Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene57025.t1 | RHN56509.1 | 78.6 | 327 | 46 | 5 | 1 | 305 | 1 | 325 | 2.90E-123 | 451.8 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene57025.t1 | A0A396HT34 | 78.6 | 327 | 46 | 5 | 1 | 305 | 1 | 325 | 2.1e-123 | 451.8 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene050020 | MS.gene57025 | 0.849331 | 3.46E-60 | -1.69E-46 |
MS.gene050807 | MS.gene57025 | 0.81842 | 1.98E-52 | -1.69E-46 |
MS.gene05157 | MS.gene57025 | 0.82053 | 6.53E-53 | -1.69E-46 |
MS.gene051719 | MS.gene57025 | 0.826119 | 3.23E-54 | -1.69E-46 |
MS.gene051720 | MS.gene57025 | 0.826451 | 2.69E-54 | -1.69E-46 |
MS.gene052665 | MS.gene57025 | 0.809568 | 1.77E-50 | -1.69E-46 |
MS.gene054791 | MS.gene57025 | 0.810085 | 1.37E-50 | -1.69E-46 |
MS.gene055465 | MS.gene57025 | 0.808249 | 3.40E-50 | -1.69E-46 |
MS.gene055466 | MS.gene57025 | 0.806027 | 1.00E-49 | -1.69E-46 |
MS.gene060519 | MS.gene57025 | 0.801249 | 9.84E-49 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene57025.t1 | MTR_5g071090 | 77.358 | 318 | 21 | 5 | 25 | 323 | 27 | 312 | 1.52e-161 | 454 |
MS.gene57025.t1 | MTR_3g464300 | 33.673 | 392 | 154 | 12 | 26 | 320 | 27 | 409 | 5.78e-43 | 154 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Find 36 sgRNAs with CRISPR-Local
Find 105 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
ACAATGAGTGTGTAGATATT+TGG | 0.183054 | 5.1:-54878764 | MS.gene57025:CDS |
TGGTGTAGTTGCAAGGTTAA+TGG | 0.255423 | 5.1:-54879758 | MS.gene57025:CDS |
AAGAGTTTGTTTAAGGAAGT+TGG | 0.287665 | 5.1:-54879481 | MS.gene57025:CDS |
GGTGTAGTTGCAAGGTTAAT+GGG | 0.347018 | 5.1:-54879757 | MS.gene57025:CDS |
TGAAGAAGAGAGAAAAGTTA+AGG | 0.378603 | 5.1:-54878835 | MS.gene57025:CDS |
TCAAAATCAAAGACAGAAAC+AGG | 0.397845 | 5.1:+54879367 | None:intergenic |
GAGCATGATGTTTCTGGAAC+AGG | 0.399353 | 5.1:-54879346 | MS.gene57025:intron |
AGTTGCAAGGTTAATGGGAT+TGG | 0.401363 | 5.1:-54879752 | MS.gene57025:CDS |
CAAGCTAGTTGATGATGAAT+TGG | 0.402114 | 5.1:-54878730 | MS.gene57025:CDS |
CAAAGGAAGAAGAAAAGAAA+AGG | 0.402477 | 5.1:-54879572 | MS.gene57025:CDS |
GAAATTATAGTTCTAGTAGT+AGG | 0.402687 | 5.1:+54879793 | None:intergenic |
CTTCGACTTGGAGTTGAAGC+TGG | 0.417403 | 5.1:-54877567 | MS.gene57025:CDS |
GTTAATGGGATTGGATTCAA+TGG | 0.432909 | 5.1:-54879743 | MS.gene57025:CDS |
ATTGAGAACAATTTGAATGA+AGG | 0.441642 | 5.1:-54878810 | MS.gene57025:CDS |
CTTCTTCTGGTGTAGTTGCA+AGG | 0.448678 | 5.1:-54879765 | MS.gene57025:CDS |
TTGTTTAAGGAAGTTGGAAA+TGG | 0.464241 | 5.1:-54879475 | MS.gene57025:intron |
GACACTTCTTCGTGAGCTGC+TGG | 0.465029 | 5.1:-54877610 | MS.gene57025:CDS |
ATTATAGTTCTAGTAGTAGG+AGG | 0.474477 | 5.1:+54879796 | None:intergenic |
TTGAAAATTCTCCTTCGACT+TGG | 0.485073 | 5.1:-54877579 | MS.gene57025:CDS |
TTTGTGATGTTGATATGAGT+TGG | 0.497412 | 5.1:-54878929 | MS.gene57025:CDS |
GTGAATTGCATGAAGTAAAG+AGG | 0.512937 | 5.1:-54878698 | MS.gene57025:CDS |
TTGCAATGTGTAAGTGAACT+TGG | 0.522297 | 5.1:+54879694 | None:intergenic |
GGATTGGATTCAATGGAAGA+AGG | 0.529487 | 5.1:-54879736 | MS.gene57025:CDS |
CTAGTTGATGATGAATTGGT+TGG | 0.537429 | 5.1:-54878726 | MS.gene57025:CDS |
CAGAATGTTGAATAAAGAGC+TGG | 0.546875 | 5.1:+54878874 | None:intergenic |
AGTAGAAAATTCAAGTCCAA+AGG | 0.548034 | 5.1:-54879589 | MS.gene57025:CDS |
AAAGGAAGAAGAAAAGAAAA+GGG | 0.548330 | 5.1:-54879571 | MS.gene57025:CDS |
GATTGGATTCAATGGAAGAA+GGG | 0.549935 | 5.1:-54879735 | MS.gene57025:CDS |
TTGGTGTTTAGCTTTGAAAG+TGG | 0.552499 | 5.1:-54879619 | MS.gene57025:CDS |
TTATAGTTCTAGTAGTAGGA+GGG | 0.559285 | 5.1:+54879797 | None:intergenic |
TCAAGCAAATGAAAAGCTTG+TGG | 0.565993 | 5.1:+54879655 | None:intergenic |
ACTTCTTCGTGAGCTGCTGG+TGG | 0.588466 | 5.1:-54877607 | MS.gene57025:CDS |
CTAAAGTTTGATGAAGATGA+TGG | 0.588538 | 5.1:+54879946 | None:intergenic |
AGAGAAAAGGTGAATGATGA+TGG | 0.597704 | 5.1:-54879520 | MS.gene57025:CDS |
CAGCTTCAACTCCAAGTCGA+AGG | 0.616409 | 5.1:+54877568 | None:intergenic |
GTGTTTAGCTTTGAAAGTGG+AGG | 0.617135 | 5.1:-54879616 | MS.gene57025:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AAAATTGAAAAAACAATTAA+AGG | + | chr5.1:54878890-54878909 | None:intergenic | 10.0% |
!! | ACTATTTCCAAAAAATAAAA+AGG | + | chr5.1:54878268-54878287 | None:intergenic | 15.0% |
!!! | AATTTTTTTTTTTTGAAGGA+AGG | + | chr5.1:54879518-54879537 | None:intergenic | 15.0% |
!!! | TCAAATTTTCAATTGTAAAT+TGG | - | chr5.1:54879183-54879202 | MS.gene57025:intron | 15.0% |
!! | AAATTTGAATGAAATAGTAC+AGG | + | chr5.1:54879171-54879190 | None:intergenic | 20.0% |
!! | CAAATTTAATACATGGAAAA+CGG | + | chr5.1:54878402-54878421 | None:intergenic | 20.0% |
!! | TAATCCTGAAAAAAAAAGAA+AGG | + | chr5.1:54879916-54879935 | None:intergenic | 20.0% |
!! | TAGTTAGCAAATTTAATACA+TGG | + | chr5.1:54878409-54878428 | None:intergenic | 20.0% |
!! | TTGATAAGAGAAAAGAAAAT+TGG | + | chr5.1:54879076-54879095 | None:intergenic | 20.0% |
!!! | ATTATTTCAACAAGCTTTTA+AGG | - | chr5.1:54878188-54878207 | MS.gene57025:intron | 20.0% |
!!! | GATCTTACCTTTTTATTTTT+TGG | - | chr5.1:54878258-54878277 | MS.gene57025:intron | 20.0% |
!!! | GGCTAATTTTTTTTTTTTGA+AGG | + | chr5.1:54879522-54879541 | None:intergenic | 20.0% |
!!! | TAATCCTTTCTTTTTTTTTC+AGG | - | chr5.1:54879909-54879928 | MS.gene57025:CDS | 20.0% |
! | AAAGGAAGAAGAAAAGAAAA+GGG | - | chr5.1:54877820-54877839 | MS.gene57025:intron | 25.0% |
! | AATTTAATGCATGTTTGGAT+TGG | - | chr5.1:54878116-54878135 | MS.gene57025:intron | 25.0% |
! | ATAAACAATTAGGTCATGTT+TGG | + | chr5.1:54878329-54878348 | None:intergenic | 25.0% |
! | ATAATTTCTTCTTCTTCTTC+TGG | - | chr5.1:54877613-54877632 | MS.gene57025:CDS | 25.0% |
! | ATTGAGAACAATTTGAATGA+AGG | - | chr5.1:54878581-54878600 | MS.gene57025:intron | 25.0% |
! | CACTATGTATCTAAATTCTA+AGG | + | chr5.1:54878366-54878385 | None:intergenic | 25.0% |
! | CTAACTCATTTAACTAACTA+AGG | + | chr5.1:54878996-54879015 | None:intergenic | 25.0% |
! | TAGATTGTTAAACACATTGA+GGG | - | chr5.1:54879660-54879679 | MS.gene57025:CDS | 25.0% |
! | TTAACAATCTAAACTGTGTT+TGG | + | chr5.1:54879651-54879670 | None:intergenic | 25.0% |
! | TTAAGGATAGCTTATGAAAA+CGG | - | chr5.1:54878205-54878224 | MS.gene57025:intron | 25.0% |
! | TTAGATTGTTAAACACATTG+AGG | - | chr5.1:54879659-54879678 | MS.gene57025:CDS | 25.0% |
! | TTCTCTAATCCTATGAAAAA+TGG | + | chr5.1:54877524-54877543 | None:intergenic | 25.0% |
! | TTGTGTTTGCATAAACAATT+AGG | + | chr5.1:54878339-54878358 | None:intergenic | 25.0% |
!!! | GAAATTATAGTTCTAGTAGT+AGG | + | chr5.1:54877601-54877620 | None:intergenic | 25.0% |
!!! | TTTTGAGAAGAGTTTGTTTA+AGG | - | chr5.1:54877903-54877922 | MS.gene57025:intron | 25.0% |
AACAGTGTGATAATAATGTG+TGG | - | chr5.1:54879740-54879759 | MS.gene57025:CDS | 30.0% | |
AAGGATCAAAGAAAAAAGAG+AGG | - | chr5.1:54878600-54878619 | MS.gene57025:intron | 30.0% | |
ACAATGAGTGTGTAGATATT+TGG | - | chr5.1:54878627-54878646 | MS.gene57025:CDS | 30.0% | |
AGATTGTTAAACACATTGAG+GGG | - | chr5.1:54879661-54879680 | MS.gene57025:CDS | 30.0% | |
AGTAGAAAATTCAAGTCCAA+AGG | - | chr5.1:54877802-54877821 | MS.gene57025:intron | 30.0% | |
ATCTAAACTGTGTTTGGATT+TGG | + | chr5.1:54879645-54879664 | None:intergenic | 30.0% | |
CAAAGGAAGAAGAAAAGAAA+AGG | - | chr5.1:54877819-54877838 | MS.gene57025:intron | 30.0% | |
CATATATAAACATGTTGCAG+AGG | - | chr5.1:54878433-54878452 | MS.gene57025:intron | 30.0% | |
CCAAACATGCATTAAATTTG+AGG | + | chr5.1:54878114-54878133 | None:intergenic | 30.0% | |
CCTCAAATTTAATGCATGTT+TGG | - | chr5.1:54878111-54878130 | MS.gene57025:intron | 30.0% | |
CTAAAGTTTGATGAAGATGA+TGG | + | chr5.1:54877448-54877467 | None:intergenic | 30.0% | |
CTATTGAAATGCTCATAAGT+TGG | - | chr5.1:54878159-54878178 | MS.gene57025:intron | 30.0% | |
GAAGAAAAACAAGAGAGAAA+AGG | - | chr5.1:54877858-54877877 | MS.gene57025:intron | 30.0% | |
GTACAGGTAGAGAAAAATAA+AGG | + | chr5.1:54879155-54879174 | None:intergenic | 30.0% | |
TCAAAATCAAAGACAGAAAC+AGG | + | chr5.1:54878027-54878046 | None:intergenic | 30.0% | |
TGAAGAAGAGAGAAAAGTTA+AGG | - | chr5.1:54878556-54878575 | MS.gene57025:intron | 30.0% | |
TTCAATTGTAAATTGGCACA+TGG | - | chr5.1:54879190-54879209 | MS.gene57025:intron | 30.0% | |
TTGTTTAAGGAAGTTGGAAA+TGG | - | chr5.1:54877916-54877935 | MS.gene57025:intron | 30.0% | |
TTTGTGATGTTGATATGAGT+TGG | - | chr5.1:54878462-54878481 | MS.gene57025:intron | 30.0% | |
! | AAGAGTTTGTTTAAGGAAGT+TGG | - | chr5.1:54877910-54877929 | MS.gene57025:intron | 30.0% |
! | ATCTGAGACTGAATTATTAG+TGG | + | chr5.1:54879545-54879564 | None:intergenic | 30.0% |
! | CTTTTCTTTTCTTCTTCCTT+TGG | + | chr5.1:54877821-54877840 | None:intergenic | 30.0% |
! | GCTTGAAAATGAGAACTTTT+TGG | - | chr5.1:54877753-54877772 | MS.gene57025:intron | 30.0% |
! | TCTGAGACTGAATTATTAGT+GGG | + | chr5.1:54879544-54879563 | None:intergenic | 30.0% |
!! | ATTATAGTTCTAGTAGTAGG+AGG | + | chr5.1:54877598-54877617 | None:intergenic | 30.0% |
!! | GTTTCACAACCATTTTTCAT+AGG | - | chr5.1:54877512-54877531 | MS.gene57025:intron | 30.0% |
!! | TTATAGTTCTAGTAGTAGGA+GGG | + | chr5.1:54877597-54877616 | None:intergenic | 30.0% |
!!! | GGAAGGAAGACTAAATTTTT+TGG | + | chr5.1:54879501-54879520 | None:intergenic | 30.0% |
AACATGTTGTGTTGAAGAGA+AGG | - | chr5.1:54877969-54877988 | MS.gene57025:intron | 35.0% | |
AGAGAAAAGGTGAATGATGA+TGG | - | chr5.1:54877871-54877890 | MS.gene57025:intron | 35.0% | |
AGTTGAAGCTGGAATAGTAA+GGG | - | chr5.1:54879835-54879854 | MS.gene57025:CDS | 35.0% | |
ATTGAGGGGAAAAACTTCAT+AGG | - | chr5.1:54879675-54879694 | MS.gene57025:CDS | 35.0% | |
CAGAATGTTGAATAAAGAGC+TGG | + | chr5.1:54878520-54878539 | None:intergenic | 35.0% | |
CTGAGACTGAATTATTAGTG+GGG | + | chr5.1:54879543-54879562 | None:intergenic | 35.0% | |
GATTGGATTCAATGGAAGAA+GGG | - | chr5.1:54877656-54877675 | MS.gene57025:intron | 35.0% | |
GTGAATTGCATGAAGTAAAG+AGG | - | chr5.1:54878693-54878712 | MS.gene57025:CDS | 35.0% | |
GTTAATGGGATTGGATTCAA+TGG | - | chr5.1:54877648-54877667 | MS.gene57025:intron | 35.0% | |
TCAAGCAAATGAAAAGCTTG+TGG | + | chr5.1:54877739-54877758 | None:intergenic | 35.0% | |
TCTCTTTCTCTGTAATCACT+TGG | - | chr5.1:54878931-54878950 | MS.gene57025:CDS | 35.0% | |
TTCAGGATTATTTATCCTGC+AGG | - | chr5.1:54879926-54879945 | MS.gene57025:CDS | 35.0% | |
TTGAAAATTCTCCTTCGACT+TGG | - | chr5.1:54879812-54879831 | MS.gene57025:CDS | 35.0% | |
TTGCAATGTGTAAGTGAACT+TGG | + | chr5.1:54877700-54877719 | None:intergenic | 35.0% | |
! | GATTTTGAGCATGATGTTTC+TGG | - | chr5.1:54878039-54878058 | MS.gene57025:intron | 35.0% |
!! | CAAGCTAGTTGATGATGAAT+TGG | - | chr5.1:54878661-54878680 | MS.gene57025:CDS | 35.0% |
!! | CTAGTTGATGATGAATTGGT+TGG | - | chr5.1:54878665-54878684 | MS.gene57025:CDS | 35.0% |
!! | TTGGTGTTTAGCTTTGAAAG+TGG | - | chr5.1:54877772-54877791 | MS.gene57025:intron | 35.0% |
!!! | CTTCAGTTTTTTCGACACAA+GGG | + | chr5.1:54879585-54879604 | None:intergenic | 35.0% |
!!! | TTCAGTTTTTTCGACACAAG+GGG | + | chr5.1:54879584-54879603 | None:intergenic | 35.0% |
AATTGGCACATGGTGCAAAT+AGG | - | chr5.1:54879200-54879219 | MS.gene57025:intron | 40.0% | |
AGTTGCAAGGTTAATGGGAT+TGG | - | chr5.1:54877639-54877658 | MS.gene57025:intron | 40.0% | |
GAGTTGAAGCTGGAATAGTA+AGG | - | chr5.1:54879834-54879853 | MS.gene57025:CDS | 40.0% | |
GGATTGGATTCAATGGAAGA+AGG | - | chr5.1:54877655-54877674 | MS.gene57025:intron | 40.0% | |
GGTGTAGTTGCAAGGTTAAT+GGG | - | chr5.1:54877634-54877653 | MS.gene57025:intron | 40.0% | |
TGGTGTAGTTGCAAGGTTAA+TGG | - | chr5.1:54877633-54877652 | MS.gene57025:intron | 40.0% | |
! | GTGTGGTAGTTCTTTTCAGA+TGG | - | chr5.1:54879757-54879776 | MS.gene57025:CDS | 40.0% |
!! | GTGTTTAGCTTTGAAAGTGG+AGG | - | chr5.1:54877775-54877794 | MS.gene57025:intron | 40.0% |
!!! | GCTTCAGTTTTTTCGACACA+AGG | + | chr5.1:54879586-54879605 | None:intergenic | 40.0% |
AGCTCAAAAACTGTTGCTGC+AGG | - | chr5.1:54877487-54877506 | MS.gene57025:intron | 45.0% | |
CTTCTTCTGGTGTAGTTGCA+AGG | - | chr5.1:54877626-54877645 | MS.gene57025:intron | 45.0% | |
GAGGGGAAAAACTTCATAGG+TGG | - | chr5.1:54879678-54879697 | MS.gene57025:CDS | 45.0% | |
GCTCAAAAACTGTTGCTGCA+GGG | - | chr5.1:54877488-54877507 | MS.gene57025:intron | 45.0% | |
TGATCTTGAAAGCTTCCTGC+AGG | + | chr5.1:54879944-54879963 | None:intergenic | 45.0% | |
!! | AGCTGGTCATTTTCAAGCAC+TGG | + | chr5.1:54878503-54878522 | None:intergenic | 45.0% |
!! | GAGCATGATGTTTCTGGAAC+AGG | - | chr5.1:54878045-54878064 | MS.gene57025:intron | 45.0% |
CAGCTTCAACTCCAAGTCGA+AGG | + | chr5.1:54879826-54879845 | None:intergenic | 50.0% | |
TGTGTGTGTGTGTGTGTGTG+TGG | - | chr5.1:54879347-54879366 | MS.gene57025:CDS | 50.0% | |
!! | CTTCGACTTGGAGTTGAAGC+TGG | - | chr5.1:54879824-54879843 | MS.gene57025:CDS | 50.0% |
ACTTCTTCGTGAGCTGCTGG+TGG | - | chr5.1:54879784-54879803 | MS.gene57025:CDS | 55.0% | |
GACACTTCTTCGTGAGCTGC+TGG | - | chr5.1:54879781-54879800 | MS.gene57025:CDS | 55.0% | |
TCTCAGATCCGCCCCTGCAA+GGG | - | chr5.1:54879557-54879576 | MS.gene57025:CDS | 60.0% | |
ACACAAGGGGCCCCTTGCAG+GGG | + | chr5.1:54879571-54879590 | None:intergenic | 65.0% | |
CTCAGATCCGCCCCTGCAAG+GGG | - | chr5.1:54879558-54879577 | MS.gene57025:CDS | 65.0% | |
GACACAAGGGGCCCCTTGCA+GGG | + | chr5.1:54879572-54879591 | None:intergenic | 65.0% | |
GTCTCAGATCCGCCCCTGCA+AGG | - | chr5.1:54879556-54879575 | MS.gene57025:CDS | 65.0% | |
! | TGAAAGTGTGCGCGCGCGTG+CGG | - | chr5.1:54879386-54879405 | MS.gene57025:CDS | 65.0% |
CGACACAAGGGGCCCCTTGC+AGG | + | chr5.1:54879573-54879592 | None:intergenic | 70.0% | |
CAAGGGGCCCCTTGCAGGGG+CGG | + | chr5.1:54879568-54879587 | None:intergenic | 75.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr5.1 | gene | 54877412 | 54880001 | 54877412 | ID=MS.gene57025 |
chr5.1 | mRNA | 54877412 | 54880001 | 54877412 | ID=MS.gene57025.t1;Parent=MS.gene57025 |
chr5.1 | exon | 54879476 | 54880001 | 54879476 | ID=MS.gene57025.t1.exon1;Parent=MS.gene57025.t1 |
chr5.1 | CDS | 54879476 | 54880001 | 54879476 | ID=cds.MS.gene57025.t1;Parent=MS.gene57025.t1 |
chr5.1 | exon | 54879347 | 54879427 | 54879347 | ID=MS.gene57025.t1.exon2;Parent=MS.gene57025.t1 |
chr5.1 | CDS | 54879347 | 54879427 | 54879347 | ID=cds.MS.gene57025.t1;Parent=MS.gene57025.t1 |
chr5.1 | exon | 54878614 | 54878960 | 54878614 | ID=MS.gene57025.t1.exon3;Parent=MS.gene57025.t1 |
chr5.1 | CDS | 54878614 | 54878960 | 54878614 | ID=cds.MS.gene57025.t1;Parent=MS.gene57025.t1 |
chr5.1 | exon | 54877563 | 54877637 | 54877563 | ID=MS.gene57025.t1.exon4;Parent=MS.gene57025.t1 |
chr5.1 | CDS | 54877563 | 54877637 | 54877563 | ID=cds.MS.gene57025.t1;Parent=MS.gene57025.t1 |
chr5.1 | exon | 54877412 | 54877465 | 54877412 | ID=MS.gene57025.t1.exon5;Parent=MS.gene57025.t1 |
chr5.1 | CDS | 54877412 | 54877465 | 54877412 | ID=cds.MS.gene57025.t1;Parent=MS.gene57025.t1 |
Gene Sequence |
Protein sequence |