Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene56925.t1 | ABN09016.1 | 80 | 70 | 14 | 0 | 68 | 137 | 239 | 308 | 2.40E-25 | 125.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene56925.t1 | Q9MAA2 | 43.9 | 66 | 37 | 0 | 68 | 133 | 211 | 276 | 4.9e-11 | 68.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene56925.t1 | A2Q5Z6 | 80.0 | 70 | 14 | 0 | 68 | 137 | 239 | 308 | 1.7e-25 | 125.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene052447 | MS.gene56925 | 0.815956 | 7.09E-52 | -1.69E-46 |
| MS.gene056272 | MS.gene56925 | 0.808836 | 2.55E-50 | -1.69E-46 |
| MS.gene060134 | MS.gene56925 | 0.812618 | 3.87E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene56925.t1 | MTR_7g113920 | 80.000 | 70 | 14 | 0 | 68 | 137 | 239 | 308 | 2.29e-35 | 124 |
| MS.gene56925.t1 | MTR_1g082360 | 45.455 | 66 | 36 | 0 | 68 | 133 | 207 | 272 | 5.70e-17 | 75.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene56925.t1 | AT3G05170 | 43.939 | 66 | 37 | 0 | 68 | 133 | 211 | 276 | 9.53e-14 | 66.6 |
Find 40 sgRNAs with CRISPR-Local
Find 213 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCATTTCTTGATCTCATTAC+TGG | 0.266635 | 8.1:-18631727 | MS.gene56925:CDS |
| CAAGAAAAGTGGACTTATTA+AGG | 0.286810 | 8.1:-18632756 | MS.gene56925:intron |
| TTATTGTAGGTGATTGAAAT+TGG | 0.318361 | 8.1:-18632809 | MS.gene56925:intron |
| TTCTGATCAGCTACCATATC+AGG | 0.328803 | 8.1:+18631808 | None:intergenic |
| GAGCAAAGTTAAGTATGAAT+TGG | 0.377981 | 8.1:-18632780 | MS.gene56925:CDS |
| ACTGTTCGCGCTACTGTTCA+CGG | 0.397821 | 8.1:-18634916 | MS.gene56925:CDS |
| TCAAGGGAGCCTTGCTGCCA+TGG | 0.424486 | 8.1:+18631776 | None:intergenic |
| CTTCATGACTGTACCGTTCA+CGG | 0.435228 | 8.1:-18634992 | None:intergenic |
| CAGATGAAGAACTGCTTAAG+TGG | 0.460851 | 8.1:-18631840 | MS.gene56925:CDS |
| TGAGATCAAGAAATGCTTCA+AGG | 0.472093 | 8.1:+18631734 | None:intergenic |
| GTGGGGACTTTGAACATTCA+AGG | 0.472238 | 8.1:+18631759 | None:intergenic |
| GTTCACGGTTCTTCTACCTT+CGG | 0.480027 | 8.1:-18634901 | MS.gene56925:CDS |
| TGTGTGATGCAGTTTGGGAC+TGG | 0.480347 | 8.1:-18631892 | MS.gene56925:intron |
| TTCCTAATGTAGGGACCAGC+AGG | 0.485673 | 8.1:-18634155 | MS.gene56925:intron |
| CAAGAAATGCTTCAAGGCAG+TGG | 0.487042 | 8.1:+18631740 | None:intergenic |
| AAGAAATGCTTCAAGGCAGT+GGG | 0.528278 | 8.1:+18631741 | None:intergenic |
| TATGAATTGGACAAGAAAAG+TGG | 0.537750 | 8.1:-18632767 | MS.gene56925:CDS |
| ATATGGTAGCTGATCAGAAA+TGG | 0.538142 | 8.1:-18631804 | MS.gene56925:CDS |
| ACAGTAGCGCGAACAGTATG+AGG | 0.542302 | 8.1:+18634922 | None:intergenic |
| TAAACAACTTACAATAGATA+AGG | 0.543737 | 8.1:+18634682 | None:intergenic |
| CAAGGGAGCCTTGCTGCCAT+GGG | 0.546859 | 8.1:+18631777 | None:intergenic |
| AGAAGAAACGTGAACAGTAT+CGG | 0.556832 | 8.1:+18634946 | None:intergenic |
| TAGGTGATTGAAATTGGCAA+AGG | 0.557884 | 8.1:-18632803 | MS.gene56925:CDS |
| AGATGAAGAACTGCTTAAGT+GGG | 0.564810 | 8.1:-18631839 | MS.gene56925:CDS |
| AGGTGATTGAAATTGGCAAA+GGG | 0.576496 | 8.1:-18632802 | MS.gene56925:CDS |
| TGGGGACTTTGAACATTCAA+GGG | 0.579415 | 8.1:+18631760 | None:intergenic |
| GTGATGCAGTTTGGGACTGG+TGG | 0.592908 | 8.1:-18631889 | MS.gene56925:intron |
| ACAGATCTGTACTCCGCCGA+AGG | 0.611540 | 8.1:+18634885 | None:intergenic |
| CACGGTTCTTCTACCTTCGG+CGG | 0.611943 | 8.1:-18634898 | MS.gene56925:CDS |
| CAACTTACAATAGATAAGGT+AGG | 0.622194 | 8.1:+18634686 | None:intergenic |
| GATCAGAAATGGTGTGCCCA+TGG | 0.629856 | 8.1:-18631793 | MS.gene56925:CDS |
| TTGATTCTGAAATCCGTGAA+CGG | 0.638254 | 8.1:+18634979 | None:intergenic |
| CTTACAATAGATAAGGTAGG+AGG | 0.643117 | 8.1:+18634689 | None:intergenic |
| ATGGTGTGCCCATGGCAGCA+AGG | 0.643428 | 8.1:-18631785 | MS.gene56925:CDS |
| TGGTTCTGATGACGAGAGTG+TGG | 0.652927 | 8.1:-18631707 | MS.gene56925:CDS |
| GATGAAGAACTGCTTAAGTG+GGG | 0.656412 | 8.1:-18631838 | MS.gene56925:CDS |
| ATGAAGAACTGCTTAAGTGG+GGG | 0.668914 | 8.1:-18631837 | MS.gene56925:CDS |
| AGAAACGTGAACAGTATCGG+AGG | 0.692909 | 8.1:+18634949 | None:intergenic |
| AGAAATGCTTCAAGGCAGTG+GGG | 0.713932 | 8.1:+18631742 | None:intergenic |
| GACTGGTGGAGAGTACAACG+TGG | 0.821720 | 8.1:-18631875 | MS.gene56925:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTTAATAGAATTTGATAA+TGG | + | chr8.1:18634483-18634502 | None:intergenic | 10.0% |
| !! | TATTATTGAATAATAATGTT+TGG | + | chr8.1:18634334-18634353 | None:intergenic | 10.0% |
| !!! | TTTTAATAATTAAAAGAGAA+AGG | + | chr8.1:18632571-18632590 | None:intergenic | 10.0% |
| !! | ATAATAAACAGGATAATAAA+CGG | + | chr8.1:18634366-18634385 | None:intergenic | 15.0% |
| !! | TCAAGTAACATTATTTATTT+AGG | + | chr8.1:18632121-18632140 | None:intergenic | 15.0% |
| !! | TTAAAAACTTAGGATTTATA+TGG | - | chr8.1:18634257-18634276 | MS.gene56925:intron | 15.0% |
| !!! | ACAATTATTTTCATAAATAC+AGG | - | chr8.1:18633625-18633644 | MS.gene56925:intron | 15.0% |
| !!! | GTTATATTTTGATTTTGATT+TGG | - | chr8.1:18631875-18631894 | MS.gene56925:CDS | 15.0% |
| !!! | TCAAATTTGAATCTAATTTT+GGG | - | chr8.1:18631845-18631864 | MS.gene56925:CDS | 15.0% |
| !!! | TGGTTAATTTTATTAATTCT+GGG | - | chr8.1:18632063-18632082 | MS.gene56925:intron | 15.0% |
| !! | AACGATTGAAAAGTTATAAT+TGG | + | chr8.1:18633974-18633993 | None:intergenic | 20.0% |
| !! | ACGATTGAAAAGTTATAATT+GGG | + | chr8.1:18633973-18633992 | None:intergenic | 20.0% |
| !! | AGGCTAATATTTGTATATAT+TGG | - | chr8.1:18632336-18632355 | MS.gene56925:intron | 20.0% |
| !! | ATATAAAGGTCATTTCTTAT+TGG | - | chr8.1:18634122-18634141 | MS.gene56925:intron | 20.0% |
| !! | ATATATCATTTCCTAATGTA+GGG | - | chr8.1:18632523-18632542 | MS.gene56925:intron | 20.0% |
| !! | CAGAATTAATAAAATTAACC+AGG | + | chr8.1:18632064-18632083 | None:intergenic | 20.0% |
| !! | TAAACAACTTACAATAGATA+AGG | + | chr8.1:18632008-18632027 | None:intergenic | 20.0% |
| !! | TAATAAACAGGATAATAAAC+GGG | + | chr8.1:18634365-18634384 | None:intergenic | 20.0% |
| !! | TATATATCATTTCCTAATGT+AGG | - | chr8.1:18632522-18632541 | MS.gene56925:intron | 20.0% |
| !! | TATTGAATAATAATGTTTGG+TGG | + | chr8.1:18634331-18634350 | None:intergenic | 20.0% |
| !! | TTAGGCCTAATTAATAAAAT+TGG | - | chr8.1:18632384-18632403 | MS.gene56925:intron | 20.0% |
| !! | TTTCTTCTTGTTAAAAACTT+AGG | - | chr8.1:18634247-18634266 | MS.gene56925:intron | 20.0% |
| !!! | AAATGAATCAACCATATTTT+CGG | + | chr8.1:18634011-18634030 | None:intergenic | 20.0% |
| !!! | AGAAATTCTATGATTTTGTT+TGG | + | chr8.1:18634411-18634430 | None:intergenic | 20.0% |
| !!! | ATAAAGGTCGTTTATTTTAA+GGG | - | chr8.1:18634042-18634061 | MS.gene56925:intron | 20.0% |
| !!! | CTGGTTAATTTTATTAATTC+TGG | - | chr8.1:18632062-18632081 | MS.gene56925:intron | 20.0% |
| !!! | GTCAAATTTGAATCTAATTT+TGG | - | chr8.1:18631844-18631863 | MS.gene56925:CDS | 20.0% |
| !!! | TATAAAGGTCGTTTATTTTA+AGG | - | chr8.1:18634041-18634060 | MS.gene56925:intron | 20.0% |
| !!! | TATTTGATTTACTAATTACC+TGG | - | chr8.1:18632043-18632062 | MS.gene56925:intron | 20.0% |
| !!! | TCGTTCCAATTTTATTAATT+AGG | + | chr8.1:18632392-18632411 | None:intergenic | 20.0% |
| !!! | TCTTTTTTTTTTTTCGTTGT+CGG | - | chr8.1:18633683-18633702 | MS.gene56925:intron | 20.0% |
| !!! | TTAAGATTTTCTATTGTAGT+TGG | - | chr8.1:18632198-18632217 | MS.gene56925:intron | 20.0% |
| !!! | TTTTCTTAAATCTATATGGA+TGG | - | chr8.1:18634617-18634636 | MS.gene56925:intron | 20.0% |
| ! | AAAGGGAATTATGTTATTGT+AGG | - | chr8.1:18633865-18633884 | MS.gene56925:intron | 25.0% |
| ! | ACAATGAGAAATTAACAACA+AGG | + | chr8.1:18633559-18633578 | None:intergenic | 25.0% |
| ! | ACCAAGTAAGAATAATAAAC+AGG | + | chr8.1:18634377-18634396 | None:intergenic | 25.0% |
| ! | ATATTTAGTGTGTAGTAGTT+GGG | - | chr8.1:18633169-18633188 | MS.gene56925:intron | 25.0% |
| ! | ATTTATTTAGGCCATGAATA+TGG | + | chr8.1:18632109-18632128 | None:intergenic | 25.0% |
| ! | CATTTGATGGGAAAATATAA+AGG | - | chr8.1:18634026-18634045 | MS.gene56925:intron | 25.0% |
| ! | GACAAGAAACAAACTTTATT+GGG | + | chr8.1:18632275-18632294 | None:intergenic | 25.0% |
| ! | TAGGATTTATATGGTATTTG+AGG | - | chr8.1:18634266-18634285 | MS.gene56925:intron | 25.0% |
| ! | TATATTAACCTACACATTGT+AGG | - | chr8.1:18634156-18634175 | MS.gene56925:intron | 25.0% |
| ! | TCCTGTTTATTATTCTTACT+TGG | - | chr8.1:18634373-18634392 | MS.gene56925:intron | 25.0% |
| ! | TGACAAGAAACAAACTTTAT+TGG | + | chr8.1:18632276-18632295 | None:intergenic | 25.0% |
| ! | TTAAACTAATGTAATGCAGA+GGG | - | chr8.1:18634556-18634575 | MS.gene56925:intron | 25.0% |
| ! | TTATTAATTAGGCCTAATCA+AGG | + | chr8.1:18632381-18632400 | None:intergenic | 25.0% |
| ! | TTATTAGGCTATATACATGT+TGG | + | chr8.1:18633444-18633463 | None:intergenic | 25.0% |
| ! | TTATTGTAGGTGATTGAAAT+TGG | - | chr8.1:18633878-18633897 | MS.gene56925:intron | 25.0% |
| ! | TTTCTTTCACAAAGATATGT+GGG | - | chr8.1:18632237-18632256 | MS.gene56925:intron | 25.0% |
| !! | AATATGGTTGATTCATTTGA+TGG | - | chr8.1:18634013-18634032 | MS.gene56925:intron | 25.0% |
| !! | ATATGGTTGATTCATTTGAT+GGG | - | chr8.1:18634014-18634033 | MS.gene56925:intron | 25.0% |
| !! | CAGGTTTTCTTAAATCTATA+TGG | - | chr8.1:18634613-18634632 | MS.gene56925:intron | 25.0% |
| !! | GAAGACTTTTAAATTTCTCA+TGG | - | chr8.1:18632139-18632158 | MS.gene56925:intron | 25.0% |
| !! | TAAAGTTTGTTTCTTGTCAA+TGG | - | chr8.1:18632277-18632296 | MS.gene56925:intron | 25.0% |
| !! | TAACATCTTTGTGCTATTAA+TGG | - | chr8.1:18633839-18633858 | MS.gene56925:intron | 25.0% |
| !! | TTTGAACTTCTCAACAATTT+TGG | - | chr8.1:18634759-18634778 | MS.gene56925:intron | 25.0% |
| !!! | CTTTTTTTTTTTTCGTTGTC+GGG | - | chr8.1:18633684-18633703 | MS.gene56925:intron | 25.0% |
| !!! | TAGAATTTGATAATGGTTGT+TGG | + | chr8.1:18634476-18634495 | None:intergenic | 25.0% |
| !!! | TTTTTTTTTTTTCGTTGTCG+GGG | - | chr8.1:18633685-18633704 | MS.gene56925:intron | 25.0% |
| AAACGAAGCCTTAATAAATG+TGG | - | chr8.1:18633797-18633816 | MS.gene56925:intron | 30.0% | |
| AATCTGATAATTGTGTCACA+TGG | - | chr8.1:18634684-18634703 | MS.gene56925:intron | 30.0% | |
| ACAGAGACATTTGATATGTT+GGG | - | chr8.1:18632763-18632782 | MS.gene56925:CDS | 30.0% | |
| AGATATGTGGGACAATTATA+TGG | - | chr8.1:18632249-18632268 | MS.gene56925:intron | 30.0% | |
| AGGAGTGATATATATGTTAG+CGG | - | chr8.1:18632634-18632653 | MS.gene56925:intron | 30.0% | |
| ATATTTAGTGTGTAGTAGCT+GGG | - | chr8.1:18632808-18632827 | MS.gene56925:intron | 30.0% | |
| ATCAGATTCAAATCGTTTGA+AGG | + | chr8.1:18634672-18634691 | None:intergenic | 30.0% | |
| ATTCTGCCAAATTAATTGTG+AGG | - | chr8.1:18634093-18634112 | MS.gene56925:intron | 30.0% | |
| ATTGAATACCTACAATGTGT+AGG | + | chr8.1:18634167-18634186 | None:intergenic | 30.0% | |
| ATTTGAGGACACTTTCATTT+AGG | - | chr8.1:18634281-18634300 | MS.gene56925:intron | 30.0% | |
| ATTTGGCAGAATTGTAGAAA+TGG | + | chr8.1:18634085-18634104 | None:intergenic | 30.0% | |
| CAAAGTTAGATGCATTAACT+TGG | - | chr8.1:18632682-18632701 | MS.gene56925:intron | 30.0% | |
| CAACTTACAATAGATAAGGT+AGG | + | chr8.1:18632004-18632023 | None:intergenic | 30.0% | |
| CAAGTTAACATATGTAGGAT+AGG | + | chr8.1:18633045-18633064 | None:intergenic | 30.0% | |
| CAAGTTAATGCATCTAACTT+TGG | + | chr8.1:18632684-18632703 | None:intergenic | 30.0% | |
| CAATCTTTGATCACGTTATT+AGG | + | chr8.1:18633459-18633478 | None:intergenic | 30.0% | |
| CATATTTAGTGTGTAGTAGT+TGG | - | chr8.1:18633168-18633187 | MS.gene56925:intron | 30.0% | |
| CATTATTCCAAAACTCAGAA+GGG | + | chr8.1:18633738-18633757 | None:intergenic | 30.0% | |
| CCTCTAACATAGAATGAAAA+TGG | + | chr8.1:18632617-18632636 | None:intergenic | 30.0% | |
| CTAACCAAGTTAACATATGT+AGG | + | chr8.1:18633050-18633069 | None:intergenic | 30.0% | |
| CTATCCTACATATGTTAACT+TGG | - | chr8.1:18633043-18633062 | MS.gene56925:intron | 30.0% | |
| CTTAAACTAATGTAATGCAG+AGG | - | chr8.1:18634555-18634574 | MS.gene56925:intron | 30.0% | |
| CTTTCTTTCACAAAGATATG+TGG | - | chr8.1:18632236-18632255 | MS.gene56925:intron | 30.0% | |
| GAGAAATTAACAACAAGGAT+AGG | + | chr8.1:18633554-18633573 | None:intergenic | 30.0% | |
| GAGCAAAGTTAAGTATGAAT+TGG | - | chr8.1:18633907-18633926 | MS.gene56925:intron | 30.0% | |
| GTAACATTAACACCTTGATT+AGG | - | chr8.1:18632366-18632385 | MS.gene56925:intron | 30.0% | |
| GTTTCTTGTCAATGGAAATT+GGG | - | chr8.1:18632285-18632304 | MS.gene56925:intron | 30.0% | |
| TATGAATTGGACAAGAAAAG+TGG | - | chr8.1:18633920-18633939 | MS.gene56925:intron | 30.0% | |
| TCAGATTCAAATCGTTTGAA+GGG | + | chr8.1:18634671-18634690 | None:intergenic | 30.0% | |
| TGAGATCACCACATTTATTA+AGG | + | chr8.1:18633808-18633827 | None:intergenic | 30.0% | |
| TGTTTCTTGTCAATGGAAAT+TGG | - | chr8.1:18632284-18632303 | MS.gene56925:intron | 30.0% | |
| TTATCCTGCATATGTTAACT+AGG | - | chr8.1:18633395-18633414 | MS.gene56925:intron | 30.0% | |
| TTATTAAGGCTTCGTTTAGT+TGG | + | chr8.1:18633794-18633813 | None:intergenic | 30.0% | |
| TTCATCTGATTCCGAAAATA+TGG | - | chr8.1:18633997-18634016 | MS.gene56925:intron | 30.0% | |
| TTGTGAGGAGGAAAATATAA+AGG | - | chr8.1:18634108-18634127 | MS.gene56925:intron | 30.0% | |
| TTTCCTCCTCACAATTAATT+TGG | + | chr8.1:18634102-18634121 | None:intergenic | 30.0% | |
| TTTCTCTGTTTGAACTTTGA+AGG | - | chr8.1:18632316-18632335 | MS.gene56925:intron | 30.0% | |
| ! | ATATGATTTGCGAAACCAAT+TGG | - | chr8.1:18634216-18634235 | MS.gene56925:intron | 30.0% |
| ! | ATTTTCATAAATACAGGACC+AGG | - | chr8.1:18633631-18633650 | MS.gene56925:intron | 30.0% |
| ! | CAAGAAAAGTGGACTTATTA+AGG | - | chr8.1:18633931-18633950 | MS.gene56925:intron | 30.0% |
| ! | CCATTTTCATTCTATGTTAG+AGG | - | chr8.1:18632614-18632633 | MS.gene56925:intron | 30.0% |
| ! | CTACATATGTTAACTTGGTT+AGG | - | chr8.1:18633048-18633067 | MS.gene56925:intron | 30.0% |
| ! | TGTGCTATTAATGGTGTAAA+GGG | - | chr8.1:18633848-18633867 | MS.gene56925:intron | 30.0% |
| ! | TTAGATGCATTAACTTGGTT+AGG | - | chr8.1:18632687-18632706 | MS.gene56925:intron | 30.0% |
| ! | TTGTGCTATTAATGGTGTAA+AGG | - | chr8.1:18633847-18633866 | MS.gene56925:intron | 30.0% |
| !! | GAATCTAATTTTGGGAAAGT+AGG | - | chr8.1:18631853-18631872 | MS.gene56925:CDS | 30.0% |
| !! | TTGATAATGGTTGTTGGATA+AGG | + | chr8.1:18634470-18634489 | None:intergenic | 30.0% |
| !!! | ACAGTAGTTTTTTGTGCTTT+TGG | - | chr8.1:18632937-18632956 | MS.gene56925:intron | 30.0% |
| !!! | ATTGTAGTTGGTTTTCGAAA+GGG | - | chr8.1:18632210-18632229 | MS.gene56925:intron | 30.0% |
| !!! | TATTGTAGTTGGTTTTCGAA+AGG | - | chr8.1:18632209-18632228 | MS.gene56925:intron | 30.0% |
| AAATTTCTCATGGTAGACAG+TGG | - | chr8.1:18632149-18632168 | MS.gene56925:intron | 35.0% | |
| AGAAGAAACGTGAACAGTAT+CGG | + | chr8.1:18631744-18631763 | None:intergenic | 35.0% | |
| AGATGAAGAACTGCTTAAGT+GGG | - | chr8.1:18634848-18634867 | MS.gene56925:intron | 35.0% | |
| AGGTGATTGAAATTGGCAAA+GGG | - | chr8.1:18633885-18633904 | MS.gene56925:intron | 35.0% | |
| AGTTATGTGTGATGCAGTTT+GGG | - | chr8.1:18634790-18634809 | MS.gene56925:intron | 35.0% | |
| ATAGCCTAGTTAACATATGC+AGG | + | chr8.1:18633402-18633421 | None:intergenic | 35.0% | |
| ATATGGTAGCTGATCAGAAA+TGG | - | chr8.1:18634883-18634902 | MS.gene56925:intron | 35.0% | |
| CAACATATCAAATGTCTCTG+TGG | + | chr8.1:18632764-18632783 | None:intergenic | 35.0% | |
| CACAGAGACATTTGATATGT+TGG | - | chr8.1:18632762-18632781 | MS.gene56925:CDS | 35.0% | |
| CATATTTAGTGTGTAGTAGC+TGG | - | chr8.1:18632807-18632826 | MS.gene56925:intron | 35.0% | |
| CCATTATTCCAAAACTCAGA+AGG | + | chr8.1:18633739-18633758 | None:intergenic | 35.0% | |
| CTTACAATAGATAAGGTAGG+AGG | + | chr8.1:18632001-18632020 | None:intergenic | 35.0% | |
| GAAGAAAACAAGTTGCCAAT+TGG | + | chr8.1:18634234-18634253 | None:intergenic | 35.0% | |
| GCATTTCTTGATCTCATTAC+TGG | - | chr8.1:18634960-18634979 | MS.gene56925:CDS | 35.0% | |
| GTAGGTATTCAATGATCCAA+TGG | - | chr8.1:18634174-18634193 | MS.gene56925:intron | 35.0% | |
| TAGGTGATTGAAATTGGCAA+AGG | - | chr8.1:18633884-18633903 | MS.gene56925:intron | 35.0% | |
| TGAGATCAAGAAATGCTTCA+AGG | + | chr8.1:18634956-18634975 | None:intergenic | 35.0% | |
| TGGATAAGGTGATCATTGTT+TGG | + | chr8.1:18634456-18634475 | None:intergenic | 35.0% | |
| TGTTCGCATACACATACAAA+AGG | + | chr8.1:18632991-18633010 | None:intergenic | 35.0% | |
| TGTTCGCATACACATACAAA+GGG | + | chr8.1:18632991-18633010 | None:intergenic | 35.0% | |
| TTAACATATGTAGGATAGGC+AGG | + | chr8.1:18633041-18633060 | None:intergenic | 35.0% | |
| TTGTTCGCATACACATACAA+AGG | + | chr8.1:18632992-18633011 | None:intergenic | 35.0% | |
| ! | TCATTTTCTGCTAATGCCAT+TGG | + | chr8.1:18634193-18634212 | None:intergenic | 35.0% |
| !! | ATTTCTGAGAAGTATCTGGA+TGG | - | chr8.1:18633495-18633514 | MS.gene56925:intron | 35.0% |
| !! | TCTCATTTCTGAGAAGTATC+TGG | - | chr8.1:18633491-18633510 | MS.gene56925:intron | 35.0% |
| !! | TGTTTGGTGTTGTATGTTAG+TGG | - | chr8.1:18632910-18632929 | MS.gene56925:intron | 35.0% |
| !! | TTGATTCTGAAATCCGTGAA+CGG | + | chr8.1:18631711-18631730 | None:intergenic | 35.0% |
| !! | TTTGGAGATGATTTGTTTGC+AGG | - | chr8.1:18634594-18634613 | MS.gene56925:intron | 35.0% |
| !! | TTTTGACTGCATTCCTTTAC+AGG | - | chr8.1:18634501-18634520 | MS.gene56925:intron | 35.0% |
| !!! | AGTTTTTTGTGCTTTTGGTG+TGG | - | chr8.1:18632942-18632961 | MS.gene56925:intron | 35.0% |
| !!! | CCTTCTGAGTTTTGGAATAA+TGG | - | chr8.1:18633736-18633755 | MS.gene56925:intron | 35.0% |
| !!! | GCATATCAGCTGGATTTTTT+TGG | - | chr8.1:18632874-18632893 | MS.gene56925:intron | 35.0% |
| AAGAAATGCTTCAAGGCAGT+GGG | + | chr8.1:18634949-18634968 | None:intergenic | 40.0% | |
| ATGAAGAACTGCTTAAGTGG+GGG | - | chr8.1:18634850-18634869 | MS.gene56925:intron | 40.0% | |
| CACGACAAATCAACCTGTAA+AGG | + | chr8.1:18634517-18634536 | None:intergenic | 40.0% | |
| CAGATGAAGAACTGCTTAAG+TGG | - | chr8.1:18634847-18634866 | MS.gene56925:intron | 40.0% | |
| CATCACAACCAAGTCTCAAT+GGG | + | chr8.1:18632438-18632457 | None:intergenic | 40.0% | |
| CTGCCAAATTAATTGTGAGG+AGG | - | chr8.1:18634096-18634115 | MS.gene56925:intron | 40.0% | |
| GAGTTATGTGTGATGCAGTT+TGG | - | chr8.1:18634789-18634808 | MS.gene56925:intron | 40.0% | |
| GATAATTGTGTCACATGGAC+TGG | - | chr8.1:18634689-18634708 | MS.gene56925:intron | 40.0% | |
| GATGAAGAACTGCTTAAGTG+GGG | - | chr8.1:18634849-18634868 | MS.gene56925:intron | 40.0% | |
| GGGATCAGCTGGTATTAATT+TGG | - | chr8.1:18634576-18634595 | MS.gene56925:intron | 40.0% | |
| GGTCAAAAATCATTACCTGC+TGG | + | chr8.1:18632550-18632569 | None:intergenic | 40.0% | |
| GTCAATGGAAATTGGGAACA+GGG | - | chr8.1:18632292-18632311 | MS.gene56925:intron | 40.0% | |
| TAGTGTGTAGTAGTTGGGTT+GGG | - | chr8.1:18633174-18633193 | MS.gene56925:intron | 40.0% | |
| TATATGTTAGCGGAGACATG+TGG | - | chr8.1:18632644-18632663 | MS.gene56925:intron | 40.0% | |
| TCCATCTAAACCACCTCATT+GGG | + | chr8.1:18634728-18634747 | None:intergenic | 40.0% | |
| TGGGGACTTTGAACATTCAA+GGG | + | chr8.1:18634930-18634949 | None:intergenic | 40.0% | |
| TGTCAATGGAAATTGGGAAC+AGG | - | chr8.1:18632291-18632310 | MS.gene56925:intron | 40.0% | |
| TTACAGATCCCATTGAGACT+TGG | - | chr8.1:18632427-18632446 | MS.gene56925:intron | 40.0% | |
| TTAGTGTGTAGTAGTTGGGT+TGG | - | chr8.1:18633173-18633192 | MS.gene56925:intron | 40.0% | |
| TTCTGATCAGCTACCATATC+AGG | + | chr8.1:18634882-18634901 | None:intergenic | 40.0% | |
| TTGAAAACAGATGAAGCTCC+TGG | + | chr8.1:18633652-18633671 | None:intergenic | 40.0% | |
| !! | TGTTTGGTGCTGTATGTTAG+TGG | - | chr8.1:18633271-18633290 | MS.gene56925:intron | 40.0% |
| !! | TTGGGCTGTTTCTTACTATG+TGG | - | chr8.1:18632831-18632850 | MS.gene56925:intron | 40.0% |
| !!! | GCATATCAGCTGGGTTTTTT+TGG | - | chr8.1:18633235-18633254 | MS.gene56925:intron | 40.0% |
| AGAAATGCTTCAAGGCAGTG+GGG | + | chr8.1:18634948-18634967 | None:intergenic | 45.0% | |
| CAAGAAATGCTTCAAGGCAG+TGG | + | chr8.1:18634950-18634969 | None:intergenic | 45.0% | |
| CCATCACAACCAAGTCTCAA+TGG | + | chr8.1:18632439-18632458 | None:intergenic | 45.0% | |
| GTCCATCTAAACCACCTCAT+TGG | + | chr8.1:18634729-18634748 | None:intergenic | 45.0% | |
| GTGGGGACTTTGAACATTCA+AGG | + | chr8.1:18634931-18634950 | None:intergenic | 45.0% | |
| GTTCACGGTTCTTCTACCTT+CGG | - | chr8.1:18631786-18631805 | MS.gene56925:CDS | 45.0% | |
| TAGTGTGTAGTAGCTGGGTT+GGG | - | chr8.1:18632813-18632832 | MS.gene56925:intron | 45.0% | |
| TCCCAATGAGGTGGTTTAGA+TGG | - | chr8.1:18634724-18634743 | MS.gene56925:intron | 45.0% | |
| TCGTTGTCGGGGAAGAAAAT+TGG | - | chr8.1:18633696-18633715 | MS.gene56925:intron | 45.0% | |
| TTAGTGTGTAGTAGCTGGGT+TGG | - | chr8.1:18632812-18632831 | MS.gene56925:intron | 45.0% | |
| TTGCTGGTAGCATATCAGCT+GGG | - | chr8.1:18633226-18633245 | MS.gene56925:intron | 45.0% | |
| TTTGCTGGTAGCATATCAGC+TGG | - | chr8.1:18633225-18633244 | MS.gene56925:intron | 45.0% | |
| ! | AGAAACGTGAACAGTATCGG+AGG | + | chr8.1:18631741-18631760 | None:intergenic | 45.0% |
| ! | AGCATGACCCTTCTGAGTTT+TGG | - | chr8.1:18633728-18633747 | MS.gene56925:intron | 45.0% |
| ! | CATCTCGAGTTTTCCCAATG+AGG | - | chr8.1:18634712-18634731 | MS.gene56925:intron | 45.0% |
| ! | CCATTGAGACTTGGTTGTGA+TGG | - | chr8.1:18632436-18632455 | MS.gene56925:intron | 45.0% |
| ! | TGAGACTTGGTTGTGATGGT+GGG | - | chr8.1:18632440-18632459 | MS.gene56925:intron | 45.0% |
| ! | TTGAGACTTGGTTGTGATGG+TGG | - | chr8.1:18632439-18632458 | MS.gene56925:intron | 45.0% |
| !! | CTTTTGGTGTGGTTCTGTGA+GGG | - | chr8.1:18632953-18632972 | MS.gene56925:intron | 45.0% |
| !! | TTTTGGTGTGGTTCTGTGAG+GGG | - | chr8.1:18632954-18632973 | MS.gene56925:intron | 45.0% |
| !!! | CAGCTGGATTTTTTTGGTGC+TGG | - | chr8.1:18632880-18632899 | MS.gene56925:intron | 45.0% |
| !! | AATGATATATAAAATTAAAA+TGG | + | chr8.1:18632513-18632532 | None:intergenic | 5.0% |
| ACAGTAGCGCGAACAGTATG+AGG | + | chr8.1:18631768-18631787 | None:intergenic | 50.0% | |
| ACTGTTCGCGCTACTGTTCA+CGG | - | chr8.1:18631771-18631790 | MS.gene56925:CDS | 50.0% | |
| GATCAGAAATGGTGTGCCCA+TGG | - | chr8.1:18634894-18634913 | MS.gene56925:intron | 50.0% | |
| GTGAGTGTGCGCCATATTCA+TGG | - | chr8.1:18632095-18632114 | MS.gene56925:intron | 50.0% | |
| TACCTGCTGGTCCCTACATT+AGG | + | chr8.1:18632537-18632556 | None:intergenic | 50.0% | |
| TGTAATGCAGAGGGATCAGC+TGG | - | chr8.1:18634565-18634584 | MS.gene56925:intron | 50.0% | |
| TTCCTAATGTAGGGACCAGC+AGG | - | chr8.1:18632532-18632551 | MS.gene56925:intron | 50.0% | |
| TTTGCTGGCAGCATATCAGC+TGG | - | chr8.1:18632864-18632883 | MS.gene56925:intron | 50.0% | |
| ! | CTCGAGTTTTCCCAATGAGG+TGG | - | chr8.1:18634715-18634734 | MS.gene56925:intron | 50.0% |
| ! | TGTGTGATGCAGTTTGGGAC+TGG | - | chr8.1:18634795-18634814 | MS.gene56925:intron | 50.0% |
| !! | GCTTTTGGTGTGGTTCTGTG+AGG | - | chr8.1:18632952-18632971 | MS.gene56925:intron | 50.0% |
| !! | TGGTTCTGATGACGAGAGTG+TGG | - | chr8.1:18634980-18634999 | MS.gene56925:CDS | 50.0% |
| !! | TTGGGCTGTTTCTTGCTCTG+TGG | - | chr8.1:18633192-18633211 | MS.gene56925:intron | 50.0% |
| !!! | CAGCTGGGTTTTTTTGGTGC+TGG | - | chr8.1:18633241-18633260 | MS.gene56925:intron | 50.0% |
| ACAGATCTGTACTCCGCCGA+AGG | + | chr8.1:18631805-18631824 | None:intergenic | 55.0% | |
| CACGGTTCTTCTACCTTCGG+CGG | - | chr8.1:18631789-18631808 | MS.gene56925:CDS | 55.0% | |
| ! | GACTGGTGGAGAGTACAACG+TGG | - | chr8.1:18634812-18634831 | MS.gene56925:intron | 55.0% |
| ! | GTGATGCAGTTTGGGACTGG+TGG | - | chr8.1:18634798-18634817 | MS.gene56925:intron | 55.0% |
| ! | TGTGGCAGTCTGCTGTTTGC+TGG | - | chr8.1:18632849-18632868 | MS.gene56925:intron | 55.0% |
| !! | GACTTGGTTGTGATGGTGGG+TGG | - | chr8.1:18632443-18632462 | MS.gene56925:intron | 55.0% |
| !! | TGGTGCTGGCAGAAGCTGTT+TGG | - | chr8.1:18632894-18632913 | MS.gene56925:intron | 55.0% |
| ATGGTGTGCCCATGGCAGCA+AGG | - | chr8.1:18634902-18634921 | MS.gene56925:CDS | 60.0% | |
| CAAGGGAGCCTTGCTGCCAT+GGG | + | chr8.1:18634913-18634932 | None:intergenic | 60.0% | |
| GTGGGGGCTCTCTCCTGATA+TGG | - | chr8.1:18634866-18634885 | MS.gene56925:intron | 60.0% | |
| TCAAGGGAGCCTTGCTGCCA+TGG | + | chr8.1:18634914-18634933 | None:intergenic | 60.0% | |
| !! | TGGTGCTGGCAGCAGCTGTT+TGG | - | chr8.1:18633255-18633274 | MS.gene56925:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.1 | gene | 18631699 | 18635010 | 18631699 | ID=MS.gene56925 |
| chr8.1 | mRNA | 18631699 | 18635010 | 18631699 | ID=MS.gene56925.t1;Parent=MS.gene56925 |
| chr8.1 | exon | 18634897 | 18635010 | 18634897 | ID=MS.gene56925.t1.exon1;Parent=MS.gene56925.t1 |
| chr8.1 | CDS | 18634897 | 18635010 | 18634897 | ID=cds.MS.gene56925.t1;Parent=MS.gene56925.t1 |
| chr8.1 | exon | 18634694 | 18634713 | 18634694 | ID=MS.gene56925.t1.exon2;Parent=MS.gene56925.t1 |
| chr8.1 | CDS | 18634694 | 18634713 | 18634694 | ID=cds.MS.gene56925.t1;Parent=MS.gene56925.t1 |
| chr8.1 | exon | 18634156 | 18634165 | 18634156 | ID=MS.gene56925.t1.exon3;Parent=MS.gene56925.t1 |
| chr8.1 | CDS | 18634156 | 18634165 | 18634156 | ID=cds.MS.gene56925.t1;Parent=MS.gene56925.t1 |
| chr8.1 | exon | 18632757 | 18632822 | 18632757 | ID=MS.gene56925.t1.exon4;Parent=MS.gene56925.t1 |
| chr8.1 | CDS | 18632757 | 18632822 | 18632757 | ID=cds.MS.gene56925.t1;Parent=MS.gene56925.t1 |
| chr8.1 | exon | 18631699 | 18631902 | 18631699 | ID=MS.gene56925.t1.exon5;Parent=MS.gene56925.t1 |
| chr8.1 | CDS | 18631699 | 18631902 | 18631699 | ID=cds.MS.gene56925.t1;Parent=MS.gene56925.t1 |
| Gene Sequence |
| Protein sequence |
