Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene57316.t1 | XP_013446781.1 | 93.1 | 305 | 16 | 2 | 1 | 305 | 1 | 300 | 9.30E-163 | 582.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene57316.t1 | A0A072TVA7 | 93.1 | 305 | 16 | 2 | 1 | 305 | 1 | 300 | 6.7e-163 | 582.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene052413 | MS.gene57316 | 0.800056 | 1.72E-48 | -1.69E-46 |
| MS.gene05601 | MS.gene57316 | 0.804667 | 1.94E-49 | -1.69E-46 |
| MS.gene059517 | MS.gene57316 | 0.856519 | 3.04E-62 | -1.69E-46 |
| MS.gene059529 | MS.gene57316 | 0.801782 | 7.65E-49 | -1.69E-46 |
| MS.gene059530 | MS.gene57316 | 0.803949 | 2.73E-49 | -1.69E-46 |
| MS.gene060315 | MS.gene57316 | 0.805397 | 1.36E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene57316.t1 | MTR_8g090055 | 93.115 | 305 | 16 | 2 | 1 | 305 | 1 | 300 | 0.0 | 561 |
| MS.gene57316.t1 | MTR_5g037310 | 38.489 | 278 | 139 | 8 | 5 | 267 | 6 | 266 | 3.45e-53 | 176 |
| MS.gene57316.t1 | MTR_5g037310 | 38.489 | 278 | 139 | 8 | 5 | 267 | 6 | 266 | 3.81e-53 | 176 |
| MS.gene57316.t1 | MTR_4g105550 | 29.286 | 280 | 157 | 12 | 13 | 267 | 12 | 275 | 8.91e-26 | 104 |
| MS.gene57316.t1 | MTR_4g123700 | 28.112 | 249 | 154 | 8 | 31 | 268 | 30 | 264 | 3.94e-22 | 94.4 |
| MS.gene57316.t1 | MTR_4g132450 | 27.985 | 268 | 147 | 11 | 33 | 274 | 36 | 283 | 1.41e-21 | 93.6 |
| MS.gene57316.t1 | MTR_2g023970 | 28.000 | 275 | 150 | 13 | 27 | 274 | 16 | 269 | 3.89e-19 | 86.3 |
| MS.gene57316.t1 | MTR_3g069050 | 27.451 | 255 | 143 | 14 | 39 | 282 | 31 | 254 | 5.70e-11 | 63.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene57316.t1 | AT1G10380 | 40.964 | 249 | 126 | 6 | 34 | 267 | 28 | 270 | 1.58e-45 | 156 |
| MS.gene57316.t1 | AT1G10380 | 40.964 | 249 | 126 | 6 | 34 | 267 | 28 | 270 | 3.40e-45 | 155 |
| MS.gene57316.t1 | AT3G17350 | 29.304 | 273 | 162 | 10 | 16 | 270 | 12 | 271 | 4.75e-22 | 94.0 |
| MS.gene57316.t1 | AT1G11915 | 29.682 | 283 | 152 | 13 | 7 | 260 | 1 | 265 | 9.50e-22 | 94.0 |
| MS.gene57316.t1 | AT3G17350 | 29.167 | 264 | 157 | 9 | 16 | 262 | 12 | 262 | 1.04e-20 | 90.5 |
| MS.gene57316.t1 | AT5G50290 | 28.000 | 275 | 161 | 12 | 18 | 267 | 4 | 266 | 1.68e-20 | 90.1 |
Find 94 sgRNAs with CRISPR-Local
Find 122 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GATCCTACTCATTGGGTTTA+TGG | 0.115730 | 4.1:-10486299 | MS.gene57316:CDS |
| TGAAAGTGGATGAAGATATT+TGG | 0.257191 | 4.1:+10486558 | None:intergenic |
| TTGGCACAGGTCCTGGTTGC+GGG | 0.266168 | 4.1:-10486781 | MS.gene57316:CDS |
| GTGTATGAAATGGAGGTTAT+AGG | 0.283646 | 4.1:+10486674 | None:intergenic |
| CTCACAACTAGTACATTTAG+TGG | 0.331784 | 4.1:+10486232 | None:intergenic |
| ATCAAAACCAAGATTTCCTT+TGG | 0.338876 | 4.1:-10486112 | MS.gene57316:CDS |
| TTTGATGTGCATGTTATGTA+TGG | 0.363083 | 4.1:+10486743 | None:intergenic |
| GTTAAATCAATGCCAAAGTT+TGG | 0.363622 | 4.1:+10486590 | None:intergenic |
| TACATAACATGCACATCAAA+TGG | 0.388250 | 4.1:-10486740 | MS.gene57316:CDS |
| CGGGGAACCTAGACGGCAAA+GGG | 0.391013 | 4.1:-10486391 | MS.gene57316:CDS |
| TTTGGCACAGGTCCTGGTTG+CGG | 0.395015 | 4.1:-10486782 | MS.gene57316:CDS |
| ACACAAACAAATCCACTTCC+TGG | 0.398611 | 4.1:+10486179 | None:intergenic |
| TCAACTCCCCTTTGCCGTCT+AGG | 0.402495 | 4.1:+10486384 | None:intergenic |
| TAGAGTCCCAAAGGAAATCT+TGG | 0.407259 | 4.1:+10486105 | None:intergenic |
| TATCCCTTTGGCACAGGTCC+TGG | 0.410285 | 4.1:-10486788 | MS.gene57316:CDS |
| GATCGTAATTAGAGCAATCA+AGG | 0.418096 | 4.1:+10486132 | None:intergenic |
| CCCTACTGATCCTACTCATT+GGG | 0.420444 | 4.1:-10486306 | MS.gene57316:CDS |
| GAATGTCTGGAGTTCCATCT+TGG | 0.421862 | 4.1:-10485660 | MS.gene57316:CDS |
| TGTATGAAATGGAGGTTATA+GGG | 0.425846 | 4.1:+10486675 | None:intergenic |
| TGTTGTTGAGGCTGTGGGTG+TGG | 0.432596 | 4.1:+10486853 | None:intergenic |
| TATACACAACATGTGTTAGT+AGG | 0.444066 | 4.1:+10486419 | None:intergenic |
| TATGAACAGTTGGGAATGTC+TGG | 0.453180 | 4.1:-10485673 | MS.gene57316:intron |
| ACCCTACTGATCCTACTCAT+TGG | 0.456155 | 4.1:-10486307 | MS.gene57316:CDS |
| TTTGTTTGTGTTTGTAAAGG+TGG | 0.459550 | 4.1:-10486167 | MS.gene57316:CDS |
| AATGGAGGTTATAGGGTATG+AGG | 0.466527 | 4.1:+10486682 | None:intergenic |
| TCAAAACCAAGATTTCCTTT+GGG | 0.473584 | 4.1:-10486111 | MS.gene57316:CDS |
| AACAGTGGGGACCCGCAACC+AGG | 0.476820 | 4.1:+10486770 | None:intergenic |
| TGTTAGTGTTGTTGAGGCTG+TGG | 0.477766 | 4.1:+10486847 | None:intergenic |
| GTCTGGAGTTCCATCTTGGC+TGG | 0.482605 | 4.1:-10485656 | MS.gene57316:CDS |
| ATGCAAACGTCACCAAACTT+TGG | 0.492190 | 4.1:-10486602 | MS.gene57316:CDS |
| ATACAAGTCAAGTATCCCTT+TGG | 0.494214 | 4.1:-10486800 | MS.gene57316:CDS |
| CCGGGGAACCTAGACGGCAA+AGG | 0.496288 | 4.1:-10486392 | MS.gene57316:CDS |
| CACATGTTGTGTATACTCAC+CGG | 0.497181 | 4.1:-10486411 | MS.gene57316:CDS |
| ATCAAAAGAAGTGTCACAAA+TGG | 0.498238 | 4.1:+10486505 | None:intergenic |
| CCTTTGCCGTCTAGGTTCCC+CGG | 0.498477 | 4.1:+10486392 | None:intergenic |
| GTGGAAAGAGGTGGTAGTAG+TGG | 0.501478 | 4.1:+10486911 | None:intergenic |
| TGTGAGTGTGAGAGTGGAAG+TGG | 0.506008 | 4.1:+10486652 | None:intergenic |
| CTAAGATGAGAATCATGAAA+AGG | 0.513752 | 4.1:+10486879 | None:intergenic |
| GGGTGGTGTGAGTGTGAGAG+TGG | 0.515614 | 4.1:+10486646 | None:intergenic |
| GTTAGTGTTGTTGAGGCTGT+GGG | 0.518223 | 4.1:+10486848 | None:intergenic |
| TATACTTCGGTTGTGTCACT+TGG | 0.519729 | 4.1:-10486335 | MS.gene57316:CDS |
| AGTGGAAGTGGTGTATGAAA+TGG | 0.521135 | 4.1:+10486664 | None:intergenic |
| GAAAATGATACCAGCCAAGA+TGG | 0.521207 | 4.1:+10485646 | None:intergenic |
| GGATATGCTCCTCCAGGAAG+TGG | 0.522288 | 4.1:-10486191 | MS.gene57316:CDS |
| AGTAGTGGTGGTAGTGCCAT+TGG | 0.534426 | 4.1:+10486926 | None:intergenic |
| GGATTTGTTTGTGTTTGTAA+AGG | 0.540887 | 4.1:-10486170 | MS.gene57316:CDS |
| GCAACCAGGACCTGTGCCAA+AGG | 0.541377 | 4.1:+10486784 | None:intergenic |
| GCAAGAGAGGAGGATGAAAG+TGG | 0.545372 | 4.1:+10486544 | None:intergenic |
| GTCAAGTATCCCTTTGGCAC+AGG | 0.545996 | 4.1:-10486794 | MS.gene57316:CDS |
| ACATGTTGTGTATACTCACC+GGG | 0.550531 | 4.1:-10486410 | MS.gene57316:CDS |
| ACCCAATGAGTAGGATCAGT+AGG | 0.552236 | 4.1:+10486305 | None:intergenic |
| TGCCCTCAAGTAGTCTCACT+TGG | 0.552797 | 4.1:-10486458 | MS.gene57316:CDS |
| GAGAGTAGTGGTGGTGTATG+TGG | 0.555000 | 4.1:-10486212 | MS.gene57316:CDS |
| TACTCATTGGGTTTATGGAG+TGG | 0.555908 | 4.1:-10486294 | MS.gene57316:CDS |
| CATGAAAAGGTTGATGAGGG+TGG | 0.559660 | 4.1:+10486892 | None:intergenic |
| CAACCAGGACCTGTGCCAAA+GGG | 0.563262 | 4.1:+10486785 | None:intergenic |
| TTGATGTGCATGTTATGTAT+GGG | 0.566236 | 4.1:+10486744 | None:intergenic |
| CATTATCATCCGATTACACT+AGG | 0.569260 | 4.1:+10485621 | None:intergenic |
| GGAAGTGGTGTATGAAATGG+AGG | 0.572115 | 4.1:+10486667 | None:intergenic |
| AAAGTTTGGTGACGTTTGCA+TGG | 0.574117 | 4.1:+10486604 | None:intergenic |
| GAAAGAGGTGGTAGTAGTGG+TGG | 0.574477 | 4.1:+10486914 | None:intergenic |
| CCCAATGAGTAGGATCAGTA+GGG | 0.577746 | 4.1:+10486306 | None:intergenic |
| GTATGTGGATATGCTCCTCC+AGG | 0.583052 | 4.1:-10486197 | MS.gene57316:CDS |
| GAGGAGAGATAGAGTCCCAA+AGG | 0.583741 | 4.1:+10486096 | None:intergenic |
| TGATTGTAGTGGTTATACTT+CGG | 0.584725 | 4.1:-10486348 | MS.gene57316:CDS |
| GGTGGTGCAAGTAGACATGT+AGG | 0.584778 | 4.1:+10486625 | None:intergenic |
| AGGTTGATGAGGGTGGAAAG+AGG | 0.585956 | 4.1:+10486899 | None:intergenic |
| GCACACTGTTAGTGTTGTTG+AGG | 0.594642 | 4.1:+10486841 | None:intergenic |
| TACCAAGTGAGACTACTTGA+GGG | 0.596440 | 4.1:+10486456 | None:intergenic |
| ATACCAAGTGAGACTACTTG+AGG | 0.598463 | 4.1:+10486455 | None:intergenic |
| TTATGTATGGGTTGAACAGT+GGG | 0.603161 | 4.1:+10486756 | None:intergenic |
| CTTAGAGAGAATGATTGTAG+TGG | 0.610496 | 4.1:-10486359 | MS.gene57316:CDS |
| GTGGATGAAGATATTTGGAA+TGG | 0.613981 | 4.1:+10486563 | None:intergenic |
| TACTCACCGGGGAACCTAGA+CGG | 0.615280 | 4.1:-10486398 | MS.gene57316:CDS |
| AACATACTGTTGTACATGGG+AGG | 0.621855 | 4.1:+10486074 | None:intergenic |
| ACTCCATAAACCCAATGAGT+AGG | 0.626290 | 4.1:+10486296 | None:intergenic |
| GAATCATGAAAAGGTTGATG+AGG | 0.631423 | 4.1:+10486888 | None:intergenic |
| TTGATGAGGGTGGAAAGAGG+TGG | 0.635922 | 4.1:+10486902 | None:intergenic |
| ATACTGTTGTACATGGGAGG+AGG | 0.638228 | 4.1:+10486077 | None:intergenic |
| AATCATGAAAAGGTTGATGA+GGG | 0.650509 | 4.1:+10486889 | None:intergenic |
| AAGAGTAAAGAGAAGCACAA+AGG | 0.652408 | 4.1:+10486480 | None:intergenic |
| GTTATGTATGGGTTGAACAG+TGG | 0.654062 | 4.1:+10486755 | None:intergenic |
| GTTTGGTGACGTTTGCATGG+TGG | 0.670403 | 4.1:+10486607 | None:intergenic |
| GTGGCATTGAAATATACTCA+TGG | 0.674830 | 4.1:-10486275 | MS.gene57316:CDS |
| GTATTGAGCCACATGTGTCA+TGG | 0.676021 | 4.1:+10486819 | None:intergenic |
| GGGGAACCTAGACGGCAAAG+GGG | 0.692978 | 4.1:-10486390 | MS.gene57316:CDS |
| GTGGTGCAAGTAGACATGTA+GGG | 0.696710 | 4.1:+10486626 | None:intergenic |
| ACTAGTTGTGAGAGTAGTGG+TGG | 0.700797 | 4.1:-10486221 | MS.gene57316:CDS |
| TGTACTAGTTGTGAGAGTAG+TGG | 0.707622 | 4.1:-10486224 | MS.gene57316:CDS |
| GTGCAAGTAGACATGTAGGG+TGG | 0.743146 | 4.1:+10486629 | None:intergenic |
| CATGTTGTGTATACTCACCG+GGG | 0.745636 | 4.1:-10486409 | MS.gene57316:CDS |
| ACAGTGTGCCATGACACATG+TGG | 0.759996 | 4.1:-10486827 | MS.gene57316:CDS |
| TATGTATGGGTTGAACAGTG+GGG | 0.785551 | 4.1:+10486757 | None:intergenic |
| CAAACAAATCCACTTCCTGG+AGG | 0.785898 | 4.1:+10486182 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| ! | AAAAACATACTGTTGTACAT+GGG | + | chr4.1:10486489-10486508 | None:intergenic | 25.0% |
| ! | AAAAAGGAAAAATAGATGGT+TGG | - | chr4.1:10486674-10486693 | MS.gene57316:CDS | 25.0% |
| ! | AAAACAATATGCCAAAGTAA+TGG | - | chr4.1:10486739-10486758 | MS.gene57316:CDS | 25.0% |
| ! | AAACAATATGCCAAAGTAAT+GGG | - | chr4.1:10486740-10486759 | MS.gene57316:CDS | 25.0% |
| ! | AAAGAAACAACAAAAAGAGA+AGG | + | chr4.1:10486512-10486531 | None:intergenic | 25.0% |
| ! | ATAATAGTTACCCATTACTT+TGG | + | chr4.1:10486753-10486772 | None:intergenic | 25.0% |
| ! | CAAGAAAAAGGAAAAATAGA+TGG | - | chr4.1:10486670-10486689 | MS.gene57316:CDS | 25.0% |
| ! | TATTATTCTGTACACTTGAA+AGG | - | chr4.1:10486767-10486786 | MS.gene57316:CDS | 25.0% |
| !! | ATTTTCTGAGTACAAGAAAA+AGG | - | chr4.1:10486658-10486677 | MS.gene57316:CDS | 25.0% |
| !!! | AAATGGTTGAACTTTTTTCT+TGG | + | chr4.1:10486038-10486057 | None:intergenic | 25.0% |
| !!! | TTTATATTGATTCTCTCTCT+TGG | - | chr4.1:10486813-10486832 | MS.gene57316:CDS | 25.0% |
| !!! | TTTCGGGTCTTTTTTAATTA+GGG | - | chr4.1:10486578-10486597 | MS.gene57316:CDS | 25.0% |
| !!! | TTTTCGGGTCTTTTTTAATT+AGG | - | chr4.1:10486577-10486596 | MS.gene57316:CDS | 25.0% |
| AAAAAAGACCCGAAAACTAT+GGG | + | chr4.1:10486573-10486592 | None:intergenic | 30.0% | |
| ATCAAAACCAAGATTTCCTT+TGG | - | chr4.1:10486445-10486464 | MS.gene57316:CDS | 30.0% | |
| CTAAGATGAGAATCATGAAA+AGG | + | chr4.1:10485681-10485700 | None:intergenic | 30.0% | |
| GAAAAACATACTGTTGTACA+TGG | + | chr4.1:10486490-10486509 | None:intergenic | 30.0% | |
| GAAATGAGTCAAATGACTAT+TGG | - | chr4.1:10486601-10486620 | MS.gene57316:CDS | 30.0% | |
| GTTAAATCAATGCCAAAGTT+TGG | + | chr4.1:10485970-10485989 | None:intergenic | 30.0% | |
| TAAAAAAGACCCGAAAACTA+TGG | + | chr4.1:10486574-10486593 | None:intergenic | 30.0% | |
| TACATAACATGCACATCAAA+TGG | - | chr4.1:10485817-10485836 | MS.gene57316:intron | 30.0% | |
| TATACACAACATGTGTTAGT+AGG | + | chr4.1:10486141-10486160 | None:intergenic | 30.0% | |
| TCAAAACCAAGATTTCCTTT+GGG | - | chr4.1:10486446-10486465 | MS.gene57316:CDS | 30.0% | |
| TGAAAGTGGATGAAGATATT+TGG | + | chr4.1:10486002-10486021 | None:intergenic | 30.0% | |
| TGATTGTAGTGGTTATACTT+CGG | - | chr4.1:10486209-10486228 | MS.gene57316:CDS | 30.0% | |
| TGTATGAAATGGAGGTTATA+GGG | + | chr4.1:10485885-10485904 | None:intergenic | 30.0% | |
| TTGATGTGCATGTTATGTAT+GGG | + | chr4.1:10485816-10485835 | None:intergenic | 30.0% | |
| TTTGATGTGCATGTTATGTA+TGG | + | chr4.1:10485817-10485836 | None:intergenic | 30.0% | |
| TTTGTTTGTGTTTGTAAAGG+TGG | - | chr4.1:10486390-10486409 | MS.gene57316:CDS | 30.0% | |
| ! | GGATTTGTTTGTGTTTGTAA+AGG | - | chr4.1:10486387-10486406 | MS.gene57316:CDS | 30.0% |
| ! | TTTACATTCCCCATAGTTTT+CGG | - | chr4.1:10486561-10486580 | MS.gene57316:CDS | 30.0% |
| !! | AATCATGAAAAGGTTGATGA+GGG | + | chr4.1:10485671-10485690 | None:intergenic | 30.0% |
| !! | ATCAAAAGAAGTGTCACAAA+TGG | + | chr4.1:10486055-10486074 | None:intergenic | 30.0% |
| !!! | TTCGGGTCTTTTTTAATTAG+GGG | - | chr4.1:10486579-10486598 | MS.gene57316:CDS | 30.0% |
| AAAAAGACCCGAAAACTATG+GGG | + | chr4.1:10486572-10486591 | None:intergenic | 35.0% | |
| AAAAATAGATGGTTGGACGA+TGG | - | chr4.1:10486681-10486700 | MS.gene57316:CDS | 35.0% | |
| ATACAAGTCAAGTATCCCTT+TGG | - | chr4.1:10485757-10485776 | MS.gene57316:intron | 35.0% | |
| CTCACAACTAGTACATTTAG+TGG | + | chr4.1:10486328-10486347 | None:intergenic | 35.0% | |
| CTGTTCTGTTATGAACAGTT+GGG | - | chr4.1:10486875-10486894 | MS.gene57316:CDS | 35.0% | |
| CTTAGAGAGAATGATTGTAG+TGG | - | chr4.1:10486198-10486217 | MS.gene57316:CDS | 35.0% | |
| GATCGTAATTAGAGCAATCA+AGG | + | chr4.1:10486428-10486447 | None:intergenic | 35.0% | |
| GTGGATGAAGATATTTGGAA+TGG | + | chr4.1:10485997-10486016 | None:intergenic | 35.0% | |
| GTGTATGAAATGGAGGTTAT+AGG | + | chr4.1:10485886-10485905 | None:intergenic | 35.0% | |
| GTGTTAGTAGGAGAAAAAAG+AGG | + | chr4.1:10486129-10486148 | None:intergenic | 35.0% | |
| ! | AAGAGTAAAGAGAAGCACAA+AGG | + | chr4.1:10486080-10486099 | None:intergenic | 35.0% |
| ! | GTGGCATTGAAATATACTCA+TGG | - | chr4.1:10486282-10486301 | MS.gene57316:CDS | 35.0% |
| ! | TTACATTCCCCATAGTTTTC+GGG | - | chr4.1:10486562-10486581 | MS.gene57316:CDS | 35.0% |
| ! | TTATGTATGGGTTGAACAGT+GGG | + | chr4.1:10485804-10485823 | None:intergenic | 35.0% |
| !! | GAATCATGAAAAGGTTGATG+AGG | + | chr4.1:10485672-10485691 | None:intergenic | 35.0% |
| !!! | AACTTTTTTCTTGGCAAGAG+AGG | + | chr4.1:10486029-10486048 | None:intergenic | 35.0% |
| AACATACTGTTGTACATGGG+AGG | + | chr4.1:10486486-10486505 | None:intergenic | 40.0% | |
| AATGGAGGTTATAGGGTATG+AGG | + | chr4.1:10485878-10485897 | None:intergenic | 40.0% | |
| ACACAAACAAATCCACTTCC+TGG | + | chr4.1:10486381-10486400 | None:intergenic | 40.0% | |
| ACATGTTGTGTATACTCACC+GGG | - | chr4.1:10486147-10486166 | MS.gene57316:CDS | 40.0% | |
| ACTCCATAAACCCAATGAGT+AGG | + | chr4.1:10486264-10486283 | None:intergenic | 40.0% | |
| AGTGGAAGTGGTGTATGAAA+TGG | + | chr4.1:10485896-10485915 | None:intergenic | 40.0% | |
| ATACCAAGTGAGACTACTTG+AGG | + | chr4.1:10486105-10486124 | None:intergenic | 40.0% | |
| ATGCAAACGTCACCAAACTT+TGG | - | chr4.1:10485955-10485974 | MS.gene57316:intron | 40.0% | |
| CACATGTTGTGTATACTCAC+CGG | - | chr4.1:10486146-10486165 | MS.gene57316:CDS | 40.0% | |
| CCAACTGTTCATAACAGAAC+AGG | + | chr4.1:10486877-10486896 | None:intergenic | 40.0% | |
| CCTGTTCTGTTATGAACAGT+TGG | - | chr4.1:10486874-10486893 | MS.gene57316:CDS | 40.0% | |
| GAAAATGATACCAGCCAAGA+TGG | + | chr4.1:10486914-10486933 | None:intergenic | 40.0% | |
| GATCCTACTCATTGGGTTTA+TGG | - | chr4.1:10486258-10486277 | MS.gene57316:CDS | 40.0% | |
| TACCAAGTGAGACTACTTGA+GGG | + | chr4.1:10486104-10486123 | None:intergenic | 40.0% | |
| TACTCATTGGGTTTATGGAG+TGG | - | chr4.1:10486263-10486282 | MS.gene57316:CDS | 40.0% | |
| TAGAGTCCCAAAGGAAATCT+TGG | + | chr4.1:10486455-10486474 | None:intergenic | 40.0% | |
| TATGAACAGTTGGGAATGTC+TGG | - | chr4.1:10486884-10486903 | MS.gene57316:CDS | 40.0% | |
| TGTACTAGTTGTGAGAGTAG+TGG | - | chr4.1:10486333-10486352 | MS.gene57316:CDS | 40.0% | |
| ! | ATGAGGATGTGTGAGTTTTG+AGG | + | chr4.1:10485861-10485880 | None:intergenic | 40.0% |
| ! | GTTATGTATGGGTTGAACAG+TGG | + | chr4.1:10485805-10485824 | None:intergenic | 40.0% |
| ! | TATACTTCGGTTGTGTCACT+TGG | - | chr4.1:10486222-10486241 | MS.gene57316:CDS | 40.0% |
| ! | TATGTATGGGTTGAACAGTG+GGG | + | chr4.1:10485803-10485822 | None:intergenic | 40.0% |
| !! | AAAGTTTGGTGACGTTTGCA+TGG | + | chr4.1:10485956-10485975 | None:intergenic | 40.0% |
| !!! | TGTGAGTTTTGAGGATGAGT+TGG | + | chr4.1:10485852-10485871 | None:intergenic | 40.0% |
| !!! | TTTTTTCTTGGCAAGAGAGG+AGG | + | chr4.1:10486026-10486045 | None:intergenic | 40.0% |
| ACCCAATGAGTAGGATCAGT+AGG | + | chr4.1:10486255-10486274 | None:intergenic | 45.0% | |
| ACCCTACTGATCCTACTCAT+TGG | - | chr4.1:10486250-10486269 | MS.gene57316:CDS | 45.0% | |
| ACTAGTTGTGAGAGTAGTGG+TGG | - | chr4.1:10486336-10486355 | MS.gene57316:CDS | 45.0% | |
| ATACTGTTGTACATGGGAGG+AGG | + | chr4.1:10486483-10486502 | None:intergenic | 45.0% | |
| CAAACAAATCCACTTCCTGG+AGG | + | chr4.1:10486378-10486397 | None:intergenic | 45.0% | |
| CATGTTGTGTATACTCACCG+GGG | - | chr4.1:10486148-10486167 | MS.gene57316:CDS | 45.0% | |
| CCCAATGAGTAGGATCAGTA+GGG | + | chr4.1:10486254-10486273 | None:intergenic | 45.0% | |
| CCCTACTGATCCTACTCATT+GGG | - | chr4.1:10486251-10486270 | MS.gene57316:CDS | 45.0% | |
| GGAAGTGGTGTATGAAATGG+AGG | + | chr4.1:10485893-10485912 | None:intergenic | 45.0% | |
| GTATTGAGCCACATGTGTCA+TGG | + | chr4.1:10485741-10485760 | None:intergenic | 45.0% | |
| GTGGTGCAAGTAGACATGTA+GGG | + | chr4.1:10485934-10485953 | None:intergenic | 45.0% | |
| ! | GAATGTCTGGAGTTCCATCT+TGG | - | chr4.1:10486897-10486916 | MS.gene57316:CDS | 45.0% |
| ! | GCACACTGTTAGTGTTGTTG+AGG | + | chr4.1:10485719-10485738 | None:intergenic | 45.0% |
| ! | GTTAGTGTTGTTGAGGCTGT+GGG | + | chr4.1:10485712-10485731 | None:intergenic | 45.0% |
| ! | TGTTAGTGTTGTTGAGGCTG+TGG | + | chr4.1:10485713-10485732 | None:intergenic | 45.0% |
| !! | CATGAAAAGGTTGATGAGGG+TGG | + | chr4.1:10485668-10485687 | None:intergenic | 45.0% |
| ACAGTGTGCCATGACACATG+TGG | - | chr4.1:10485730-10485749 | MS.gene57316:intron | 50.0% | |
| GAAAGAGGTGGTAGTAGTGG+TGG | + | chr4.1:10485646-10485665 | None:intergenic | 50.0% | |
| GAGGAGAGATAGAGTCCCAA+AGG | + | chr4.1:10486464-10486483 | None:intergenic | 50.0% | |
| GCAAGAGAGGAGGATGAAAG+TGG | + | chr4.1:10486016-10486035 | None:intergenic | 50.0% | |
| GGTGGTGCAAGTAGACATGT+AGG | + | chr4.1:10485935-10485954 | None:intergenic | 50.0% | |
| GTATGTGGATATGCTCCTCC+AGG | - | chr4.1:10486360-10486379 | MS.gene57316:CDS | 50.0% | |
| GTCAAGTATCCCTTTGGCAC+AGG | - | chr4.1:10485763-10485782 | MS.gene57316:intron | 50.0% | |
| GTGCAAGTAGACATGTAGGG+TGG | + | chr4.1:10485931-10485950 | None:intergenic | 50.0% | |
| GTGGAAAGAGGTGGTAGTAG+TGG | + | chr4.1:10485649-10485668 | None:intergenic | 50.0% | |
| TGCCCTCAAGTAGTCTCACT+TGG | - | chr4.1:10486099-10486118 | MS.gene57316:CDS | 50.0% | |
| TGTGAGTGTGAGAGTGGAAG+TGG | + | chr4.1:10485908-10485927 | None:intergenic | 50.0% | |
| TTGATGAGGGTGGAAAGAGG+TGG | + | chr4.1:10485658-10485677 | None:intergenic | 50.0% | |
| ! | GAGAGTAGTGGTGGTGTATG+TGG | - | chr4.1:10486345-10486364 | MS.gene57316:CDS | 50.0% |
| !! | AGGTTGATGAGGGTGGAAAG+AGG | + | chr4.1:10485661-10485680 | None:intergenic | 50.0% |
| !! | GTTTGGTGACGTTTGCATGG+TGG | + | chr4.1:10485953-10485972 | None:intergenic | 50.0% |
| CAACCAGGACCTGTGCCAAA+GGG | + | chr4.1:10485775-10485794 | None:intergenic | 55.0% | |
| GGATATGCTCCTCCAGGAAG+TGG | - | chr4.1:10486366-10486385 | MS.gene57316:CDS | 55.0% | |
| TACTCACCGGGGAACCTAGA+CGG | - | chr4.1:10486159-10486178 | MS.gene57316:CDS | 55.0% | |
| TATCCCTTTGGCACAGGTCC+TGG | - | chr4.1:10485769-10485788 | MS.gene57316:intron | 55.0% | |
| TCAACTCCCCTTTGCCGTCT+AGG | + | chr4.1:10486176-10486195 | None:intergenic | 55.0% | |
| TGTTGTTGAGGCTGTGGGTG+TGG | + | chr4.1:10485707-10485726 | None:intergenic | 55.0% | |
| TTTGGCACAGGTCCTGGTTG+CGG | - | chr4.1:10485775-10485794 | MS.gene57316:intron | 55.0% | |
| ! | GTCTGGAGTTCCATCTTGGC+TGG | - | chr4.1:10486901-10486920 | MS.gene57316:CDS | 55.0% |
| CCTTTGCCGTCTAGGTTCCC+CGG | + | chr4.1:10486168-10486187 | None:intergenic | 60.0% | |
| CGGGGAACCTAGACGGCAAA+GGG | - | chr4.1:10486166-10486185 | MS.gene57316:CDS | 60.0% | |
| GCAACCAGGACCTGTGCCAA+AGG | + | chr4.1:10485776-10485795 | None:intergenic | 60.0% | |
| GGGGAACCTAGACGGCAAAG+GGG | - | chr4.1:10486167-10486186 | MS.gene57316:CDS | 60.0% | |
| GGGTGGTGTGAGTGTGAGAG+TGG | + | chr4.1:10485914-10485933 | None:intergenic | 60.0% | |
| TTGGCACAGGTCCTGGTTGC+GGG | - | chr4.1:10485776-10485795 | MS.gene57316:intron | 60.0% | |
| AACAGTGGGGACCCGCAACC+AGG | + | chr4.1:10485790-10485809 | None:intergenic | 65.0% | |
| CCGGGGAACCTAGACGGCAA+AGG | - | chr4.1:10486165-10486184 | MS.gene57316:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.1 | gene | 10485634 | 10486945 | 10485634 | ID=MS.gene57316 |
| chr4.1 | mRNA | 10485634 | 10486945 | 10485634 | ID=MS.gene57316.t1;Parent=MS.gene57316 |
| chr4.1 | exon | 10486081 | 10486945 | 10486081 | ID=MS.gene57316.t1.exon1;Parent=MS.gene57316.t1 |
| chr4.1 | CDS | 10486081 | 10486945 | 10486081 | ID=cds.MS.gene57316.t1;Parent=MS.gene57316.t1 |
| chr4.1 | exon | 10485634 | 10485686 | 10485634 | ID=MS.gene57316.t1.exon2;Parent=MS.gene57316.t1 |
| chr4.1 | CDS | 10485634 | 10485686 | 10485634 | ID=cds.MS.gene57316.t1;Parent=MS.gene57316.t1 |
| Gene Sequence |
| Protein sequence |
