Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene57501.t1 | KEH18955.1 | 81 | 500 | 21 | 1 | 1 | 426 | 1 | 500 | 8.50E-210 | 740.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene57501.t1 | F4IH31 | 67.4 | 227 | 73 | 1 | 745 | 971 | 105 | 330 | 2.1e-84 | 315.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene57501.t1 | A0A072TZJ6 | 81.0 | 500 | 21 | 1 | 1 | 426 | 1 | 500 | 6.1e-210 | 740.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049711 | MS.gene57501 | 0.810889 | 9.21E-51 | -1.69E-46 |
| MS.gene051648 | MS.gene57501 | 0.80883 | 2.55E-50 | -1.69E-46 |
| MS.gene053536 | MS.gene57501 | 0.828938 | 6.80E-55 | -1.69E-46 |
| MS.gene053538 | MS.gene57501 | 0.823053 | 1.70E-53 | -1.69E-46 |
| MS.gene053945 | MS.gene57501 | 0.81791 | 2.58E-52 | -1.69E-46 |
| MS.gene055537 | MS.gene57501 | 0.802502 | 5.44E-49 | -1.69E-46 |
| MS.gene056169 | MS.gene57501 | 0.826344 | 2.86E-54 | -1.69E-46 |
| MS.gene05894 | MS.gene57501 | 0.823561 | 1.30E-53 | -1.69E-46 |
| MS.gene059424 | MS.gene57501 | 0.837416 | 5.27E-57 | -1.69E-46 |
| MS.gene060962 | MS.gene57501 | 0.805307 | 1.42E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene57501.t1 | MTR_8g432670 | 94.872 | 351 | 18 | 0 | 76 | 426 | 150 | 500 | 0.0 | 655 |
| MS.gene57501.t1 | MTR_8g432670 | 79.734 | 301 | 12 | 2 | 427 | 678 | 170 | 470 | 4.46e-142 | 433 |
| MS.gene57501.t1 | MTR_8g432670 | 96.053 | 76 | 3 | 0 | 1 | 76 | 1 | 76 | 2.33e-40 | 157 |
| MS.gene57501.t1 | MTR_8g432670 | 95.833 | 72 | 3 | 0 | 675 | 746 | 177 | 248 | 1.61e-34 | 139 |
| MS.gene57501.t1 | MTR_5g083730 | 93.860 | 228 | 13 | 1 | 745 | 972 | 100 | 326 | 1.23e-151 | 451 |
| MS.gene57501.t1 | MTR_5g083720 | 90.351 | 228 | 22 | 0 | 745 | 972 | 99 | 326 | 1.61e-139 | 420 |
| MS.gene57501.t1 | MTR_4g102810 | 40.991 | 222 | 117 | 3 | 214 | 426 | 364 | 580 | 1.88e-37 | 149 |
| MS.gene57501.t1 | MTR_4g102810 | 44.595 | 74 | 35 | 3 | 1 | 72 | 1 | 70 | 8.21e-11 | 66.2 |
| MS.gene57501.t1 | MTR_4g105430 | 33.750 | 160 | 90 | 3 | 280 | 424 | 212 | 370 | 9.95e-14 | 74.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene57501.t1 | AT2G40410 | 67.401 | 227 | 73 | 1 | 745 | 971 | 105 | 330 | 6.14e-106 | 333 |
| MS.gene57501.t1 | AT3G56170 | 64.912 | 228 | 79 | 1 | 745 | 972 | 95 | 321 | 7.94e-103 | 324 |
| MS.gene57501.t1 | AT4G23040 | 45.701 | 221 | 99 | 4 | 214 | 426 | 318 | 525 | 6.07e-43 | 165 |
| MS.gene57501.t1 | AT4G11740 | 41.228 | 228 | 108 | 2 | 214 | 426 | 348 | 564 | 8.16e-43 | 165 |
| MS.gene57501.t1 | AT2G40410 | 59.836 | 122 | 48 | 1 | 745 | 866 | 105 | 225 | 4.15e-42 | 154 |
| MS.gene57501.t1 | AT4G00752 | 35.714 | 322 | 165 | 8 | 113 | 426 | 181 | 468 | 2.85e-37 | 147 |
Find 163 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTGATTTCATTGACATTTA+TGG | 0.037512 | 8.2:-65267196 | MS.gene57501:CDS |
| CAAGAATGAGGCTTTATTTC+TGG | 0.096417 | 8.2:-65266299 | MS.gene57501:CDS |
| TATGATTTCATAGACATTTA+TGG | 0.120097 | 8.2:-65264251 | MS.gene57501:CDS |
| TCTTTGAGAGTCCTTATTTA+TGG | 0.141511 | 8.2:-65261973 | MS.gene57501:CDS |
| CTGATTGAAACTGCACTTTA+TGG | 0.144237 | 8.2:-65265094 | MS.gene57501:CDS |
| CTGATTGAAACTGCACTTTA+TGG | 0.144237 | 8.2:-65270753 | MS.gene57501:CDS |
| TTATTTCTGGAGTTGATTTA+TGG | 0.168476 | 8.2:-65266286 | MS.gene57501:CDS |
| TATCATTTCACTGTCTTTAC+AGG | 0.202618 | 8.2:-65271729 | MS.gene57501:intron |
| TCTCATGGTCGAGGATATTA+TGG | 0.217916 | 8.2:-65272051 | MS.gene57501:CDS |
| TGTCATTTCACTGTCTTTAC+AGG | 0.243061 | 8.2:-65263468 | MS.gene57501:intron |
| TGTCATTTCACTGTCTTTAC+AGG | 0.243061 | 8.2:-65265963 | MS.gene57501:intron |
| TAGGAATTGTTGACTTTCTA+TGG | 0.246130 | 8.2:-65263127 | MS.gene57501:CDS |
| TTTCTTCTTGCTTTGATGAA+TGG | 0.255614 | 8.2:+65264776 | None:intergenic |
| TTTCTTCTTGCTTTGATGAA+TGG | 0.255614 | 8.2:+65270435 | None:intergenic |
| AGCTCAATCCGGCGCGGTTT+TGG | 0.259021 | 8.2:+65272106 | None:intergenic |
| GAGCGAAGCGAGTTGGATTA+TGG | 0.267595 | 8.2:-65261601 | MS.gene57501:CDS |
| TTCTTCTTGCTTTGATGAAT+GGG | 0.268129 | 8.2:+65264777 | None:intergenic |
| TTCTTCTTGCTTTGATGAAT+GGG | 0.268129 | 8.2:+65270436 | None:intergenic |
| GCACTTACGGTTTCTAGTTC+TGG | 0.284790 | 8.2:+65261750 | None:intergenic |
| ACTGATCTTCTCCATAAATA+AGG | 0.312433 | 8.2:+65261962 | None:intergenic |
| TGAACGAGAAGATGATGATT+TGG | 0.317721 | 8.2:-65263495 | MS.gene57501:CDS |
| TGAACGAGAAGATGATGATT+TGG | 0.317721 | 8.2:-65265990 | MS.gene57501:CDS |
| TATTTCTGGAGTTGATTTAT+GGG | 0.322741 | 8.2:-65266285 | MS.gene57501:CDS |
| TCTCCAATCCCATGGCTTCT+CGG | 0.327793 | 8.2:+65261565 | None:intergenic |
| ACTGGATGAACCCTGCCTTT+TGG | 0.331875 | 8.2:+65264994 | None:intergenic |
| ACTGGATGAACCCTGCCTTT+TGG | 0.331875 | 8.2:+65270653 | None:intergenic |
| GCTGCAATGTGCACGTTACT+AGG | 0.332410 | 8.2:+65262399 | None:intergenic |
| CTCCAATCCCATGGCTTCTC+GGG | 0.340831 | 8.2:+65261566 | None:intergenic |
| TCACCTAAGGGTGGTTCATT+TGG | 0.343574 | 8.2:+65269715 | None:intergenic |
| TGCACGAGAAGATGATGATT+TGG | 0.345812 | 8.2:-65271756 | MS.gene57501:CDS |
| CTTCAAAACTGACAAGCTTC+AGG | 0.348852 | 8.2:-65269632 | MS.gene57501:intron |
| AGATTTCCCTTGAACAATCT+TGG | 0.366156 | 8.2:+65261993 | None:intergenic |
| CACCTCTAGTTTGCTTCTGT+TGG | 0.374730 | 8.2:+65265753 | None:intergenic |
| TCTGAATGATGTTGCAGGTC+AGG | 0.374858 | 8.2:+65265031 | None:intergenic |
| TCTGAATGATGTTGCAGGTC+AGG | 0.374858 | 8.2:+65270690 | None:intergenic |
| TTCATAGTTCCTTCTAGAAC+GGG | 0.384606 | 8.2:+65262359 | None:intergenic |
| ATGAAGGTTGCGACGGATTC+CGG | 0.387215 | 8.2:+65274289 | None:intergenic |
| AGCGAAGCGAGTTGGATTAT+GGG | 0.389091 | 8.2:-65261600 | MS.gene57501:CDS |
| TTCTCTGATCTCCTTCTTCG+AGG | 0.391845 | 8.2:+65263667 | None:intergenic |
| TTCTCTGATCTCCTTCTTCG+AGG | 0.391845 | 8.2:+65266162 | None:intergenic |
| TTCTCTGATCTCCTTCTTCG+AGG | 0.391845 | 8.2:+65271927 | None:intergenic |
| GGTTGAACAGCTACTTCAAC+TGG | 0.393087 | 8.2:+65263085 | None:intergenic |
| TACTATTGCTGTTCGAATGC+CGG | 0.393746 | 8.2:-65269680 | MS.gene57501:CDS |
| TCCAATAAAATGTGCATTCA+CGG | 0.399173 | 8.2:+65272351 | None:intergenic |
| CTGTCCTTTCTCCAATCCCA+TGG | 0.425752 | 8.2:+65261557 | None:intergenic |
| TCAGTTGATAAGACAACAAC+AGG | 0.428917 | 8.2:-65264945 | MS.gene57501:intron |
| TCAGTTGATAAGACAACAAC+AGG | 0.428917 | 8.2:-65270604 | MS.gene57501:intron |
| TTGCAGGAATTAGAGAAAAC+AGG | 0.429475 | 8.2:-65269760 | MS.gene57501:intron |
| AGGCAGGGTTCATCCAGTTC+AGG | 0.432623 | 8.2:-65264989 | MS.gene57501:CDS |
| AGGCAGGGTTCATCCAGTTC+AGG | 0.432623 | 8.2:-65270648 | MS.gene57501:CDS |
| GATCAGTATCAACGTTTAGT+AGG | 0.434441 | 8.2:-65261946 | MS.gene57501:CDS |
| ATATGAAATACACACCTTGC+CGG | 0.439979 | 8.2:-65263032 | MS.gene57501:intron |
| TCTCGTGCAAAATGACTTTG+TGG | 0.442184 | 8.2:+65271770 | None:intergenic |
| AATGCTTCATTGAGCTCGTC+AGG | 0.450397 | 8.2:+65265118 | None:intergenic |
| AATGCTTCATTGAGCTCGTC+AGG | 0.450397 | 8.2:+65270777 | None:intergenic |
| GGGCAGAAGCCCGTTCTAGA+AGG | 0.452975 | 8.2:-65262368 | MS.gene57501:CDS |
| TGCTCCGGTGATTCGCATGA+AGG | 0.453051 | 8.2:+65274273 | None:intergenic |
| TATTTAGACTGCAGAGAAAG+AGG | 0.453895 | 8.2:-65265860 | MS.gene57501:intron |
| CGCGCCGGATTGAGCTATGC+AGG | 0.456474 | 8.2:-65272099 | MS.gene57501:CDS |
| AATTTAGACTGCAGAGAAAG+AGG | 0.466485 | 8.2:-65271626 | MS.gene57501:intron |
| ATCCCGAGAAGCCATGGGAT+TGG | 0.470020 | 8.2:-65261568 | MS.gene57501:CDS |
| GCTAAGGCCTACTTCATTCA+AGG | 0.476513 | 8.2:+65266324 | None:intergenic |
| TAAGGAATTGATGCTAAAGA+AGG | 0.478599 | 8.2:-65261808 | MS.gene57501:intron |
| AAAAGTATCGGATCCGACTA+AGG | 0.479370 | 8.2:-65262169 | MS.gene57501:intron |
| AGAAACACTCACAACTCTAT+AGG | 0.485284 | 8.2:+65264211 | None:intergenic |
| AGAAACACTCACAACTCTAT+AGG | 0.485284 | 8.2:+65267156 | None:intergenic |
| GGCGACGAACTCCGTTGCTC+CGG | 0.486871 | 8.2:+65274258 | None:intergenic |
| CTTCAGAGTAATCATAGTGT+GGG | 0.488279 | 8.2:+65272145 | None:intergenic |
| GAAGCCAGAGCGAAGCGAGT+TGG | 0.488533 | 8.2:-65261608 | MS.gene57501:CDS |
| GAACTGACCAAGATTGTTCA+AGG | 0.488734 | 8.2:-65262000 | MS.gene57501:CDS |
| GAAGCACTTGACTGAGCTAA+AGG | 0.490305 | 8.2:+65272003 | None:intergenic |
| GAAGCACTTGACTGAGCTAA+AGG | 0.493328 | 8.2:+65263743 | None:intergenic |
| GAAGCACTTGACTGAGCTAA+AGG | 0.493328 | 8.2:+65266238 | None:intergenic |
| ACATGAGCTTCGAGTAAAAG+AGG | 0.495126 | 8.2:-65265830 | MS.gene57501:CDS |
| CTTCATAGTTCCTTCTAGAA+CGG | 0.497762 | 8.2:+65262358 | None:intergenic |
| TAATCCAACTCGCTTCGCTC+TGG | 0.500251 | 8.2:+65261604 | None:intergenic |
| TGTTGCAGGTCAGGCAAAGA+TGG | 0.502286 | 8.2:+65265040 | None:intergenic |
| TGTTGCAGGTCAGGCAAAGA+TGG | 0.502286 | 8.2:+65270699 | None:intergenic |
| AGTGTTAATTCTCTCTCCCT+CGG | 0.502679 | 8.2:+65271540 | None:intergenic |
| CTTCCAAATGAACCACCCTT+AGG | 0.503208 | 8.2:-65269718 | MS.gene57501:CDS |
| AAGCCTCATTCTTGTTGCTA+AGG | 0.504811 | 8.2:+65266308 | None:intergenic |
| TGCACATTGCAGCCGTGCAT+AGG | 0.508473 | 8.2:-65262389 | MS.gene57501:CDS |
| ACGTGAGCTTCGAGCAAAAG+AGG | 0.510398 | 8.2:-65271596 | MS.gene57501:CDS |
| TGAGCTAAAGGGTAGTCATT+CGG | 0.512166 | 8.2:+65272015 | None:intergenic |
| TAGTTCTGGTCGTTTGTCGT+AGG | 0.512281 | 8.2:+65261764 | None:intergenic |
| CTCATGGTCGAGGATATTAT+GGG | 0.513615 | 8.2:-65272050 | MS.gene57501:CDS |
| AAATGCTGATCCCAAAAGGC+AGG | 0.513755 | 8.2:-65265005 | MS.gene57501:CDS |
| AAATGCTGATCCCAAAAGGC+AGG | 0.513755 | 8.2:-65270664 | MS.gene57501:CDS |
| AAGGAACTATGAAGAGGAAG+AGG | 0.513763 | 8.2:-65262349 | MS.gene57501:CDS |
| TAATAATTGAGATCCTGAAC+TGG | 0.517718 | 8.2:+65264976 | None:intergenic |
| TAATAATTGAGATCCTGAAC+TGG | 0.517718 | 8.2:+65270635 | None:intergenic |
| GCACATTGCAGCCGTGCATA+GGG | 0.522397 | 8.2:-65262388 | MS.gene57501:CDS |
| ATTTATGGAGCAGTGAAGCC+TGG | 0.523950 | 8.2:-65264236 | MS.gene57501:CDS |
| ATTTATGGAGCAGTGAAGCC+TGG | 0.523950 | 8.2:-65267181 | MS.gene57501:CDS |
| CGTTCACAACGACCACCGTC+CGG | 0.525938 | 8.2:+65269661 | None:intergenic |
| CTCAATGACGACACCGTCGC+CGG | 0.527227 | 8.2:-65274308 | None:intergenic |
| TGCTCATGCTTTATTAGCCG+AGG | 0.531346 | 8.2:-65265791 | MS.gene57501:CDS |
| TGCTCATGCTTTATTAGCCG+AGG | 0.531346 | 8.2:-65271557 | MS.gene57501:CDS |
| TGCAATAGAAGCCTCGAAGA+AGG | 0.533510 | 8.2:-65263678 | MS.gene57501:CDS |
| TGCAATAGAAGCCTCGAAGA+AGG | 0.533510 | 8.2:-65266173 | MS.gene57501:CDS |
| TGCAATAGAAGCCTCGAAGA+AGG | 0.533510 | 8.2:-65271938 | MS.gene57501:CDS |
| GAAGCCATGGGATTGGAGAA+AGG | 0.535032 | 8.2:-65261561 | MS.gene57501:CDS |
| AAGCACTTGACTGAGCTAAA+GGG | 0.535423 | 8.2:+65263744 | None:intergenic |
| AAGCACTTGACTGAGCTAAA+GGG | 0.535423 | 8.2:+65266239 | None:intergenic |
| AAGCACTTGACTGAGCTAAA+GGG | 0.535423 | 8.2:+65272004 | None:intergenic |
| GGGACCCGTGATGATTCTCT+AGG | 0.536509 | 8.2:+65262420 | None:intergenic |
| AGCACCTGCATAGCTCAATC+CGG | 0.540330 | 8.2:+65272095 | None:intergenic |
| GTTGCGACGGATTCCGGCGA+CGG | 0.540628 | 8.2:+65274295 | None:intergenic |
| CTGCAATGTGCACGTTACTA+GGG | 0.542697 | 8.2:+65262400 | None:intergenic |
| TGTTTGATGAGTACCTTAGT+CGG | 0.545511 | 8.2:+65262156 | None:intergenic |
| AAGGAATTGATGCTAAAGAA+GGG | 0.547387 | 8.2:-65261807 | MS.gene57501:CDS |
| CTCACAACTCTATAGGTGCC+AGG | 0.549128 | 8.2:+65264218 | None:intergenic |
| CTCACAACTCTATAGGTGCC+AGG | 0.549128 | 8.2:+65267163 | None:intergenic |
| CCTCCTACATCTTTACCTCA+TGG | 0.550484 | 8.2:-65263061 | MS.gene57501:CDS |
| TAATTTGATTCTTACCGGCA+AGG | 0.551993 | 8.2:+65263018 | None:intergenic |
| CGTTCAAAATGACTTTGTTG+AGG | 0.556063 | 8.2:+65263512 | None:intergenic |
| CGTTCAAAATGACTTTGTTG+AGG | 0.556063 | 8.2:+65266007 | None:intergenic |
| TATGCAGGTGCTGATACTAA+TGG | 0.559241 | 8.2:-65272084 | MS.gene57501:CDS |
| AAAGAGGAAAATGAAGTACT+TGG | 0.560824 | 8.2:-65271580 | MS.gene57501:CDS |
| AATGGAAGTTTATCATCTCA+TGG | 0.561022 | 8.2:-65272066 | MS.gene57501:CDS |
| ATACAATGTTAATGATAGAT+CGG | 0.562572 | 8.2:-65266350 | MS.gene57501:CDS |
| TAACATTGTATGCTCGTCGC+GGG | 0.563151 | 8.2:+65266362 | None:intergenic |
| GCAACCTTCATGCGAATCAC+CGG | 0.564620 | 8.2:-65274277 | MS.gene57501:CDS |
| ACTCCATGAGGTAAAGATGT+AGG | 0.574348 | 8.2:+65263058 | None:intergenic |
| GCTTCAGAGTAATCATAGTG+TGG | 0.576562 | 8.2:+65272144 | None:intergenic |
| AAAGAGGAAAGTGAAGTACT+TGG | 0.577505 | 8.2:-65265814 | MS.gene57501:CDS |
| CCAGAAAATGCAATGCCGTA+CGG | 0.581164 | 8.2:-65262039 | MS.gene57501:CDS |
| CATGCGAATCACCGGAGCAA+CGG | 0.585326 | 8.2:-65274269 | MS.gene57501:CDS |
| AGTTTATCATCTCATGGTCG+AGG | 0.585679 | 8.2:-65272060 | MS.gene57501:CDS |
| GGACCCGTGATGATTCTCTA+GGG | 0.596825 | 8.2:+65262421 | None:intergenic |
| AGGCCTTAGCAACAAGAATG+AGG | 0.602952 | 8.2:-65266311 | MS.gene57501:CDS |
| TGAGGTAAAGATGTAGGAGG+AGG | 0.604055 | 8.2:+65263064 | None:intergenic |
| TCGGCTACCTTGAATGAAGT+AGG | 0.608862 | 8.2:-65266331 | MS.gene57501:CDS |
| GCTCATGCTTTATTAGCCGA+GGG | 0.610195 | 8.2:-65265790 | MS.gene57501:CDS |
| GCTCATGCTTTATTAGCCGA+GGG | 0.610195 | 8.2:-65271556 | MS.gene57501:CDS |
| TGCTAAAGAAGGGTTTAGCA+TGG | 0.615254 | 8.2:-65261797 | MS.gene57501:CDS |
| ATTGCTGTTCGAATGCCGGA+CGG | 0.615798 | 8.2:-65269676 | MS.gene57501:CDS |
| CAAAACAACCAAAACCGCGC+CGG | 0.624749 | 8.2:-65272114 | MS.gene57501:CDS |
| CACAAACAGATTGTTGACGC+AGG | 0.630058 | 8.2:-65262321 | MS.gene57501:CDS |
| ACGGGCTTCTGCCCTATGCA+CGG | 0.632580 | 8.2:+65262377 | None:intergenic |
| CGTTCATGATGAAGATGCAG+AGG | 0.638826 | 8.2:-65263717 | MS.gene57501:CDS |
| CGTTCATGATGAAGATGCAG+AGG | 0.638826 | 8.2:-65266212 | MS.gene57501:CDS |
| GATGCAAAAGCAGTGGCAGA+TGG | 0.640006 | 8.2:-65262477 | MS.gene57501:CDS |
| CCATGAGGTAAAGATGTAGG+AGG | 0.640081 | 8.2:+65263061 | None:intergenic |
| AAAGCAGTGGCAGATGGTGA+TGG | 0.640689 | 8.2:-65262471 | MS.gene57501:CDS |
| GCTGTTCGAATGCCGGACGG+TGG | 0.643235 | 8.2:-65269673 | MS.gene57501:CDS |
| GATTCGCATGAAGGTTGCGA+CGG | 0.644285 | 8.2:+65274282 | None:intergenic |
| CACTAACAGAAGCAAACTAG+AGG | 0.648592 | 8.2:-65271521 | MS.gene57501:intron |
| AATGCTGATCCCAAAAGGCA+GGG | 0.648598 | 8.2:-65265004 | MS.gene57501:CDS |
| AATGCTGATCCCAAAAGGCA+GGG | 0.648598 | 8.2:-65270663 | MS.gene57501:CDS |
| TTCTAGAAGGAACTATGAAG+AGG | 0.652223 | 8.2:-65262355 | MS.gene57501:CDS |
| AACTGACCAAGATTGTTCAA+GGG | 0.653454 | 8.2:-65261999 | MS.gene57501:CDS |
| CAGACCCTAGAGAATCATCA+CGG | 0.653536 | 8.2:-65262425 | MS.gene57501:CDS |
| GATGATTCTATTTGAAAACG+AGG | 0.654761 | 8.2:-65262204 | MS.gene57501:CDS |
| ATTTCATATTGTACTCCATG+AGG | 0.657234 | 8.2:+65263046 | None:intergenic |
| CTAGGTTGATGCAAAAGCAG+TGG | 0.660141 | 8.2:-65262484 | MS.gene57501:intron |
| AGACCCTAGAGAATCATCAC+GGG | 0.670929 | 8.2:-65262424 | MS.gene57501:CDS |
| CACCAACAGAAGCAAACTAG+AGG | 0.674312 | 8.2:-65265755 | MS.gene57501:intron |
| TTAACATTGTATGCTCGTCG+CGG | 0.674332 | 8.2:+65266361 | None:intergenic |
| TTCAGAGTAATCATAGTGTG+GGG | 0.674899 | 8.2:+65272146 | None:intergenic |
| CTGCATAGCTCAATCCGGCG+CGG | 0.678864 | 8.2:+65272100 | None:intergenic |
| TCAACTGGAGTATGTGACAG+TGG | 0.679694 | 8.2:+65263100 | None:intergenic |
| TGTTCATGATGAAGATGCAG+AGG | 0.706670 | 8.2:-65271977 | MS.gene57501:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.2 | gene | 65261547 | 65274326 | 65261547 | ID=MS.gene57501 |
| chr8.2 | mRNA | 65261547 | 65274326 | 65261547 | ID=MS.gene57501.t1;Parent=MS.gene57501 |
| chr8.2 | exon | 65274243 | 65274326 | 65274243 | ID=MS.gene57501.t1.exon1;Parent=MS.gene57501.t1 |
| chr8.2 | CDS | 65274243 | 65274326 | 65274243 | ID=cds.MS.gene57501.t1;Parent=MS.gene57501.t1 |
| chr8.2 | exon | 65272340 | 65272398 | 65272340 | ID=MS.gene57501.t1.exon2;Parent=MS.gene57501.t1 |
| chr8.2 | CDS | 65272340 | 65272398 | 65272340 | ID=cds.MS.gene57501.t1;Parent=MS.gene57501.t1 |
| chr8.2 | exon | 65271903 | 65272197 | 65271903 | ID=MS.gene57501.t1.exon3;Parent=MS.gene57501.t1 |
| chr8.2 | CDS | 65271903 | 65272197 | 65271903 | ID=cds.MS.gene57501.t1;Parent=MS.gene57501.t1 |
| chr8.2 | exon | 65271730 | 65271813 | 65271730 | ID=MS.gene57501.t1.exon4;Parent=MS.gene57501.t1 |
| chr8.2 | CDS | 65271730 | 65271813 | 65271730 | ID=cds.MS.gene57501.t1;Parent=MS.gene57501.t1 |
| chr8.2 | exon | 65271522 | 65271641 | 65271522 | ID=MS.gene57501.t1.exon5;Parent=MS.gene57501.t1 |
| chr8.2 | CDS | 65271522 | 65271641 | 65271522 | ID=cds.MS.gene57501.t1;Parent=MS.gene57501.t1 |
| chr8.2 | exon | 65270605 | 65270814 | 65270605 | ID=MS.gene57501.t1.exon6;Parent=MS.gene57501.t1 |
| chr8.2 | CDS | 65270605 | 65270814 | 65270605 | ID=cds.MS.gene57501.t1;Parent=MS.gene57501.t1 |
| chr8.2 | exon | 65270409 | 65270528 | 65270409 | ID=MS.gene57501.t1.exon7;Parent=MS.gene57501.t1 |
| chr8.2 | CDS | 65270409 | 65270528 | 65270409 | ID=cds.MS.gene57501.t1;Parent=MS.gene57501.t1 |
| chr8.2 | exon | 65269633 | 65269776 | 65269633 | ID=MS.gene57501.t1.exon8;Parent=MS.gene57501.t1 |
| chr8.2 | CDS | 65269633 | 65269776 | 65269633 | ID=cds.MS.gene57501.t1;Parent=MS.gene57501.t1 |
| chr8.2 | exon | 65267168 | 65267224 | 65267168 | ID=MS.gene57501.t1.exon9;Parent=MS.gene57501.t1 |
| chr8.2 | CDS | 65267168 | 65267224 | 65267168 | ID=cds.MS.gene57501.t1;Parent=MS.gene57501.t1 |
| chr8.2 | exon | 65266138 | 65266395 | 65266138 | ID=MS.gene57501.t1.exon10;Parent=MS.gene57501.t1 |
| chr8.2 | CDS | 65266138 | 65266395 | 65266138 | ID=cds.MS.gene57501.t1;Parent=MS.gene57501.t1 |
| chr8.2 | exon | 65265964 | 65266047 | 65265964 | ID=MS.gene57501.t1.exon11;Parent=MS.gene57501.t1 |
| chr8.2 | CDS | 65265964 | 65266047 | 65265964 | ID=cds.MS.gene57501.t1;Parent=MS.gene57501.t1 |
| chr8.2 | exon | 65265756 | 65265875 | 65265756 | ID=MS.gene57501.t1.exon12;Parent=MS.gene57501.t1 |
| chr8.2 | CDS | 65265756 | 65265875 | 65265756 | ID=cds.MS.gene57501.t1;Parent=MS.gene57501.t1 |
| chr8.2 | exon | 65264946 | 65265155 | 65264946 | ID=MS.gene57501.t1.exon13;Parent=MS.gene57501.t1 |
| chr8.2 | CDS | 65264946 | 65265155 | 65264946 | ID=cds.MS.gene57501.t1;Parent=MS.gene57501.t1 |
| chr8.2 | exon | 65264750 | 65264869 | 65264750 | ID=MS.gene57501.t1.exon14;Parent=MS.gene57501.t1 |
| chr8.2 | CDS | 65264750 | 65264869 | 65264750 | ID=cds.MS.gene57501.t1;Parent=MS.gene57501.t1 |
| chr8.2 | exon | 65264223 | 65264279 | 65264223 | ID=MS.gene57501.t1.exon15;Parent=MS.gene57501.t1 |
| chr8.2 | CDS | 65264223 | 65264279 | 65264223 | ID=cds.MS.gene57501.t1;Parent=MS.gene57501.t1 |
| chr8.2 | exon | 65263643 | 65263774 | 65263643 | ID=MS.gene57501.t1.exon16;Parent=MS.gene57501.t1 |
| chr8.2 | CDS | 65263643 | 65263774 | 65263643 | ID=cds.MS.gene57501.t1;Parent=MS.gene57501.t1 |
| chr8.2 | exon | 65263469 | 65263552 | 65263469 | ID=MS.gene57501.t1.exon17;Parent=MS.gene57501.t1 |
| chr8.2 | CDS | 65263469 | 65263552 | 65263469 | ID=cds.MS.gene57501.t1;Parent=MS.gene57501.t1 |
| chr8.2 | exon | 65263033 | 65263146 | 65263033 | ID=MS.gene57501.t1.exon18;Parent=MS.gene57501.t1 |
| chr8.2 | CDS | 65263033 | 65263146 | 65263033 | ID=cds.MS.gene57501.t1;Parent=MS.gene57501.t1 |
| chr8.2 | exon | 65262315 | 65262502 | 65262315 | ID=MS.gene57501.t1.exon19;Parent=MS.gene57501.t1 |
| chr8.2 | CDS | 65262315 | 65262502 | 65262315 | ID=cds.MS.gene57501.t1;Parent=MS.gene57501.t1 |
| chr8.2 | exon | 65262170 | 65262226 | 65262170 | ID=MS.gene57501.t1.exon20;Parent=MS.gene57501.t1 |
| chr8.2 | CDS | 65262170 | 65262226 | 65262170 | ID=cds.MS.gene57501.t1;Parent=MS.gene57501.t1 |
| chr8.2 | exon | 65261915 | 65262074 | 65261915 | ID=MS.gene57501.t1.exon21;Parent=MS.gene57501.t1 |
| chr8.2 | CDS | 65261915 | 65262074 | 65261915 | ID=cds.MS.gene57501.t1;Parent=MS.gene57501.t1 |
| chr8.2 | exon | 65261758 | 65261826 | 65261758 | ID=MS.gene57501.t1.exon22;Parent=MS.gene57501.t1 |
| chr8.2 | CDS | 65261758 | 65261826 | 65261758 | ID=cds.MS.gene57501.t1;Parent=MS.gene57501.t1 |
| chr8.2 | exon | 65261547 | 65261639 | 65261547 | ID=MS.gene57501.t1.exon23;Parent=MS.gene57501.t1 |
| chr8.2 | CDS | 65261547 | 65261639 | 65261547 | ID=cds.MS.gene57501.t1;Parent=MS.gene57501.t1 |
| Gene Sequence |
| Protein sequence |
