Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene56897.t1 | XP_003608937.2 | 92.6 | 215 | 5 | 2 | 1 | 204 | 1 | 215 | 4.90E-99 | 370.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene56897.t1 | Q9SB04 | 63.0 | 173 | 51 | 4 | 6 | 166 | 3 | 174 | 8.8e-49 | 194.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene56897.t1 | G7JNT1 | 92.6 | 215 | 5 | 2 | 1 | 204 | 1 | 215 | 3.5e-99 | 370.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene56897.t1 | TR | Others |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene47429 | MS.gene56897 | PPI |
| MS.gene029745 | MS.gene56897 | PPI |
| MS.gene065401 | MS.gene56897 | PPI |
| MS.gene051416 | MS.gene56897 | PPI |
| MS.gene065402 | MS.gene56897 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene56897.t1 | MTR_4g106590 | 92.558 | 215 | 5 | 2 | 1 | 204 | 1 | 215 | 1.75e-138 | 385 |
| MS.gene56897.t1 | MTR_3g078613 | 67.757 | 214 | 46 | 6 | 1 | 204 | 1 | 201 | 7.31e-89 | 259 |
| MS.gene56897.t1 | MTR_3g078613 | 67.290 | 214 | 46 | 7 | 1 | 204 | 1 | 200 | 5.66e-86 | 252 |
| MS.gene56897.t1 | MTR_5g036480 | 65.278 | 144 | 36 | 3 | 25 | 155 | 15 | 157 | 3.18e-53 | 171 |
| MS.gene56897.t1 | MTR_1g049100 | 63.830 | 141 | 39 | 3 | 21 | 150 | 3 | 142 | 3.22e-52 | 166 |
| MS.gene56897.t1 | MTR_7g490310 | 50.920 | 163 | 61 | 4 | 21 | 165 | 4 | 165 | 2.81e-47 | 155 |
| MS.gene56897.t1 | MTR_8g038620 | 50.898 | 167 | 62 | 4 | 21 | 169 | 4 | 168 | 3.17e-46 | 150 |
| MS.gene56897.t1 | MTR_3g093860 | 52.632 | 133 | 49 | 3 | 27 | 147 | 19 | 149 | 7.05e-40 | 134 |
| MS.gene56897.t1 | MTR_3g015490 | 45.238 | 168 | 62 | 5 | 24 | 169 | 2 | 161 | 1.18e-35 | 123 |
| MS.gene56897.t1 | MTR_3g088630 | 45.333 | 150 | 53 | 4 | 25 | 147 | 21 | 168 | 1.32e-35 | 125 |
| MS.gene56897.t1 | MTR_6g007460 | 37.949 | 195 | 60 | 3 | 19 | 152 | 4 | 198 | 8.56e-32 | 114 |
| MS.gene56897.t1 | MTR_4g051330 | 49.351 | 77 | 39 | 0 | 93 | 169 | 74 | 150 | 1.32e-18 | 79.0 |
| MS.gene56897.t1 | MTR_8g024260 | 28.571 | 147 | 88 | 4 | 6 | 150 | 28 | 159 | 9.28e-12 | 63.5 |
| MS.gene56897.t1 | MTR_3g092780 | 27.184 | 103 | 74 | 1 | 72 | 174 | 102 | 203 | 1.92e-11 | 62.8 |
| MS.gene56897.t1 | MTR_3g092780 | 27.184 | 103 | 74 | 1 | 72 | 174 | 102 | 203 | 2.18e-11 | 62.8 |
| MS.gene56897.t1 | MTR_3g092780 | 34.211 | 76 | 49 | 1 | 72 | 147 | 102 | 176 | 5.48e-11 | 61.6 |
| MS.gene56897.t1 | MTR_3g092780 | 34.211 | 76 | 49 | 1 | 72 | 147 | 102 | 176 | 6.16e-11 | 61.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene56897.t1 | AT3G48100 | 61.453 | 179 | 56 | 4 | 5 | 171 | 2 | 179 | 1.26e-65 | 200 |
| MS.gene56897.t1 | AT5G62920 | 67.974 | 153 | 39 | 2 | 26 | 169 | 25 | 176 | 2.38e-62 | 192 |
| MS.gene56897.t1 | AT1G74890 | 66.443 | 149 | 37 | 4 | 25 | 161 | 17 | 164 | 3.96e-58 | 182 |
| MS.gene56897.t1 | AT1G59940 | 54.500 | 200 | 71 | 5 | 16 | 197 | 23 | 220 | 7.39e-58 | 182 |
| MS.gene56897.t1 | AT1G19050 | 57.895 | 171 | 46 | 5 | 3 | 158 | 2 | 161 | 1.29e-56 | 178 |
| MS.gene56897.t1 | AT1G59940 | 54.500 | 200 | 71 | 5 | 16 | 197 | 115 | 312 | 1.72e-56 | 181 |
| MS.gene56897.t1 | AT1G10470 | 66.667 | 141 | 37 | 2 | 16 | 147 | 10 | 149 | 2.18e-56 | 179 |
| MS.gene56897.t1 | AT1G10470 | 66.667 | 141 | 37 | 2 | 16 | 147 | 24 | 163 | 3.43e-56 | 179 |
| MS.gene56897.t1 | AT2G40670 | 55.556 | 135 | 48 | 2 | 25 | 147 | 28 | 162 | 4.94e-46 | 150 |
| MS.gene56897.t1 | AT3G57040 | 54.305 | 151 | 49 | 4 | 21 | 152 | 4 | 153 | 2.09e-45 | 150 |
| MS.gene56897.t1 | AT3G57040 | 54.305 | 151 | 49 | 4 | 21 | 152 | 4 | 153 | 2.09e-45 | 150 |
| MS.gene56897.t1 | AT3G56380 | 55.639 | 133 | 49 | 2 | 25 | 147 | 19 | 151 | 2.53e-45 | 147 |
| MS.gene56897.t1 | AT2G41310 | 55.172 | 145 | 47 | 3 | 24 | 151 | 7 | 150 | 3.39e-45 | 149 |
| MS.gene56897.t1 | AT2G40670 | 54.815 | 135 | 48 | 3 | 25 | 147 | 28 | 161 | 2.95e-43 | 142 |
| MS.gene56897.t1 | AT3G56380 | 54.887 | 133 | 49 | 3 | 25 | 147 | 19 | 150 | 1.63e-42 | 140 |
| MS.gene56897.t1 | AT1G10470 | 62.667 | 75 | 27 | 1 | 85 | 158 | 25 | 99 | 5.83e-24 | 94.0 |
| MS.gene56897.t1 | AT2G07440 | 58.730 | 63 | 26 | 0 | 89 | 151 | 2 | 64 | 1.74e-17 | 75.9 |
| MS.gene56897.t1 | AT1G67710 | 30.719 | 153 | 78 | 7 | 19 | 159 | 7 | 143 | 3.20e-11 | 62.0 |
| MS.gene56897.t1 | AT5G24470 | 32.911 | 79 | 52 | 1 | 72 | 150 | 96 | 173 | 3.66e-11 | 62.0 |
Find 35 sgRNAs with CRISPR-Local
Find 111 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTCTCATGATAAAATCTTTC+AGG | 0.209124 | 8.1:+18089726 | None:intergenic |
| TTCACTAATTTGCAGGTGTT+TGG | 0.354372 | 8.1:-18089804 | MS.gene56897:intron |
| GTCGAATTTGACGGAGTTGT+TGG | 0.357934 | 8.1:-18091419 | MS.gene56897:CDS |
| TCATAATCTAGATTTCTTAG+AGG | 0.392419 | 8.1:+18089553 | None:intergenic |
| TTCTTAGAGGATAATGTTGA+TGG | 0.401052 | 8.1:+18089566 | None:intergenic |
| TTGTTGGAGGAATCACCTTC+AGG | 0.422121 | 8.1:-18091403 | MS.gene56897:CDS |
| ATGACGGATTATTCCATGCC+TGG | 0.447268 | 8.1:-18090990 | MS.gene56897:CDS |
| TATTCCATGCCTGGGATGAC+AGG | 0.450141 | 8.1:-18090981 | MS.gene56897:CDS |
| CTTACATCTGACAATTTGAC+TGG | 0.476820 | 8.1:+18089752 | None:intergenic |
| CAGTTTGCTATGGCTGCCGC+CGG | 0.493752 | 8.1:-18091454 | None:intergenic |
| GATGGAGAGAACAGTGATGT+TGG | 0.500241 | 8.1:-18091143 | MS.gene56897:CDS |
| GAGGAATCACCTTCAGGTGC+AGG | 0.503243 | 8.1:-18091397 | MS.gene56897:CDS |
| GAAGGTTAATTTGATAATGA+CGG | 0.519870 | 8.1:-18091006 | MS.gene56897:CDS |
| ACTAATTTGCAGGTGTTTGG+AGG | 0.520826 | 8.1:-18089801 | MS.gene56897:intron |
| ATTTGCAGGTGTTTGGAGGA+AGG | 0.521653 | 8.1:-18089797 | MS.gene56897:intron |
| AATTCATATCCTGTCATCCC+AGG | 0.536780 | 8.1:+18090972 | None:intergenic |
| TGAATTACTCAAGAAAATCA+AGG | 0.543151 | 8.1:-18090955 | MS.gene56897:intron |
| GAATTTGACGGAGTTGTTGG+AGG | 0.557040 | 8.1:-18091416 | MS.gene56897:CDS |
| TCCGACGACATGATCACCAC+TGG | 0.559021 | 8.1:+18090765 | None:intergenic |
| TGACGGATTATTCCATGCCT+GGG | 0.567665 | 8.1:-18090989 | MS.gene56897:CDS |
| GTGTTTGGAGGAAGGAGCAG+AGG | 0.569038 | 8.1:-18089789 | MS.gene56897:CDS |
| ATATCCTGTCATCCCAGGCA+TGG | 0.578908 | 8.1:+18090977 | None:intergenic |
| GTTATGGTGGCAGGGTGTGA+AGG | 0.590843 | 8.1:-18091024 | MS.gene56897:intron |
| TCCAGTGGTGATCATGTCGT+CGG | 0.595178 | 8.1:-18090766 | MS.gene56897:CDS |
| TGCAATTCACCTGCACCTGA+AGG | 0.595358 | 8.1:+18091388 | None:intergenic |
| ACAACTCCGTCAAATTCGAC+CGG | 0.607651 | 8.1:+18091422 | None:intergenic |
| GATAATGTTGATGGTGAGAG+TGG | 0.609390 | 8.1:+18089575 | None:intergenic |
| TATCATGAGAGGTGAAGTGA+AGG | 0.611120 | 8.1:-18089714 | MS.gene56897:CDS |
| ATGAGAGGTGAAGTGAAGGA+TGG | 0.617352 | 8.1:-18089710 | MS.gene56897:CDS |
| GGATCACATGAATGACGCAT+TGG | 0.617664 | 8.1:+18089617 | None:intergenic |
| ATTCGACCGGAAAATCTCGC+CGG | 0.617787 | 8.1:+18091435 | None:intergenic |
| GAGAATGTAGTTGATAGAGA+TGG | 0.621435 | 8.1:+18089641 | None:intergenic |
| CGACCGGAAAATCTCGCCGG+CGG | 0.669618 | 8.1:+18091438 | None:intergenic |
| GGTGAGAACACTGACGATGG+TGG | 0.724751 | 8.1:+18089596 | None:intergenic |
| AGTGGTGAGAACACTGACGA+TGG | 0.780723 | 8.1:+18089593 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATAAAAAGAAACTAATAAA+AGG | - | chr8.1:18090912-18090931 | MS.gene56897:intron | 10.0% |
| !!! | TTAGTTTCTTTTTATTTTTT+TGG | + | chr8.1:18090908-18090927 | None:intergenic | 10.0% |
| !! | AAACTAATAAAAGGAATATT+TGG | - | chr8.1:18090921-18090940 | MS.gene56897:intron | 15.0% |
| !! | ATATGTACATTTGTATTATA+TGG | - | chr8.1:18091031-18091050 | MS.gene56897:intron | 15.0% |
| !! | ATTACAATTACATTAATAGA+AGG | + | chr8.1:18090973-18090992 | None:intergenic | 15.0% |
| !! | TATGTACATTTGTATTATAT+GGG | - | chr8.1:18091032-18091051 | MS.gene56897:intron | 15.0% |
| !!! | ACAAATGTACATATTATTTT+GGG | + | chr8.1:18091025-18091044 | None:intergenic | 15.0% |
| !!! | ATTTTGAAATTTTATATTGG+AGG | - | chr8.1:18090140-18090159 | MS.gene56897:intron | 15.0% |
| !!! | TACAAATGTACATATTATTT+TGG | + | chr8.1:18091026-18091045 | None:intergenic | 15.0% |
| !! | AAATAAAACTATTAAGAAGC+AGG | + | chr8.1:18091175-18091194 | None:intergenic | 20.0% |
| !! | AAATCAAGGTGATTAATTAT+TGG | - | chr8.1:18090057-18090076 | MS.gene56897:intron | 20.0% |
| !! | AATCAATTTATTTCCTGTTT+AGG | + | chr8.1:18090479-18090498 | None:intergenic | 20.0% |
| !! | ACTATCAAACAATTCAAATA+AGG | + | chr8.1:18090097-18090116 | None:intergenic | 20.0% |
| !! | ATGTACATTTGTATTATATG+GGG | - | chr8.1:18091033-18091052 | MS.gene56897:intron | 20.0% |
| !!! | AATGTTTTTTGTTTCAGTTA+CGG | - | chr8.1:18089791-18089810 | MS.gene56897:CDS | 20.0% |
| !!! | ATGTTTTCATATGATTGATA+AGG | + | chr8.1:18090849-18090868 | None:intergenic | 20.0% |
| !!! | GTGATTTAAATTTTAAGCTT+TGG | - | chr8.1:18090319-18090338 | MS.gene56897:intron | 20.0% |
| !!! | TGTTTTGTTATGTTATGTTA+TGG | - | chr8.1:18089958-18089977 | MS.gene56897:intron | 20.0% |
| !!! | TTTAAATTTTAAGCTTTGGA+TGG | - | chr8.1:18090323-18090342 | MS.gene56897:intron | 20.0% |
| !!! | TTTTATTTTCACTAATTTGC+AGG | - | chr8.1:18091187-18091206 | MS.gene56897:CDS | 20.0% |
| ! | ACTACTAGCATAAATTTAAG+TGG | + | chr8.1:18090580-18090599 | None:intergenic | 25.0% |
| ! | ATGTAAGCAAATTATGTTTC+TGG | - | chr8.1:18089883-18089902 | MS.gene56897:intron | 25.0% |
| ! | CAATAAAATGTAAAACTGTG+CGG | + | chr8.1:18090998-18091017 | None:intergenic | 25.0% |
| ! | TCATAATCTAGATTTCTTAG+AGG | + | chr8.1:18091448-18091467 | None:intergenic | 25.0% |
| ! | TCTGGATTATTAACTTTGTT+TGG | - | chr8.1:18089901-18089920 | MS.gene56897:intron | 25.0% |
| ! | TGAATTACTCAAGAAAATCA+AGG | - | chr8.1:18090043-18090062 | MS.gene56897:intron | 25.0% |
| !! | ACTTTGTTTGGATGTTAATT+TGG | - | chr8.1:18089913-18089932 | MS.gene56897:intron | 25.0% |
| !! | ATATTTGGCAAGAATCTTTT+AGG | - | chr8.1:18090936-18090955 | MS.gene56897:intron | 25.0% |
| !! | TGAAATTTTATATTGGAGGA+AGG | - | chr8.1:18090144-18090163 | MS.gene56897:intron | 25.0% |
| !! | TTTGTTATGTTATGTTATGG+TGG | - | chr8.1:18089961-18089980 | MS.gene56897:intron | 25.0% |
| !!! | GAAGGTTAATTTGATAATGA+CGG | - | chr8.1:18089992-18090011 | MS.gene56897:intron | 25.0% |
| CAATTTATTTCCTGTTTAGG+TGG | + | chr8.1:18090476-18090495 | None:intergenic | 30.0% | |
| CAGGAAATAAATTGATTGTG+TGG | - | chr8.1:18090482-18090501 | MS.gene56897:intron | 30.0% | |
| CATTAACTTTCTATGCTGTT+AGG | - | chr8.1:18091132-18091151 | MS.gene56897:intron | 30.0% | |
| CTCTCATGATAAAATCTTTC+AGG | + | chr8.1:18091275-18091294 | None:intergenic | 30.0% | |
| CTGGAACTTGAATAAGTTTA+TGG | - | chr8.1:18090802-18090821 | MS.gene56897:intron | 30.0% | |
| TAGCATAAATTTAAGTGGCA+TGG | + | chr8.1:18090575-18090594 | None:intergenic | 30.0% | |
| TGTGAAATAACATGCGTATT+TGG | - | chr8.1:18090406-18090425 | MS.gene56897:intron | 30.0% | |
| TTATGCCTCCATATCTATTT+GGG | + | chr8.1:18090510-18090529 | None:intergenic | 30.0% | |
| TTCTTAGAGGATAATGTTGA+TGG | + | chr8.1:18091435-18091454 | None:intergenic | 30.0% | |
| TTGAAGATTTCTTCATGCAA+AGG | - | chr8.1:18089685-18089704 | MS.gene56897:CDS | 30.0% | |
| ! | AATTTTATATTGGAGGAAGG+TGG | - | chr8.1:18090147-18090166 | MS.gene56897:intron | 30.0% |
| ! | CTGAAAGATTTTATCATGAG+AGG | - | chr8.1:18091273-18091292 | MS.gene56897:intron | 30.0% |
| ! | GAATCAGTTTATTTGTTGAC+TGG | - | chr8.1:18090783-18090802 | MS.gene56897:CDS | 30.0% |
| ! | TGATTCGAGTTAAAAGAGTT+TGG | + | chr8.1:18090769-18090788 | None:intergenic | 30.0% |
| !! | AAATACGCATGTTATTTCAC+AGG | + | chr8.1:18090407-18090426 | None:intergenic | 30.0% |
| !! | TATGGTGTTATTTGTTTCCT+TGG | - | chr8.1:18090820-18090839 | MS.gene56897:intron | 30.0% |
| !!! | ATGTTTTGACTCGAATTGAT+AGG | - | chr8.1:18090258-18090277 | MS.gene56897:intron | 30.0% |
| AAACTATTAAGAAGCAGGAC+AGG | + | chr8.1:18091170-18091189 | None:intergenic | 35.0% | |
| AGGATCTGAAGGACTTAATT+TGG | + | chr8.1:18090731-18090750 | None:intergenic | 35.0% | |
| CTGCTGAAATTAACACAAAC+AGG | + | chr8.1:18090189-18090208 | None:intergenic | 35.0% | |
| CTGTTTGTGTTAATTTCAGC+AGG | - | chr8.1:18090187-18090206 | MS.gene56897:intron | 35.0% | |
| CTTACATCTGACAATTTGAC+TGG | + | chr8.1:18091249-18091268 | None:intergenic | 35.0% | |
| CTTATGCCTCCATATCTATT+TGG | + | chr8.1:18090511-18090530 | None:intergenic | 35.0% | |
| GGATGCATGTTTAACTAGAT+GGG | + | chr8.1:18090447-18090466 | None:intergenic | 35.0% | |
| TAACTTTCTATGCTGTTAGG+TGG | - | chr8.1:18091135-18091154 | MS.gene56897:intron | 35.0% | |
| TATGATTGATAAGGATGCCA+AGG | + | chr8.1:18090840-18090859 | None:intergenic | 35.0% | |
| TATGTTATGTTATGGTGGCA+GGG | - | chr8.1:18089966-18089985 | MS.gene56897:intron | 35.0% | |
| TCCGTTCTTAGTGTTAACAA+CGG | + | chr8.1:18090607-18090626 | None:intergenic | 35.0% | |
| TGGATGCATGTTTAACTAGA+TGG | + | chr8.1:18090448-18090467 | None:intergenic | 35.0% | |
| TTATGTTATGTTATGGTGGC+AGG | - | chr8.1:18089965-18089984 | MS.gene56897:intron | 35.0% | |
| ! | TGTATTATATGGGGTGCTTT+AGG | - | chr8.1:18091042-18091061 | MS.gene56897:intron | 35.0% |
| ! | TTCACTAATTTGCAGGTGTT+TGG | - | chr8.1:18091194-18091213 | MS.gene56897:intron | 35.0% |
| !! | GAGAATGTAGTTGATAGAGA+TGG | + | chr8.1:18091360-18091379 | None:intergenic | 35.0% |
| !! | GTTTTATTGAGAGGATCTGA+AGG | + | chr8.1:18090742-18090761 | None:intergenic | 35.0% |
| !! | TTTGGTCGTGTTTTATTGAG+AGG | + | chr8.1:18090751-18090770 | None:intergenic | 35.0% |
| !!! | TGTTTTTAGAGAGATTCCAG+TGG | - | chr8.1:18090217-18090236 | MS.gene56897:intron | 35.0% |
| AATTCATATCCTGTCATCCC+AGG | + | chr8.1:18090029-18090048 | None:intergenic | 40.0% | |
| GCCGTTGTTAACACTAAGAA+CGG | - | chr8.1:18090603-18090622 | MS.gene56897:intron | 40.0% | |
| GTGTGGATCCCAAATAGATA+TGG | - | chr8.1:18090499-18090518 | MS.gene56897:intron | 40.0% | |
| TATCATGAGAGGTGAAGTGA+AGG | - | chr8.1:18091284-18091303 | MS.gene56897:intron | 40.0% | |
| TGAAGTGATCTTAGAGATGC+AGG | - | chr8.1:18090627-18090646 | MS.gene56897:intron | 40.0% | |
| TGGATCCCAAATAGATATGG+AGG | - | chr8.1:18090502-18090521 | MS.gene56897:intron | 40.0% | |
| TGTCGAAAGTTGTTCTTGCT+AGG | + | chr8.1:18091112-18091131 | None:intergenic | 40.0% | |
| ! | AAGAAGAGCTCTCCAGTTTT+TGG | - | chr8.1:18089827-18089846 | MS.gene56897:intron | 40.0% |
| ! | ACTAATTTGCAGGTGTTTGG+AGG | - | chr8.1:18091197-18091216 | MS.gene56897:intron | 40.0% |
| ! | AGAAGAGCTCTCCAGTTTTT+GGG | - | chr8.1:18089828-18089847 | MS.gene56897:intron | 40.0% |
| ! | GATTTTCCGGTCGAATTTGA+CGG | - | chr8.1:18089570-18089589 | MS.gene56897:CDS | 40.0% |
| ! | TGTTGATTGTGTTTGTGCTC+TGG | - | chr8.1:18090350-18090369 | MS.gene56897:intron | 40.0% |
| !! | GATAATGTTGATGGTGAGAG+TGG | + | chr8.1:18091426-18091445 | None:intergenic | 40.0% |
| ACAACTCCGTCAAATTCGAC+CGG | + | chr8.1:18089579-18089598 | None:intergenic | 45.0% | |
| ATCCAATCTGCCACCTAAAC+AGG | - | chr8.1:18090463-18090482 | MS.gene56897:intron | 45.0% | |
| ATGAGAGGTGAAGTGAAGGA+TGG | - | chr8.1:18091288-18091307 | MS.gene56897:intron | 45.0% | |
| ATTTGCAGGTGTTTGGAGGA+AGG | - | chr8.1:18091201-18091220 | MS.gene56897:intron | 45.0% | |
| CATGGCAAACACAGATCACA+TGG | + | chr8.1:18090557-18090576 | None:intergenic | 45.0% | |
| CTCCATCCAATCCCAAAAAC+TGG | + | chr8.1:18089842-18089861 | None:intergenic | 45.0% | |
| GAATTTGACGGAGTTGTTGG+AGG | - | chr8.1:18089582-18089601 | MS.gene56897:CDS | 45.0% | |
| GATGGAGAGAACAGTGATGT+TGG | - | chr8.1:18089855-18089874 | MS.gene56897:intron | 45.0% | |
| GGATCACATGAATGACGCAT+TGG | + | chr8.1:18091384-18091403 | None:intergenic | 45.0% | |
| GTCGAATTTGACGGAGTTGT+TGG | - | chr8.1:18089579-18089598 | MS.gene56897:CDS | 45.0% | |
| TTCCTGTTTAGGTGGCAGAT+TGG | + | chr8.1:18090468-18090487 | None:intergenic | 45.0% | |
| TTGTTGGAGGAATCACCTTC+AGG | - | chr8.1:18089595-18089614 | MS.gene56897:CDS | 45.0% | |
| ! | TGGCAAGAATCTTTTAGGCG+TGG | - | chr8.1:18090941-18090960 | MS.gene56897:intron | 45.0% |
| !! | ATGACGGATTATTCCATGCC+TGG | - | chr8.1:18090008-18090027 | MS.gene56897:intron | 45.0% |
| !! | TGACGGATTATTCCATGCCT+GGG | - | chr8.1:18090009-18090028 | MS.gene56897:intron | 45.0% |
| !!! | AGCTCTCCAGTTTTTGGGAT+TGG | - | chr8.1:18089833-18089852 | MS.gene56897:intron | 45.0% |
| !!! | CTCCAGTTTTTGGGATTGGA+TGG | - | chr8.1:18089837-18089856 | MS.gene56897:intron | 45.0% |
| !!! | TTTATTTTGAAATTTTATAT+TGG | - | chr8.1:18090137-18090156 | MS.gene56897:intron | 5.0% |
| AGTGGTGAGAACACTGACGA+TGG | + | chr8.1:18091408-18091427 | None:intergenic | 50.0% | |
| ATATCCTGTCATCCCAGGCA+TGG | + | chr8.1:18090024-18090043 | None:intergenic | 50.0% | |
| ATTCGACCGGAAAATCTCGC+CGG | + | chr8.1:18089566-18089585 | None:intergenic | 50.0% | |
| TATTCCATGCCTGGGATGAC+AGG | - | chr8.1:18090017-18090036 | MS.gene56897:intron | 50.0% | |
| TCCAGTGGTGATCATGTCGT+CGG | - | chr8.1:18090232-18090251 | MS.gene56897:intron | 50.0% | |
| TGCAATTCACCTGCACCTGA+AGG | + | chr8.1:18089613-18089632 | None:intergenic | 50.0% | |
| GAGGAATCACCTTCAGGTGC+AGG | - | chr8.1:18089601-18089620 | MS.gene56897:CDS | 55.0% | |
| GGTGAGAACACTGACGATGG+TGG | + | chr8.1:18091405-18091424 | None:intergenic | 55.0% | |
| GTGTTTGGAGGAAGGAGCAG+AGG | - | chr8.1:18091209-18091228 | MS.gene56897:intron | 55.0% | |
| GTTATGGTGGCAGGGTGTGA+AGG | - | chr8.1:18089974-18089993 | MS.gene56897:intron | 55.0% | |
| TCCGACGACATGATCACCAC+TGG | + | chr8.1:18090236-18090255 | None:intergenic | 55.0% | |
| CGACCGGAAAATCTCGCCGG+CGG | + | chr8.1:18089563-18089582 | None:intergenic | 65.0% | |
| ! | CTGCCGCCGGCGAGATTTTC+CGG | - | chr8.1:18089557-18089576 | MS.gene56897:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.1 | gene | 18089553 | 18091467 | 18089553 | ID=MS.gene56897 |
| chr8.1 | mRNA | 18089553 | 18091467 | 18089553 | ID=MS.gene56897.t1;Parent=MS.gene56897 |
| chr8.1 | exon | 18091341 | 18091467 | 18091341 | ID=MS.gene56897.t1.exon1;Parent=MS.gene56897.t1 |
| chr8.1 | CDS | 18091341 | 18091467 | 18091341 | ID=cds.MS.gene56897.t1;Parent=MS.gene56897.t1 |
| chr8.1 | exon | 18091136 | 18091212 | 18091136 | ID=MS.gene56897.t1.exon2;Parent=MS.gene56897.t1 |
| chr8.1 | CDS | 18091136 | 18091212 | 18091136 | ID=cds.MS.gene56897.t1;Parent=MS.gene56897.t1 |
| chr8.1 | exon | 18090956 | 18091033 | 18090956 | ID=MS.gene56897.t1.exon3;Parent=MS.gene56897.t1 |
| chr8.1 | CDS | 18090956 | 18091033 | 18090956 | ID=cds.MS.gene56897.t1;Parent=MS.gene56897.t1 |
| chr8.1 | exon | 18090741 | 18090814 | 18090741 | ID=MS.gene56897.t1.exon4;Parent=MS.gene56897.t1 |
| chr8.1 | CDS | 18090741 | 18090814 | 18090741 | ID=cds.MS.gene56897.t1;Parent=MS.gene56897.t1 |
| chr8.1 | exon | 18089553 | 18089811 | 18089553 | ID=MS.gene56897.t1.exon5;Parent=MS.gene56897.t1 |
| chr8.1 | CDS | 18089553 | 18089811 | 18089553 | ID=cds.MS.gene56897.t1;Parent=MS.gene56897.t1 |
| Gene Sequence |
| Protein sequence |
