Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene57309.t1 | XP_013446785.1 | 91.9 | 258 | 17 | 1 | 1 | 258 | 1 | 254 | 2.60E-128 | 468.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene57309.t1 | A0A072TTP9 | 91.9 | 258 | 17 | 1 | 1 | 258 | 1 | 254 | 1.9e-128 | 468.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049674 | MS.gene57309 | 0.803714 | 3.05E-49 | -1.69E-46 |
| MS.gene050359 | MS.gene57309 | 0.813121 | 3.01E-51 | -1.69E-46 |
| MS.gene052242 | MS.gene57309 | -0.802674 | 5.02E-49 | -1.69E-46 |
| MS.gene052307 | MS.gene57309 | 0.813399 | 2.61E-51 | -1.69E-46 |
| MS.gene052609 | MS.gene57309 | 0.817461 | 3.26E-52 | -1.69E-46 |
| MS.gene052932 | MS.gene57309 | 0.822211 | 2.67E-53 | -1.69E-46 |
| MS.gene053879 | MS.gene57309 | 0.811689 | 6.17E-51 | -1.69E-46 |
| MS.gene055313 | MS.gene57309 | 0.801477 | 8.84E-49 | -1.69E-46 |
| MS.gene059965 | MS.gene57309 | 0.813354 | 2.67E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene57309.t1 | MTR_8g090105 | 91.860 | 258 | 17 | 1 | 1 | 258 | 1 | 254 | 1.82e-174 | 483 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene57309.t1 | AT3G57360 | 46.087 | 230 | 114 | 5 | 34 | 261 | 21 | 242 | 1.48e-64 | 204 |
| MS.gene57309.t1 | AT3G02370 | 44.388 | 196 | 102 | 3 | 64 | 258 | 1 | 190 | 2.60e-53 | 173 |
| MS.gene57309.t1 | AT3G02370 | 44.388 | 196 | 102 | 3 | 64 | 258 | 1 | 190 | 2.60e-53 | 173 |
| MS.gene57309.t1 | AT3G02370 | 44.388 | 196 | 102 | 3 | 64 | 258 | 1 | 190 | 2.60e-53 | 173 |
| MS.gene57309.t1 | AT3G02370 | 44.848 | 165 | 85 | 2 | 64 | 227 | 1 | 160 | 4.32e-45 | 150 |
Find 66 sgRNAs with CRISPR-Local
Find 193 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CACAAACTGGATTGTGATTT+TGG | 0.090434 | 4.1:+10416070 | MS.gene57309:CDS |
| AAGTCTCTCGGCTACATAAT+TGG | 0.212462 | 4.1:+10414727 | MS.gene57309:CDS |
| CTCTTCATTCCATCTGGCTT+TGG | 0.237765 | 4.1:-10414204 | None:intergenic |
| GACAAGCACAGCAGAAAATT+TGG | 0.239630 | 4.1:-10414967 | None:intergenic |
| TTAACTTGGCAGGTATCTTA+TGG | 0.241091 | 4.1:+10414579 | MS.gene57309:intron |
| GAAATGTACGAAAAGGTTTC+TGG | 0.246659 | 4.1:+10414655 | MS.gene57309:CDS |
| CTTTCCATAAGTAAGTTATT+TGG | 0.268545 | 4.1:+10414862 | MS.gene57309:CDS |
| CTTTGCCCAAATCGCAATTC+AGG | 0.274999 | 4.1:+10413415 | MS.gene57309:CDS |
| CTCACCAAATAACTTACTTA+TGG | 0.296788 | 4.1:-10414866 | None:intergenic |
| TTTGACCTGAATTGCGATTT+GGG | 0.324555 | 4.1:-10413420 | None:intergenic |
| TCCCATCTCTTCATTCCATC+TGG | 0.337819 | 4.1:-10414210 | None:intergenic |
| GCTTCAATTTCTTCTCTAGA+AGG | 0.386301 | 4.1:-10415783 | None:intergenic |
| ATGATAACCTGCGCTACAAA+TGG | 0.392220 | 4.1:+10416037 | MS.gene57309:CDS |
| GGAAGATAAATATCAAAATC+TGG | 0.393325 | 4.1:-10414910 | None:intergenic |
| ACTTATGGAAAGCTCGACTT+TGG | 0.418825 | 4.1:-10414851 | None:intergenic |
| AGTCTCTCGGCTACATAATT+GGG | 0.429657 | 4.1:+10414728 | MS.gene57309:CDS |
| AGCAGAAAATTTGGATCACC+TGG | 0.456168 | 4.1:-10414958 | None:intergenic |
| TTCGCTGTCTACGAGATGTA+AGG | 0.463920 | 4.1:-10414611 | None:intergenic |
| CAGGAAGACCGGATGTTGTT+GGG | 0.466673 | 4.1:+10414678 | MS.gene57309:CDS |
| GGGAGCTGTTCGAGGCCTAC+AGG | 0.479326 | 4.1:+10414698 | MS.gene57309:CDS |
| GAACAGCTCCCAACAACATC+CGG | 0.481581 | 4.1:-10414686 | None:intergenic |
| ATGTTGTTGGGAGCTGTTCG+AGG | 0.483585 | 4.1:+10414690 | MS.gene57309:CDS |
| GCAGAGGTTATTGAGAAGAA+TGG | 0.485595 | 4.1:+10414236 | MS.gene57309:CDS |
| TGGGCTCAGTGATCACAAAC+TGG | 0.485634 | 4.1:+10416057 | MS.gene57309:CDS |
| GCAGGAAGACCGGATGTTGT+TGG | 0.493458 | 4.1:+10414677 | MS.gene57309:CDS |
| TATAATAGAAATGTACGAAA+AGG | 0.493873 | 4.1:+10414648 | MS.gene57309:CDS |
| AGCCAGATGGAATGAAGAGA+TGG | 0.498558 | 4.1:+10414208 | MS.gene57309:CDS |
| AAGGTTTCTGGCAGGAAGAC+CGG | 0.499823 | 4.1:+10414667 | MS.gene57309:CDS |
| TTGGGCGGCATAATGTTGCT+TGG | 0.506016 | 4.1:+10414746 | MS.gene57309:CDS |
| TGAAGAGATGGGAATGGCAG+AGG | 0.522087 | 4.1:+10414220 | MS.gene57309:CDS |
| TGATAACCTGCGCTACAAAT+GGG | 0.525231 | 4.1:+10416038 | MS.gene57309:CDS |
| ACTGAGCCCATTTGTAGCGC+AGG | 0.527267 | 4.1:-10416044 | None:intergenic |
| ATTAATGGAAGGAAACAAGT+GGG | 0.544553 | 4.1:+10413284 | None:intergenic |
| GTGACCAGGCAGACTTTCAA+CGG | 0.557808 | 4.1:-10415831 | None:intergenic |
| AGGTTCAGAAAATCTTCTCC+AGG | 0.564329 | 4.1:+10414940 | MS.gene57309:CDS |
| GATTCCGTTGAAAGTCTGCC+TGG | 0.568623 | 4.1:+10415827 | MS.gene57309:CDS |
| TGACCCTTCCTTCTGTGACC+AGG | 0.571599 | 4.1:-10415845 | None:intergenic |
| TCTGCCTGGTCACAGAAGGA+AGG | 0.572718 | 4.1:+10415841 | MS.gene57309:CDS |
| ACAACATCACAATCACCTGC+AGG | 0.573998 | 4.1:-10416109 | None:intergenic |
| ATGGAATGAAGAGATGGGAA+TGG | 0.574705 | 4.1:+10414214 | MS.gene57309:CDS |
| GCCAGATGGAATGAAGAGAT+GGG | 0.580713 | 4.1:+10414209 | MS.gene57309:CDS |
| AAGCAAACAAATAGTAGACA+TGG | 0.583081 | 4.1:+10414825 | MS.gene57309:CDS |
| AAAGTCTGCCTGGTCACAGA+AGG | 0.586148 | 4.1:+10415837 | MS.gene57309:CDS |
| ACGTCAAATCCAAAGCCAGA+TGG | 0.589896 | 4.1:+10414195 | MS.gene57309:CDS |
| ATATTTATCTTCCAGACAGT+AGG | 0.589908 | 4.1:+10414920 | MS.gene57309:CDS |
| CTCTCGGCTACATAATTGGG+CGG | 0.591627 | 4.1:+10414731 | MS.gene57309:CDS |
| GGCAGGTATCTTATGGAACT+AGG | 0.591792 | 4.1:+10414586 | MS.gene57309:intron |
| TACAGGCACCTCAAGTCTCT+CGG | 0.595258 | 4.1:+10414715 | MS.gene57309:CDS |
| CAAAGCGATCACAAACCTGC+AGG | 0.600504 | 4.1:+10416094 | MS.gene57309:CDS |
| CTGCCTGGTCACAGAAGGAA+GGG | 0.602851 | 4.1:+10415842 | MS.gene57309:CDS |
| GATTAATGGAAGGAAACAAG+TGG | 0.610317 | 4.1:+10413283 | None:intergenic |
| TGTACGAAAAGGTTTCTGGC+AGG | 0.610565 | 4.1:+10414659 | MS.gene57309:CDS |
| TAGCAAGAAACTGAAGGCAA+TGG | 0.617206 | 4.1:+10416138 | MS.gene57309:CDS |
| AAAGAAAGCTGTGGAAGTTG+TGG | 0.630880 | 4.1:+10416012 | MS.gene57309:intron |
| AAGAATGAGATGTGAAGCGA+AGG | 0.634517 | 4.1:-10413395 | None:intergenic |
| CAAGATTTATACTTCAATCG+AGG | 0.638560 | 4.1:+10414295 | MS.gene57309:CDS |
| GCTCTTGAGAAACAATGTGT+GGG | 0.640117 | 4.1:+10415804 | MS.gene57309:CDS |
| AATAATGTGAAAGAAAGCTG+TGG | 0.640180 | 4.1:+10416003 | MS.gene57309:intron |
| CTCTTGAGAAACAATGTGTG+GGG | 0.646122 | 4.1:+10415805 | MS.gene57309:CDS |
| AGCAAACAAATAGTAGACAT+GGG | 0.646880 | 4.1:+10414826 | MS.gene57309:CDS |
| GAGAGACTTGAGGTGCCTGT+AGG | 0.647949 | 4.1:-10414713 | None:intergenic |
| TGAACATAGCAAGAAACTGA+AGG | 0.649845 | 4.1:+10416132 | MS.gene57309:CDS |
| TTATGTAGCCGAGAGACTTG+AGG | 0.655821 | 4.1:-10414723 | None:intergenic |
| TTAATGGAAGGAAACAAGTG+GGG | 0.680860 | 4.1:+10413285 | None:intergenic |
| AGCTCTTGAGAAACAATGTG+TGG | 0.694534 | 4.1:+10415803 | MS.gene57309:CDS |
| TCTACTGGAATAGTTCGTAG+TGG | 0.695795 | 4.1:+10414272 | MS.gene57309:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATTATTTATAGAAAACTA+TGG | - | chr4.1:10414414-10414433 | None:intergenic | 10.0% |
| !!! | TTAATCTAAAAACATATTTT+GGG | - | chr4.1:10415391-10415410 | None:intergenic | 10.0% |
| !! | AGAAACAAATTTAATACTTA+GGG | + | chr4.1:10415519-10415538 | MS.gene57309:intron | 15.0% |
| !! | AGTAAATGATTGTTAATAAA+CGG | + | chr4.1:10413780-10413799 | MS.gene57309:intron | 15.0% |
| !! | ATAAGATATATACAAAAACA+TGG | - | chr4.1:10414340-10414359 | None:intergenic | 15.0% |
| !!! | CTACATAGATTTTTTTTTAA+TGG | - | chr4.1:10415065-10415084 | None:intergenic | 15.0% |
| !!! | CTTAATCTAAAAACATATTT+TGG | - | chr4.1:10415392-10415411 | None:intergenic | 15.0% |
| !!! | TTAAGTTGTTTATAGAAAAA+TGG | - | chr4.1:10413448-10413467 | None:intergenic | 15.0% |
| !!! | TTTTGGAAAATCTATTAATT+TGG | + | chr4.1:10415729-10415748 | MS.gene57309:intron | 15.0% |
| !! | AAGAAACAAAGATAATTGTT+TGG | - | chr4.1:10415639-10415658 | None:intergenic | 20.0% |
| !! | AAGTATTTAAGCATACATTA+TGG | + | chr4.1:10415584-10415603 | MS.gene57309:intron | 20.0% |
| !! | ACAAATGATAAATTAATGTC+AGG | + | chr4.1:10413891-10413910 | MS.gene57309:intron | 20.0% |
| !! | AGAAACAAAGATAATTGTTT+GGG | - | chr4.1:10415638-10415657 | None:intergenic | 20.0% |
| !! | GAGAAACAAATTTAATACTT+AGG | + | chr4.1:10415518-10415537 | MS.gene57309:intron | 20.0% |
| !! | GTAAATGATTGTTAATAAAC+GGG | + | chr4.1:10413781-10413800 | MS.gene57309:intron | 20.0% |
| !! | TATAATAGAAATGTACGAAA+AGG | + | chr4.1:10414648-10414667 | MS.gene57309:CDS | 20.0% |
| !! | TCAAATACTACAAATTCAAT+CGG | - | chr4.1:10413604-10413623 | None:intergenic | 20.0% |
| !! | TCTGAGAAAAATTATCTTTA+AGG | - | chr4.1:10415430-10415449 | None:intergenic | 20.0% |
| !!! | CATTAATTTATCATTTGTTG+TGG | - | chr4.1:10413889-10413908 | None:intergenic | 20.0% |
| !!! | TGTTTGTGAAAATTTTAACT+TGG | + | chr4.1:10414565-10414584 | MS.gene57309:intron | 20.0% |
| ! | AATAAGCTGAAAATAGCTTA+TGG | + | chr4.1:10413948-10413967 | MS.gene57309:intron | 25.0% |
| ! | AATAGCTGATAAACTAACTT+AGG | + | chr4.1:10413533-10413552 | MS.gene57309:intron | 25.0% |
| ! | ATAATTGATATCAACTGTTC+AGG | - | chr4.1:10415910-10415929 | None:intergenic | 25.0% |
| ! | ATGATAGTAGAATAATCTGT+AGG | + | chr4.1:10415976-10415995 | MS.gene57309:intron | 25.0% |
| ! | ATTCATACTGATATGATTAG+AGG | - | chr4.1:10415008-10415027 | None:intergenic | 25.0% |
| ! | ATTTAATACTTAGGGTAAGA+AGG | + | chr4.1:10415527-10415546 | MS.gene57309:intron | 25.0% |
| ! | CAGTAGTAAGTAACTATTTA+CGG | - | chr4.1:10414105-10414124 | None:intergenic | 25.0% |
| ! | CTTTCCATAAGTAAGTTATT+TGG | + | chr4.1:10414862-10414881 | MS.gene57309:CDS | 25.0% |
| ! | GGAAGATAAATATCAAAATC+TGG | - | chr4.1:10414913-10414932 | None:intergenic | 25.0% |
| ! | TAATTGATATCAACTGTTCA+GGG | - | chr4.1:10415909-10415928 | None:intergenic | 25.0% |
| ! | TATACATATATGAGTCTGTT+TGG | - | chr4.1:10413858-10413877 | None:intergenic | 25.0% |
| ! | TGAAGCACATAAATTACAAT+AGG | - | chr4.1:10415467-10415486 | None:intergenic | 25.0% |
| ! | TTTAATACTTAGGGTAAGAA+GGG | + | chr4.1:10415528-10415547 | MS.gene57309:intron | 25.0% |
| ! | TTTATGCATGTAATCTGTTA+GGG | + | chr4.1:10415752-10415771 | MS.gene57309:intron | 25.0% |
| !! | GTAGTTATATTTTCTCTGTT+AGG | + | chr4.1:10415350-10415369 | MS.gene57309:intron | 25.0% |
| !! | TCTGACATTTAGATTTTAGA+AGG | + | chr4.1:10414362-10414381 | MS.gene57309:intron | 25.0% |
| !! | TTTTCTCTGTTAGGAATTTA+AGG | + | chr4.1:10415359-10415378 | MS.gene57309:intron | 25.0% |
| !!! | ACATTTAGATTTTAGAAGGA+GGG | + | chr4.1:10414366-10414385 | MS.gene57309:intron | 25.0% |
| !!! | GATTCAATGATGCATTTTTT+TGG | + | chr4.1:10414523-10414542 | MS.gene57309:intron | 25.0% |
| !!! | TTTTTTACATTTCATTCACC+AGG | + | chr4.1:10414171-10414190 | MS.gene57309:intron | 25.0% |
| AAGCAAACAAATAGTAGACA+TGG | + | chr4.1:10414825-10414844 | MS.gene57309:CDS | 30.0% | |
| AATAATGTGAAAGAAAGCTG+TGG | + | chr4.1:10416003-10416022 | MS.gene57309:intron | 30.0% | |
| ACAGCTTTCTTTCACATTAT+TGG | - | chr4.1:10416004-10416023 | None:intergenic | 30.0% | |
| ACCTGTTAAGTGTAAGAAAA+AGG | - | chr4.1:10415710-10415729 | None:intergenic | 30.0% | |
| AGACGATAAATAAGCCAAAT+AGG | + | chr4.1:10414501-10414520 | MS.gene57309:intron | 30.0% | |
| AGCAAACAAATAGTAGACAT+GGG | + | chr4.1:10414826-10414845 | MS.gene57309:CDS | 30.0% | |
| ATATTTATCTTCCAGACAGT+AGG | + | chr4.1:10414920-10414939 | MS.gene57309:CDS | 30.0% | |
| ATCATATTTATGCCTCTGTT+TGG | + | chr4.1:10413505-10413524 | MS.gene57309:intron | 30.0% | |
| ATGCATCATTGAATCCTATT+TGG | - | chr4.1:10414518-10414537 | None:intergenic | 30.0% | |
| CAAGATTTATACTTCAATCG+AGG | + | chr4.1:10414295-10414314 | MS.gene57309:CDS | 30.0% | |
| CCTGTTAAGTGTAAGAAAAA+GGG | - | chr4.1:10415709-10415728 | None:intergenic | 30.0% | |
| CTCACCAAATAACTTACTTA+TGG | - | chr4.1:10414869-10414888 | None:intergenic | 30.0% | |
| GTTTATGCATGTAATCTGTT+AGG | + | chr4.1:10415751-10415770 | MS.gene57309:intron | 30.0% | |
| TAAGTGTAAGAAAAAGGGAA+AGG | - | chr4.1:10415704-10415723 | None:intergenic | 30.0% | |
| TAGAAGTTCTCAAAAACAAG+TGG | + | chr4.1:10414783-10414802 | MS.gene57309:CDS | 30.0% | |
| TGAGAAGAATGGAAAAATGT+GGG | + | chr4.1:10414247-10414266 | MS.gene57309:CDS | 30.0% | |
| TTATGCATGTAATCTGTTAG+GGG | + | chr4.1:10415753-10415772 | MS.gene57309:intron | 30.0% | |
| TTCAAATAAGTCAGCCTATA+TGG | + | chr4.1:10414038-10414057 | MS.gene57309:intron | 30.0% | |
| TTCAAATCAACACTAAAGCA+GGG | - | chr4.1:10414144-10414163 | None:intergenic | 30.0% | |
| TTGAGAAGAATGGAAAAATG+TGG | + | chr4.1:10414246-10414265 | MS.gene57309:CDS | 30.0% | |
| TTTCAAATCAACACTAAAGC+AGG | - | chr4.1:10414145-10414164 | None:intergenic | 30.0% | |
| ! | AATTTTCATAAGCTATTCCG+AGG | + | chr4.1:10413915-10413934 | MS.gene57309:intron | 30.0% |
| ! | AGAGGCATAAATATGATAGA+GGG | - | chr4.1:10413502-10413521 | None:intergenic | 30.0% |
| ! | ATGTTGTTTATTGTGTTGTG+TGG | + | chr4.1:10415179-10415198 | MS.gene57309:intron | 30.0% |
| ! | CAAGAAATTGATAAGCGTTT+TGG | + | chr4.1:10415496-10415515 | MS.gene57309:intron | 30.0% |
| ! | CTGTTAGGAATTTAAGGTAA+TGG | + | chr4.1:10415365-10415384 | MS.gene57309:intron | 30.0% |
| ! | TATAGAAAACTATGGCCTTA+AGG | - | chr4.1:10414406-10414425 | None:intergenic | 30.0% |
| ! | TTCTTACACTTAACAGGTTT+TGG | + | chr4.1:10415712-10415731 | MS.gene57309:intron | 30.0% |
| !! | GACATTTAGATTTTAGAAGG+AGG | + | chr4.1:10414365-10414384 | MS.gene57309:intron | 30.0% |
| !!! | AATGATGCATTTTTTTGGCT+AGG | + | chr4.1:10414528-10414547 | MS.gene57309:intron | 30.0% |
| !!! | GTTAATAAACGGGTCTTTTT+TGG | + | chr4.1:10413791-10413810 | MS.gene57309:intron | 30.0% |
| !!! | TGTGAAAATTTTAACTTGGC+AGG | + | chr4.1:10414569-10414588 | MS.gene57309:intron | 30.0% |
| AAACAGAAACCTTTATGCAC+TGG | + | chr4.1:10415149-10415168 | MS.gene57309:intron | 35.0% | |
| AGAAAAAGGGAAAGGAAACT+TGG | - | chr4.1:10415696-10415715 | None:intergenic | 35.0% | |
| AGCTGATAAACTAACTTAGG+TGG | + | chr4.1:10413536-10413555 | MS.gene57309:intron | 35.0% | |
| ATTCCTATGAGTCATGTTCT+CGG | - | chr4.1:10415091-10415110 | None:intergenic | 35.0% | |
| CATGAGCTTATAGCTTATAG+TGG | - | chr4.1:10413760-10413779 | None:intergenic | 35.0% | |
| GAAATGTACGAAAAGGTTTC+TGG | + | chr4.1:10414655-10414674 | MS.gene57309:CDS | 35.0% | |
| GCATAAAGGTTTCTGTTTGT+GGG | - | chr4.1:10415147-10415166 | None:intergenic | 35.0% | |
| GCTTCAATTTCTTCTCTAGA+AGG | - | chr4.1:10415786-10415805 | None:intergenic | 35.0% | |
| TCAAATCAACACTAAAGCAG+GGG | - | chr4.1:10414143-10414162 | None:intergenic | 35.0% | |
| TCACTAGTAAGTCACCATAT+AGG | - | chr4.1:10414055-10414074 | None:intergenic | 35.0% | |
| TGAACATAGCAAGAAACTGA+AGG | + | chr4.1:10416132-10416151 | MS.gene57309:CDS | 35.0% | |
| TGCATAAAGGTTTCTGTTTG+TGG | - | chr4.1:10415148-10415167 | None:intergenic | 35.0% | |
| TTTGACCTGAATTGCGATTT+GGG | - | chr4.1:10413423-10413442 | None:intergenic | 35.0% | |
| ! | CACAAACTGGATTGTGATTT+TGG | + | chr4.1:10416070-10416089 | MS.gene57309:CDS | 35.0% |
| ! | CAGAGGCATAAATATGATAG+AGG | - | chr4.1:10413503-10413522 | None:intergenic | 35.0% |
| ! | CCCTTTTTCTTACACTTAAC+AGG | + | chr4.1:10415706-10415725 | MS.gene57309:intron | 35.0% |
| ! | TTAACTTGGCAGGTATCTTA+TGG | + | chr4.1:10414579-10414598 | MS.gene57309:intron | 35.0% |
| ! | TTTTGACCTGAATTGCGATT+TGG | - | chr4.1:10413424-10413443 | None:intergenic | 35.0% |
| !!! | AGCTATTTTTCACCAAACAG+AGG | - | chr4.1:10413520-10413539 | None:intergenic | 35.0% |
| AAAGAAAGCTGTGGAAGTTG+TGG | + | chr4.1:10416012-10416031 | MS.gene57309:intron | 40.0% | |
| AAGAATGAGATGTGAAGCGA+AGG | - | chr4.1:10413398-10413417 | None:intergenic | 40.0% | |
| AAGTCTCTCGGCTACATAAT+TGG | + | chr4.1:10414727-10414746 | MS.gene57309:CDS | 40.0% | |
| AATACTTAGGGTAAGAAGGG+TGG | + | chr4.1:10415531-10415550 | MS.gene57309:intron | 40.0% | |
| ACTTATGGAAAGCTCGACTT+TGG | - | chr4.1:10414854-10414873 | None:intergenic | 40.0% | |
| AGCAGAAAATTTGGATCACC+TGG | - | chr4.1:10414961-10414980 | None:intergenic | 40.0% | |
| AGCTCTTGAGAAACAATGTG+TGG | + | chr4.1:10415803-10415822 | MS.gene57309:CDS | 40.0% | |
| AGGAAGTTCAACCTTGTCAA+AGG | - | chr4.1:10415880-10415899 | None:intergenic | 40.0% | |
| AGGTTCAGAAAATCTTCTCC+AGG | + | chr4.1:10414940-10414959 | MS.gene57309:CDS | 40.0% | |
| AGTCTCTCGGCTACATAATT+GGG | + | chr4.1:10414728-10414747 | MS.gene57309:CDS | 40.0% | |
| ATACTTAGGGTAAGAAGGGT+GGG | + | chr4.1:10415532-10415551 | MS.gene57309:intron | 40.0% | |
| ATGATAACCTGCGCTACAAA+TGG | + | chr4.1:10416037-10416056 | MS.gene57309:CDS | 40.0% | |
| ATGGAATGAAGAGATGGGAA+TGG | + | chr4.1:10414214-10414233 | MS.gene57309:CDS | 40.0% | |
| ATTTCCACTCTGAGCTAAAG+AGG | + | chr4.1:10415932-10415951 | MS.gene57309:intron | 40.0% | |
| CAAAAACAAGTGGCTCTTGA+AGG | + | chr4.1:10414793-10414812 | MS.gene57309:CDS | 40.0% | |
| CAGTTTCTTTCCCTTTGACA+AGG | + | chr4.1:10415866-10415885 | MS.gene57309:intron | 40.0% | |
| CTCTTGAGAAACAATGTGTG+GGG | + | chr4.1:10415805-10415824 | MS.gene57309:CDS | 40.0% | |
| GAAGAGTCTCACAATCCTTA+AGG | + | chr4.1:10414388-10414407 | MS.gene57309:intron | 40.0% | |
| GACAAGCACAGCAGAAAATT+TGG | - | chr4.1:10414970-10414989 | None:intergenic | 40.0% | |
| GAGTTGAGGACAAATTTGCA+TGG | - | chr4.1:10415674-10415693 | None:intergenic | 40.0% | |
| GCAGAGGTTATTGAGAAGAA+TGG | + | chr4.1:10414236-10414255 | MS.gene57309:CDS | 40.0% | |
| GCTCTTGAGAAACAATGTGT+GGG | + | chr4.1:10415804-10415823 | MS.gene57309:CDS | 40.0% | |
| GCTTATTTCCATACACACCT+CGG | - | chr4.1:10413935-10413954 | None:intergenic | 40.0% | |
| GGAAAAATGTGGGTATCTAC+TGG | + | chr4.1:10414257-10414276 | MS.gene57309:CDS | 40.0% | |
| GGAAGTTCAACCTTGTCAAA+GGG | - | chr4.1:10415879-10415898 | None:intergenic | 40.0% | |
| GTGAGTGCAAGAATGTAAGT+CGG | - | chr4.1:10415125-10415144 | None:intergenic | 40.0% | |
| TACGTAGTTGTGAGATGGTT+CGG | - | chr4.1:10414004-10414023 | None:intergenic | 40.0% | |
| TAGCAAGAAACTGAAGGCAA+TGG | + | chr4.1:10416138-10416157 | MS.gene57309:CDS | 40.0% | |
| TCTACTGGAATAGTTCGTAG+TGG | + | chr4.1:10414272-10414291 | MS.gene57309:CDS | 40.0% | |
| TGAGTGCAAGAATGTAAGTC+GGG | - | chr4.1:10415124-10415143 | None:intergenic | 40.0% | |
| TGATAACCTGCGCTACAAAT+GGG | + | chr4.1:10416038-10416057 | MS.gene57309:CDS | 40.0% | |
| TTCAATCGAGGAGACATTGT+AGG | + | chr4.1:10414307-10414326 | MS.gene57309:intron | 40.0% | |
| TTTCCACTCTGAGCTAAAGA+GGG | + | chr4.1:10415933-10415952 | MS.gene57309:intron | 40.0% | |
| ! | AGAAACCTTTATGCACTGGT+AGG | + | chr4.1:10415153-10415172 | MS.gene57309:intron | 40.0% |
| ! | ATTTTCTGCTGTGCTTGTCT+AGG | + | chr4.1:10414971-10414990 | MS.gene57309:CDS | 40.0% |
| ! | GAAACCTTTATGCACTGGTA+GGG | + | chr4.1:10415154-10415173 | MS.gene57309:intron | 40.0% |
| ! | GATTTTCTGAACCTACTGTC+TGG | - | chr4.1:10414934-10414953 | None:intergenic | 40.0% |
| !! | AATTTGCAGCTGTGTCGTTT+GGG | + | chr4.1:10415273-10415292 | MS.gene57309:intron | 40.0% |
| AAGCTATTCCGAGGTGTGTA+TGG | + | chr4.1:10413924-10413943 | MS.gene57309:intron | 45.0% | |
| ACAACATCACAATCACCTGC+AGG | - | chr4.1:10416112-10416131 | None:intergenic | 45.0% | |
| ACGTAGTTGTGAGATGGTTC+GGG | - | chr4.1:10414003-10414022 | None:intergenic | 45.0% | |
| ACGTCAAATCCAAAGCCAGA+TGG | + | chr4.1:10414195-10414214 | MS.gene57309:CDS | 45.0% | |
| AGCCAGATGGAATGAAGAGA+TGG | + | chr4.1:10414208-10414227 | MS.gene57309:CDS | 45.0% | |
| ATGTCCCTACCAGTGCATAA+AGG | - | chr4.1:10415161-10415180 | None:intergenic | 45.0% | |
| CAACCGAGAACATGACTCAT+AGG | + | chr4.1:10415085-10415104 | MS.gene57309:intron | 45.0% | |
| CTTTGCCCAAATCGCAATTC+AGG | + | chr4.1:10413415-10413434 | MS.gene57309:CDS | 45.0% | |
| GAGTGCAAGAATGTAAGTCG+GGG | - | chr4.1:10415123-10415142 | None:intergenic | 45.0% | |
| GCCAGATGGAATGAAGAGAT+GGG | + | chr4.1:10414209-10414228 | MS.gene57309:CDS | 45.0% | |
| GGAAAGGAAACTTGGAGTTG+AGG | - | chr4.1:10415688-10415707 | None:intergenic | 45.0% | |
| GGATGTTTATGTCGCTACCT+GGG | + | chr4.1:10415200-10415219 | MS.gene57309:intron | 45.0% | |
| GGCAGGTATCTTATGGAACT+AGG | + | chr4.1:10414586-10414605 | MS.gene57309:intron | 45.0% | |
| TACTTAGGGTAAGAAGGGTG+GGG | + | chr4.1:10415533-10415552 | MS.gene57309:intron | 45.0% | |
| TCCCATCTCTTCATTCCATC+TGG | - | chr4.1:10414213-10414232 | None:intergenic | 45.0% | |
| TGACGTACGTAGTTGTGAGA+TGG | - | chr4.1:10414009-10414028 | None:intergenic | 45.0% | |
| TGGATGTTTATGTCGCTACC+TGG | + | chr4.1:10415199-10415218 | MS.gene57309:intron | 45.0% | |
| TTATGTAGCCGAGAGACTTG+AGG | - | chr4.1:10414726-10414745 | None:intergenic | 45.0% | |
| TTCGCTGTCTACGAGATGTA+AGG | - | chr4.1:10414614-10414633 | None:intergenic | 45.0% | |
| ! | AGATGGTTCGGGAGAGTTTA+TGG | - | chr4.1:10413992-10414011 | None:intergenic | 45.0% |
| ! | CTCTTCATTCCATCTGGCTT+TGG | - | chr4.1:10414207-10414226 | None:intergenic | 45.0% |
| ! | GAATTTGCAGCTGTGTCGTT+TGG | + | chr4.1:10415272-10415291 | MS.gene57309:intron | 45.0% |
| ! | TTTCCCTCTTTAGCTCAGAG+TGG | - | chr4.1:10415939-10415958 | None:intergenic | 45.0% |
| !! | TGTACGAAAAGGTTTCTGGC+AGG | + | chr4.1:10414659-10414678 | MS.gene57309:CDS | 45.0% |
| !!! | AATAAAATATATATTTTCTA+TGG | - | chr4.1:10413665-10413684 | None:intergenic | 5.0% |
| AAAGTCTGCCTGGTCACAGA+AGG | + | chr4.1:10415837-10415856 | MS.gene57309:CDS | 50.0% | |
| AACACTAAAGCAGGGGAAGC+AGG | - | chr4.1:10414136-10414155 | None:intergenic | 50.0% | |
| ACACTAAAGCAGGGGAAGCA+GGG | - | chr4.1:10414135-10414154 | None:intergenic | 50.0% | |
| ATGTTGTTGGGAGCTGTTCG+AGG | + | chr4.1:10414690-10414709 | MS.gene57309:CDS | 50.0% | |
| CAAAGCGATCACAAACCTGC+AGG | + | chr4.1:10416094-10416113 | MS.gene57309:CDS | 50.0% | |
| CAGGAAGACCGGATGTTGTT+GGG | + | chr4.1:10414678-10414697 | MS.gene57309:CDS | 50.0% | |
| CTCTCGGCTACATAATTGGG+CGG | + | chr4.1:10414731-10414750 | MS.gene57309:CDS | 50.0% | |
| GAACAGCTCCCAACAACATC+CGG | - | chr4.1:10414689-10414708 | None:intergenic | 50.0% | |
| GATTCCGTTGAAAGTCTGCC+TGG | + | chr4.1:10415827-10415846 | MS.gene57309:CDS | 50.0% | |
| GGTTGCAACTTGCAAGGTGT+AGG | + | chr4.1:10415234-10415253 | MS.gene57309:intron | 50.0% | |
| GTGACCAGGCAGACTTTCAA+CGG | - | chr4.1:10415834-10415853 | None:intergenic | 50.0% | |
| GTTTATGTCGCTACCTGGGT+GGG | + | chr4.1:10415204-10415223 | MS.gene57309:intron | 50.0% | |
| TACAGGCACCTCAAGTCTCT+CGG | + | chr4.1:10414715-10414734 | MS.gene57309:CDS | 50.0% | |
| TCAACTGTTCAGGGTAGAGC+AGG | - | chr4.1:10415900-10415919 | None:intergenic | 50.0% | |
| TGAAGAGATGGGAATGGCAG+AGG | + | chr4.1:10414220-10414239 | MS.gene57309:CDS | 50.0% | |
| TGCAACTTGCAAGGTGTAGG+CGG | + | chr4.1:10415237-10415256 | MS.gene57309:intron | 50.0% | |
| TGGGCTCAGTGATCACAAAC+TGG | + | chr4.1:10416057-10416076 | MS.gene57309:CDS | 50.0% | |
| TGTTTATGTCGCTACCTGGG+TGG | + | chr4.1:10415203-10415222 | MS.gene57309:intron | 50.0% | |
| TTGGGCGGCATAATGTTGCT+TGG | + | chr4.1:10414746-10414765 | MS.gene57309:CDS | 50.0% | |
| TTTATGTCGCTACCTGGGTG+GGG | + | chr4.1:10415205-10415224 | MS.gene57309:intron | 50.0% | |
| !! | AAGGTTTCTGGCAGGAAGAC+CGG | + | chr4.1:10414667-10414686 | MS.gene57309:CDS | 50.0% |
| !! | GGCTTTGGATTTGACGTTCC+TGG | - | chr4.1:10414192-10414211 | None:intergenic | 50.0% |
| ACTGAGCCCATTTGTAGCGC+AGG | - | chr4.1:10416047-10416066 | None:intergenic | 55.0% | |
| CTGCCTGGTCACAGAAGGAA+GGG | + | chr4.1:10415842-10415861 | MS.gene57309:CDS | 55.0% | |
| GCAACTTGCAAGGTGTAGGC+GGG | + | chr4.1:10415238-10415257 | MS.gene57309:intron | 55.0% | |
| GCAGGAAGACCGGATGTTGT+TGG | + | chr4.1:10414677-10414696 | MS.gene57309:CDS | 55.0% | |
| GGAGGAGGTTGCAACTTGCA+AGG | + | chr4.1:10415228-10415247 | MS.gene57309:intron | 55.0% | |
| TCTGCCTGGTCACAGAAGGA+AGG | + | chr4.1:10415841-10415860 | MS.gene57309:CDS | 55.0% | |
| TGACCCTTCCTTCTGTGACC+AGG | - | chr4.1:10415848-10415867 | None:intergenic | 55.0% | |
| TTATGTCGCTACCTGGGTGG+GGG | + | chr4.1:10415206-10415225 | MS.gene57309:intron | 55.0% | |
| ! | GAGAGACTTGAGGTGCCTGT+AGG | - | chr4.1:10414716-10414735 | None:intergenic | 55.0% |
| !! | GTGTCGTTTGGGAGGGAATG+CGG | + | chr4.1:10415284-10415303 | MS.gene57309:intron | 55.0% |
| !! | TGCAGCTGTGTCGTTTGGGA+GGG | + | chr4.1:10415277-10415296 | MS.gene57309:intron | 55.0% |
| !! | TTGCAGCTGTGTCGTTTGGG+AGG | + | chr4.1:10415276-10415295 | MS.gene57309:intron | 55.0% |
| TATGTCGCTACCTGGGTGGG+GGG | + | chr4.1:10415207-10415226 | MS.gene57309:intron | 60.0% | |
| GGGAGCTGTTCGAGGCCTAC+AGG | + | chr4.1:10414698-10414717 | MS.gene57309:CDS | 65.0% | |
| GCAACCTCCTCCCCCCACCC+AGG | - | chr4.1:10415220-10415239 | None:intergenic | 75.0% | |
| GCTACCTGGGTGGGGGGAGG+AGG | + | chr4.1:10415213-10415232 | MS.gene57309:intron | 75.0% | |
| GTCGCTACCTGGGTGGGGGG+AGG | + | chr4.1:10415210-10415229 | MS.gene57309:intron | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.1 | gene | 10413288 | 10416165 | 10413288 | ID=MS.gene57309 |
| chr4.1 | mRNA | 10413288 | 10416165 | 10413288 | ID=MS.gene57309.t1;Parent=MS.gene57309 |
| chr4.1 | exon | 10413288 | 10413436 | 10413288 | ID=MS.gene57309.t1.exon1;Parent=MS.gene57309.t1 |
| chr4.1 | CDS | 10413288 | 10413436 | 10413288 | ID=cds.MS.gene57309.t1;Parent=MS.gene57309.t1 |
| chr4.1 | exon | 10414193 | 10414324 | 10414193 | ID=MS.gene57309.t1.exon2;Parent=MS.gene57309.t1 |
| chr4.1 | CDS | 10414193 | 10414324 | 10414193 | ID=cds.MS.gene57309.t1;Parent=MS.gene57309.t1 |
| chr4.1 | exon | 10414591 | 10414992 | 10414591 | ID=MS.gene57309.t1.exon3;Parent=MS.gene57309.t1 |
| chr4.1 | CDS | 10414591 | 10414992 | 10414591 | ID=cds.MS.gene57309.t1;Parent=MS.gene57309.t1 |
| chr4.1 | exon | 10415773 | 10415863 | 10415773 | ID=MS.gene57309.t1.exon4;Parent=MS.gene57309.t1 |
| chr4.1 | CDS | 10415773 | 10415863 | 10415773 | ID=cds.MS.gene57309.t1;Parent=MS.gene57309.t1 |
| chr4.1 | exon | 10416016 | 10416165 | 10416016 | ID=MS.gene57309.t1.exon5;Parent=MS.gene57309.t1 |
| chr4.1 | CDS | 10416016 | 10416165 | 10416016 | ID=cds.MS.gene57309.t1;Parent=MS.gene57309.t1 |
| Gene Sequence |
| Protein sequence |
