Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene57644.t1 | XP_013458478.1 | 79 | 257 | 54 | 0 | 1 | 257 | 10 | 266 | 1.40E-106 | 396 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene57644.t1 | A0A072URS5 | 79.0 | 257 | 54 | 0 | 1 | 257 | 10 | 266 | 9.8e-107 | 396.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050559 | MS.gene57644 | 0.801974 | 6.99E-49 | -1.69E-46 |
| MS.gene050561 | MS.gene57644 | 0.805107 | 1.57E-49 | -1.69E-46 |
| MS.gene051859 | MS.gene57644 | 0.965979 | 2.60E-125 | -1.69E-46 |
| MS.gene053998 | MS.gene57644 | 0.803182 | 3.94E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 55 sgRNAs with CRISPR-Local
Find 162 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTGCAAAGGGACAAGTTTA+AGG | 0.179174 | 8.3:-4369262 | None:intergenic |
| AGTGAAGGTTCATTTGAATT+TGG | 0.199714 | 8.3:-4371573 | MS.gene57644:CDS |
| CGCTTTGACTTCACTGGAAA+TGG | 0.200683 | 8.3:-4371894 | MS.gene57644:CDS |
| CGTAGAGTTATGGCAATTAT+TGG | 0.216683 | 8.3:-4371489 | MS.gene57644:CDS |
| CATTTGAATTTGGCAACTAT+TGG | 0.312331 | 8.3:-4371563 | MS.gene57644:CDS |
| ATCATAATACCCAACAAGTA+TGG | 0.316741 | 8.3:-4372198 | MS.gene57644:CDS |
| GCATAGGATAACAATCTCTT+TGG | 0.339030 | 8.3:+4372140 | None:intergenic |
| GACAGGTTCCTTACTGTTCA+TGG | 0.397774 | 8.3:-4369439 | MS.gene57644:intron |
| GTAGAGTTATGGCAATTATT+GGG | 0.428640 | 8.3:-4371488 | MS.gene57644:CDS |
| AGTTTATTTCCATACTTGTT+GGG | 0.428920 | 8.3:+4372189 | None:intergenic |
| TCTTTCCGCTTTGACTTCAC+TGG | 0.437314 | 8.3:-4371900 | MS.gene57644:CDS |
| TAGTTTATTTCCATACTTGT+TGG | 0.440588 | 8.3:+4372188 | None:intergenic |
| AACTCAAGTGCGTCTCCAAC+GGG | 0.443167 | 8.3:+4369397 | None:intergenic |
| TGTTTCCAAGACGATCTTCA+AGG | 0.446327 | 8.3:+4370640 | None:intergenic |
| AAAACAGTTGCCAACCTCTC+TGG | 0.452508 | 8.3:-4370684 | MS.gene57644:CDS |
| TGCATTCTTTGTCAATCTGC+AGG | 0.457468 | 8.3:+4370057 | None:intergenic |
| ACGATATGTAACTTGTGATT+CGG | 0.464998 | 8.3:+4369361 | None:intergenic |
| TGAAGCAAACCGTAGAGTTA+TGG | 0.474267 | 8.3:-4371499 | MS.gene57644:CDS |
| GCTTTGACTTCACTGGAAAT+GGG | 0.474450 | 8.3:-4371893 | MS.gene57644:intron |
| CTCTGGTCGCTATGATCTAA+AGG | 0.480670 | 8.3:-4370667 | MS.gene57644:CDS |
| TTGAATTTGGCAACTATTGG+AGG | 0.482147 | 8.3:-4371560 | MS.gene57644:CDS |
| ATTGAGTTGAAGACTAAGTC+AGG | 0.483398 | 8.3:-4370585 | MS.gene57644:intron |
| AAGTATGGAAATAAACTAGT+AGG | 0.483546 | 8.3:-4372183 | MS.gene57644:CDS |
| GCAATTATTGGGCACAGTAA+AGG | 0.484866 | 8.3:-4371477 | MS.gene57644:intron |
| TTGGAGAGAATCAGAAAGGA+AGG | 0.500613 | 8.3:-4370612 | MS.gene57644:CDS |
| CATAACCGAGGAAAGCTTGA+AGG | 0.507061 | 8.3:-4370111 | MS.gene57644:CDS |
| CAATAATTGCCATAACTCTA+CGG | 0.510312 | 8.3:+4371490 | None:intergenic |
| ATCATAGCGACCAGAGAGGT+TGG | 0.518319 | 8.3:+4370674 | None:intergenic |
| GTAGGCAAATTACATGAAGC+TGG | 0.523470 | 8.3:-4372165 | MS.gene57644:CDS |
| TCGATCCTTCAAGCTTTCCT+CGG | 0.523491 | 8.3:+4370106 | None:intergenic |
| ATCAGAGAAACTAACCTTGG+AGG | 0.532587 | 8.3:+4372104 | None:intergenic |
| CCACGGTCTTCGAGCCTCCA+AGG | 0.543850 | 8.3:-4372118 | MS.gene57644:intron |
| CTAAATGCTCAGTATATACA+TGG | 0.545107 | 8.3:+4369326 | None:intergenic |
| GCAGGCCTTGAAGATCGTCT+TGG | 0.551855 | 8.3:-4370645 | MS.gene57644:CDS |
| AGCTGAGTTAGCTTCAATTG+TGG | 0.563562 | 8.3:-4369305 | MS.gene57644:CDS |
| GAACTCAAGTGCGTCTCCAA+CGG | 0.564779 | 8.3:+4369396 | None:intergenic |
| TGAATTTGGCAACTATTGGA+GGG | 0.566972 | 8.3:-4371559 | MS.gene57644:CDS |
| AGGCTCGAAGACCGTGGCAT+AGG | 0.574101 | 8.3:+4372124 | None:intergenic |
| CACAAGTTACATATCGTCAA+AGG | 0.581698 | 8.3:-4369355 | MS.gene57644:CDS |
| CCGCGTCACCATGAACAGTA+AGG | 0.586789 | 8.3:+4369431 | None:intergenic |
| GGTCGCTATGATCTAAAGGC+AGG | 0.588996 | 8.3:-4370663 | MS.gene57644:CDS |
| GCTGCTGCTCTAGATAATGC+AGG | 0.589211 | 8.3:-4371930 | MS.gene57644:CDS |
| TTCTCTTCCAGGGAAAGTGA+AGG | 0.589843 | 8.3:-4371588 | MS.gene57644:intron |
| TGGAGAGAATCAGAAAGGAA+GGG | 0.590267 | 8.3:-4370611 | MS.gene57644:CDS |
| TGCAGATTGACAAAGAATGC+AGG | 0.592169 | 8.3:-4370055 | MS.gene57644:intron |
| TATGTAACTTGTGATTCGGT+AGG | 0.596450 | 8.3:+4369365 | None:intergenic |
| CCTTACTGTTCATGGTGACG+CGG | 0.622022 | 8.3:-4369431 | MS.gene57644:CDS |
| TCTTGAGGCAGGAGCTAATG+TGG | 0.631493 | 8.3:-4370739 | MS.gene57644:intron |
| GAGATTGTTATCCTATGCCA+CGG | 0.643213 | 8.3:-4372135 | MS.gene57644:CDS |
| GCGGACACAATAATTCCCGT+TGG | 0.651618 | 8.3:-4369412 | MS.gene57644:CDS |
| ATTTGGCAACTATTGGAGGG+AGG | 0.660334 | 8.3:-4371556 | MS.gene57644:CDS |
| CCTTGGAGGCTCGAAGACCG+TGG | 0.673058 | 8.3:+4372118 | None:intergenic |
| CATTTCCAGTGAAGTCAAAG+CGG | 0.692758 | 8.3:+4371895 | None:intergenic |
| TGTTGATTATCGCATAACCG+AGG | 0.726198 | 8.3:-4370123 | MS.gene57644:CDS |
| TTAGATCATAGCGACCAGAG+AGG | 0.760661 | 8.3:+4370670 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAATAAGTTATAACTTATA+TGG | + | chr8.3:4371008-4371027 | None:intergenic | 10.0% |
| !!! | AACTATTTTCTTAAAAAATT+TGG | - | chr8.3:4371134-4371153 | MS.gene57644:intron | 10.0% |
| !!! | AGTTATGATAATTTTTTTAA+TGG | - | chr8.3:4371961-4371980 | MS.gene57644:intron | 10.0% |
| !! | AATAGAAAATTTACAACAAA+TGG | - | chr8.3:4369751-4369770 | MS.gene57644:intron | 15.0% |
| !! | ATAGAAAATTTACAACAAAT+GGG | - | chr8.3:4369752-4369771 | MS.gene57644:intron | 15.0% |
| !! | GATATTATTTAATGAAGTTA+TGG | - | chr8.3:4371989-4372008 | MS.gene57644:intron | 15.0% |
| !!! | GTTTTTAATATTCATAAGTA+TGG | + | chr8.3:4370094-4370113 | None:intergenic | 15.0% |
| !!! | TATATATTTTATGCAAAACT+TGG | - | chr8.3:4369655-4369674 | MS.gene57644:intron | 15.0% |
| !! | AGAAGAAAATAGATTTATAG+AGG | + | chr8.3:4371596-4371615 | None:intergenic | 20.0% |
| !! | ATAGTGAAATATAATGAACT+TGG | + | chr8.3:4370445-4370464 | None:intergenic | 20.0% |
| !! | ATATAGAGTAAAACAAATCA+AGG | + | chr8.3:4371095-4371114 | None:intergenic | 20.0% |
| !! | ATTGCAAAAATTTATACAGT+GGG | - | chr8.3:4371519-4371538 | MS.gene57644:CDS | 20.0% |
| !! | CAATGTATTTATCTATGAAT+GGG | + | chr8.3:4369440-4369459 | None:intergenic | 20.0% |
| !! | TAGAAAATTTACAACAAATG+GGG | - | chr8.3:4369753-4369772 | MS.gene57644:intron | 20.0% |
| !! | TATGTAATATGAACTTTGAA+AGG | - | chr8.3:4371727-4371746 | MS.gene57644:intron | 20.0% |
| !! | TCAATGTATTTATCTATGAA+TGG | + | chr8.3:4369441-4369460 | None:intergenic | 20.0% |
| !! | TTTCTCTTATTATTTAGTGA+AGG | - | chr8.3:4371849-4371868 | MS.gene57644:intron | 20.0% |
| !!! | ATGTAATATGAACTTTGAAA+GGG | - | chr8.3:4371728-4371747 | MS.gene57644:intron | 20.0% |
| !!! | ATGTGTATATTGTTTTTTTG+GGG | + | chr8.3:4370418-4370437 | None:intergenic | 20.0% |
| !!! | GATGTGTATATTGTTTTTTT+GGG | + | chr8.3:4370419-4370438 | None:intergenic | 20.0% |
| !!! | TCTATTGATTTATGCTTTTT+GGG | - | chr8.3:4370593-4370612 | MS.gene57644:CDS | 20.0% |
| !!! | TGATGTGTATATTGTTTTTT+TGG | + | chr8.3:4370420-4370439 | None:intergenic | 20.0% |
| !!! | TGTAAATTTTCTATTGTGAA+AGG | + | chr8.3:4369746-4369765 | None:intergenic | 20.0% |
| !!! | TTCTATTGATTTATGCTTTT+TGG | - | chr8.3:4370592-4370611 | MS.gene57644:CDS | 20.0% |
| !!! | TTTTGTTTTGTTTCAAAACT+TGG | + | chr8.3:4371674-4371693 | None:intergenic | 20.0% |
| ! | AACATCCAACAGTTAATAAT+GGG | - | chr8.3:4370483-4370502 | MS.gene57644:intron | 25.0% |
| ! | AACTTGGTTTCTATTTGATA+AGG | - | chr8.3:4369671-4369690 | MS.gene57644:intron | 25.0% |
| ! | AAGCAATTAAACAATACTAG+TGG | + | chr8.3:4369849-4369868 | None:intergenic | 25.0% |
| ! | AAGTATGGAAATAAACTAGT+AGG | - | chr8.3:4369296-4369315 | MS.gene57644:CDS | 25.0% |
| ! | AATTTAGGTATTTGAATGCA+TGG | + | chr8.3:4370939-4370958 | None:intergenic | 25.0% |
| ! | ACTTGGTTTCTATTTGATAA+GGG | - | chr8.3:4369672-4369691 | MS.gene57644:intron | 25.0% |
| ! | AGTTTATTTCCATACTTGTT+GGG | + | chr8.3:4369293-4369312 | None:intergenic | 25.0% |
| ! | ATATTCGTAATTTAGCTGAT+CGG | + | chr8.3:4370135-4370154 | None:intergenic | 25.0% |
| ! | ATGCATTCAAATACCTAAAT+TGG | - | chr8.3:4370938-4370957 | MS.gene57644:intron | 25.0% |
| ! | CATTGCAAAAATTTATACAG+TGG | - | chr8.3:4371518-4371537 | MS.gene57644:CDS | 25.0% |
| ! | TAACATCCAACAGTTAATAA+TGG | - | chr8.3:4370482-4370501 | MS.gene57644:intron | 25.0% |
| ! | TACTCTATATTCTTGTTCTA+AGG | - | chr8.3:4371105-4371124 | MS.gene57644:intron | 25.0% |
| ! | TAGTTTATTTCCATACTTGT+TGG | + | chr8.3:4369294-4369313 | None:intergenic | 25.0% |
| ! | TGTTTCACTTTCAAAAAAAG+AGG | + | chr8.3:4371231-4371250 | None:intergenic | 25.0% |
| ! | TTTGGGCTTCATTATAAAAT+GGG | - | chr8.3:4370610-4370629 | MS.gene57644:CDS | 25.0% |
| !! | AATTGTGGCAAATTTTATGA+AGG | - | chr8.3:4372189-4372208 | MS.gene57644:CDS | 25.0% |
| !! | GATTATGTTTTCCAATATCT+AGG | - | chr8.3:4369503-4369522 | MS.gene57644:intron | 25.0% |
| !! | TAAGTATGGACTAAAATGTA+TGG | + | chr8.3:4370080-4370099 | None:intergenic | 25.0% |
| !! | TTACGTTTTCAATGTTACAT+TGG | - | chr8.3:4370373-4370392 | MS.gene57644:intron | 25.0% |
| !! | TTTGAAAGGGTAAGAATTTT+GGG | - | chr8.3:4371741-4371760 | MS.gene57644:intron | 25.0% |
| !! | TTTTGGGCTTCATTATAAAA+TGG | - | chr8.3:4370609-4370628 | MS.gene57644:CDS | 25.0% |
| !!! | GTATTATGATTTTTTGCTGT+TGG | + | chr8.3:4369271-4369290 | None:intergenic | 25.0% |
| !!! | TACTTGTTTTCAGTTTTTGA+GGG | - | chr8.3:4371305-4371324 | MS.gene57644:intron | 25.0% |
| !!! | TGTGTATATTGTTTTTTTGG+GGG | + | chr8.3:4370417-4370436 | None:intergenic | 25.0% |
| !!! | TTACTTGTTTTCAGTTTTTG+AGG | - | chr8.3:4371304-4371323 | MS.gene57644:intron | 25.0% |
| AAAACTATTTGCAGGATGAT+AGG | + | chr8.3:4370179-4370198 | None:intergenic | 30.0% | |
| AAAATTTACAACAAATGGGG+TGG | - | chr8.3:4369756-4369775 | MS.gene57644:intron | 30.0% | |
| AATATCAGAGAAACTAACCT+TGG | + | chr8.3:4369381-4369400 | None:intergenic | 30.0% | |
| ACATTCTTCTACTCCAATTT+AGG | + | chr8.3:4370954-4370973 | None:intergenic | 30.0% | |
| ACTCTTGTAATGAAGATGAA+AGG | + | chr8.3:4371496-4371515 | None:intergenic | 30.0% | |
| AGTGAAGGTTCATTTGAATT+TGG | - | chr8.3:4369906-4369925 | MS.gene57644:intron | 30.0% | |
| ATCATAATACCCAACAAGTA+TGG | - | chr8.3:4369281-4369300 | MS.gene57644:CDS | 30.0% | |
| CAATAATTGCCATAACTCTA+CGG | + | chr8.3:4369992-4370011 | None:intergenic | 30.0% | |
| CATTTGAATTTGGCAACTAT+TGG | - | chr8.3:4369916-4369935 | MS.gene57644:intron | 30.0% | |
| CTAAATGCTCAGTATATACA+TGG | + | chr8.3:4372156-4372175 | None:intergenic | 30.0% | |
| CTCTTGTAATGAAGATGAAA+GGG | + | chr8.3:4371495-4371514 | None:intergenic | 30.0% | |
| GAAATGCTTTCAAGAAATTC+AGG | - | chr8.3:4370980-4370999 | MS.gene57644:intron | 30.0% | |
| GCATCATTAAAACTATTTGC+AGG | + | chr8.3:4370187-4370206 | None:intergenic | 30.0% | |
| GTAACATTGAAAACGTAAAG+CGG | + | chr8.3:4370371-4370390 | None:intergenic | 30.0% | |
| GTAATGTTCCAATGTTTCTT+AGG | - | chr8.3:4370675-4370694 | MS.gene57644:CDS | 30.0% | |
| GTAGAGTTATGGCAATTATT+GGG | - | chr8.3:4369991-4370010 | MS.gene57644:intron | 30.0% | |
| TTCATCCATTTGCAAAACTT+AGG | - | chr8.3:4369809-4369828 | MS.gene57644:intron | 30.0% | |
| ! | AAAAGTTCTGACAAGATCAA+TGG | + | chr8.3:4371704-4371723 | None:intergenic | 30.0% |
| ! | ACGATATGTAACTTGTGATT+CGG | + | chr8.3:4372121-4372140 | None:intergenic | 30.0% |
| ! | ATGAAGGAAACTTTTGCAAA+GGG | - | chr8.3:4372205-4372224 | MS.gene57644:CDS | 30.0% |
| ! | TATGAAGGAAACTTTTGCAA+AGG | - | chr8.3:4372204-4372223 | MS.gene57644:CDS | 30.0% |
| ! | TCACATCAATCTTCTTTTGT+AGG | - | chr8.3:4371330-4371349 | MS.gene57644:intron | 30.0% |
| !! | CTTTGAAAGGGTAAGAATTT+TGG | - | chr8.3:4371740-4371759 | MS.gene57644:intron | 30.0% |
| !! | TGAATTGTTTCTGTATCTTG+AGG | - | chr8.3:4370725-4370744 | MS.gene57644:CDS | 30.0% |
| !! | TTGAGCTTGTTATTTATTGC+AGG | - | chr8.3:4371037-4371056 | MS.gene57644:intron | 30.0% |
| !!! | CAAATAGTTTTAATGATGCG+TGG | - | chr8.3:4370188-4370207 | MS.gene57644:intron | 30.0% |
| !!! | CTGATGATGTCTTTTTTTCT+GGG | + | chr8.3:4369624-4369643 | None:intergenic | 30.0% |
| !!! | TATGATTTTTTGCTGTTGGA+TGG | + | chr8.3:4369267-4369286 | None:intergenic | 30.0% |
| AAAGGTTTGTCGTGTTACAA+TGG | - | chr8.3:4370020-4370039 | MS.gene57644:intron | 35.0% | |
| ACGTATTATGAGACGTGTTA+TGG | + | chr8.3:4372020-4372039 | None:intergenic | 35.0% | |
| ATGAAAGGGTGAAACTGTAA+AGG | + | chr8.3:4371481-4371500 | None:intergenic | 35.0% | |
| CACAAGTTACATATCGTCAA+AGG | - | chr8.3:4372124-4372143 | MS.gene57644:CDS | 35.0% | |
| CCAGAAAAAAAGACATCATC+AGG | - | chr8.3:4369622-4369641 | MS.gene57644:intron | 35.0% | |
| CGTAGAGTTATGGCAATTAT+TGG | - | chr8.3:4369990-4370009 | MS.gene57644:intron | 35.0% | |
| GAATGCCCATTATTAACTGT+TGG | + | chr8.3:4370491-4370510 | None:intergenic | 35.0% | |
| GAGTAAAACAAATCAAGGCA+AGG | + | chr8.3:4371090-4371109 | None:intergenic | 35.0% | |
| GATACTGTCTTCCTAGATAT+TGG | + | chr8.3:4369517-4369536 | None:intergenic | 35.0% | |
| GATGCTAAGAATGATGTTGT+TGG | + | chr8.3:4371195-4371214 | None:intergenic | 35.0% | |
| GCATAGGATAACAATCTCTT+TGG | + | chr8.3:4369342-4369361 | None:intergenic | 35.0% | |
| GCTAATGTGACACTCAATAA+GGG | + | chr8.3:4370314-4370333 | None:intergenic | 35.0% | |
| TCTGACAAGATCAATGGATA+AGG | + | chr8.3:4371698-4371717 | None:intergenic | 35.0% | |
| TGAATTTGGCAACTATTGGA+GGG | - | chr8.3:4369920-4369939 | MS.gene57644:intron | 35.0% | |
| TGCATGGATGATTAAATGCA+CGG | + | chr8.3:4370923-4370942 | None:intergenic | 35.0% | |
| TGCTAATGTGACACTCAATA+AGG | + | chr8.3:4370315-4370334 | None:intergenic | 35.0% | |
| TTGAATTTGGCAACTATTGG+AGG | - | chr8.3:4369919-4369938 | MS.gene57644:intron | 35.0% | |
| ! | GATAGCCTAAGTTTTGCAAA+TGG | + | chr8.3:4369817-4369836 | None:intergenic | 35.0% |
| ! | TCGTCTTGGAAACAACTTTT+TGG | - | chr8.3:4370848-4370867 | MS.gene57644:intron | 35.0% |
| !! | ATTGAGTTGAAGACTAAGTC+AGG | - | chr8.3:4370894-4370913 | MS.gene57644:intron | 35.0% |
| !! | CTTTTTGGAGAGAATCAGAA+AGG | - | chr8.3:4370863-4370882 | MS.gene57644:intron | 35.0% |
| !! | TATGTAACTTGTGATTCGGT+AGG | + | chr8.3:4372117-4372136 | None:intergenic | 35.0% |
| !!! | CCTGATGATGTCTTTTTTTC+TGG | + | chr8.3:4369625-4369644 | None:intergenic | 35.0% |
| AAATGAACCTTCACTTTCCC+TGG | + | chr8.3:4369901-4369920 | None:intergenic | 40.0% | |
| AACAAATCAAGGCAAGGCTA+TGG | + | chr8.3:4371084-4371103 | None:intergenic | 40.0% | |
| ACGCACTTCCTAAGAAACAT+TGG | + | chr8.3:4370686-4370705 | None:intergenic | 40.0% | |
| AGTGAACGGTGAAAGTTCTT+GGG | - | chr8.3:4371545-4371564 | MS.gene57644:CDS | 40.0% | |
| ATCAGAGAAACTAACCTTGG+AGG | + | chr8.3:4369378-4369397 | None:intergenic | 40.0% | |
| ATGTGACACTCAATAAGGGA+CGG | + | chr8.3:4370310-4370329 | None:intergenic | 40.0% | |
| ATTGACAAAGAATGCAGGTG+TGG | - | chr8.3:4371429-4371448 | MS.gene57644:intron | 40.0% | |
| CATTTCCAGTGAAGTCAAAG+CGG | + | chr8.3:4369587-4369606 | None:intergenic | 40.0% | |
| GAGATTGTTATCCTATGCCA+CGG | - | chr8.3:4369344-4369363 | MS.gene57644:CDS | 40.0% | |
| GCAATTATTGGGCACAGTAA+AGG | - | chr8.3:4370002-4370021 | MS.gene57644:intron | 40.0% | |
| GTAGGCAAATTACATGAAGC+TGG | - | chr8.3:4369314-4369333 | MS.gene57644:CDS | 40.0% | |
| GTGGCAAACTGGCAATATAT+AGG | - | chr8.3:4370207-4370226 | MS.gene57644:intron | 40.0% | |
| TATACAGTGGGATCAGTGAA+CGG | - | chr8.3:4371531-4371550 | MS.gene57644:CDS | 40.0% | |
| TGAAGCAAACCGTAGAGTTA+TGG | - | chr8.3:4369980-4369999 | MS.gene57644:intron | 40.0% | |
| TGCAGATTGACAAAGAATGC+AGG | - | chr8.3:4371424-4371443 | MS.gene57644:intron | 40.0% | |
| TGCATTCTTTGTCAATCTGC+AGG | + | chr8.3:4371425-4371444 | None:intergenic | 40.0% | |
| TGGAGAGAATCAGAAAGGAA+GGG | - | chr8.3:4370868-4370887 | MS.gene57644:intron | 40.0% | |
| TGTTTCCAAGACGATCTTCA+AGG | + | chr8.3:4370842-4370861 | None:intergenic | 40.0% | |
| TTGAAGACTCAGCAAGTATC+TGG | + | chr8.3:4370057-4370076 | None:intergenic | 40.0% | |
| TTGACAAAGAATGCAGGTGT+GGG | - | chr8.3:4371430-4371449 | MS.gene57644:intron | 40.0% | |
| TTGGAGAGAATCAGAAAGGA+AGG | - | chr8.3:4370867-4370886 | MS.gene57644:intron | 40.0% | |
| TTTAATGATGCGTGGCAAAC+TGG | - | chr8.3:4370196-4370215 | MS.gene57644:intron | 40.0% | |
| ! | AGCTGAGTTAGCTTCAATTG+TGG | - | chr8.3:4372174-4372193 | MS.gene57644:CDS | 40.0% |
| ! | ATGTTTCTTAGGAAGTGCGT+AGG | - | chr8.3:4370686-4370705 | MS.gene57644:CDS | 40.0% |
| ! | GCTTTGACTTCACTGGAAAT+GGG | - | chr8.3:4369586-4369605 | MS.gene57644:intron | 40.0% |
| ! | GTCTGTGAATCGATGTCTTT+TGG | - | chr8.3:4370279-4370298 | MS.gene57644:intron | 40.0% |
| ! | TGTTGATTATCGCATAACCG+AGG | - | chr8.3:4371356-4371375 | MS.gene57644:intron | 40.0% |
| !! | TTGTTTCTGTATCTTGAGGC+AGG | - | chr8.3:4370729-4370748 | MS.gene57644:CDS | 40.0% |
| !!! | AGCTTTTGAGTTTCTCTTCC+AGG | - | chr8.3:4369880-4369899 | MS.gene57644:intron | 40.0% |
| !!! | GCTTTTGAGTTTCTCTTCCA+GGG | - | chr8.3:4369881-4369900 | MS.gene57644:intron | 40.0% |
| !!! | TTGTTTTTTTGGGGGAGAAC+TGG | + | chr8.3:4370409-4370428 | None:intergenic | 40.0% |
| AAAACAGTTGCCAACCTCTC+TGG | - | chr8.3:4370795-4370814 | MS.gene57644:intron | 45.0% | |
| AAACCCTGACTTCTGTCATC+AGG | + | chr8.3:4369791-4369810 | None:intergenic | 45.0% | |
| AGGGTGAAACTGTAAAGGAG+AGG | + | chr8.3:4371476-4371495 | None:intergenic | 45.0% | |
| ATTTGGCAACTATTGGAGGG+AGG | - | chr8.3:4369923-4369942 | MS.gene57644:intron | 45.0% | |
| CACGTCTCATAATACGTGAC+AGG | - | chr8.3:4372023-4372042 | MS.gene57644:intron | 45.0% | |
| CAGTGAACGGTGAAAGTTCT+TGG | - | chr8.3:4371544-4371563 | MS.gene57644:CDS | 45.0% | |
| CATAACCGAGGAAAGCTTGA+AGG | - | chr8.3:4371368-4371387 | MS.gene57644:intron | 45.0% | |
| CTCTGGTCGCTATGATCTAA+AGG | - | chr8.3:4370812-4370831 | MS.gene57644:intron | 45.0% | |
| GAAACAGCTCATACACGAGA+AGG | - | chr8.3:4371245-4371264 | MS.gene57644:intron | 45.0% | |
| GACAGGTTCCTTACTGTTCA+TGG | - | chr8.3:4372040-4372059 | MS.gene57644:intron | 45.0% | |
| TCGATCCTTCAAGCTTTCCT+CGG | + | chr8.3:4371376-4371395 | None:intergenic | 45.0% | |
| TGTCCTGATGACAGAAGTCA+GGG | - | chr8.3:4369785-4369804 | MS.gene57644:intron | 45.0% | |
| TTAGATCATAGCGACCAGAG+AGG | + | chr8.3:4370812-4370831 | None:intergenic | 45.0% | |
| TTCTCTTCCAGGGAAAGTGA+AGG | - | chr8.3:4369891-4369910 | MS.gene57644:intron | 45.0% | |
| TTGTCCTGATGACAGAAGTC+AGG | - | chr8.3:4369784-4369803 | MS.gene57644:intron | 45.0% | |
| ! | CGCTTTGACTTCACTGGAAA+TGG | - | chr8.3:4369585-4369604 | MS.gene57644:intron | 45.0% |
| ! | TCTTTCCGCTTTGACTTCAC+TGG | - | chr8.3:4369579-4369598 | MS.gene57644:intron | 45.0% |
| AACTCAAGTGCGTCTCCAAC+GGG | + | chr8.3:4372085-4372104 | None:intergenic | 50.0% | |
| ATCATAGCGACCAGAGAGGT+TGG | + | chr8.3:4370808-4370827 | None:intergenic | 50.0% | |
| GAACTCAAGTGCGTCTCCAA+CGG | + | chr8.3:4372086-4372105 | None:intergenic | 50.0% | |
| GCGGACACAATAATTCCCGT+TGG | - | chr8.3:4372067-4372086 | MS.gene57644:intron | 50.0% | |
| GGTCGCTATGATCTAAAGGC+AGG | - | chr8.3:4370816-4370835 | MS.gene57644:intron | 50.0% | |
| TCTTGAGGCAGGAGCTAATG+TGG | - | chr8.3:4370740-4370759 | MS.gene57644:intron | 50.0% | |
| ! | CCTTACTGTTCATGGTGACG+CGG | - | chr8.3:4372048-4372067 | MS.gene57644:intron | 50.0% |
| ! | GCTGCTGCTCTAGATAATGC+AGG | - | chr8.3:4369549-4369568 | MS.gene57644:intron | 50.0% |
| CCGCGTCACCATGAACAGTA+AGG | + | chr8.3:4372051-4372070 | None:intergenic | 55.0% | |
| GCAGGCCTTGAAGATCGTCT+TGG | - | chr8.3:4370834-4370853 | MS.gene57644:intron | 55.0% | |
| AGGCTCGAAGACCGTGGCAT+AGG | + | chr8.3:4369358-4369377 | None:intergenic | 60.0% | |
| CCACGGTCTTCGAGCCTCCA+AGG | - | chr8.3:4369361-4369380 | MS.gene57644:CDS | 65.0% | |
| CCTTGGAGGCTCGAAGACCG+TGG | + | chr8.3:4369364-4369383 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.3 | gene | 4369264 | 4372237 | 4369264 | ID=MS.gene57644 |
| chr8.3 | mRNA | 4369264 | 4372237 | 4369264 | ID=MS.gene57644.t1;Parent=MS.gene57644 |
| chr8.3 | exon | 4372119 | 4372237 | 4372119 | ID=MS.gene57644.t1.exon1;Parent=MS.gene57644.t1 |
| chr8.3 | CDS | 4372119 | 4372237 | 4372119 | ID=cds.MS.gene57644.t1;Parent=MS.gene57644.t1 |
| chr8.3 | exon | 4371894 | 4371976 | 4371894 | ID=MS.gene57644.t1.exon2;Parent=MS.gene57644.t1 |
| chr8.3 | CDS | 4371894 | 4371976 | 4371894 | ID=cds.MS.gene57644.t1;Parent=MS.gene57644.t1 |
| chr8.3 | exon | 4371478 | 4371599 | 4371478 | ID=MS.gene57644.t1.exon3;Parent=MS.gene57644.t1 |
| chr8.3 | CDS | 4371478 | 4371599 | 4371478 | ID=cds.MS.gene57644.t1;Parent=MS.gene57644.t1 |
| chr8.3 | exon | 4370586 | 4370750 | 4370586 | ID=MS.gene57644.t1.exon4;Parent=MS.gene57644.t1 |
| chr8.3 | CDS | 4370586 | 4370750 | 4370586 | ID=cds.MS.gene57644.t1;Parent=MS.gene57644.t1 |
| chr8.3 | exon | 4370056 | 4370149 | 4370056 | ID=MS.gene57644.t1.exon5;Parent=MS.gene57644.t1 |
| chr8.3 | CDS | 4370056 | 4370149 | 4370056 | ID=cds.MS.gene57644.t1;Parent=MS.gene57644.t1 |
| chr8.3 | exon | 4369264 | 4369456 | 4369264 | ID=MS.gene57644.t1.exon6;Parent=MS.gene57644.t1 |
| chr8.3 | CDS | 4369264 | 4369456 | 4369264 | ID=cds.MS.gene57644.t1;Parent=MS.gene57644.t1 |
| Gene Sequence |
| Protein sequence |
