Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene051823.t1 | XP_024637946.1 | 93.7 | 443 | 27 | 1 | 55 | 497 | 152 | 593 | 6.90E-224 | 786.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene051823.t1 | A0A072V2V5 | 93.7 | 443 | 27 | 1 | 55 | 497 | 152 | 593 | 5.0e-224 | 786.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene051821 | MS.gene051823 | 0.939225 | 1.82E-99 | -1.69E-46 |
| MS.gene051823 | MS.gene052016 | 0.81228 | 4.59E-51 | -1.69E-46 |
| MS.gene051823 | MS.gene053726 | 0.801266 | 9.76E-49 | -1.69E-46 |
| MS.gene051823 | MS.gene054641 | 0.808977 | 2.38E-50 | -1.69E-46 |
| MS.gene051823 | MS.gene054892 | 0.818906 | 1.53E-52 | -1.69E-46 |
| MS.gene051823 | MS.gene054893 | 0.820594 | 6.32E-53 | -1.69E-46 |
| MS.gene051823 | MS.gene055803 | 0.820635 | 6.18E-53 | -1.69E-46 |
| MS.gene051823 | MS.gene060522 | 0.823095 | 1.67E-53 | -1.69E-46 |
| MS.gene051823 | MS.gene066879 | 0.81364 | 2.31E-51 | -1.69E-46 |
| MS.gene051823 | MS.gene069807 | 0.807254 | 5.53E-50 | -1.69E-46 |
| MS.gene051823 | MS.gene072325 | 0.832686 | 8.20E-56 | -1.69E-46 |
| MS.gene051823 | MS.gene072326 | 0.851597 | 8.00E-61 | -1.69E-46 |
| MS.gene051823 | MS.gene09151 | 0.80217 | 6.37E-49 | -1.69E-46 |
| MS.gene051823 | MS.gene09726 | 0.80847 | 3.05E-50 | -1.69E-46 |
| MS.gene051823 | MS.gene09728 | 0.808556 | 2.92E-50 | -1.69E-46 |
| MS.gene051823 | MS.gene09922 | 0.81096 | 8.89E-51 | -1.69E-46 |
| MS.gene051823 | MS.gene21535 | 0.808001 | 3.84E-50 | -1.69E-46 |
| MS.gene051823 | MS.gene22661 | 0.805417 | 1.35E-49 | -1.69E-46 |
| MS.gene051823 | MS.gene24824 | 0.921769 | 2.34E-88 | -1.69E-46 |
| MS.gene051823 | MS.gene24825 | 0.884289 | 2.18E-71 | -1.69E-46 |
| MS.gene051823 | MS.gene32929 | 0.818441 | 1.96E-52 | -1.69E-46 |
| MS.gene051823 | MS.gene38542 | 0.841956 | 3.47E-58 | -1.69E-46 |
| MS.gene051823 | MS.gene38716 | 0.810479 | 1.13E-50 | -1.69E-46 |
| MS.gene051823 | MS.gene42516 | 0.809134 | 2.20E-50 | -1.69E-46 |
| MS.gene051823 | MS.gene43381 | 0.825042 | 5.81E-54 | -1.69E-46 |
| MS.gene051823 | MS.gene47967 | 0.811933 | 5.46E-51 | -1.69E-46 |
| MS.gene051823 | MS.gene49383 | 0.801672 | 8.06E-49 | -1.69E-46 |
| MS.gene051823 | MS.gene56876 | 0.803183 | 3.94E-49 | -1.69E-46 |
| MS.gene051823 | MS.gene59435 | 0.809192 | 2.14E-50 | -1.69E-46 |
| MS.gene051823 | MS.gene66439 | 0.806265 | 8.95E-50 | -1.69E-46 |
| MS.gene051823 | MS.gene68028 | 0.826041 | 3.37E-54 | -1.69E-46 |
| MS.gene051823 | MS.gene69750 | 0.823253 | 1.53E-53 | -1.69E-46 |
| MS.gene051823 | MS.gene73678 | 0.806836 | 6.78E-50 | -1.69E-46 |
| MS.gene051823 | MS.gene75798 | 0.808899 | 2.47E-50 | -1.69E-46 |
| MS.gene051823 | MS.gene79770 | 0.800216 | 1.60E-48 | -1.69E-46 |
| MS.gene051823 | MS.gene80557 | 0.831545 | 1.57E-55 | -1.69E-46 |
| MS.gene051823 | MS.gene80558 | 0.807346 | 5.29E-50 | -1.69E-46 |
| MS.gene051823 | MS.gene84703 | 0.805761 | 1.14E-49 | -1.69E-46 |
| MS.gene051823 | MS.gene84733 | 0.807417 | 5.11E-50 | -1.69E-46 |
| MS.gene051823 | MS.gene84734 | 0.810528 | 1.10E-50 | -1.69E-46 |
| MS.gene051823 | MS.gene84866 | 0.80178 | 7.66E-49 | -1.69E-46 |
| MS.gene051823 | MS.gene85281 | 0.811841 | 5.72E-51 | -1.69E-46 |
| MS.gene051823 | MS.gene90922 | 0.820105 | 8.18E-53 | -1.69E-46 |
| MS.gene051823 | MS.gene92076 | 0.831697 | 1.44E-55 | -1.69E-46 |
| MS.gene051823 | MS.gene98721 | 0.812986 | 3.22E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene051823.t1 | MTR_4g125440 | 94.200 | 500 | 23 | 3 | 1 | 497 | 97 | 593 | 0.0 | 945 |
| MS.gene051823.t1 | MTR_4g125440 | 94.200 | 500 | 23 | 3 | 1 | 497 | 97 | 593 | 0.0 | 943 |
| MS.gene051823.t1 | MTR_2g041610 | 50.704 | 497 | 211 | 9 | 11 | 497 | 126 | 598 | 1.10e-154 | 454 |
| MS.gene051823.t1 | MTR_2g041610 | 50.905 | 497 | 210 | 9 | 11 | 497 | 126 | 598 | 2.98e-153 | 453 |
| MS.gene051823.t1 | MTR_4g125410 | 83.036 | 224 | 38 | 0 | 274 | 497 | 134 | 357 | 4.52e-120 | 360 |
| MS.gene051823.t1 | MTR_4g125430 | 61.852 | 270 | 73 | 4 | 9 | 274 | 73 | 316 | 3.17e-93 | 287 |
| MS.gene051823.t1 | MTR_4g125390 | 44.290 | 359 | 160 | 9 | 112 | 467 | 32 | 353 | 1.66e-68 | 224 |
| MS.gene051823.t1 | MTR_3g435660 | 56.109 | 221 | 78 | 4 | 37 | 257 | 46 | 247 | 1.39e-67 | 218 |
| MS.gene051823.t1 | MTR_1g114610 | 30.811 | 185 | 123 | 3 | 273 | 457 | 162 | 341 | 1.52e-14 | 75.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene051823.t1 | AT2G06040 | 49.637 | 413 | 184 | 6 | 94 | 497 | 281 | 678 | 2.66e-121 | 373 |
| MS.gene051823.t1 | AT5G21900 | 40.385 | 312 | 185 | 1 | 187 | 497 | 140 | 451 | 1.12e-60 | 208 |
| MS.gene051823.t1 | AT5G21900 | 37.500 | 296 | 184 | 1 | 187 | 481 | 140 | 435 | 3.41e-51 | 180 |
| MS.gene051823.t1 | AT5G23340 | 32.203 | 177 | 115 | 3 | 273 | 449 | 152 | 323 | 4.38e-12 | 68.2 |
Find 87 sgRNAs with CRISPR-Local
Find 137 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATGAGTGGTTTCTTGCCTTT+TGG | 0.196004 | 8.2:-7293044 | None:intergenic |
| GGAACATTGACTTAGATTTA+TGG | 0.211918 | 8.2:-7294232 | None:intergenic |
| TTGTTAAGGAATCCTTTATT+TGG | 0.218045 | 8.2:+7293477 | MS.gene051823:CDS |
| CTCTTGATCTTATGAACTTA+TGG | 0.218689 | 8.2:+7294803 | MS.gene051823:CDS |
| AAATCAAATTTCATTGGATT+TGG | 0.235626 | 8.2:+7293148 | MS.gene051823:CDS |
| TTTGGTGAAGGGAAGGTTTA+GGG | 0.277701 | 8.2:+7293523 | MS.gene051823:CDS |
| AATATTCTGGCTGATTCATT+AGG | 0.302835 | 8.2:+7294276 | MS.gene051823:CDS |
| GCTTGCCGTCTTACTGATAA+GGG | 0.308427 | 8.2:+7294171 | MS.gene051823:CDS |
| TGTTAAGGAATCCTTTATTT+GGG | 0.315948 | 8.2:+7293478 | MS.gene051823:CDS |
| ATTTGGTGAAGGGAAGGTTT+AGG | 0.331229 | 8.2:+7293522 | MS.gene051823:CDS |
| CTCGATCTGCAGAAATTTGA+CGG | 0.337852 | 8.2:+7294735 | MS.gene051823:intron |
| ACCTCTGCCGCAATCCATTC+AGG | 0.343022 | 8.2:+7294887 | MS.gene051823:CDS |
| GAAAAGGAACGGAGAAGATT+TGG | 0.343662 | 8.2:+7293505 | MS.gene051823:CDS |
| GTGGGTTTCCTACTCATATT+CGG | 0.345183 | 8.2:+7293702 | MS.gene051823:CDS |
| AGCTGAAAATCAAATTTCAT+TGG | 0.352025 | 8.2:+7293142 | MS.gene051823:CDS |
| GAAGAATTCACTAAATGTTT+CGG | 0.369076 | 8.2:+7293752 | MS.gene051823:CDS |
| GATGGAATGGTTTCACTTGA+TGG | 0.377697 | 8.2:+7293593 | MS.gene051823:CDS |
| GGTTTCACTTGATGGTGTTT+CGG | 0.380171 | 8.2:+7293601 | MS.gene051823:CDS |
| TGCTTGCCGTCTTACTGATA+AGG | 0.380416 | 8.2:+7294170 | MS.gene051823:CDS |
| ATATGCTAGTCTTAATATTC+TGG | 0.383480 | 8.2:+7294263 | MS.gene051823:CDS |
| AAATTGACCGATTTAACTAT+AGG | 0.383538 | 8.2:+7294826 | MS.gene051823:CDS |
| TAATGTACATACCTCTAGTA+TGG | 0.392894 | 8.2:-7293789 | None:intergenic |
| AGAGACATTTCTTGCAAAGA+AGG | 0.395958 | 8.2:-7293548 | None:intergenic |
| AAGTTCTTCCAAGGATTTGC+CGG | 0.415989 | 8.2:-7295359 | None:intergenic |
| CACTAAATGTTTCGGAATGT+TGG | 0.424026 | 8.2:+7293760 | MS.gene051823:CDS |
| TGATAAGGGGTTGCAGCTAC+TGG | 0.429928 | 8.2:+7294185 | MS.gene051823:CDS |
| AAGATATCCTATAGTTAAAT+CGG | 0.432326 | 8.2:-7294833 | None:intergenic |
| ACCTGAATGGATTGCGGCAG+AGG | 0.435528 | 8.2:-7294888 | None:intergenic |
| GCTTTGATTGCTTCAGAGAA+AGG | 0.436946 | 8.2:-7293416 | None:intergenic |
| TGCATGTGGTCAGAATATTA+AGG | 0.440998 | 8.2:+7294449 | MS.gene051823:CDS |
| CCTTTATTTGGGTTCCGAAA+AGG | 0.447400 | 8.2:+7293489 | MS.gene051823:CDS |
| TGATGCTGCACTAATCTTGT+CGG | 0.450638 | 8.2:+7294341 | MS.gene051823:CDS |
| TGGAAGAGGAAGAAGATTCA+TGG | 0.466185 | 8.2:-7292992 | None:intergenic |
| ACGTGTCAATTCGTAGAAAT+CGG | 0.472613 | 8.2:+7293246 | MS.gene051823:CDS |
| TTCGGCTTAAAGATTGCTCC+TGG | 0.473844 | 8.2:+7293720 | MS.gene051823:CDS |
| GGAGATGACCGGCAAATCCT+TGG | 0.478721 | 8.2:+7295351 | MS.gene051823:CDS |
| AGATCAAGAGCCTGCAGTCC+GGG | 0.489304 | 8.2:-7294790 | None:intergenic |
| ATTGCTTCAGAGAAAGGTGT+TGG | 0.491476 | 8.2:-7293410 | None:intergenic |
| GAAGAAGATTCATGGGGTAA+TGG | 0.497567 | 8.2:-7292984 | None:intergenic |
| TGCTAACCATGCTGATGGAA+TGG | 0.498656 | 8.2:+7293580 | MS.gene051823:CDS |
| ACATGAAATTGACGATAACT+TGG | 0.501090 | 8.2:+7293358 | MS.gene051823:CDS |
| ATTCTTGCTAACCATGCTGA+TGG | 0.505214 | 8.2:+7293575 | MS.gene051823:CDS |
| CAAACAAAGGCTTAGCGCAT+TGG | 0.507209 | 8.2:+7293631 | MS.gene051823:CDS |
| ATATACATTACTTTCTACAT+TGG | 0.509772 | 8.2:+7294098 | MS.gene051823:CDS |
| GTTAAGTGAAAGTTCTTCCA+AGG | 0.510904 | 8.2:-7295368 | None:intergenic |
| TACACACTGTCCCGGACTGC+AGG | 0.511413 | 8.2:+7294780 | MS.gene051823:CDS |
| AAGATCAAGAGCCTGCAGTC+CGG | 0.512184 | 8.2:-7294791 | None:intergenic |
| TTCTTGAACTACTTCTAAGT+GGG | 0.518300 | 8.2:+7293684 | MS.gene051823:CDS |
| TTTCTTGAACTACTTCTAAG+TGG | 0.520179 | 8.2:+7293683 | MS.gene051823:CDS |
| ATAAACTTATCACAAACAGT+TGG | 0.520326 | 8.2:-7294411 | None:intergenic |
| AACGGAGAAGATTTGGTGAA+GGG | 0.523277 | 8.2:+7293512 | MS.gene051823:CDS |
| AAAACAAGAGACCACCTGAA+TGG | 0.533318 | 8.2:-7294901 | None:intergenic |
| GTCATTGCTACACACTGTCC+CGG | 0.537095 | 8.2:+7294772 | MS.gene051823:CDS |
| TTAGAAGTGTTATCACTAGC+TGG | 0.543668 | 8.2:+7294384 | MS.gene051823:CDS |
| GGAAGAGGAAGAAGATTCAT+GGG | 0.544879 | 8.2:-7292991 | None:intergenic |
| GAGAAGATTTGGTGAAGGGA+AGG | 0.547684 | 8.2:+7293516 | MS.gene051823:CDS |
| TTGATTAGTCTATCCCTCAC+TGG | 0.552362 | 8.2:+7294147 | MS.gene051823:CDS |
| AAGACTAGCATATGTGAGAA+GGG | 0.561550 | 8.2:-7294253 | None:intergenic |
| TAAGACTAGCATATGTGAGA+AGG | 0.562795 | 8.2:-7294254 | None:intergenic |
| ATCAATCTAGACAAGCAGCT+TGG | 0.566575 | 8.2:-7294129 | None:intergenic |
| CATGAAGTTGATGCTGATGA+TGG | 0.568513 | 8.2:+7293383 | MS.gene051823:CDS |
| GAATTCTTCCTCTGTCAACC+AGG | 0.572099 | 8.2:-7293738 | None:intergenic |
| ATTTGGGTTCCGAAAAGGAA+CGG | 0.581845 | 8.2:+7293494 | MS.gene051823:CDS |
| GAACGGAGAAGATTTGGTGA+AGG | 0.582661 | 8.2:+7293511 | MS.gene051823:CDS |
| CAATTCGTAGAAATCGGTAC+AGG | 0.584763 | 8.2:+7293252 | MS.gene051823:CDS |
| TGATGAAGATGATCAGAGGA+AGG | 0.587981 | 8.2:+7293115 | MS.gene051823:CDS |
| TCTTTAAGCCGAATATGAGT+AGG | 0.588830 | 8.2:-7293710 | None:intergenic |
| TTTCGGATGAGCTCAAACAA+AGG | 0.594265 | 8.2:+7293618 | MS.gene051823:CDS |
| TTATCATCATCATCAATGAG+TGG | 0.602880 | 8.2:-7293059 | None:intergenic |
| CTTGCCGTCTTACTGATAAG+GGG | 0.612726 | 8.2:+7294172 | MS.gene051823:CDS |
| AAGACGGCAAGCACCAGTGA+GGG | 0.627353 | 8.2:-7294160 | None:intergenic |
| CTGTTATAACTCGTCCACAC+TGG | 0.634753 | 8.2:-7294074 | None:intergenic |
| GTGAAACCATTCCATCAGCA+TGG | 0.636782 | 8.2:-7293586 | None:intergenic |
| GCAACCCCTTATCAGTAAGA+CGG | 0.637906 | 8.2:-7294176 | None:intergenic |
| GTTGGACACTTCCATACTAG+AGG | 0.638302 | 8.2:+7293778 | MS.gene051823:CDS |
| GTGATGATGAAGATGATCAG+AGG | 0.644752 | 8.2:+7293111 | MS.gene051823:CDS |
| AAGAGTTACATCATTGCATG+TGG | 0.660843 | 8.2:+7294435 | MS.gene051823:CDS |
| AGATTGCTCCTGGTTGACAG+AGG | 0.662635 | 8.2:+7293730 | MS.gene051823:CDS |
| ACTGAAACTAATGATAGCGA+TGG | 0.669764 | 8.2:+7293200 | MS.gene051823:CDS |
| GAGACCACCTGAATGGATTG+CGG | 0.672864 | 8.2:-7294894 | None:intergenic |
| TGAAGATGATCATCATGCGG+CGG | 0.676628 | 8.2:+7293334 | MS.gene051823:CDS |
| ATTTCTACGAATTGACACGT+TGG | 0.678256 | 8.2:-7293243 | None:intergenic |
| TAAGACGGCAAGCACCAGTG+AGG | 0.700208 | 8.2:-7294161 | None:intergenic |
| GAATGAAGATGATCATCATG+CGG | 0.700277 | 8.2:+7293331 | MS.gene051823:CDS |
| GAAGAGGAAGAAGATTCATG+GGG | 0.700863 | 8.2:-7292990 | None:intergenic |
| ATCACTGTCACTGATAACGA+TGG | 0.706586 | 8.2:-7293093 | None:intergenic |
| GTGCTGCAACTTGACCAGTG+TGG | 0.740382 | 8.2:+7294060 | MS.gene051823:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAATATTTTCACAAAGTAAA+CGG | - | chr8.2:7294568-7294587 | None:intergenic | 15.0% |
| !!! | ATATTTTTTATTACTATGGT+CGG | + | chr8.2:7294017-7294036 | MS.gene051823:intron | 15.0% |
| !!! | GATGATATTTTTTATTACTA+TGG | + | chr8.2:7294013-7294032 | MS.gene051823:intron | 15.0% |
| !!! | TATATTTCATTTTGTTTTCA+AGG | + | chr8.2:7295160-7295179 | MS.gene051823:intron | 15.0% |
| !! | AAATCAAATTTCATTGGATT+TGG | + | chr8.2:7293148-7293167 | MS.gene051823:CDS | 20.0% |
| !! | AAGATATCCTATAGTTAAAT+CGG | - | chr8.2:7294836-7294855 | None:intergenic | 20.0% |
| !! | ATATACATTACTTTCTACAT+TGG | + | chr8.2:7294098-7294117 | MS.gene051823:CDS | 20.0% |
| !! | ATGTGATAATATATTAGGAT+TGG | + | chr8.2:7295008-7295027 | MS.gene051823:intron | 20.0% |
| !! | CGTTTATGTGATAATATATT+AGG | + | chr8.2:7295003-7295022 | MS.gene051823:intron | 20.0% |
| !! | TGGTAATAAGATATATAGAA+TGG | - | chr8.2:7295197-7295216 | None:intergenic | 20.0% |
| !!! | TTGTGTGAATATATTTTAGT+TGG | + | chr8.2:7293980-7293999 | MS.gene051823:intron | 20.0% |
| ! | AAACTTATCATTTCGTCTAT+TGG | + | chr8.2:7294703-7294722 | MS.gene051823:intron | 25.0% |
| ! | AAGTTAAGTTATTCAGCAAT+TGG | - | chr8.2:7295293-7295312 | None:intergenic | 25.0% |
| ! | AGCTGAAAATCAAATTTCAT+TGG | + | chr8.2:7293142-7293161 | MS.gene051823:CDS | 25.0% |
| ! | ATAAAAGACATATGAATGAC+AGG | - | chr8.2:7293948-7293967 | None:intergenic | 25.0% |
| ! | ATAAACTTATCACAAACAGT+TGG | - | chr8.2:7294414-7294433 | None:intergenic | 25.0% |
| ! | GAAGAATTCACTAAATGTTT+CGG | + | chr8.2:7293752-7293771 | MS.gene051823:CDS | 25.0% |
| ! | TACTTGTTTCATATAGCATT+TGG | + | chr8.2:7293816-7293835 | MS.gene051823:intron | 25.0% |
| ! | TTATTCAGCAATTGGAATTT+AGG | - | chr8.2:7295285-7295304 | None:intergenic | 25.0% |
| ! | TTGTTAAGGAATCCTTTATT+TGG | + | chr8.2:7293477-7293496 | MS.gene051823:CDS | 25.0% |
| !! | AAATTGACCGATTTAACTAT+AGG | + | chr8.2:7294826-7294845 | MS.gene051823:CDS | 25.0% |
| !! | CTTAAAACTCTACAACTTTT+TGG | + | chr8.2:7293019-7293038 | MS.gene051823:CDS | 25.0% |
| !! | GAAATTCTAGCACAAATTTT+AGG | - | chr8.2:7294604-7294623 | None:intergenic | 25.0% |
| !! | GAGTATTGCTATTATATGTA+TGG | + | chr8.2:7295033-7295052 | MS.gene051823:intron | 25.0% |
| !! | TGTTAAGGAATCCTTTATTT+GGG | + | chr8.2:7293478-7293497 | MS.gene051823:CDS | 25.0% |
| !! | TTGCTATTATATGTATGGAT+TGG | + | chr8.2:7295038-7295057 | MS.gene051823:intron | 25.0% |
| !!! | ATATGCTAGTCTTAATATTC+TGG | + | chr8.2:7294263-7294282 | MS.gene051823:CDS | 25.0% |
| !!! | ATTATATGTATGGATTGGTA+TGG | + | chr8.2:7295043-7295062 | MS.gene051823:intron | 25.0% |
| !!! | ATTTTGTTTTCAAGGTTTTG+AGG | + | chr8.2:7295168-7295187 | MS.gene051823:intron | 25.0% |
| !!! | GTAATTTCTAGCTTTTTAGT+AGG | + | chr8.2:7294972-7294991 | MS.gene051823:intron | 25.0% |
| !!! | TAATTTTTCTAGTTCGAGAA+TGG | - | chr8.2:7295126-7295145 | None:intergenic | 25.0% |
| !!! | TTTTAAGTGAGTTATTGTGA+TGG | + | chr8.2:7294648-7294667 | MS.gene051823:intron | 25.0% |
| ACATATGAATGACAGGAATT+TGG | - | chr8.2:7293941-7293960 | None:intergenic | 30.0% | |
| ACATGAAATTGACGATAACT+TGG | + | chr8.2:7293358-7293377 | MS.gene051823:CDS | 30.0% | |
| ATTGCCAAAAGCAAGAAAAA+AGG | + | chr8.2:7293452-7293471 | MS.gene051823:CDS | 30.0% | |
| ATTGTTCGATCTTGATCAAA+TGG | + | chr8.2:7293880-7293899 | MS.gene051823:intron | 30.0% | |
| CTCTTGATCTTATGAACTTA+TGG | + | chr8.2:7294803-7294822 | MS.gene051823:CDS | 30.0% | |
| GCTAGAATTTCTTGTTAACA+AGG | + | chr8.2:7294613-7294632 | MS.gene051823:intron | 30.0% | |
| GGAACATTTATTTGTGGAAT+AGG | + | chr8.2:7294038-7294057 | MS.gene051823:intron | 30.0% | |
| TAATGTACATACCTCTAGTA+TGG | - | chr8.2:7293792-7293811 | None:intergenic | 30.0% | |
| TTATCATCATCATCAATGAG+TGG | - | chr8.2:7293062-7293081 | None:intergenic | 30.0% | |
| TTCTTGAACTACTTCTAAGT+GGG | + | chr8.2:7293684-7293703 | MS.gene051823:CDS | 30.0% | |
| TTGCCAAAAGCAAGAAAAAA+GGG | + | chr8.2:7293453-7293472 | MS.gene051823:CDS | 30.0% | |
| TTTCTTGAACTACTTCTAAG+TGG | + | chr8.2:7293683-7293702 | MS.gene051823:CDS | 30.0% | |
| ! | AATATTCTGGCTGATTCATT+AGG | + | chr8.2:7294276-7294295 | MS.gene051823:CDS | 30.0% |
| ! | TCCTTAGTCTTTCATTCTTA+AGG | + | chr8.2:7294540-7294559 | MS.gene051823:intron | 30.0% |
| !! | GGAACATTGACTTAGATTTA+TGG | - | chr8.2:7294235-7294254 | None:intergenic | 30.0% |
| !!! | TGGTATGGATTTTTTGCATT+TGG | + | chr8.2:7295058-7295077 | MS.gene051823:intron | 30.0% |
| !!! | TTTTTTGCATTTGGAATGTC+AGG | + | chr8.2:7295067-7295086 | MS.gene051823:intron | 30.0% |
| AAGACTAGCATATGTGAGAA+GGG | - | chr8.2:7294256-7294275 | None:intergenic | 35.0% | |
| AAGAGTTACATCATTGCATG+TGG | + | chr8.2:7294435-7294454 | MS.gene051823:CDS | 35.0% | |
| ACGTGTCAATTCGTAGAAAT+CGG | + | chr8.2:7293246-7293265 | MS.gene051823:CDS | 35.0% | |
| AGAGACATTTCTTGCAAAGA+AGG | - | chr8.2:7293551-7293570 | None:intergenic | 35.0% | |
| ATGGTCGGAACATTTATTTG+TGG | + | chr8.2:7294032-7294051 | MS.gene051823:intron | 35.0% | |
| ATTTCTACGAATTGACACGT+TGG | - | chr8.2:7293246-7293265 | None:intergenic | 35.0% | |
| CAAGAAAAAAGGGGTTGTTA+AGG | + | chr8.2:7293463-7293482 | MS.gene051823:CDS | 35.0% | |
| CACTAAATGTTTCGGAATGT+TGG | + | chr8.2:7293760-7293779 | MS.gene051823:CDS | 35.0% | |
| GAATGAAGATGATCATCATG+CGG | + | chr8.2:7293331-7293350 | MS.gene051823:CDS | 35.0% | |
| GCCTTAAGAATGAAAGACTA+AGG | - | chr8.2:7294544-7294563 | None:intergenic | 35.0% | |
| GTCAGGAATATTTCTTCATG+TGG | + | chr8.2:7295084-7295103 | MS.gene051823:intron | 35.0% | |
| GTTAAGTGAAAGTTCTTCCA+AGG | - | chr8.2:7295371-7295390 | None:intergenic | 35.0% | |
| TAAGACTAGCATATGTGAGA+AGG | - | chr8.2:7294257-7294276 | None:intergenic | 35.0% | |
| TCTTTAAGCCGAATATGAGT+AGG | - | chr8.2:7293713-7293732 | None:intergenic | 35.0% | |
| TGCATGTGGTCAGAATATTA+AGG | + | chr8.2:7294449-7294468 | MS.gene051823:CDS | 35.0% | |
| TGCCAAAAGCAAGAAAAAAG+GGG | + | chr8.2:7293454-7293473 | MS.gene051823:CDS | 35.0% | |
| ! | AAATCTTCTCCGTTCCTTTT+CGG | - | chr8.2:7293506-7293525 | None:intergenic | 35.0% |
| ! | ACTGAAACTAATGATAGCGA+TGG | + | chr8.2:7293200-7293219 | MS.gene051823:CDS | 35.0% |
| ! | TACAACTTTTTGGACCCAAA+AGG | + | chr8.2:7293029-7293048 | MS.gene051823:CDS | 35.0% |
| !! | TTAGAAGTGTTATCACTAGC+TGG | + | chr8.2:7294384-7294403 | MS.gene051823:CDS | 35.0% |
| !!! | AACCCCTTTTTTCTTGCTTT+TGG | - | chr8.2:7293459-7293478 | None:intergenic | 35.0% |
| !!! | TGAAGCAATTGCTGCTTTTT+TGG | + | chr8.2:7295330-7295349 | MS.gene051823:CDS | 35.0% |
| AAAACAAGAGACCACCTGAA+TGG | - | chr8.2:7294904-7294923 | None:intergenic | 40.0% | |
| AAGTTCTTCCAAGGATTTGC+CGG | - | chr8.2:7295362-7295381 | None:intergenic | 40.0% | |
| ATCAATCTAGACAAGCAGCT+TGG | - | chr8.2:7294132-7294151 | None:intergenic | 40.0% | |
| ATTCTTGCTAACCATGCTGA+TGG | + | chr8.2:7293575-7293594 | MS.gene051823:CDS | 40.0% | |
| CAATTCGTAGAAATCGGTAC+AGG | + | chr8.2:7293252-7293271 | MS.gene051823:CDS | 40.0% | |
| CTCGATCTGCAGAAATTTGA+CGG | + | chr8.2:7294735-7294754 | MS.gene051823:intron | 40.0% | |
| GAAAAGGAACGGAGAAGATT+TGG | + | chr8.2:7293505-7293524 | MS.gene051823:CDS | 40.0% | |
| GAAGAAGATTCATGGGGTAA+TGG | - | chr8.2:7292987-7293006 | None:intergenic | 40.0% | |
| GAAGAGGAAGAAGATTCATG+GGG | - | chr8.2:7292993-7293012 | None:intergenic | 40.0% | |
| GATGGAATGGTTTCACTTGA+TGG | + | chr8.2:7293593-7293612 | MS.gene051823:CDS | 40.0% | |
| GCTTTGATTGCTTCAGAGAA+AGG | - | chr8.2:7293419-7293438 | None:intergenic | 40.0% | |
| GGAAGAGGAAGAAGATTCAT+GGG | - | chr8.2:7292994-7293013 | None:intergenic | 40.0% | |
| GGACAGATCATGATTACATG+CGG | - | chr8.2:7295264-7295283 | None:intergenic | 40.0% | |
| GTGGGTTTCCTACTCATATT+CGG | + | chr8.2:7293702-7293721 | MS.gene051823:CDS | 40.0% | |
| TGATGAAGATGATCAGAGGA+AGG | + | chr8.2:7293115-7293134 | MS.gene051823:CDS | 40.0% | |
| TGATGCTGCACTAATCTTGT+CGG | + | chr8.2:7294341-7294360 | MS.gene051823:CDS | 40.0% | |
| TGGAAGAGGAAGAAGATTCA+TGG | - | chr8.2:7292995-7293014 | None:intergenic | 40.0% | |
| TTTCGGATGAGCTCAAACAA+AGG | + | chr8.2:7293618-7293637 | MS.gene051823:CDS | 40.0% | |
| TTTGGTGAAGGGAAGGTTTA+GGG | + | chr8.2:7293523-7293542 | MS.gene051823:CDS | 40.0% | |
| ! | ATCACTGTCACTGATAACGA+TGG | - | chr8.2:7293096-7293115 | None:intergenic | 40.0% |
| ! | ATGAGTGGTTTCTTGCCTTT+TGG | - | chr8.2:7293047-7293066 | None:intergenic | 40.0% |
| ! | ATTGCTTCAGAGAAAGGTGT+TGG | - | chr8.2:7293413-7293432 | None:intergenic | 40.0% |
| ! | ATTTGGGTTCCGAAAAGGAA+CGG | + | chr8.2:7293494-7293513 | MS.gene051823:CDS | 40.0% |
| ! | ATTTGGTGAAGGGAAGGTTT+AGG | + | chr8.2:7293522-7293541 | MS.gene051823:CDS | 40.0% |
| ! | CCTTTATTTGGGTTCCGAAA+AGG | + | chr8.2:7293489-7293508 | MS.gene051823:CDS | 40.0% |
| ! | CCTTTTCGGAACCCAAATAA+AGG | - | chr8.2:7293492-7293511 | None:intergenic | 40.0% |
| ! | GTGATGATGAAGATGATCAG+AGG | + | chr8.2:7293111-7293130 | MS.gene051823:CDS | 40.0% |
| ! | TGAGTGGTTTCTTGCCTTTT+GGG | - | chr8.2:7293046-7293065 | None:intergenic | 40.0% |
| !! | AACGGAGAAGATTTGGTGAA+GGG | + | chr8.2:7293512-7293531 | MS.gene051823:CDS | 40.0% |
| !! | CATGAAGTTGATGCTGATGA+TGG | + | chr8.2:7293383-7293402 | MS.gene051823:CDS | 40.0% |
| !! | GGTTTCACTTGATGGTGTTT+CGG | + | chr8.2:7293601-7293620 | MS.gene051823:CDS | 40.0% |
| !! | TTGATTAGTCTATCCCTCAC+TGG | + | chr8.2:7294147-7294166 | MS.gene051823:CDS | 40.0% |
| !!! | GTTGTAGAGTTTTAAGCGCT+TGG | - | chr8.2:7293015-7293034 | None:intergenic | 40.0% |
| CAAACAAAGGCTTAGCGCAT+TGG | + | chr8.2:7293631-7293650 | MS.gene051823:CDS | 45.0% | |
| CTGTTATAACTCGTCCACAC+TGG | - | chr8.2:7294077-7294096 | None:intergenic | 45.0% | |
| CTTGCCGTCTTACTGATAAG+GGG | + | chr8.2:7294172-7294191 | MS.gene051823:CDS | 45.0% | |
| GAATTCTTCCTCTGTCAACC+AGG | - | chr8.2:7293741-7293760 | None:intergenic | 45.0% | |
| GACACAATGCAGACGATACT+TGG | - | chr8.2:7295217-7295236 | None:intergenic | 45.0% | |
| GCAACCCCTTATCAGTAAGA+CGG | - | chr8.2:7294179-7294198 | None:intergenic | 45.0% | |
| GCTTGCCGTCTTACTGATAA+GGG | + | chr8.2:7294171-7294190 | MS.gene051823:CDS | 45.0% | |
| GTGAAACCATTCCATCAGCA+TGG | - | chr8.2:7293589-7293608 | None:intergenic | 45.0% | |
| GTTGGACACTTCCATACTAG+AGG | + | chr8.2:7293778-7293797 | MS.gene051823:CDS | 45.0% | |
| TGAAGATGATCATCATGCGG+CGG | + | chr8.2:7293334-7293353 | MS.gene051823:CDS | 45.0% | |
| TGCTAACCATGCTGATGGAA+TGG | + | chr8.2:7293580-7293599 | MS.gene051823:CDS | 45.0% | |
| TGCTTGCCGTCTTACTGATA+AGG | + | chr8.2:7294170-7294189 | MS.gene051823:CDS | 45.0% | |
| TTCGGCTTAAAGATTGCTCC+TGG | + | chr8.2:7293720-7293739 | MS.gene051823:CDS | 45.0% | |
| !! | GAACGGAGAAGATTTGGTGA+AGG | + | chr8.2:7293511-7293530 | MS.gene051823:CDS | 45.0% |
| !! | GAGAAGATTTGGTGAAGGGA+AGG | + | chr8.2:7293516-7293535 | MS.gene051823:CDS | 45.0% |
| !!! | GAGTTTTAAGCGCTTGGAAG+AGG | - | chr8.2:7293009-7293028 | None:intergenic | 45.0% |
| !!! | GCTGCTTTTTTGGAGATGAC+CGG | + | chr8.2:7295340-7295359 | MS.gene051823:CDS | 45.0% |
| AAGATCAAGAGCCTGCAGTC+CGG | - | chr8.2:7294794-7294813 | None:intergenic | 50.0% | |
| AGATTGCTCCTGGTTGACAG+AGG | + | chr8.2:7293730-7293749 | MS.gene051823:CDS | 50.0% | |
| GTCATTGCTACACACTGTCC+CGG | + | chr8.2:7294772-7294791 | MS.gene051823:CDS | 50.0% | |
| GTGCGTACAGTCAGCTACAT+CGG | - | chr8.2:7293909-7293928 | None:intergenic | 50.0% | |
| TGATAAGGGGTTGCAGCTAC+TGG | + | chr8.2:7294185-7294204 | MS.gene051823:CDS | 50.0% | |
| !! | GAGACCACCTGAATGGATTG+CGG | - | chr8.2:7294897-7294916 | None:intergenic | 50.0% |
| AAGACGGCAAGCACCAGTGA+GGG | - | chr8.2:7294163-7294182 | None:intergenic | 55.0% | |
| ACCTCTGCCGCAATCCATTC+AGG | + | chr8.2:7294887-7294906 | MS.gene051823:CDS | 55.0% | |
| AGATCAAGAGCCTGCAGTCC+GGG | - | chr8.2:7294793-7294812 | None:intergenic | 55.0% | |
| CGTACAGTCAGCTACATCGG+TGG | - | chr8.2:7293906-7293925 | None:intergenic | 55.0% | |
| GGAGATGACCGGCAAATCCT+TGG | + | chr8.2:7295351-7295370 | MS.gene051823:CDS | 55.0% | |
| GTGCTGCAACTTGACCAGTG+TGG | + | chr8.2:7294060-7294079 | MS.gene051823:CDS | 55.0% | |
| TAAGACGGCAAGCACCAGTG+AGG | - | chr8.2:7294164-7294183 | None:intergenic | 55.0% | |
| TCTGCCGCAATCCATTCAGG+TGG | + | chr8.2:7294890-7294909 | MS.gene051823:intron | 55.0% | |
| !! | ACCTGAATGGATTGCGGCAG+AGG | - | chr8.2:7294891-7294910 | None:intergenic | 55.0% |
| TACACACTGTCCCGGACTGC+AGG | + | chr8.2:7294780-7294799 | MS.gene051823:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.2 | gene | 7292978 | 7295401 | 7292978 | ID=MS.gene051823 |
| chr8.2 | mRNA | 7292978 | 7295401 | 7292978 | ID=MS.gene051823.t1;Parent=MS.gene051823 |
| chr8.2 | exon | 7292978 | 7293799 | 7292978 | ID=MS.gene051823.t1.exon1;Parent=MS.gene051823.t1 |
| chr8.2 | CDS | 7292978 | 7293799 | 7292978 | ID=cds.MS.gene051823.t1;Parent=MS.gene051823.t1 |
| chr8.2 | exon | 7294060 | 7294493 | 7294060 | ID=MS.gene051823.t1.exon2;Parent=MS.gene051823.t1 |
| chr8.2 | CDS | 7294060 | 7294493 | 7294060 | ID=cds.MS.gene051823.t1;Parent=MS.gene051823.t1 |
| chr8.2 | exon | 7294747 | 7294908 | 7294747 | ID=MS.gene051823.t1.exon3;Parent=MS.gene051823.t1 |
| chr8.2 | CDS | 7294747 | 7294908 | 7294747 | ID=cds.MS.gene051823.t1;Parent=MS.gene051823.t1 |
| chr8.2 | exon | 7295327 | 7295401 | 7295327 | ID=MS.gene051823.t1.exon4;Parent=MS.gene051823.t1 |
| chr8.2 | CDS | 7295327 | 7295401 | 7295327 | ID=cds.MS.gene051823.t1;Parent=MS.gene051823.t1 |
| Gene Sequence |
| Protein sequence |
