Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene57056.t1 | XP_003615687.1 | 94.9 | 702 | 34 | 1 | 1 | 700 | 390 | 1091 | 0.00E+00 | 1322 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene57056.t1 | Q9LML2 | 31.9 | 711 | 339 | 18 | 1 | 700 | 401 | 977 | 1.1e-79 | 299.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene57056.t1 | G7JZH6 | 94.9 | 702 | 34 | 1 | 1 | 700 | 390 | 1091 | 0.0e+00 | 1322.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049435 | MS.gene57056 | 0.819523 | 1.11E-52 | -1.69E-46 |
| MS.gene051800 | MS.gene57056 | 0.816049 | 6.76E-52 | -1.69E-46 |
| MS.gene052190 | MS.gene57056 | 0.802525 | 5.38E-49 | -1.69E-46 |
| MS.gene052333 | MS.gene57056 | 0.800608 | 1.33E-48 | -1.69E-46 |
| MS.gene053166 | MS.gene57056 | 0.809928 | 1.48E-50 | -1.69E-46 |
| MS.gene055358 | MS.gene57056 | 0.822028 | 2.95E-53 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene57056.t1 | MTR_5g071060 | 94.872 | 702 | 34 | 1 | 1 | 700 | 390 | 1091 | 0.0 | 1373 |
| MS.gene57056.t1 | MTR_5g071060 | 90.598 | 702 | 31 | 2 | 1 | 700 | 390 | 1058 | 0.0 | 1294 |
| MS.gene57056.t1 | MTR_3g464150 | 53.547 | 719 | 272 | 16 | 1 | 700 | 404 | 1079 | 0.0 | 687 |
| MS.gene57056.t1 | MTR_3g070850 | 30.170 | 706 | 436 | 15 | 1 | 680 | 391 | 1065 | 1.03e-74 | 261 |
| MS.gene57056.t1 | MTR_4g129230 | 25.303 | 660 | 351 | 19 | 29 | 669 | 453 | 989 | 1.38e-37 | 151 |
| MS.gene57056.t1 | MTR_7g056197 | 33.730 | 252 | 141 | 4 | 198 | 442 | 337 | 569 | 5.61e-26 | 113 |
| MS.gene57056.t1 | MTR_4g127290 | 28.159 | 277 | 145 | 10 | 294 | 563 | 449 | 678 | 7.02e-13 | 72.8 |
| MS.gene57056.t1 | MTR_3g461000 | 25.795 | 283 | 160 | 11 | 276 | 548 | 444 | 686 | 1.75e-11 | 68.2 |
| MS.gene57056.t1 | MTR_1g057150 | 30.058 | 173 | 115 | 3 | 288 | 456 | 561 | 731 | 5.33e-11 | 66.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene57056.t1 | AT2G29970 | 33.986 | 715 | 355 | 24 | 1 | 700 | 389 | 1001 | 1.16e-90 | 304 |
| MS.gene57056.t1 | AT1G07200 | 32.489 | 711 | 335 | 20 | 1 | 700 | 401 | 977 | 2.40e-89 | 300 |
| MS.gene57056.t1 | AT1G07200 | 33.797 | 503 | 238 | 13 | 204 | 700 | 7 | 420 | 3.10e-66 | 224 |
| MS.gene57056.t1 | AT2G40130 | 31.436 | 404 | 232 | 14 | 289 | 687 | 534 | 897 | 3.31e-45 | 174 |
| MS.gene57056.t1 | AT2G40130 | 31.436 | 404 | 232 | 14 | 289 | 687 | 537 | 900 | 3.63e-45 | 174 |
| MS.gene57056.t1 | AT5G57710 | 26.106 | 678 | 329 | 24 | 16 | 656 | 400 | 942 | 4.83e-37 | 149 |
| MS.gene57056.t1 | AT4G30350 | 26.933 | 401 | 221 | 12 | 284 | 677 | 565 | 900 | 3.38e-33 | 137 |
| MS.gene57056.t1 | AT3G52490 | 27.368 | 190 | 119 | 4 | 277 | 456 | 562 | 742 | 1.24e-13 | 75.1 |
Find 0 sgRNAs with CRISPR-Local
Find 200 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATCTACTTCAATAATTTAA+GGG | + | 37958:26076-26095 | MS.gene57056:intron | 15.0% |
| !! | AGTAATTATAGTCATTTATT+TGG | + | 37958:26179-26198 | MS.gene57056:intron | 15.0% |
| !! | TAATCTACTTCAATAATTTA+AGG | + | 37958:26075-26094 | MS.gene57056:intron | 15.0% |
| !!! | TTGATTCTAAAATCAATAAT+TGG | - | 37958:26267-26286 | MS.gene57056:intergenic | 15.0% |
| !! | AAAACCTTCAATCAATAAAA+AGG | + | 37958:26350-26369 | MS.gene57056:intron | 20.0% |
| !! | AAACCTTCAATCAATAAAAA+GGG | + | 37958:26351-26370 | MS.gene57056:intron | 20.0% |
| !! | ATACAATTTGAAAAGACATT+TGG | + | 37958:28414-28433 | MS.gene57056:CDS | 20.0% |
| !! | TGTTAACCTATAAAATGATT+TGG | + | 37958:26719-26738 | MS.gene57056:intron | 20.0% |
| !!! | AGAAACATTATGCTTTTATT+TGG | - | 37958:26405-26424 | MS.gene57056:intergenic | 20.0% |
| !!! | TAATAAACTTCTCTTTGAAA+AGG | + | 37958:27453-27472 | MS.gene57056:CDS | 20.0% |
| !!! | TATGTTATGACTTGTTTATA+AGG | + | 37958:27737-27756 | MS.gene57056:CDS | 20.0% |
| !!! | TCTAGCTTTAAATTTTAGAA+AGG | - | 37958:26538-26557 | MS.gene57056:intergenic | 20.0% |
| ! | AAACATGTGCTATCAAATAA+TGG | + | 37958:26500-26519 | MS.gene57056:intron | 25.0% |
| ! | AAGCTTGAATGATAAGATAT+TGG | + | 37958:26835-26854 | MS.gene57056:CDS | 25.0% |
| ! | ACTCAAGAAACAAAATCTTA+CGG | - | 37958:26768-26787 | MS.gene57056:intergenic | 25.0% |
| ! | AGCTTGAATGATAAGATATT+GGG | + | 37958:26836-26855 | MS.gene57056:CDS | 25.0% |
| ! | CAAATTACTTTAACCAGTAT+AGG | - | 37958:26120-26139 | MS.gene57056:intergenic | 25.0% |
| ! | CCATTACAAAATCAATTTCA+TGG | - | 37958:28284-28303 | MS.gene57056:intergenic | 25.0% |
| ! | GTCATTTATTTGGAAATCAA+TGG | + | 37958:26189-26208 | MS.gene57056:intron | 25.0% |
| ! | TATTGGGATTTCAAAAGAAA+TGG | + | 37958:26852-26871 | MS.gene57056:CDS | 25.0% |
| ! | TCAACAAAAGAATATTCACA+GGG | - | 37958:26442-26461 | MS.gene57056:intergenic | 25.0% |
| ! | TGGAAAAAAGAAAATTGCTT+CGG | + | 37958:27606-27625 | MS.gene57056:CDS | 25.0% |
| !! | AAGGTTTTTGTTACCTTATT+TGG | - | 37958:26338-26357 | MS.gene57056:intergenic | 25.0% |
| !! | AGAACTCCAAATCATTTTAT+AGG | - | 37958:26728-26747 | MS.gene57056:intergenic | 25.0% |
| !! | AGACAAGAATATCTAAGATT+TGG | - | 37958:25989-26008 | MS.gene57056:intergenic | 25.0% |
| !! | AGTCATAACATAATGACTTT+TGG | - | 37958:27729-27748 | MS.gene57056:intergenic | 25.0% |
| !! | ATTTGTACTAAAGCTTCTTT+TGG | - | 37958:28073-28092 | MS.gene57056:intergenic | 25.0% |
| !! | CTATACTGGTTAAAGTAATT+TGG | + | 37958:26118-26137 | MS.gene57056:intron | 25.0% |
| !! | TAATTGCATTTGACATCTTT+TGG | - | 37958:28025-28044 | MS.gene57056:intergenic | 25.0% |
| !! | TTTCTTTTACTCATGAATGA+TGG | - | 37958:28129-28148 | MS.gene57056:intergenic | 25.0% |
| !!! | AACTTTTTTGCTATCAGTAT+TGG | + | 37958:26635-26654 | MS.gene57056:intron | 25.0% |
| !!! | ACTTTTTTGCTATCAGTATT+GGG | + | 37958:26636-26655 | MS.gene57056:intron | 25.0% |
| !!! | CCATGAAATTGATTTTGTAA+TGG | + | 37958:28281-28300 | MS.gene57056:CDS | 25.0% |
| !!! | TACATTTTCTAGAAAGACAA+CGG | - | 37958:27812-27831 | MS.gene57056:intergenic | 25.0% |
| !!! | TTCTTTTTTCCAATTCTATC+TGG | - | 37958:27598-27617 | MS.gene57056:intergenic | 25.0% |
| AAGTTTGCCTTGGTTTAAAA+AGG | + | 37958:25908-25927 | MS.gene57056:CDS | 30.0% | |
| AATACTAGTGACTTCAAAGA+GGG | + | 37958:28156-28175 | MS.gene57056:CDS | 30.0% | |
| AATATTGGTCACTATACTAG+TGG | - | 37958:26576-26595 | MS.gene57056:intergenic | 30.0% | |
| ATATGCTAGATTTCCTATAC+TGG | + | 37958:26104-26123 | MS.gene57056:intron | 30.0% | |
| CAACATATTTAGTTACAGTG+TGG | - | 37958:28581-28600 | MS.gene57056:intergenic | 30.0% | |
| CGATAAAATGGATGAAAAAG+TGG | + | 37958:28335-28354 | MS.gene57056:CDS | 30.0% | |
| CTCAACAAAAGAATATTCAC+AGG | - | 37958:26443-26462 | MS.gene57056:intergenic | 30.0% | |
| GGTATAACCAAAACGAATAT+TGG | - | 37958:26591-26610 | MS.gene57056:intergenic | 30.0% | |
| GTTTAAAAAGGTTGTTGATG+TGG | + | 37958:25920-25939 | MS.gene57056:CDS | 30.0% | |
| GTTTATAAGGAAAACAGTTG+TGG | + | 37958:27750-27769 | MS.gene57056:CDS | 30.0% | |
| TAAAGTGACTTCTCTCTTTA+GGG | - | 37958:26147-26166 | MS.gene57056:intergenic | 30.0% | |
| TAATACTAGTGACTTCAAAG+AGG | + | 37958:28155-28174 | MS.gene57056:CDS | 30.0% | |
| TGTCAAATGCAATTACTACT+TGG | + | 37958:28030-28049 | MS.gene57056:CDS | 30.0% | |
| TTAAAGTGAATGAGTCACTT+AGG | - | 37958:26310-26329 | MS.gene57056:intergenic | 30.0% | |
| TTATAACTCTTAACATCTGC+AGG | + | 37958:26796-26815 | MS.gene57056:intron | 30.0% | |
| ! | AAACTTCTCTTTGAAAAGGT+TGG | + | 37958:27457-27476 | MS.gene57056:CDS | 30.0% |
| ! | ATAGTGACCAATATTCGTTT+TGG | + | 37958:26581-26600 | MS.gene57056:intron | 30.0% |
| ! | ATATTCTTTTGTTGAGCCTA+TGG | + | 37958:26447-26466 | MS.gene57056:intron | 30.0% |
| ! | CACTTTAAAGAAGCCAAATA+AGG | + | 37958:26322-26341 | MS.gene57056:intron | 30.0% |
| ! | TATTCTTTTGTTGAGCCTAT+GGG | + | 37958:26448-26467 | MS.gene57056:intron | 30.0% |
| ! | TCAACAACCTTTTTAAACCA+AGG | - | 37958:25918-25937 | MS.gene57056:intergenic | 30.0% |
| !! | GTAGGTGATAAATGTTTTGA+TGG | - | 37958:27046-27065 | MS.gene57056:intergenic | 30.0% |
| !! | TCAAATAATGGACATGGATT+AGG | + | 37958:26512-26531 | MS.gene57056:intron | 30.0% |
| !! | TCTTGAAATTCTGAAGTATC+TGG | - | 37958:27286-27305 | MS.gene57056:intergenic | 30.0% |
| !! | TGTAGATAAAGCTGATTTTC+TGG | + | 37958:27828-27847 | MS.gene57056:CDS | 30.0% |
| AACCGTAAAACTTCAAGTGA+TGG | - | 37958:26920-26939 | MS.gene57056:intergenic | 35.0% | |
| ACCGTAAAACTTCAAGTGAT+GGG | - | 37958:26919-26938 | MS.gene57056:intergenic | 35.0% | |
| AGGCATATTTAAATCCAGAC+AGG | - | 37958:28226-28245 | MS.gene57056:intergenic | 35.0% | |
| ATTACTCAACAAGTTTGCCT+TGG | + | 37958:25898-25917 | MS.gene57056:CDS | 35.0% | |
| ATTCTTGTCTTGTGCATACT+TGG | + | 37958:25999-26018 | MS.gene57056:intron | 35.0% | |
| ATTTATGAAGGGACAGAGTT+CGG | - | 37958:27513-27532 | MS.gene57056:intergenic | 35.0% | |
| CCTTCAATCAATAAAAAGGG+TGG | + | 37958:26354-26373 | MS.gene57056:intron | 35.0% | |
| CTAAAGTGACTTCTCTCTTT+AGG | - | 37958:26148-26167 | MS.gene57056:intergenic | 35.0% | |
| CTTGTTGAGTAATTTGATGC+CGG | - | 37958:25891-25910 | MS.gene57056:intergenic | 35.0% | |
| GATGCATTTGTAGAGCTAAT+GGG | - | 37958:25792-25811 | MS.gene57056:intergenic | 35.0% | |
| GGAAATTGATTACGAGGTTA+TGG | + | 37958:28452-28471 | MS.gene57056:CDS | 35.0% | |
| GGCAACAAAATTTGATTCAG+TGG | + | 37958:27417-27436 | MS.gene57056:CDS | 35.0% | |
| GTACAAATGTCAAGATTGTG+CGG | + | 37958:28085-28104 | MS.gene57056:CDS | 35.0% | |
| GTAGAAAAGAATCCACCAAA+TGG | - | 37958:25750-25769 | MS.gene57056:intergenic | 35.0% | |
| TACACATAATGTGTGCAACA+TGG | + | 37958:26034-26053 | MS.gene57056:intron | 35.0% | |
| TAGTGACTTCTGCGATAAAA+TGG | + | 37958:28323-28342 | MS.gene57056:CDS | 35.0% | |
| TCAGCAACTGCAGATTTATA+TGG | - | 37958:26612-26631 | MS.gene57056:intergenic | 35.0% | |
| TCAGTTGGAAATTGATTACG+AGG | + | 37958:28446-28465 | MS.gene57056:CDS | 35.0% | |
| TGATGCATTTGTAGAGCTAA+TGG | - | 37958:25793-25812 | MS.gene57056:intergenic | 35.0% | |
| TGTTGAGTCTCTGTAACTTT+CGG | - | 37958:27118-27137 | MS.gene57056:intergenic | 35.0% | |
| TTAAATATGCCTCTAGACGA+GGG | + | 37958:28234-28253 | MS.gene57056:CDS | 35.0% | |
| TTTAAATATGCCTCTAGACG+AGG | + | 37958:28233-28252 | MS.gene57056:CDS | 35.0% | |
| TTTGATCATTGTAAGCCCAT+AGG | - | 37958:26466-26485 | MS.gene57056:intergenic | 35.0% | |
| TTTGTAGAAGAACCTGATCT+TGG | + | 37958:28627-28646 | MS.gene57056:CDS | 35.0% | |
| ! | AAAGTACCATGCAACTCTTT+AGG | - | 37958:27022-27041 | MS.gene57056:intergenic | 35.0% |
| ! | ATTTGGTTCAGAGTTTCAGT+TGG | + | 37958:28431-28450 | MS.gene57056:CDS | 35.0% |
| ! | GTTTTCCAGTACACTCATAT+TGG | - | 37958:27182-27201 | MS.gene57056:intergenic | 35.0% |
| ! | TCACTTGAAGTTTTACGGTT+TGG | + | 37958:26920-26939 | MS.gene57056:CDS | 35.0% |
| ! | TCCCATCACTTGAAGTTTTA+CGG | + | 37958:26915-26934 | MS.gene57056:CDS | 35.0% |
| !! | CCACCCTTTTTATTGATTGA+AGG | - | 37958:26357-26376 | MS.gene57056:intergenic | 35.0% |
| !! | GTGCTATCAAATAATGGACA+TGG | + | 37958:26506-26525 | MS.gene57056:intron | 35.0% |
| !! | TACAGAAAGCATCATCTCTT+TGG | + | 37958:27654-27673 | MS.gene57056:CDS | 35.0% |
| !!! | TTTGACATCTTTTGGCTTCA+AGG | - | 37958:28017-28036 | MS.gene57056:intergenic | 35.0% |
| AAAATGACATGACGACTCCT+TGG | + | 37958:27137-27156 | MS.gene57056:CDS | 40.0% | |
| AAGTGAATGAGTCACTTAGG+AGG | - | 37958:26307-26326 | MS.gene57056:intergenic | 40.0% | |
| AATCCTAAATCTGTGGTCAC+AGG | - | 37958:27226-27245 | MS.gene57056:intergenic | 40.0% | |
| AATCTGTGGTCACAGGAATT+AGG | - | 37958:27219-27238 | MS.gene57056:intergenic | 40.0% | |
| ACATAATGTGTGCAACATGG+TGG | + | 37958:26037-26056 | MS.gene57056:intron | 40.0% | |
| ACTACTTGGAGATACATCTG+AGG | + | 37958:28044-28063 | MS.gene57056:CDS | 40.0% | |
| ACTCTGTCCCTTCATAAATC+CGG | + | 37958:27514-27533 | MS.gene57056:CDS | 40.0% | |
| AGAAAAATGCAGTGGAGGAT+TGG | + | 37958:28508-28527 | MS.gene57056:CDS | 40.0% | |
| AGAAGTTGCTGATGCTTTGA+AGG | + | 37958:25851-25870 | MS.gene57056:CDS | 40.0% | |
| AGACAAGAAAAATGCAGTGG+AGG | + | 37958:28503-28522 | MS.gene57056:CDS | 40.0% | |
| AGCAAGCAAGATGCAAAAAC+AGG | + | 37958:28182-28201 | MS.gene57056:CDS | 40.0% | |
| AGCAGACAAGAAAAATGCAG+TGG | + | 37958:28500-28519 | MS.gene57056:CDS | 40.0% | |
| AGCATCATCTCTTTGGATCT+CGG | + | 37958:27661-27680 | MS.gene57056:CDS | 40.0% | |
| AGTGAATGAGTCACTTAGGA+GGG | - | 37958:26306-26325 | MS.gene57056:intergenic | 40.0% | |
| ATAATGTGTGCAACATGGTG+GGG | + | 37958:26039-26058 | MS.gene57056:intron | 40.0% | |
| ATCTGTGGTCACAGGAATTA+GGG | - | 37958:27218-27237 | MS.gene57056:intergenic | 40.0% | |
| ATGCAACTCTTTAGGCATGT+AGG | - | 37958:27014-27033 | MS.gene57056:intergenic | 40.0% | |
| ATTCCTGTGACCACAGATTT+AGG | + | 37958:27220-27239 | MS.gene57056:CDS | 40.0% | |
| ATTCGAAAATCGAGTTCGGT+GGG | - | 37958:27705-27724 | MS.gene57056:intergenic | 40.0% | |
| CATAATGTGTGCAACATGGT+GGG | + | 37958:26038-26057 | MS.gene57056:intron | 40.0% | |
| CTAACTGTACCAGTATGTAC+TGG | - | 37958:27070-27089 | MS.gene57056:intergenic | 40.0% | |
| GAAAAATGCAGTGGAGGATT+GGG | + | 37958:28509-28528 | MS.gene57056:CDS | 40.0% | |
| GAATCCACCAAATGGAACAA+AGG | - | 37958:25742-25761 | MS.gene57056:intergenic | 40.0% | |
| GCAAGCGCATCAAAATTGAA+TGG | - | 37958:28369-28388 | MS.gene57056:intergenic | 40.0% | |
| GCACTTGCAGAGACTATATT+TGG | + | 37958:27628-27647 | MS.gene57056:CDS | 40.0% | |
| GTTGTTGATGTGGATACACA+TGG | + | 37958:25930-25949 | MS.gene57056:CDS | 40.0% | |
| TAATGGAAAACTCAGACTCC+TGG | + | 37958:28298-28317 | MS.gene57056:CDS | 40.0% | |
| TACATGCCTAAAGAGTTGCA+TGG | + | 37958:27013-27032 | MS.gene57056:CDS | 40.0% | |
| TATGGCCAATATGAGTGTAC+TGG | + | 37958:27174-27193 | MS.gene57056:CDS | 40.0% | |
| TCAAGTTAATGCTAGCTGGA+AGG | - | 37958:28659-28678 | MS.gene57056:intergenic | 40.0% | |
| TCATATTGGCCATACGTGAA+GGG | - | 37958:27168-27187 | MS.gene57056:intergenic | 40.0% | |
| TCGTCTGTCTGTAAAGGTAA+CGG | + | 37958:27946-27965 | MS.gene57056:CDS | 40.0% | |
| TCTTTAGGCATGTAGGAAGA+TGG | - | 37958:27007-27026 | MS.gene57056:intergenic | 40.0% | |
| TGGCATTCGAAAATCGAGTT+CGG | - | 37958:27709-27728 | MS.gene57056:intergenic | 40.0% | |
| TTATCCTCGTCTGTCTGTAA+AGG | + | 37958:27940-27959 | MS.gene57056:CDS | 40.0% | |
| TTCCAATTCTATCTGGTCCT+AGG | - | 37958:27591-27610 | MS.gene57056:intergenic | 40.0% | |
| TTCCTAGGACCAGATAGAAT+TGG | + | 37958:27586-27605 | MS.gene57056:CDS | 40.0% | |
| ! | ACAGTTGTGGACTATATTGC+TGG | + | 37958:27763-27782 | MS.gene57056:CDS | 40.0% |
| ! | AGGAAGATGGTCTAGAACAT+TGG | - | 37958:26994-27013 | MS.gene57056:intergenic | 40.0% |
| ! | AGTTGTGGACTATATTGCTG+GGG | + | 37958:27765-27784 | MS.gene57056:CDS | 40.0% |
| ! | CAGTTGTGGACTATATTGCT+GGG | + | 37958:27764-27783 | MS.gene57056:CDS | 40.0% |
| ! | CTAATGGGACTTTTGCTTTC+AGG | - | 37958:25777-25796 | MS.gene57056:intergenic | 40.0% |
| ! | GTGACCACAGATTTAGGATT+GGG | + | 37958:27226-27245 | MS.gene57056:CDS | 40.0% |
| ! | GTTGAAAGTGTACTTGGCAA+AGG | + | 37958:28531-28550 | MS.gene57056:CDS | 40.0% |
| ! | TGTGACCACAGATTTAGGAT+TGG | + | 37958:27225-27244 | MS.gene57056:CDS | 40.0% |
| ! | TTCTCTTTGAAAAGGTTGGC+TGG | + | 37958:27461-27480 | MS.gene57056:CDS | 40.0% |
| !! | GACATATGGTTTGCTTTCCT+AGG | + | 37958:27571-27590 | MS.gene57056:CDS | 40.0% |
| !! | GATTGGGTTGAAAGTGTACT+TGG | + | 37958:28525-28544 | MS.gene57056:CDS | 40.0% |
| !!! | GAAGTTTTACGGTTTGGTTC+AGG | + | 37958:26926-26945 | MS.gene57056:CDS | 40.0% |
| AATTTCCAGACTCACGTGGA+AGG | + | 37958:27887-27906 | MS.gene57056:CDS | 45.0% | |
| ATCGCAGAAGTCACTAAACC+AGG | - | 37958:28319-28338 | MS.gene57056:intergenic | 45.0% | |
| ATGGGGTCCTTTGTTCCATT+TGG | + | 37958:25732-25751 | MS.gene57056:CDS | 45.0% | |
| ATTTCCAGACTCACGTGGAA+GGG | + | 37958:27888-27907 | MS.gene57056:CDS | 45.0% | |
| CAAATGTCAAGATTGTGCGG+AGG | + | 37958:28088-28107 | MS.gene57056:CDS | 45.0% | |
| CATATTGGCCATACGTGAAG+GGG | - | 37958:27167-27186 | MS.gene57056:intergenic | 45.0% | |
| CATTCGAAAATCGAGTTCGG+TGG | - | 37958:27706-27725 | MS.gene57056:intergenic | 45.0% | |
| CCCTTCACCGGATTTATGAA+GGG | - | 37958:27524-27543 | MS.gene57056:intergenic | 45.0% | |
| CCCTTCATAAATCCGGTGAA+GGG | + | 37958:27521-27540 | MS.gene57056:CDS | 45.0% | |
| CGTTCCCAATCCTAAATCTG+TGG | - | 37958:27233-27252 | MS.gene57056:intergenic | 45.0% | |
| CTCATATTGGCCATACGTGA+AGG | - | 37958:27169-27188 | MS.gene57056:intergenic | 45.0% | |
| GAATCAGCTGAAGTAGACTC+TGG | - | 37958:27334-27353 | MS.gene57056:intergenic | 45.0% | |
| GGTAAATTTCCAGACTCACG+TGG | + | 37958:27883-27902 | MS.gene57056:CDS | 45.0% | |
| GTACCAGTATGTACTGGAGT+AGG | - | 37958:27064-27083 | MS.gene57056:intergenic | 45.0% | |
| GTCAACGTCTTCATCAAGCA+AGG | + | 37958:26885-26904 | MS.gene57056:CDS | 45.0% | |
| GTTACCTTTACAGACAGACG+AGG | - | 37958:27947-27966 | MS.gene57056:intergenic | 45.0% | |
| GTTGATGTGGATACACATGG+AGG | + | 37958:25933-25952 | MS.gene57056:CDS | 45.0% | |
| TAACGGCTCTTCTACTTTGG+TGG | + | 37958:27963-27982 | MS.gene57056:CDS | 45.0% | |
| TAATGTGTGCAACATGGTGG+GGG | + | 37958:26040-26059 | MS.gene57056:intron | 45.0% | |
| TAATTTGATGCCGGAGTAGC+AGG | - | 37958:25882-25901 | MS.gene57056:intergenic | 45.0% | |
| TACACATGGAGGACTTGATG+TGG | + | 37958:25944-25963 | MS.gene57056:CDS | 45.0% | |
| TCAAGATTGTGCGGAGGAAA+GGG | + | 37958:28094-28113 | MS.gene57056:CDS | 45.0% | |
| TCACCTACTCCAGTACATAC+TGG | + | 37958:27058-27077 | MS.gene57056:CDS | 45.0% | |
| TCCCTTCACCGGATTTATGA+AGG | - | 37958:27525-27544 | MS.gene57056:intergenic | 45.0% | |
| TCCCTTCATAAATCCGGTGA+AGG | + | 37958:27520-27539 | MS.gene57056:CDS | 45.0% | |
| TGCATGGTAGAGCAGACATA+TGG | + | 37958:27557-27576 | MS.gene57056:CDS | 45.0% | |
| TTGCTGCAGGCAATAAGAAG+AGG | + | 37958:27862-27881 | MS.gene57056:CDS | 45.0% | |
| ! | AGGTAACGGCTCTTCTACTT+TGG | + | 37958:27960-27979 | MS.gene57056:CDS | 45.0% |
| ! | ATGGGACTTTTGCTTTCAGG+AGG | - | 37958:25774-25793 | MS.gene57056:intergenic | 45.0% |
| ! | GCTGATTCTGTTGCTGTCAA+TGG | + | 37958:27346-27365 | MS.gene57056:CDS | 45.0% |
| ! | GTATCTGGCTTGTGAGCAAT+TGG | - | 37958:27271-27290 | MS.gene57056:intergenic | 45.0% |
| ! | TTGTTGCCCTGTTTGAAGCA+GGG | - | 37958:27405-27424 | MS.gene57056:intergenic | 45.0% |
| ! | TTTGTTGCCCTGTTTGAAGC+AGG | - | 37958:27406-27425 | MS.gene57056:intergenic | 45.0% |
| AGACGAGGGTGAAGAAGGTA+TGG | + | 37958:28248-28267 | MS.gene57056:CDS | 50.0% | |
| ATTTCCCTTCCACGTGAGTC+TGG | - | 37958:27895-27914 | MS.gene57056:intergenic | 50.0% | |
| CACAGATACTTGCAGCTGCT+TGG | + | 37958:28475-28494 | MS.gene57056:CDS | 50.0% | |
| CTCCTTCCCTGCTTCAAACA+GGG | + | 37958:27396-27415 | MS.gene57056:CDS | 50.0% | |
| GAAGGTAGATCCTGCTACTC+CGG | + | 37958:25869-25888 | MS.gene57056:CDS | 50.0% | |
| GGCTCTTCTACTTTGGTGGA+AGG | + | 37958:27967-27986 | MS.gene57056:CDS | 50.0% | |
| GGGTCCTTTGTTCCATTTGG+TGG | + | 37958:25735-25754 | MS.gene57056:CDS | 50.0% | |
| GTCAAGATTGTGCGGAGGAA+AGG | + | 37958:28093-28112 | MS.gene57056:CDS | 50.0% | |
| TGGAGGACTTGATGTGGCAA+AGG | + | 37958:25950-25969 | MS.gene57056:CDS | 50.0% | |
| TTGGATCTCGGCTTCCAAGA+CGG | + | 37958:27673-27692 | MS.gene57056:CDS | 50.0% | |
| ! | AAAGGTTGGCTGGCAGAATC+AGG | + | 37958:27471-27490 | MS.gene57056:CDS | 50.0% |
| ! | GGAAGGCATAGTCCAAGATC+AGG | - | 37958:28642-28661 | MS.gene57056:intergenic | 50.0% |
| CCTCCTTCCCTGCTTCAAAC+AGG | + | 37958:27395-27414 | MS.gene57056:CDS | 55.0% | |
| CCTCTAGACGAGGGTGAAGA+AGG | + | 37958:28243-28262 | MS.gene57056:CDS | 55.0% | |
| CCTTCTTCACCCTCGTCTAG+AGG | - | 37958:28246-28265 | MS.gene57056:intergenic | 55.0% | |
| CGAGACATCGATGTCCTGTC+TGG | + | 37958:28209-28228 | MS.gene57056:CDS | 55.0% | |
| GGGAAGAGCAGAGACTTGCA+TGG | + | 37958:27541-27560 | MS.gene57056:CDS | 55.0% | |
| GTCTCTGCTCTTCCCTTCAC+CGG | - | 37958:27536-27555 | MS.gene57056:intergenic | 55.0% | |
| TGGATCTCGGCTTCCAAGAC+GGG | + | 37958:27674-27693 | MS.gene57056:CDS | 55.0% | |
| ! | CCTGTTTGAAGCAGGGAAGG+AGG | - | 37958:27398-27417 | MS.gene57056:intergenic | 55.0% |
| ! | TGCCCTGTTTGAAGCAGGGA+AGG | - | 37958:27401-27420 | MS.gene57056:intergenic | 55.0% |
| !! | GGTGCAGAGTAGTTTGCTGC+AGG | + | 37958:27849-27868 | MS.gene57056:CDS | 55.0% |
| ATACGTGAAGGGGCGAGCCA+AGG | - | 37958:27157-27176 | MS.gene57056:intergenic | 60.0% | |
| TCGGTGGGTAAAGCCCGTCT+TGG | - | 37958:27690-27709 | MS.gene57056:intergenic | 60.0% | |
| ! | TTGGCTCGCCCCTTCACGTA+TGG | + | 37958:27156-27175 | MS.gene57056:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| 37958 | gene | 25732 | 28679 | 25732 | ID=MS.gene57056 |
| 37958 | mRNA | 25732 | 28679 | 25732 | ID=MS.gene57056.t1;Parent=MS.gene57056 |
| 37958 | exon | 25732 | 25971 | 25732 | ID=MS.gene57056.t1.exon1;Parent=MS.gene57056.t1 |
| 37958 | CDS | 25732 | 25971 | 25732 | ID=cds.MS.gene57056.t1;Parent=MS.gene57056.t1 |
| 37958 | exon | 26818 | 28679 | 26818 | ID=MS.gene57056.t1.exon2;Parent=MS.gene57056.t1 |
| 37958 | CDS | 26818 | 28679 | 26818 | ID=cds.MS.gene57056.t1;Parent=MS.gene57056.t1 |
| Gene Sequence |
| Protein sequence |
