gene56852.t1.exon4;Parent=MS.gene56852.t1 |
| chr8.1 | CDS | 17399274 | 17399387 | 17399274 | ID=cds.MS.gene56852.t1;Parent=MS.gene56852.t1 |
| chr8.1 | exon | 17399098 | 17399187 | 17399098 | ID=MS.gene56852.t1.exon5;Parent=MS.gene56852.t1 |
| chr8.1 | CDS | 17399098 | 17399187 | 17399098 | ID=cds.MS.gene56852.t1;Parent=MS.gene56852.t1 |
| chr8.1 | exon | 17398889 | 17399011 | 17398889 | ID=MS.gene56852.t1.exon6;Parent=MS.gene56852.t1 |
| chr8.1 | CDS | 17398889 | 17399011 | 17398889 | ID=cds.MS.gene56852.t1;Parent=MS.gene56852.t1 |
| chr8.1 | exon | 17398203 | 17398435 | 17398203 | ID=MS.gene56852.t1.exon7;Parent=MS.gene56852.t1 |
| chr8.1 | CDS | 17398203 | 17398435 | 17398203 | ID=cds.MS.gene56852.t1;Parent=MS.gene56852.t1 |
| Gene Sequence |
| Protein sequence |
