Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene56984.t1 | XP_024640995.1 | 95.8 | 426 | 18 | 0 | 1 | 426 | 1 | 426 | 1.10E-241 | 845.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene56984.t1 | Q9FH50 | 59.6 | 413 | 141 | 3 | 15 | 426 | 15 | 402 | 1.2e-140 | 501.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene56984.t1 | A0A396HTC3 | 95.8 | 426 | 18 | 0 | 1 | 426 | 1 | 426 | 7.8e-242 | 845.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene56984 | MS.gene060083 | PPI |
| MS.gene59283 | MS.gene56984 | PPI |
| MS.gene80300 | MS.gene56984 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene56984.t1 | MTR_5g072520 | 96.622 | 296 | 10 | 0 | 130 | 425 | 1 | 296 | 0.0 | 611 |
| MS.gene56984.t1 | MTR_5g072520 | 32.990 | 97 | 64 | 1 | 112 | 208 | 175 | 270 | 8.53e-11 | 63.9 |
| MS.gene56984.t1 | MTR_2g088390 | 45.355 | 366 | 176 | 6 | 53 | 417 | 95 | 437 | 4.54e-104 | 316 |
| MS.gene56984.t1 | MTR_2g067610 | 46.176 | 340 | 161 | 4 | 78 | 417 | 2 | 319 | 3.24e-102 | 307 |
| MS.gene56984.t1 | MTR_6g059930 | 43.529 | 340 | 172 | 3 | 87 | 426 | 100 | 419 | 9.76e-98 | 299 |
| MS.gene56984.t1 | MTR_6g059930 | 43.768 | 345 | 164 | 4 | 87 | 426 | 132 | 451 | 3.45e-97 | 298 |
| MS.gene56984.t1 | MTR_2g088750 | 32.267 | 344 | 181 | 6 | 75 | 416 | 34 | 327 | 4.85e-53 | 181 |
| MS.gene56984.t1 | MTR_2g088750 | 26.207 | 145 | 105 | 1 | 259 | 403 | 29 | 171 | 2.45e-13 | 71.2 |
| MS.gene56984.t1 | MTR_1g054885 | 55.844 | 77 | 32 | 2 | 346 | 421 | 2 | 77 | 7.58e-18 | 78.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene56984.t1 | AT5G61930 | 59.564 | 413 | 141 | 3 | 15 | 426 | 15 | 402 | 1.53e-176 | 499 |
| MS.gene56984.t1 | AT5G61930 | 59.564 | 413 | 141 | 3 | 15 | 426 | 15 | 402 | 1.53e-176 | 499 |
| MS.gene56984.t1 | AT1G64810 | 39.840 | 374 | 206 | 5 | 53 | 426 | 82 | 436 | 3.15e-96 | 295 |
| MS.gene56984.t1 | AT1G64810 | 39.840 | 374 | 206 | 5 | 53 | 426 | 106 | 460 | 7.59e-96 | 295 |
| MS.gene56984.t1 | AT5G57930 | 42.466 | 365 | 187 | 6 | 53 | 417 | 92 | 433 | 3.91e-94 | 290 |
| MS.gene56984.t1 | AT5G57930 | 42.466 | 365 | 187 | 6 | 53 | 417 | 89 | 430 | 5.28e-94 | 290 |
| MS.gene56984.t1 | AT3G21740 | 31.875 | 320 | 161 | 7 | 95 | 411 | 55 | 320 | 6.51e-45 | 159 |
| MS.gene56984.t1 | AT3G21740 | 26.708 | 161 | 117 | 1 | 246 | 405 | 13 | 173 | 5.26e-13 | 70.1 |
Find 118 sgRNAs with CRISPR-Local
Find 169 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCATACAAATGAAAGCATTT+TGG | 0.148537 | 5.1:+55689735 | None:intergenic |
| TCAACATGCCAGACAAAATT+TGG | 0.212731 | 5.1:+55689162 | None:intergenic |
| GCCAGAGGGTTTCTACTTTC+CGG | 0.228283 | 5.1:-55690719 | MS.gene56984:CDS |
| AAGATGAAAGGAACAAATTA+AGG | 0.231802 | 5.1:-55689398 | MS.gene56984:CDS |
| AACAATCTCAAGAGATATTA+TGG | 0.273139 | 5.1:-55689114 | MS.gene56984:CDS |
| AGGTCAACTTCATCTCGTTC+TGG | 0.313030 | 5.1:+55689000 | None:intergenic |
| TAGACTTTGGACCTTCTCTA+AGG | 0.315242 | 5.1:+55689458 | None:intergenic |
| TGGATATTGTCCTGAGGTTC+AGG | 0.318362 | 5.1:-55689289 | MS.gene56984:CDS |
| ATATAGGACGAATCAGTTAA+AGG | 0.321577 | 5.1:+55689492 | None:intergenic |
| GTGGAACTCTGTGTGTATGC+TGG | 0.326170 | 5.1:-55689075 | MS.gene56984:CDS |
| CTTGCAATCAAAACTTTCAT+TGG | 0.334453 | 5.1:+55690857 | None:intergenic |
| GGGTTGGGTACGTCGGAGTA+TGG | 0.342711 | 5.1:+55690917 | None:intergenic |
| TGGATGTGAGGCGGTGGGAG+AGG | 0.352774 | 5.1:+55690996 | None:intergenic |
| AGAGGGTGGATGTGAGGCGG+TGG | 0.374028 | 5.1:+55690990 | None:intergenic |
| CTTCCTTCAATGCAATATAC+AGG | 0.382313 | 5.1:+55689585 | None:intergenic |
| TGGAACTCTGTGTGTATGCT+GGG | 0.382701 | 5.1:-55689074 | MS.gene56984:CDS |
| GCATACTCGCAGCGCAAAAC+GGG | 0.383508 | 5.1:+55690671 | None:intergenic |
| GCATTCCGTAGCCAACTCTT+TGG | 0.397826 | 5.1:+55689804 | None:intergenic |
| GGAGAACAAAATAAGTCATA+TGG | 0.409590 | 5.1:-55689433 | MS.gene56984:CDS |
| GGTCAACTTCATCTCGTTCT+GGG | 0.412824 | 5.1:+55689001 | None:intergenic |
| TCATGGTTTGAGATGATATC+AGG | 0.413415 | 5.1:-55689351 | MS.gene56984:CDS |
| AAACCTGTATATTGCATTGA+AGG | 0.421348 | 5.1:-55689588 | MS.gene56984:CDS |
| TATAGGACGAATCAGTTAAA+GGG | 0.423745 | 5.1:+55689493 | None:intergenic |
| TACGGAATGCAACTCATGTT+TGG | 0.424247 | 5.1:-55689791 | MS.gene56984:CDS |
| ATGCAACTCATGTTTGGAAA+AGG | 0.426037 | 5.1:-55689785 | MS.gene56984:CDS |
| GGGAGAGGCGGTTGAGGAGA+GGG | 0.427294 | 5.1:+55691011 | None:intergenic |
| CGAGGTTCACATTGGTTATG+TGG | 0.428357 | 5.1:-55689853 | MS.gene56984:CDS |
| GGCGGTGGGAGAGGCGGTTG+AGG | 0.430579 | 5.1:+55691005 | None:intergenic |
| ATCATGCTCTTATATTGATC+AGG | 0.430628 | 5.1:+55689042 | None:intergenic |
| GGGAATGCGTTGTCGGGATC+AGG | 0.434612 | 5.1:+55690938 | None:intergenic |
| CTCTTATATTGATCAGGAAC+TGG | 0.436806 | 5.1:+55689048 | None:intergenic |
| GGAGTATGGGAATGCGTTGT+CGG | 0.436867 | 5.1:+55690931 | None:intergenic |
| CTCTCATCATGCCCAACTCT+TGG | 0.445462 | 5.1:+55689699 | None:intergenic |
| TTGAGATTGTTATTCAGAGC+AGG | 0.449826 | 5.1:+55689126 | None:intergenic |
| GAGTATGGGAATGCGTTGTC+GGG | 0.452168 | 5.1:+55690932 | None:intergenic |
| TGCATACTCGCAGCGCAAAA+CGG | 0.456259 | 5.1:+55690670 | None:intergenic |
| TTGTATACAAAGTTCAACTA+TGG | 0.456978 | 5.1:+55689653 | None:intergenic |
| CATGAAATTCGAACATGTAC+TGG | 0.464615 | 5.1:-55689828 | MS.gene56984:CDS |
| GAGGGTGGATGTGAGGCGGT+GGG | 0.465523 | 5.1:+55690991 | None:intergenic |
| GGCACAAGCAACCCATTCTC+AGG | 0.467343 | 5.1:+55690776 | None:intergenic |
| CTAGAAGAGGCGCCTGAGAA+TGG | 0.470854 | 5.1:-55690788 | MS.gene56984:CDS |
| GGCAGAGAGAGAAGCACGAA+AGG | 0.476388 | 5.1:-55690828 | MS.gene56984:CDS |
| TGCAACTCATGTTTGGAAAA+GGG | 0.477947 | 5.1:-55689784 | MS.gene56984:CDS |
| TCGAACTAGTTGCTTCAAAC+CGG | 0.485922 | 5.1:+55690700 | None:intergenic |
| GTTGCTTGTGCCTGAGCTTG+TGG | 0.486787 | 5.1:-55690765 | MS.gene56984:CDS |
| ATTCTCAACTTATGTCCCTT+CGG | 0.486936 | 5.1:+55689261 | None:intergenic |
| TTCGGACCAACCTGAACCTC+AGG | 0.487485 | 5.1:+55689279 | None:intergenic |
| CTCGCAACTTCCACAAGCTC+AGG | 0.488137 | 5.1:+55690755 | None:intergenic |
| TAGAAGAGGCGCCTGAGAAT+GGG | 0.499758 | 5.1:-55690787 | MS.gene56984:CDS |
| ATACAAAGTTCAACTATGGC+AGG | 0.503508 | 5.1:+55689657 | None:intergenic |
| CGTGTTGGCAAGCCAAGAGT+TGG | 0.505066 | 5.1:-55689711 | MS.gene56984:CDS |
| AGATGAAAGGAACAAATTAA+GGG | 0.505884 | 5.1:-55689397 | MS.gene56984:CDS |
| GTATACATACATTGGACTCA+TGG | 0.507148 | 5.1:-55689368 | MS.gene56984:CDS |
| TTGTCGGGATCAGGTGAGTC+GGG | 0.509945 | 5.1:+55690947 | None:intergenic |
| TGGTAAGGCTCCCGCTGTTG+TGG | 0.512514 | 5.1:-55689094 | MS.gene56984:CDS |
| ACTTTCATTGGCGTCACGTA+GGG | 0.513231 | 5.1:+55690869 | None:intergenic |
| CAACTCTTGGCTTGCCAACA+CGG | 0.513950 | 5.1:+55689712 | None:intergenic |
| TGAGGTTCAGGTTGGTCCGA+AGG | 0.514842 | 5.1:-55689277 | MS.gene56984:CDS |
| GGTTGGGTACGTCGGAGTAT+GGG | 0.517051 | 5.1:+55690918 | None:intergenic |
| GTTGAACTTTGTATACAAGC+AGG | 0.518701 | 5.1:-55689648 | MS.gene56984:CDS |
| CTCGGAATGGTTTACATGCA+TGG | 0.519540 | 5.1:-55689215 | MS.gene56984:CDS |
| TGGGAGAGGCGGTTGAGGAG+AGG | 0.520553 | 5.1:+55691010 | None:intergenic |
| GGCAACATTAGATGATATTG+TGG | 0.532194 | 5.1:-55689187 | MS.gene56984:CDS |
| GGATTTAAGTATACATACAT+TGG | 0.535863 | 5.1:-55689376 | MS.gene56984:CDS |
| GTGTTGGCAAGCCAAGAGTT+GGG | 0.538886 | 5.1:-55689710 | MS.gene56984:CDS |
| ATGTGAGGCGGTGGGAGAGG+CGG | 0.539543 | 5.1:+55690999 | None:intergenic |
| ACCGGAAAGTAGAAACCCTC+TGG | 0.543290 | 5.1:+55690718 | None:intergenic |
| TCGGTTAGGGTTGGGTACGT+CGG | 0.544021 | 5.1:+55690910 | None:intergenic |
| ATCAGGTGCAAAGAAGATCA+TGG | 0.544243 | 5.1:-55689334 | MS.gene56984:CDS |
| GCAACTCATGTTTGGAAAAG+GGG | 0.553986 | 5.1:-55689783 | MS.gene56984:CDS |
| TATTGTCCTGAGGTTCAGGT+TGG | 0.554273 | 5.1:-55689285 | MS.gene56984:CDS |
| GGGACAAGTGTCGGATGTGA+AGG | 0.560421 | 5.1:+55690967 | None:intergenic |
| TGAGATTGTTATTCAGAGCA+GGG | 0.561964 | 5.1:+55689127 | None:intergenic |
| AATTTCATTATCTTCCGCAA+CGG | 0.564632 | 5.1:+55689545 | None:intergenic |
| ATCAGTTGAGTGAAGATGAA+AGG | 0.564636 | 5.1:-55689410 | MS.gene56984:CDS |
| CATGTACTGGACCAAAGAGT+TGG | 0.567295 | 5.1:-55689815 | MS.gene56984:CDS |
| ACACAGAGTTCCACAACAGC+GGG | 0.571280 | 5.1:+55689084 | None:intergenic |
| AGGAGAGGGTGGATGTGAGG+CGG | 0.571350 | 5.1:+55690987 | None:intergenic |
| CAAGAGTTGGGCATGATGAG+AGG | 0.572748 | 5.1:-55689698 | MS.gene56984:CDS |
| AAGTATGTTGTGAATACTTG+TGG | 0.576332 | 5.1:-55689309 | MS.gene56984:CDS |
| GATGATTGCGGTGGTGCGCA+TGG | 0.577947 | 5.1:+55691042 | None:intergenic |
| TCTCAAGAGATATTATGGTA+AGG | 0.578916 | 5.1:-55689109 | MS.gene56984:CDS |
| AGGTGAGTCGGGACAAGTGT+CGG | 0.586550 | 5.1:+55690958 | None:intergenic |
| GCATTTCACTTCAGGCAACA+AGG | 0.587451 | 5.1:+55688980 | None:intergenic |
| AGACTTTGGACCTTCTCTAA+GGG | 0.591995 | 5.1:+55689459 | None:intergenic |
| AACTTTCATTGGCGTCACGT+AGG | 0.595944 | 5.1:+55690868 | None:intergenic |
| TCAAAGCATCAGTCTCGGAA+TGG | 0.596875 | 5.1:-55689228 | MS.gene56984:CDS |
| GTCGGATGTGAAGGAGAGGG+TGG | 0.597060 | 5.1:+55690976 | None:intergenic |
| TGAAGGAGAGGGTGGATGTG+AGG | 0.597062 | 5.1:+55690984 | None:intergenic |
| GTTGTCGGGATCAGGTGAGT+CGG | 0.597063 | 5.1:+55690946 | None:intergenic |
| GCAACATTAGATGATATTGT+GGG | 0.597987 | 5.1:-55689186 | MS.gene56984:CDS |
| GAAGAGTTTATCAAGCCAGA+GGG | 0.598737 | 5.1:-55690733 | MS.gene56984:CDS |
| AGGGAGTTGAGAGATGATTG+CGG | 0.601953 | 5.1:+55691030 | None:intergenic |
| GCCTCTTCTAGAACTCTACA+AGG | 0.607418 | 5.1:+55690800 | None:intergenic |
| GTCAACTTCATCTCGTTCTG+GGG | 0.607681 | 5.1:+55689002 | None:intergenic |
| GTTAAAAGAGCCCTTAGAGA+AGG | 0.610085 | 5.1:-55689469 | MS.gene56984:CDS |
| GAGGTTCAGGTTGGTCCGAA+GGG | 0.611180 | 5.1:-55689276 | MS.gene56984:CDS |
| AGAAGAGTTTATCAAGCCAG+AGG | 0.612033 | 5.1:-55690734 | MS.gene56984:CDS |
| GAGGTTCACATTGGTTATGT+GGG | 0.612214 | 5.1:-55689852 | MS.gene56984:CDS |
| AGGCTTCAAAGCATCAGTCT+CGG | 0.613836 | 5.1:-55689233 | MS.gene56984:CDS |
| TCAACTATGGCAGGGATACG+TGG | 0.615033 | 5.1:+55689666 | None:intergenic |
| TGGCATGTTGAGGATCTGAA+TGG | 0.616186 | 5.1:-55689150 | MS.gene56984:CDS |
| TACAAAGTTCAACTATGGCA+GGG | 0.621420 | 5.1:+55689658 | None:intergenic |
| ACATAAGTTGAGAATGTGCA+AGG | 0.624521 | 5.1:-55689253 | MS.gene56984:CDS |
| TGGTTTACATGCATGGCAAG+AGG | 0.626947 | 5.1:-55689208 | MS.gene56984:CDS |
| AAGTGTCGGATGTGAAGGAG+AGG | 0.630432 | 5.1:+55690972 | None:intergenic |
| TTTCATTTGTATGACCGTGT+TGG | 0.631952 | 5.1:-55689726 | MS.gene56984:CDS |
| CTGGACCAAAGAGTTGGCTA+CGG | 0.635420 | 5.1:-55689809 | MS.gene56984:CDS |
| AAGGGGAGGTGTTCAAGACG+TGG | 0.647128 | 5.1:-55689766 | MS.gene56984:CDS |
| ACCTTGTAGAGTTCTAGAAG+AGG | 0.652489 | 5.1:-55690801 | MS.gene56984:CDS |
| CACACAGAGTTCCACAACAG+CGG | 0.659793 | 5.1:+55689083 | None:intergenic |
| AGAGAAGGTCCAAAGTCTAG+TGG | 0.660592 | 5.1:-55689454 | MS.gene56984:CDS |
| GGAACTCTGTGTGTATGCTG+GGG | 0.667564 | 5.1:-55689073 | MS.gene56984:CDS |
| ACTCATGTTTGGAAAAGGGG+AGG | 0.669405 | 5.1:-55689780 | MS.gene56984:CDS |
| GAGCATGATGAGATTAGACG+TGG | 0.679308 | 5.1:-55689028 | MS.gene56984:CDS |
| AGTGTCGGATGTGAAGGAGA+GGG | 0.685621 | 5.1:+55690973 | None:intergenic |
| TACTTGTGGATATTGTCCTG+AGG | 0.690759 | 5.1:-55689295 | MS.gene56984:CDS |
| GAGTTGAGAGATGATTGCGG+TGG | 0.777552 | 5.1:+55691033 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTCTTAAAAAAATAGAT+TGG | - | chr5.1:55689970-55689989 | MS.gene56984:intron | 10.0% |
| !! | ATTATACTTAAACAAAGTAT+TGG | + | chr5.1:55689632-55689651 | None:intergenic | 15.0% |
| !!! | TTTTTAAGAAAAATGACATA+TGG | + | chr5.1:55689963-55689982 | None:intergenic | 15.0% |
| !! | TTAATTTAAGAATCACACAA+AGG | + | chr5.1:55690021-55690040 | None:intergenic | 20.0% |
| !!! | GTTTTCTTTCTGATTTTATT+CGG | + | chr5.1:55689142-55689161 | None:intergenic | 20.0% |
| ! | AACAATCTCAAGAGATATTA+TGG | - | chr5.1:55690916-55690935 | MS.gene56984:CDS | 25.0% |
| ! | AAGATGAAAGGAACAAATTA+AGG | - | chr5.1:55690632-55690651 | MS.gene56984:intron | 25.0% |
| ! | AAGTGTTCAATGATTAGAAT+AGG | - | chr5.1:55689749-55689768 | MS.gene56984:CDS | 25.0% |
| ! | AATGCTAGAGACTAATTTAT+AGG | - | chr5.1:55689718-55689737 | MS.gene56984:CDS | 25.0% |
| ! | AGATGAAAGGAACAAATTAA+GGG | - | chr5.1:55690633-55690652 | MS.gene56984:intron | 25.0% |
| ! | AGTGTTCAATGATTAGAATA+GGG | - | chr5.1:55689750-55689769 | MS.gene56984:CDS | 25.0% |
| ! | ATGATGGTTAAGAATTTAAG+TGG | - | chr5.1:55689446-55689465 | MS.gene56984:CDS | 25.0% |
| ! | GGATTTAAGTATACATACAT+TGG | - | chr5.1:55690654-55690673 | MS.gene56984:intron | 25.0% |
| ! | TAAGGAATCACTTAATTGAT+GGG | + | chr5.1:55689796-55689815 | None:intergenic | 25.0% |
| ! | TTAAGGAATCACTTAATTGA+TGG | + | chr5.1:55689797-55689816 | None:intergenic | 25.0% |
| ! | TTGTATACAAAGTTCAACTA+TGG | + | chr5.1:55690380-55690399 | None:intergenic | 25.0% |
| !! | ACCTTAAACAACAAAAGTTT+TGG | - | chr5.1:55689831-55689850 | MS.gene56984:CDS | 25.0% |
| !! | TGATTAGAATAGGGTAATTT+TGG | - | chr5.1:55689759-55689778 | MS.gene56984:CDS | 25.0% |
| !! | TTTCTGATTTTATTCGGTTA+GGG | + | chr5.1:55689136-55689155 | None:intergenic | 25.0% |
| !! | TTTGAAGTAGAAAATGATGA+TGG | - | chr5.1:55689430-55689449 | MS.gene56984:CDS | 25.0% |
| !!! | AACAAAAGTTTTGGAATGTA+GGG | - | chr5.1:55689840-55689859 | MS.gene56984:CDS | 25.0% |
| !!! | AATGAAAGTTTTGATTGCAA+GGG | - | chr5.1:55689175-55689194 | MS.gene56984:CDS | 25.0% |
| !!! | ACTTAAACAAAGTATTGGAA+TGG | + | chr5.1:55689627-55689646 | None:intergenic | 25.0% |
| !!! | CATACAAATGAAAGCATTTT+GGG | + | chr5.1:55690297-55690316 | None:intergenic | 25.0% |
| !!! | TCATACAAATGAAAGCATTT+TGG | + | chr5.1:55690298-55690317 | None:intergenic | 25.0% |
| !!! | TCCAAAACTTTTGTTGTTTA+AGG | + | chr5.1:55689835-55689854 | None:intergenic | 25.0% |
| !!! | TCTAATGTTTTTGTACTTGT+TGG | - | chr5.1:55690116-55690135 | MS.gene56984:intron | 25.0% |
| !!! | TTTAATGGTTTTGACTTATC+AGG | - | chr5.1:55690146-55690165 | MS.gene56984:intron | 25.0% |
| AAACCTGTATATTGCATTGA+AGG | - | chr5.1:55690442-55690461 | MS.gene56984:intron | 30.0% | |
| AAGTATGTTGTGAATACTTG+TGG | - | chr5.1:55690721-55690740 | MS.gene56984:CDS | 30.0% | |
| AATTTCATTATCTTCCGCAA+CGG | + | chr5.1:55690488-55690507 | None:intergenic | 30.0% | |
| ATATAGGACGAATCAGTTAA+AGG | + | chr5.1:55690541-55690560 | None:intergenic | 30.0% | |
| ATCATGCTCTTATATTGATC+AGG | + | chr5.1:55690991-55691010 | None:intergenic | 30.0% | |
| CTTGCAATCAAAACTTTCAT+TGG | + | chr5.1:55689176-55689195 | None:intergenic | 30.0% | |
| GCAACATTAGATGATATTGT+GGG | - | chr5.1:55690844-55690863 | MS.gene56984:CDS | 30.0% | |
| GGAGAACAAAATAAGTCATA+TGG | - | chr5.1:55690597-55690616 | MS.gene56984:intron | 30.0% | |
| TAAGTGATTCCTTAATCTCT+GGG | - | chr5.1:55689802-55689821 | MS.gene56984:CDS | 30.0% | |
| TATAGGACGAATCAGTTAAA+GGG | + | chr5.1:55690540-55690559 | None:intergenic | 30.0% | |
| TCTCAAGAGATATTATGGTA+AGG | - | chr5.1:55690921-55690940 | MS.gene56984:CDS | 30.0% | |
| TGTTGAGAATTGAATTGCTT+AGG | + | chr5.1:55689529-55689548 | None:intergenic | 30.0% | |
| TTAAAAAATTTCCCACGAAG+AGG | - | chr5.1:55690413-55690432 | MS.gene56984:intron | 30.0% | |
| TTAAGTGATTCCTTAATCTC+TGG | - | chr5.1:55689801-55689820 | MS.gene56984:CDS | 30.0% | |
| ! | CTTTCTGATTTTATTCGGTT+AGG | + | chr5.1:55689137-55689156 | None:intergenic | 30.0% |
| ! | TAAGGGCTCTTTTAACATAT+AGG | + | chr5.1:55690557-55690576 | None:intergenic | 30.0% |
| !! | AGATTTTTGTGTCATTGATC+TGG | - | chr5.1:55690089-55690108 | MS.gene56984:intron | 30.0% |
| !! | GATTTTTGTGTCATTGATCT+GGG | - | chr5.1:55690090-55690109 | MS.gene56984:intron | 30.0% |
| !! | TAAACAAAGTATTGGAATGG+AGG | + | chr5.1:55689624-55689643 | None:intergenic | 30.0% |
| !!! | ATAGATTGGCTCGTTTTAAA+AGG | - | chr5.1:55689984-55690003 | MS.gene56984:intron | 30.0% |
| !!! | CAACAAAAGTTTTGGAATGT+AGG | - | chr5.1:55689839-55689858 | MS.gene56984:CDS | 30.0% |
| !!! | CAATGAAAGTTTTGATTGCA+AGG | - | chr5.1:55689174-55689193 | MS.gene56984:CDS | 30.0% |
| !!! | TCTTCGTGGGAAATTTTTTA+AGG | + | chr5.1:55690414-55690433 | None:intergenic | 30.0% |
| ATACAAAGTTCAACTATGGC+AGG | + | chr5.1:55690376-55690395 | None:intergenic | 35.0% | |
| ATCAGTTGAGTGAAGATGAA+AGG | - | chr5.1:55690620-55690639 | MS.gene56984:intron | 35.0% | |
| ATGCAACTCATGTTTGGAAA+AGG | - | chr5.1:55690245-55690264 | MS.gene56984:intron | 35.0% | |
| ATTCTCAACTTATGTCCCTT+CGG | + | chr5.1:55690772-55690791 | None:intergenic | 35.0% | |
| CATGAAATTCGAACATGTAC+TGG | - | chr5.1:55690202-55690221 | MS.gene56984:intron | 35.0% | |
| CTCTTATATTGATCAGGAAC+TGG | + | chr5.1:55690985-55691004 | None:intergenic | 35.0% | |
| CTTCCTTCAATGCAATATAC+AGG | + | chr5.1:55690448-55690467 | None:intergenic | 35.0% | |
| GGCAACATTAGATGATATTG+TGG | - | chr5.1:55690843-55690862 | MS.gene56984:CDS | 35.0% | |
| GTATACATACATTGGACTCA+TGG | - | chr5.1:55690662-55690681 | MS.gene56984:intron | 35.0% | |
| GTTGAACTTTGTATACAAGC+AGG | - | chr5.1:55690382-55690401 | MS.gene56984:intron | 35.0% | |
| TACAAAGTTCAACTATGGCA+GGG | + | chr5.1:55690375-55690394 | None:intergenic | 35.0% | |
| TCAACATGCCAGACAAAATT+TGG | + | chr5.1:55690871-55690890 | None:intergenic | 35.0% | |
| TGCAACTCATGTTTGGAAAA+GGG | - | chr5.1:55690246-55690265 | MS.gene56984:intron | 35.0% | |
| TTTCATTTGTATGACCGTGT+TGG | - | chr5.1:55690304-55690323 | MS.gene56984:intron | 35.0% | |
| ! | AAATTTTGTCTGGCATGTTG+AGG | - | chr5.1:55690870-55690889 | MS.gene56984:CDS | 35.0% |
| ! | ACATAAGTTGAGAATGTGCA+AGG | - | chr5.1:55690777-55690796 | MS.gene56984:CDS | 35.0% |
| ! | GAATCACACAAAGGCATATT+TGG | + | chr5.1:55690012-55690031 | None:intergenic | 35.0% |
| ! | GATTTTATTCGGTTAGGGTT+GGG | + | chr5.1:55689131-55689150 | None:intergenic | 35.0% |
| ! | TCATGGTTTGAGATGATATC+AGG | - | chr5.1:55690679-55690698 | MS.gene56984:CDS | 35.0% |
| ! | TGAGATTGTTATTCAGAGCA+GGG | + | chr5.1:55690906-55690925 | None:intergenic | 35.0% |
| ! | TGATTTTATTCGGTTAGGGT+TGG | + | chr5.1:55689132-55689151 | None:intergenic | 35.0% |
| ! | TTGAGATTGTTATTCAGAGC+AGG | + | chr5.1:55690907-55690926 | None:intergenic | 35.0% |
| ! | TTTTGTAACGAGGTTCACAT+TGG | - | chr5.1:55690169-55690188 | MS.gene56984:intron | 35.0% |
| ! | TTTTGTTCTCCACTAGACTT+TGG | + | chr5.1:55690588-55690607 | None:intergenic | 35.0% |
| !! | ACTTATCAGGTTTTGTAACG+AGG | - | chr5.1:55690159-55690178 | MS.gene56984:intron | 35.0% |
| !! | CTTGTTGGCTTCACATTTAA+TGG | - | chr5.1:55690131-55690150 | MS.gene56984:intron | 35.0% |
| !!! | GTCTCTAGCATTTTGAAATG+AGG | + | chr5.1:55689710-55689729 | None:intergenic | 35.0% |
| AGAAGAGTTTATCAAGCCAG+AGG | - | chr5.1:55689296-55689315 | MS.gene56984:CDS | 40.0% | |
| AGACTTTGGACCTTCTCTAA+GGG | + | chr5.1:55690574-55690593 | None:intergenic | 40.0% | |
| ATCAGGTGCAAAGAAGATCA+TGG | - | chr5.1:55690696-55690715 | MS.gene56984:CDS | 40.0% | |
| CTGATGTGAGGGAAAATAAC+AGG | - | chr5.1:55689910-55689929 | MS.gene56984:intron | 40.0% | |
| GAAGAGTTTATCAAGCCAGA+GGG | - | chr5.1:55689297-55689316 | MS.gene56984:CDS | 40.0% | |
| GCAACTCATGTTTGGAAAAG+GGG | - | chr5.1:55690247-55690266 | MS.gene56984:intron | 40.0% | |
| GTTAAAAGAGCCCTTAGAGA+AGG | - | chr5.1:55690561-55690580 | MS.gene56984:intron | 40.0% | |
| TACGGAATGCAACTCATGTT+TGG | - | chr5.1:55690239-55690258 | MS.gene56984:intron | 40.0% | |
| TACTTGTGGATATTGTCCTG+AGG | - | chr5.1:55690735-55690754 | MS.gene56984:CDS | 40.0% | |
| TAGACTTTGGACCTTCTCTA+AGG | + | chr5.1:55690575-55690594 | None:intergenic | 40.0% | |
| TCGAACTAGTTGCTTCAAAC+CGG | + | chr5.1:55689333-55689352 | None:intergenic | 40.0% | |
| ! | GAGGTTCACATTGGTTATGT+GGG | - | chr5.1:55690178-55690197 | MS.gene56984:intron | 40.0% |
| ! | GGTATTTTGCCCAGAGATTA+AGG | + | chr5.1:55689814-55689833 | None:intergenic | 40.0% |
| ! | GTAAGATTGCACTGATGTGA+GGG | - | chr5.1:55689899-55689918 | MS.gene56984:intron | 40.0% |
| ! | TGCAGATTTTGAATCCGTTG+CGG | - | chr5.1:55690471-55690490 | MS.gene56984:intron | 40.0% |
| ! | TGTAAGATTGCACTGATGTG+AGG | - | chr5.1:55689898-55689917 | MS.gene56984:intron | 40.0% |
| ! | TTGTGGGTCCAAATTTTGTC+TGG | - | chr5.1:55690860-55690879 | MS.gene56984:CDS | 40.0% |
| !! | ACCTTGTAGAGTTCTAGAAG+AGG | - | chr5.1:55689229-55689248 | MS.gene56984:CDS | 40.0% |
| AACTTTCATTGGCGTCACGT+AGG | + | chr5.1:55689165-55689184 | None:intergenic | 45.0% | |
| ACTCATGTTTGGAAAAGGGG+AGG | - | chr5.1:55690250-55690269 | MS.gene56984:intron | 45.0% | |
| ACTTTCATTGGCGTCACGTA+GGG | + | chr5.1:55689164-55689183 | None:intergenic | 45.0% | |
| AGAGAAGGTCCAAAGTCTAG+TGG | - | chr5.1:55690576-55690595 | MS.gene56984:intron | 45.0% | |
| AGGGAGTTGAGAGATGATTG+CGG | + | chr5.1:55689003-55689022 | None:intergenic | 45.0% | |
| AGGTCAACTTCATCTCGTTC+TGG | + | chr5.1:55691033-55691052 | None:intergenic | 45.0% | |
| CATGTACTGGACCAAAGAGT+TGG | - | chr5.1:55690215-55690234 | MS.gene56984:intron | 45.0% | |
| CTCGGAATGGTTTACATGCA+TGG | - | chr5.1:55690815-55690834 | MS.gene56984:CDS | 45.0% | |
| GAGCATGATGAGATTAGACG+TGG | - | chr5.1:55691002-55691021 | MS.gene56984:CDS | 45.0% | |
| GGTCAACTTCATCTCGTTCT+GGG | + | chr5.1:55691032-55691051 | None:intergenic | 45.0% | |
| GTCAACTTCATCTCGTTCTG+GGG | + | chr5.1:55691031-55691050 | None:intergenic | 45.0% | |
| TATTGTCCTGAGGTTCAGGT+TGG | - | chr5.1:55690745-55690764 | MS.gene56984:CDS | 45.0% | |
| TGGAACTCTGTGTGTATGCT+GGG | - | chr5.1:55690956-55690975 | MS.gene56984:CDS | 45.0% | |
| TGGATATTGTCCTGAGGTTC+AGG | - | chr5.1:55690741-55690760 | MS.gene56984:CDS | 45.0% | |
| TGGCATGTTGAGGATCTGAA+TGG | - | chr5.1:55690880-55690899 | MS.gene56984:CDS | 45.0% | |
| TGGTTTACATGCATGGCAAG+AGG | - | chr5.1:55690822-55690841 | MS.gene56984:CDS | 45.0% | |
| ! | AGGCTTCAAAGCATCAGTCT+CGG | - | chr5.1:55690797-55690816 | MS.gene56984:CDS | 45.0% |
| ! | CGAGGTTCACATTGGTTATG+TGG | - | chr5.1:55690177-55690196 | MS.gene56984:intron | 45.0% |
| ! | TCAAAGCATCAGTCTCGGAA+TGG | - | chr5.1:55690802-55690821 | MS.gene56984:CDS | 45.0% |
| !! | GCCTCTTCTAGAACTCTACA+AGG | + | chr5.1:55689233-55689252 | None:intergenic | 45.0% |
| !!! | AGGTTTTGTTCTCCTCTTCG+TGG | + | chr5.1:55690428-55690447 | None:intergenic | 45.0% |
| !!! | AGTTTTGATTGCAAGGGCGA+AGG | - | chr5.1:55689181-55689200 | MS.gene56984:CDS | 45.0% |
| !!! | GGTTTTGTTCTCCTCTTCGT+GGG | + | chr5.1:55690427-55690446 | None:intergenic | 45.0% |
| ACACAGAGTTCCACAACAGC+GGG | + | chr5.1:55690949-55690968 | None:intergenic | 50.0% | |
| ACCGGAAAGTAGAAACCCTC+TGG | + | chr5.1:55689315-55689334 | None:intergenic | 50.0% | |
| CAAGAGTTGGGCATGATGAG+AGG | - | chr5.1:55690332-55690351 | MS.gene56984:intron | 50.0% | |
| CACACAGAGTTCCACAACAG+CGG | + | chr5.1:55690950-55690969 | None:intergenic | 50.0% | |
| CTCTCATCATGCCCAACTCT+TGG | + | chr5.1:55690334-55690353 | None:intergenic | 50.0% | |
| CTGGACCAAAGAGTTGGCTA+CGG | - | chr5.1:55690221-55690240 | MS.gene56984:intron | 50.0% | |
| GAGTATGGGAATGCGTTGTC+GGG | + | chr5.1:55689101-55689120 | None:intergenic | 50.0% | |
| GAGTTGAGAGATGATTGCGG+TGG | + | chr5.1:55689000-55689019 | None:intergenic | 50.0% | |
| GCATTCCGTAGCCAACTCTT+TGG | + | chr5.1:55690229-55690248 | None:intergenic | 50.0% | |
| GCCAGAGGGTTTCTACTTTC+CGG | - | chr5.1:55689311-55689330 | MS.gene56984:CDS | 50.0% | |
| GGAACTCTGTGTGTATGCTG+GGG | - | chr5.1:55690957-55690976 | MS.gene56984:CDS | 50.0% | |
| GGAGTATGGGAATGCGTTGT+CGG | + | chr5.1:55689102-55689121 | None:intergenic | 50.0% | |
| GTGGAACTCTGTGTGTATGC+TGG | - | chr5.1:55690955-55690974 | MS.gene56984:CDS | 50.0% | |
| TCAACTATGGCAGGGATACG+TGG | + | chr5.1:55690367-55690386 | None:intergenic | 50.0% | |
| TGCATACTCGCAGCGCAAAA+CGG | + | chr5.1:55689363-55689382 | None:intergenic | 50.0% | |
| ! | AGTGTCGGATGTGAAGGAGA+GGG | + | chr5.1:55689060-55689079 | None:intergenic | 50.0% |
| ! | GTGTTGGCAAGCCAAGAGTT+GGG | - | chr5.1:55690320-55690339 | MS.gene56984:intron | 50.0% |
| !! | AAGTGTCGGATGTGAAGGAG+AGG | + | chr5.1:55689061-55689080 | None:intergenic | 50.0% |
| !! | CAACTCTTGGCTTGCCAACA+CGG | + | chr5.1:55690321-55690340 | None:intergenic | 50.0% |
| !! | TAGAAGAGGCGCCTGAGAAT+GGG | - | chr5.1:55689243-55689262 | MS.gene56984:CDS | 50.0% |
| AGGTGAGTCGGGACAAGTGT+CGG | + | chr5.1:55689075-55689094 | None:intergenic | 55.0% | |
| CTCGCAACTTCCACAAGCTC+AGG | + | chr5.1:55689278-55689297 | None:intergenic | 55.0% | |
| GCATACTCGCAGCGCAAAAC+GGG | + | chr5.1:55689362-55689381 | None:intergenic | 55.0% | |
| GGCACAAGCAACCCATTCTC+AGG | + | chr5.1:55689257-55689276 | None:intergenic | 55.0% | |
| GGTTGGGTACGTCGGAGTAT+GGG | + | chr5.1:55689115-55689134 | None:intergenic | 55.0% | |
| GTTGCTTGTGCCTGAGCTTG+TGG | - | chr5.1:55689265-55689284 | MS.gene56984:CDS | 55.0% | |
| GTTGTCGGGATCAGGTGAGT+CGG | + | chr5.1:55689087-55689106 | None:intergenic | 55.0% | |
| TCGGTTAGGGTTGGGTACGT+CGG | + | chr5.1:55689123-55689142 | None:intergenic | 55.0% | |
| TGAAGGAGAGGGTGGATGTG+AGG | + | chr5.1:55689049-55689068 | None:intergenic | 55.0% | |
| TTCGGACCAACCTGAACCTC+AGG | + | chr5.1:55690754-55690773 | None:intergenic | 55.0% | |
| TTGTCGGGATCAGGTGAGTC+GGG | + | chr5.1:55689086-55689105 | None:intergenic | 55.0% | |
| ! | CGTGTTGGCAAGCCAAGAGT+TGG | - | chr5.1:55690319-55690338 | MS.gene56984:intron | 55.0% |
| ! | GGCAGAGAGAGAAGCACGAA+AGG | - | chr5.1:55689202-55689221 | MS.gene56984:CDS | 55.0% |
| !! | AAGGGGAGGTGTTCAAGACG+TGG | - | chr5.1:55690264-55690283 | MS.gene56984:intron | 55.0% |
| !! | CTAGAAGAGGCGCCTGAGAA+TGG | - | chr5.1:55689242-55689261 | MS.gene56984:CDS | 55.0% |
| !! | GAGGTTCAGGTTGGTCCGAA+GGG | - | chr5.1:55690754-55690773 | MS.gene56984:CDS | 55.0% |
| !! | GGGACAAGTGTCGGATGTGA+AGG | + | chr5.1:55689066-55689085 | None:intergenic | 55.0% |
| !! | TGAGGTTCAGGTTGGTCCGA+AGG | - | chr5.1:55690753-55690772 | MS.gene56984:CDS | 55.0% |
| AGGAGAGGGTGGATGTGAGG+CGG | + | chr5.1:55689046-55689065 | None:intergenic | 60.0% | |
| GGGAATGCGTTGTCGGGATC+AGG | + | chr5.1:55689095-55689114 | None:intergenic | 60.0% | |
| GGGTTGGGTACGTCGGAGTA+TGG | + | chr5.1:55689116-55689135 | None:intergenic | 60.0% | |
| GTCGGATGTGAAGGAGAGGG+TGG | + | chr5.1:55689057-55689076 | None:intergenic | 60.0% | |
| TGGTAAGGCTCCCGCTGTTG+TGG | - | chr5.1:55690936-55690955 | MS.gene56984:CDS | 60.0% | |
| AGAGGGTGGATGTGAGGCGG+TGG | + | chr5.1:55689043-55689062 | None:intergenic | 65.0% | |
| ATGTGAGGCGGTGGGAGAGG+CGG | + | chr5.1:55689034-55689053 | None:intergenic | 65.0% | |
| GAGGGTGGATGTGAGGCGGT+GGG | + | chr5.1:55689042-55689061 | None:intergenic | 65.0% | |
| GGGAGAGGCGGTTGAGGAGA+GGG | + | chr5.1:55689022-55689041 | None:intergenic | 65.0% | |
| TGGATGTGAGGCGGTGGGAG+AGG | + | chr5.1:55689037-55689056 | None:intergenic | 65.0% | |
| TGGGAGAGGCGGTTGAGGAG+AGG | + | chr5.1:55689023-55689042 | None:intergenic | 65.0% | |
| GGCGGTGGGAGAGGCGGTTG+AGG | + | chr5.1:55689028-55689047 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.1 | gene | 55688990 | 55691062 | 55688990 | ID=MS.gene56984 |
| chr5.1 | mRNA | 55688990 | 55691062 | 55688990 | ID=MS.gene56984.t1;Parent=MS.gene56984 |
| chr5.1 | exon | 55690677 | 55691062 | 55690677 | ID=MS.gene56984.t1.exon1;Parent=MS.gene56984.t1 |
| chr5.1 | CDS | 55690677 | 55691062 | 55690677 | ID=cds.MS.gene56984.t1;Parent=MS.gene56984.t1 |
| chr5.1 | exon | 55688990 | 55689884 | 55688990 | ID=MS.gene56984.t1.exon2;Parent=MS.gene56984.t1 |
| chr5.1 | CDS | 55688990 | 55689884 | 55688990 | ID=cds.MS.gene56984.t1;Parent=MS.gene56984.t1 |
| Gene Sequence |
| Protein sequence |
