Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene56876.t1 | KEH31843.1 | 79 | 271 | 7 | 1 | 1 | 221 | 1 | 271 | 1.10E-110 | 409.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene56876.t1 | Q9FJJ3 | 31.1 | 222 | 85 | 6 | 68 | 228 | 70 | 284 | 3.4e-17 | 90.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene56876.t1 | A0A072UPT7 | 79.0 | 271 | 7 | 1 | 1 | 221 | 1 | 271 | 7.6e-111 | 409.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene051821 | MS.gene56876 | 0.805874 | 1.08E-49 | -1.69E-46 |
| MS.gene051823 | MS.gene56876 | 0.803183 | 3.94E-49 | -1.69E-46 |
| MS.gene05624 | MS.gene56876 | 0.801886 | 7.29E-49 | -1.69E-46 |
| MS.gene060522 | MS.gene56876 | 0.813448 | 2.55E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene56876.t1 | MTR_4g105740 | 78.967 | 271 | 7 | 1 | 1 | 221 | 1 | 271 | 1.44e-151 | 424 |
| MS.gene56876.t1 | MTR_4g105740 | 78.967 | 271 | 7 | 1 | 1 | 221 | 1 | 271 | 2.58e-151 | 424 |
| MS.gene56876.t1 | MTR_3g077870 | 36.071 | 280 | 111 | 6 | 13 | 228 | 15 | 290 | 7.18e-50 | 166 |
| MS.gene56876.t1 | MTR_1g112330 | 32.331 | 133 | 61 | 3 | 118 | 221 | 398 | 530 | 9.00e-15 | 73.2 |
| MS.gene56876.t1 | MTR_5g032190 | 32.353 | 136 | 60 | 2 | 118 | 221 | 391 | 526 | 1.30e-14 | 72.8 |
| MS.gene56876.t1 | MTR_1g112330 | 31.618 | 136 | 61 | 3 | 118 | 221 | 398 | 533 | 2.09e-14 | 72.0 |
| MS.gene56876.t1 | MTR_8g088250 | 36.082 | 97 | 58 | 2 | 125 | 221 | 161 | 253 | 1.10e-13 | 68.9 |
| MS.gene56876.t1 | MTR_1g112330 | 49.091 | 55 | 28 | 0 | 118 | 172 | 398 | 452 | 2.68e-13 | 68.6 |
| MS.gene56876.t1 | MTR_5g029580 | 28.125 | 128 | 68 | 2 | 116 | 219 | 187 | 314 | 1.11e-12 | 66.6 |
| MS.gene56876.t1 | MTR_5g032190 | 50.000 | 54 | 27 | 0 | 118 | 171 | 391 | 444 | 1.42e-12 | 66.6 |
| MS.gene56876.t1 | MTR_5g032190 | 50.000 | 54 | 27 | 0 | 118 | 171 | 391 | 444 | 1.45e-12 | 66.6 |
| MS.gene56876.t1 | MTR_7g011550 | 32.727 | 110 | 53 | 3 | 118 | 206 | 376 | 485 | 6.57e-11 | 61.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene56876.t1 | AT3G47720 | 30.769 | 221 | 84 | 6 | 68 | 228 | 78 | 289 | 2.67e-22 | 93.2 |
| MS.gene56876.t1 | AT5G62520 | 44.248 | 113 | 53 | 2 | 119 | 228 | 179 | 284 | 1.95e-21 | 90.9 |
| MS.gene56876.t1 | AT1G23550 | 27.660 | 235 | 105 | 5 | 48 | 221 | 56 | 286 | 6.59e-21 | 89.4 |
| MS.gene56876.t1 | AT1G70440 | 24.627 | 268 | 129 | 8 | 15 | 221 | 19 | 274 | 7.96e-16 | 75.1 |
| MS.gene56876.t1 | AT1G70440 | 24.627 | 268 | 129 | 8 | 15 | 221 | 19 | 274 | 7.96e-16 | 75.1 |
Find 62 sgRNAs with CRISPR-Local
Find 86 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGAAACTCATAACATATTC+AGG | 0.280626 | 8.1:-17636904 | None:intergenic |
| ACTCCAAACAATGAACTCTT+TGG | 0.300883 | 8.1:-17636857 | None:intergenic |
| CAAGTACACACTACCTTTGT+TGG | 0.301766 | 8.1:-17636935 | None:intergenic |
| AAACGAATCTGCTTCGGATT+AGG | 0.308031 | 8.1:-17636245 | None:intergenic |
| CCAAGTTTCACAAGGAGTAT+AGG | 0.324583 | 8.1:+17637155 | MS.gene56876:CDS |
| CTCCCAAAGAGTTCATTGTT+TGG | 0.353473 | 8.1:+17636854 | MS.gene56876:CDS |
| AGAGTCGGGAATTGCATAAA+AGG | 0.360107 | 8.1:-17637082 | None:intergenic |
| CAAGTTTCACAAGGAGTATA+GGG | 0.369249 | 8.1:+17637156 | MS.gene56876:CDS |
| CCTATACTCCTTGTGAAACT+TGG | 0.373522 | 8.1:-17637155 | None:intergenic |
| AGTTCAGAAGAATATGATTC+TGG | 0.386842 | 8.1:+17636814 | MS.gene56876:CDS |
| CTCCAAACAATGAACTCTTT+GGG | 0.417033 | 8.1:-17636856 | None:intergenic |
| TAGGGTAAGTGTTTCGGACT+TGG | 0.417634 | 8.1:+17637174 | MS.gene56876:CDS |
| TCGTCTTCCGAACTATCCTT+CGG | 0.427547 | 8.1:-17636203 | None:intergenic |
| TGTTTCGGTAAATTGTAGAT+TGG | 0.431614 | 8.1:-17636111 | None:intergenic |
| TTTGTAGGACATGAGAAGGT+TGG | 0.436670 | 8.1:+17637028 | MS.gene56876:intron |
| AACCACAAACGAATCTGCTT+CGG | 0.446185 | 8.1:-17636251 | None:intergenic |
| TCGCCGGCGGAATCATGTTT+CGG | 0.448520 | 8.1:-17636126 | None:intergenic |
| CGTCTTCCGAACTATCCTTC+GGG | 0.448830 | 8.1:-17636202 | None:intergenic |
| CTGAAAATCGCTACTCCATA+GGG | 0.455210 | 8.1:-17636294 | None:intergenic |
| CCTGAAAATCGCTACTCCAT+AGG | 0.467324 | 8.1:-17636295 | None:intergenic |
| CATGAGAAGGTTGGAGTTGG+AGG | 0.468737 | 8.1:+17637037 | MS.gene56876:CDS |
| TTTCAGGAATCCTTGTAAAA+CGG | 0.475306 | 8.1:+17636311 | MS.gene56876:CDS |
| ATCCGAAGCAGATTCGTTTG+TGG | 0.477453 | 8.1:+17636249 | MS.gene56876:CDS |
| GGACATGAGAAGGTTGGAGT+TGG | 0.482722 | 8.1:+17637034 | MS.gene56876:intron |
| ACGATTCCCGAAGGATAGTT+CGG | 0.498656 | 8.1:+17636196 | MS.gene56876:CDS |
| GGAGTATAGGGTAAGTGTTT+CGG | 0.506827 | 8.1:+17637168 | MS.gene56876:CDS |
| GCGCAAGGGTTGAAACCCTA+TGG | 0.518787 | 8.1:+17636279 | MS.gene56876:CDS |
| GAATCCTTGTAAAACGGTAA+TGG | 0.521351 | 8.1:+17636317 | MS.gene56876:CDS |
| CCTTCGGGAATCGTGGCCGC+CGG | 0.528283 | 8.1:-17636187 | None:intergenic |
| GGATGTGACACTCTCACAAT+CGG | 0.535477 | 8.1:-17636166 | None:intergenic |
| CTCCTTGTGAAACTTGGCAA+TGG | 0.542921 | 8.1:-17637149 | None:intergenic |
| AAAGCGCAGAAATCAGAGTC+GGG | 0.547882 | 8.1:-17637096 | None:intergenic |
| TTCAAACTTGCTTCCAACAA+AGG | 0.549408 | 8.1:+17636922 | MS.gene56876:CDS |
| GTTTGTGGTTTAAGTGCGCA+AGG | 0.554303 | 8.1:+17636264 | MS.gene56876:CDS |
| AATCGCTGATTCATCTTCGC+CGG | 0.558062 | 8.1:-17636142 | None:intergenic |
| GATTGTGAGAGTGTCACATC+CGG | 0.562167 | 8.1:+17636168 | MS.gene56876:CDS |
| AATTGCATAAAAGGCGAAGA+CGG | 0.562424 | 8.1:-17637073 | None:intergenic |
| GCAATGGAAACAATATCAGA+TGG | 0.571537 | 8.1:-17637133 | None:intergenic |
| GAATCATATTCTTCTGAACT+CGG | 0.573273 | 8.1:-17636811 | None:intergenic |
| CGCTGATTCATCTTCGCCGG+CGG | 0.587670 | 8.1:-17636139 | None:intergenic |
| CGGTGGCTAAAATGCGCGGT+GGG | 0.591716 | 8.1:+17636379 | MS.gene56876:CDS |
| TTCCATTGCCAAGTTTCACA+AGG | 0.602302 | 8.1:+17637147 | MS.gene56876:CDS |
| TTTGTGGTTTAAGTGCGCAA+GGG | 0.604517 | 8.1:+17636265 | MS.gene56876:CDS |
| ATGAGAAGGTTGGAGTTGGA+GGG | 0.604737 | 8.1:+17637038 | MS.gene56876:CDS |
| TTACCGAAACATGATTCCGC+CGG | 0.606830 | 8.1:+17636123 | MS.gene56876:CDS |
| TGAGATCTTCGCACGTGCGG+TGG | 0.607606 | 8.1:+17636362 | MS.gene56876:CDS |
| CCGGCGGCCACGATTCCCGA+AGG | 0.615886 | 8.1:+17636187 | MS.gene56876:CDS |
| ATAGTTCGGAAGACGACGGA+GGG | 0.618356 | 8.1:+17636210 | MS.gene56876:CDS |
| CGTGCGGTGGCTAAAATGCG+CGG | 0.622389 | 8.1:+17636375 | MS.gene56876:CDS |
| GAAAGCGCAGAAATCAGAGT+CGG | 0.626070 | 8.1:-17637097 | None:intergenic |
| GAACTATCCTTCGGGAATCG+TGG | 0.630182 | 8.1:-17636194 | None:intergenic |
| GATAGTTCGGAAGACGACGG+AGG | 0.630672 | 8.1:+17636209 | MS.gene56876:CDS |
| AATGTAAAACACGTGTGGTA+CGG | 0.641792 | 8.1:+17636408 | MS.gene56876:CDS |
| GTTTGAGATCTTCGCACGTG+CGG | 0.658246 | 8.1:+17636359 | MS.gene56876:CDS |
| AAACGGTAATGGCACAAGCG+AGG | 0.659734 | 8.1:+17636328 | MS.gene56876:CDS |
| GCGGTGGCTAAAATGCGCGG+TGG | 0.662286 | 8.1:+17636378 | MS.gene56876:CDS |
| AGAAGAATATGATTCTGGAG+TGG | 0.669225 | 8.1:+17636819 | MS.gene56876:CDS |
| ATGGAAACAATATCAGATGG+AGG | 0.669944 | 8.1:-17637130 | None:intergenic |
| ATGCTAATGTAAAACACGTG+TGG | 0.673627 | 8.1:+17636403 | MS.gene56876:CDS |
| TGTGAGAGTGTCACATCCGG+CGG | 0.689754 | 8.1:+17636171 | MS.gene56876:CDS |
| ATTGTTGATATTATTCAACA+CGG | 0.694317 | 8.1:+17636450 | MS.gene56876:CDS |
| AAGGATAGTTCGGAAGACGA+CGG | 0.711418 | 8.1:+17636206 | MS.gene56876:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTGAATTAACTTTACTTAA+TGG | + | chr8.1:17636580-17636599 | MS.gene56876:intron | 15.0% |
| !!! | TTTCAGATTTATTTTTTGTT+TGG | + | chr8.1:17637004-17637023 | MS.gene56876:intron | 15.0% |
| !! | ATTAACTTTACTTAATGGTT+AGG | + | chr8.1:17636585-17636604 | MS.gene56876:intron | 20.0% |
| !! | ATTGTTGATATTATTCAACA+CGG | + | chr8.1:17636450-17636469 | MS.gene56876:CDS | 20.0% |
| !! | TTAACTTTACTTAATGGTTA+GGG | + | chr8.1:17636586-17636605 | MS.gene56876:intron | 20.0% |
| !!! | TATTTTTTGTTTGGTTTTGT+AGG | + | chr8.1:17637013-17637032 | MS.gene56876:intron | 20.0% |
| !!! | TTGTTGTGTTTTTGTTATTA+GGG | + | chr8.1:17636975-17636994 | MS.gene56876:intron | 20.0% |
| !!! | TTTGTTGTGTTTTTGTTATT+AGG | + | chr8.1:17636974-17636993 | MS.gene56876:intron | 20.0% |
| ! | TTGAAACTCATAACATATTC+AGG | - | chr8.1:17636907-17636926 | None:intergenic | 25.0% |
| AGTTCAGAAGAATATGATTC+TGG | + | chr8.1:17636814-17636833 | MS.gene56876:CDS | 30.0% | |
| GAATCATATTCTTCTGAACT+CGG | - | chr8.1:17636814-17636833 | None:intergenic | 30.0% | |
| TGTTTCGGTAAATTGTAGAT+TGG | - | chr8.1:17636114-17636133 | None:intergenic | 30.0% | |
| TTTCAGGAATCCTTGTAAAA+CGG | + | chr8.1:17636311-17636330 | MS.gene56876:CDS | 30.0% | |
| TTTGGTTATGTTCATAGCAA+TGG | + | chr8.1:17636474-17636493 | MS.gene56876:intron | 30.0% | |
| ! | GATATTATTCAACACGGTTT+TGG | + | chr8.1:17636456-17636475 | MS.gene56876:intron | 30.0% |
| AATGTAAAACACGTGTGGTA+CGG | + | chr8.1:17636408-17636427 | MS.gene56876:CDS | 35.0% | |
| AATTGCATAAAAGGCGAAGA+CGG | - | chr8.1:17637076-17637095 | None:intergenic | 35.0% | |
| ACTCCAAACAATGAACTCTT+TGG | - | chr8.1:17636860-17636879 | None:intergenic | 35.0% | |
| ATGCTAATGTAAAACACGTG+TGG | + | chr8.1:17636403-17636422 | MS.gene56876:CDS | 35.0% | |
| ATGGAAACAATATCAGATGG+AGG | - | chr8.1:17637133-17637152 | None:intergenic | 35.0% | |
| CTCCAAACAATGAACTCTTT+GGG | - | chr8.1:17636859-17636878 | None:intergenic | 35.0% | |
| GAATCCTTGTAAAACGGTAA+TGG | + | chr8.1:17636317-17636336 | MS.gene56876:CDS | 35.0% | |
| GCAATGGAAACAATATCAGA+TGG | - | chr8.1:17637136-17637155 | None:intergenic | 35.0% | |
| ! | AGAAGAATATGATTCTGGAG+TGG | + | chr8.1:17636819-17636838 | MS.gene56876:CDS | 35.0% |
| ! | ATGTTGACGAACAAGGTTTT+AGG | + | chr8.1:17636719-17636738 | MS.gene56876:intron | 35.0% |
| ! | CAAGTTTCACAAGGAGTATA+GGG | + | chr8.1:17637156-17637175 | MS.gene56876:CDS | 35.0% |
| ! | TTCAAACTTGCTTCCAACAA+AGG | + | chr8.1:17636922-17636941 | MS.gene56876:CDS | 35.0% |
| AAACGAATCTGCTTCGGATT+AGG | - | chr8.1:17636248-17636267 | None:intergenic | 40.0% | |
| AACCACAAACGAATCTGCTT+CGG | - | chr8.1:17636254-17636273 | None:intergenic | 40.0% | |
| AGAACTGATGTTGACGAACA+AGG | + | chr8.1:17636712-17636731 | MS.gene56876:intron | 40.0% | |
| AGAGTCGGGAATTGCATAAA+AGG | - | chr8.1:17637085-17637104 | None:intergenic | 40.0% | |
| ATTAACTCGTGCCTTTCAAG+TGG | - | chr8.1:17636525-17636544 | None:intergenic | 40.0% | |
| CAAACGATTCTCCACTTGAA+AGG | + | chr8.1:17636511-17636530 | MS.gene56876:intron | 40.0% | |
| CAAGTACACACTACCTTTGT+TGG | - | chr8.1:17636938-17636957 | None:intergenic | 40.0% | |
| CCTATACTCCTTGTGAAACT+TGG | - | chr8.1:17637158-17637177 | None:intergenic | 40.0% | |
| CTCCCAAAGAGTTCATTGTT+TGG | + | chr8.1:17636854-17636873 | MS.gene56876:CDS | 40.0% | |
| CTGAAAATCGCTACTCCATA+GGG | - | chr8.1:17636297-17636316 | None:intergenic | 40.0% | |
| GGAGTATAGGGTAAGTGTTT+CGG | + | chr8.1:17637168-17637187 | MS.gene56876:CDS | 40.0% | |
| TCGTGTGATCATGGGAAAAT+TGG | + | chr8.1:17636756-17636775 | MS.gene56876:intron | 40.0% | |
| TGTGATCATGGGAAAATTGG+AGG | + | chr8.1:17636759-17636778 | MS.gene56876:intron | 40.0% | |
| TTCCATTGCCAAGTTTCACA+AGG | + | chr8.1:17637147-17637166 | MS.gene56876:CDS | 40.0% | |
| TTGCTTTGTCGTGTGATCAT+GGG | + | chr8.1:17636748-17636767 | MS.gene56876:intron | 40.0% | |
| TTTGTAGGACATGAGAAGGT+TGG | + | chr8.1:17637028-17637047 | MS.gene56876:intron | 40.0% | |
| TTTGTGGTTTAAGTGCGCAA+GGG | + | chr8.1:17636265-17636284 | MS.gene56876:CDS | 40.0% | |
| ! | CCAAGTTTCACAAGGAGTAT+AGG | + | chr8.1:17637155-17637174 | MS.gene56876:CDS | 40.0% |
| ! | CTTTCAAGTGGAGAATCGTT+TGG | - | chr8.1:17636513-17636532 | None:intergenic | 40.0% |
| ! | TGTGTACTTGTGTGTTGTTG+TGG | + | chr8.1:17636948-17636967 | MS.gene56876:intron | 40.0% |
| !! | TGTGCCATTACCGTTTTACA+AGG | - | chr8.1:17636324-17636343 | None:intergenic | 40.0% |
| !!! | TGGTTTTGTAGGACATGAGA+AGG | + | chr8.1:17637024-17637043 | MS.gene56876:intron | 40.0% |
| AAAGCGCAGAAATCAGAGTC+GGG | - | chr8.1:17637099-17637118 | None:intergenic | 45.0% | |
| AAGGATAGTTCGGAAGACGA+CGG | + | chr8.1:17636206-17636225 | MS.gene56876:CDS | 45.0% | |
| ACGATTCCCGAAGGATAGTT+CGG | + | chr8.1:17636196-17636215 | MS.gene56876:CDS | 45.0% | |
| ATCCGAAGCAGATTCGTTTG+TGG | + | chr8.1:17636249-17636268 | MS.gene56876:CDS | 45.0% | |
| ATGAGAAGGTTGGAGTTGGA+GGG | + | chr8.1:17637038-17637057 | MS.gene56876:CDS | 45.0% | |
| CCTGAAAATCGCTACTCCAT+AGG | - | chr8.1:17636298-17636317 | None:intergenic | 45.0% | |
| CTCCTTGTGAAACTTGGCAA+TGG | - | chr8.1:17637152-17637171 | None:intergenic | 45.0% | |
| GGATGTGACACTCTCACAAT+CGG | - | chr8.1:17636169-17636188 | None:intergenic | 45.0% | |
| GTTTGTGGTTTAAGTGCGCA+AGG | + | chr8.1:17636264-17636283 | MS.gene56876:CDS | 45.0% | |
| TAGGGTAAGTGTTTCGGACT+TGG | + | chr8.1:17637174-17637193 | MS.gene56876:CDS | 45.0% | |
| TCGTCTTCCGAACTATCCTT+CGG | - | chr8.1:17636206-17636225 | None:intergenic | 45.0% | |
| TTACCGAAACATGATTCCGC+CGG | + | chr8.1:17636123-17636142 | MS.gene56876:CDS | 45.0% | |
| ! | CCTATGGAGTAGCGATTTTC+AGG | + | chr8.1:17636295-17636314 | MS.gene56876:CDS | 45.0% |
| ! | GAAAGCGCAGAAATCAGAGT+CGG | - | chr8.1:17637100-17637119 | None:intergenic | 45.0% |
| ! | GTTGCTTTGTCGTGTGATCA+TGG | + | chr8.1:17636747-17636766 | MS.gene56876:intron | 45.0% |
| !! | AATCGCTGATTCATCTTCGC+CGG | - | chr8.1:17636145-17636164 | None:intergenic | 45.0% |
| !! | GATTGTGAGAGTGTCACATC+CGG | + | chr8.1:17636168-17636187 | MS.gene56876:CDS | 45.0% |
| ATAGTTCGGAAGACGACGGA+GGG | + | chr8.1:17636210-17636229 | MS.gene56876:CDS | 50.0% | |
| CATGAGAAGGTTGGAGTTGG+AGG | + | chr8.1:17637037-17637056 | MS.gene56876:CDS | 50.0% | |
| CGTCTTCCGAACTATCCTTC+GGG | - | chr8.1:17636205-17636224 | None:intergenic | 50.0% | |
| GAACTATCCTTCGGGAATCG+TGG | - | chr8.1:17636197-17636216 | None:intergenic | 50.0% | |
| GGACATGAGAAGGTTGGAGT+TGG | + | chr8.1:17637034-17637053 | MS.gene56876:intron | 50.0% | |
| ! | AAACGGTAATGGCACAAGCG+AGG | + | chr8.1:17636328-17636347 | MS.gene56876:CDS | 50.0% |
| ! | GTTTGAGATCTTCGCACGTG+CGG | + | chr8.1:17636359-17636378 | MS.gene56876:CDS | 50.0% |
| AAATTGGAGGCTGTGCCTGC+AGG | + | chr8.1:17636772-17636791 | MS.gene56876:intron | 55.0% | |
| GATAGTTCGGAAGACGACGG+AGG | + | chr8.1:17636209-17636228 | MS.gene56876:CDS | 55.0% | |
| GCGCAAGGGTTGAAACCCTA+TGG | + | chr8.1:17636279-17636298 | MS.gene56876:CDS | 55.0% | |
| TCGCCGGCGGAATCATGTTT+CGG | - | chr8.1:17636129-17636148 | None:intergenic | 55.0% | |
| ! | CTGCGTTGATCAGAACCTGC+AGG | - | chr8.1:17636790-17636809 | None:intergenic | 55.0% |
| !! | TGTGAGAGTGTCACATCCGG+CGG | + | chr8.1:17636171-17636190 | MS.gene56876:CDS | 55.0% |
| CGGTGGCTAAAATGCGCGGT+GGG | + | chr8.1:17636379-17636398 | MS.gene56876:CDS | 60.0% | |
| CGTGCGGTGGCTAAAATGCG+CGG | + | chr8.1:17636375-17636394 | MS.gene56876:CDS | 60.0% | |
| TGAGATCTTCGCACGTGCGG+TGG | + | chr8.1:17636362-17636381 | MS.gene56876:CDS | 60.0% | |
| !! | CGCTGATTCATCTTCGCCGG+CGG | - | chr8.1:17636142-17636161 | None:intergenic | 60.0% |
| GCGGTGGCTAAAATGCGCGG+TGG | + | chr8.1:17636378-17636397 | MS.gene56876:CDS | 65.0% | |
| CCTTCGGGAATCGTGGCCGC+CGG | - | chr8.1:17636190-17636209 | None:intergenic | 70.0% | |
| CCGGCGGCCACGATTCCCGA+AGG | + | chr8.1:17636187-17636206 | MS.gene56876:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.1 | gene | 17636102 | 17637201 | 17636102 | ID=MS.gene56876 |
| chr8.1 | mRNA | 17636102 | 17637201 | 17636102 | ID=MS.gene56876.t1;Parent=MS.gene56876 |
| chr8.1 | exon | 17636102 | 17636471 | 17636102 | ID=MS.gene56876.t1.exon1;Parent=MS.gene56876.t1 |
| chr8.1 | CDS | 17636102 | 17636471 | 17636102 | ID=cds.MS.gene56876.t1;Parent=MS.gene56876.t1 |
| chr8.1 | exon | 17636794 | 17636943 | 17636794 | ID=MS.gene56876.t1.exon2;Parent=MS.gene56876.t1 |
| chr8.1 | CDS | 17636794 | 17636943 | 17636794 | ID=cds.MS.gene56876.t1;Parent=MS.gene56876.t1 |
| chr8.1 | exon | 17637035 | 17637201 | 17637035 | ID=MS.gene56876.t1.exon3;Parent=MS.gene56876.t1 |
| chr8.1 | CDS | 17637035 | 17637201 | 17637035 | ID=cds.MS.gene56876.t1;Parent=MS.gene56876.t1 |
| Gene Sequence |
| Protein sequence |
