Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene57684.t1 | KEH18955.1 | 95 | 501 | 23 | 2 | 1 | 500 | 1 | 500 | 5.70E-260 | 907.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene57684.t1 | F4IH31 | 67.0 | 227 | 74 | 1 | 819 | 1045 | 105 | 330 | 3.0e-84 | 315.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene57684.t1 | A0A072TZJ6 | 95.0 | 501 | 23 | 2 | 1 | 500 | 1 | 500 | 4.1e-260 | 907.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene051648 | MS.gene57684 | 0.807111 | 5.93E-50 | -1.69E-46 |
| MS.gene051660 | MS.gene57684 | 0.805182 | 1.51E-49 | -1.69E-46 |
| MS.gene053536 | MS.gene57684 | 0.866665 | 2.41E-65 | -1.69E-46 |
| MS.gene053538 | MS.gene57684 | 0.864146 | 1.50E-64 | -1.69E-46 |
| MS.gene053945 | MS.gene57684 | 0.84437 | 7.88E-59 | -1.69E-46 |
| MS.gene055764 | MS.gene57684 | 0.803515 | 3.36E-49 | -1.69E-46 |
| MS.gene059424 | MS.gene57684 | 0.863122 | 3.12E-64 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene57684.t1 | MTR_8g432670 | 95.010 | 501 | 23 | 2 | 1 | 500 | 1 | 500 | 0.0 | 951 |
| MS.gene57684.t1 | MTR_8g432670 | 79.734 | 301 | 12 | 2 | 501 | 752 | 170 | 470 | 3.81e-141 | 433 |
| MS.gene57684.t1 | MTR_8g432670 | 95.833 | 72 | 3 | 0 | 749 | 820 | 177 | 248 | 1.82e-34 | 139 |
| MS.gene57684.t1 | MTR_5g083730 | 93.421 | 228 | 14 | 1 | 819 | 1046 | 100 | 326 | 1.40e-150 | 451 |
| MS.gene57684.t1 | MTR_5g083720 | 89.912 | 228 | 23 | 0 | 819 | 1046 | 99 | 326 | 1.39e-138 | 420 |
| MS.gene57684.t1 | MTR_4g102810 | 40.826 | 218 | 123 | 3 | 288 | 500 | 364 | 580 | 4.93e-38 | 151 |
| MS.gene57684.t1 | MTR_4g102810 | 33.681 | 288 | 137 | 15 | 1 | 256 | 1 | 266 | 1.13e-17 | 88.6 |
| MS.gene57684.t1 | MTR_4g105430 | 33.750 | 160 | 90 | 3 | 354 | 498 | 212 | 370 | 1.72e-13 | 73.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene57684.t1 | AT2G40410 | 66.960 | 227 | 74 | 1 | 819 | 1045 | 105 | 330 | 3.29e-105 | 332 |
| MS.gene57684.t1 | AT3G56170 | 65.351 | 228 | 78 | 1 | 819 | 1046 | 95 | 321 | 4.77e-103 | 326 |
| MS.gene57684.t1 | AT2G40410 | 60.656 | 122 | 47 | 1 | 819 | 940 | 105 | 225 | 3.62e-43 | 157 |
| MS.gene57684.t1 | AT4G11740 | 41.228 | 228 | 108 | 2 | 288 | 500 | 348 | 564 | 1.68e-42 | 164 |
| MS.gene57684.t1 | AT4G11740 | 29.801 | 302 | 152 | 14 | 1 | 274 | 1 | 270 | 3.10e-15 | 80.5 |
| MS.gene57684.t1 | AT4G23040 | 45.701 | 221 | 99 | 4 | 288 | 500 | 318 | 525 | 5.71e-42 | 162 |
| MS.gene57684.t1 | AT4G23040 | 30.085 | 236 | 112 | 8 | 1 | 216 | 1 | 203 | 8.86e-11 | 66.2 |
| MS.gene57684.t1 | AT4G00752 | 32.055 | 365 | 183 | 14 | 1 | 316 | 1 | 349 | 2.09e-33 | 135 |
| MS.gene57684.t1 | AT4G11740 | 29.430 | 316 | 162 | 15 | 1 | 287 | 1 | 284 | 1.52e-15 | 81.3 |
Find 193 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTGATTTCATTGACATTTA+TGG | 0.037512 | 8.3:-61689226 | MS.gene57684:CDS |
| CAAGAATGAGGCTTTATTTC+TGG | 0.096417 | 8.3:-61670490 | MS.gene57684:CDS |
| TATGATTTCATAGACATTTA+TGG | 0.120097 | 8.3:-61668442 | MS.gene57684:CDS |
| CTGATTGAAACTGCACTTTA+TGG | 0.144237 | 8.3:-61669285 | MS.gene57684:CDS |
| TCTTTGAGAGTCCTTATTTA+TGG | 0.151619 | 8.3:-61666164 | MS.gene57684:CDS |
| TTATTTCTGGAGTTGATTTA+TGG | 0.168476 | 8.3:-61670477 | MS.gene57684:CDS |
| CTGATTGAAACTGCGCTTTA+TGG | 0.169001 | 8.3:-61690961 | MS.gene57684:CDS |
| TATCATTTCACTGTCTTTAC+AGG | 0.210054 | 8.3:-61691938 | MS.gene57684:intron |
| TGTCATTTCACTGTCTTTAC+AGG | 0.243061 | 8.3:-61667659 | MS.gene57684:intron |
| TGTCATTTCACTGTCTTTAC+AGG | 0.243061 | 8.3:-61670154 | MS.gene57684:intron |
| TAGGAATTGTTGACTTTCTA+TGG | 0.246130 | 8.3:-61667318 | MS.gene57684:CDS |
| TTTCTTCTTGCTTTGATGAA+TGG | 0.255614 | 8.3:+61668967 | None:intergenic |
| GAGCGAAGCGAGTTGGATTA+TGG | 0.267595 | 8.3:-61665792 | MS.gene57684:CDS |
| TTCTTCTTGCTTTGATGAAT+GGG | 0.268129 | 8.3:+61668968 | None:intergenic |
| TCTCATGGTAGAGGATATTA+TGG | 0.274729 | 8.3:-61692257 | MS.gene57684:CDS |
| GCACTTACAGTTTCTAGTTC+TGG | 0.299518 | 8.3:+61665941 | None:intergenic |
| TGAACGAGAAGATGATGATT+TGG | 0.317721 | 8.3:-61667686 | MS.gene57684:CDS |
| TGAACGAGAAGATGATGATT+TGG | 0.317721 | 8.3:-61670181 | MS.gene57684:CDS |
| TGAACGAGAAGATGATGATT+TGG | 0.317721 | 8.3:-61691965 | MS.gene57684:CDS |
| ATGAAGGTTGCGACGGATTC+CGG | 0.318205 | 8.3:+61694050 | None:intergenic |
| TTCTCTGATCTCTTTCTTTG+AGG | 0.319805 | 8.3:+61692136 | None:intergenic |
| TATTTCTGGAGTTGATTTAT+GGG | 0.322741 | 8.3:-61670476 | MS.gene57684:CDS |
| TCTCCAATCCCATGGCTTCT+CGG | 0.327793 | 8.3:+61665756 | None:intergenic |
| ACTGGATGAACCCTGCCTTT+TGG | 0.331875 | 8.3:+61669185 | None:intergenic |
| ACTGGATGAACCCTGCCTTT+TGG | 0.331875 | 8.3:+61690861 | None:intergenic |
| GCTGCAATGTGCACGTTACT+AGG | 0.332410 | 8.3:+61666590 | None:intergenic |
| CTCCAATCCCATGGCTTCTC+GGG | 0.340831 | 8.3:+61665757 | None:intergenic |
| CTTCAAAACTGACAAGCTTC+AGG | 0.348852 | 8.3:-61689964 | MS.gene57684:intron |
| CACGTGACTCGGCGCGGTTT+TGG | 0.350561 | 8.3:+61692534 | None:intergenic |
| TCGCCTAAGGGTGGTTCATT+TGG | 0.363564 | 8.3:+61690047 | None:intergenic |
| AGATTTCCCTTGAACAATCT+TGG | 0.366156 | 8.3:+61666184 | None:intergenic |
| TCTGAATGATGTTGCGGGTC+AGG | 0.374493 | 8.3:+61690898 | None:intergenic |
| CACCTCTAGTTTGCTTCTGT+TGG | 0.374730 | 8.3:+61669944 | None:intergenic |
| TCTGAATGATGTTGCAGGTC+AGG | 0.374858 | 8.3:+61669222 | None:intergenic |
| TGAAGGTTGCGACGGATTCC+GGG | 0.383914 | 8.3:+61694051 | None:intergenic |
| TTCATAGTTCCTTCTAGAAC+GGG | 0.384606 | 8.3:+61666550 | None:intergenic |
| AGCGAAGCGAGTTGGATTAT+GGG | 0.389091 | 8.3:-61665791 | MS.gene57684:CDS |
| TTCTCTGATCTCCTTCTTCG+AGG | 0.391845 | 8.3:+61667858 | None:intergenic |
| TTCTCTGATCTCCTTCTTCG+AGG | 0.391845 | 8.3:+61670353 | None:intergenic |
| GGTTGAACAGCTACTTCAAC+TGG | 0.393087 | 8.3:+61667276 | None:intergenic |
| TCCAATAAAATGTGCATTCA+CGG | 0.399173 | 8.3:+61692770 | None:intergenic |
| TCTCGTTCAAAATGACTTTG+TGG | 0.407322 | 8.3:+61691979 | None:intergenic |
| GATCAGTATCAACGTTTAGT+AGG | 0.413012 | 8.3:-61666137 | MS.gene57684:CDS |
| TTCTTCTTGCTTTGACGAGT+GGG | 0.419473 | 8.3:+61690642 | None:intergenic |
| CAATCCAGGTTGATACTGAT+AGG | 0.420651 | 8.3:+61692316 | None:intergenic |
| CTGTCCTTTCTCCAATCCCA+TGG | 0.425752 | 8.3:+61665748 | None:intergenic |
| TCAGTTGATAAGACAACAAC+AGG | 0.428917 | 8.3:-61669136 | MS.gene57684:intron |
| TCAGTTGATAAGACAACAAC+AGG | 0.428917 | 8.3:-61690812 | MS.gene57684:intron |
| CAACCTGGATTGGGCTATGC+AGG | 0.430431 | 8.3:-61692305 | MS.gene57684:CDS |
| AGGCAGGGTTCATCCAGTTC+AGG | 0.432623 | 8.3:-61669180 | MS.gene57684:CDS |
| TAATAACTGAGATGCTGAAC+TGG | 0.436931 | 8.3:+61690843 | None:intergenic |
| CGCAATGACGACGCTATCCC+CGG | 0.438302 | 8.3:-61694069 | None:intergenic |
| TACTATTGTTGTTCGAATGC+CGG | 0.439751 | 8.3:-61690012 | MS.gene57684:CDS |
| ATATGAAATACACACCTTGC+CGG | 0.439979 | 8.3:-61667223 | MS.gene57684:intron |
| AGAGATCTATGTAACGGGTT+TGG | 0.445773 | 8.3:-61692434 | MS.gene57684:CDS |
| TATCAGTATCAACCTGGATT+GGG | 0.450112 | 8.3:-61692314 | MS.gene57684:CDS |
| AATGCTTCATTGAGCTCGTC+AGG | 0.450397 | 8.3:+61669309 | None:intergenic |
| AATGCTTCATTGAGCTCGTC+AGG | 0.450397 | 8.3:+61690985 | None:intergenic |
| CTATCAGTATCAACCTGGAT+TGG | 0.452638 | 8.3:-61692315 | MS.gene57684:CDS |
| GGGCAGAAGCCCGTTCTAGA+AGG | 0.452975 | 8.3:-61666559 | MS.gene57684:CDS |
| TATTTAGACTGCAGAGAAAG+AGG | 0.453895 | 8.3:-61670051 | MS.gene57684:intron |
| AACTTAGAGATCTATGTAAC+GGG | 0.459209 | 8.3:-61692439 | MS.gene57684:CDS |
| AATTTAGACTGCAGAGAAAG+AGG | 0.466485 | 8.3:-61691835 | MS.gene57684:intron |
| GAAGCACTTGATTGAGCTAA+AGG | 0.467737 | 8.3:+61692209 | None:intergenic |
| ACGGGAGCTTCGAGCGAAAG+AGG | 0.467926 | 8.3:-61691805 | MS.gene57684:CDS |
| TTGCAGGAACTGGAGAAAAC+AGG | 0.468610 | 8.3:-61690092 | MS.gene57684:intron |
| ATCCCGAGAAGCCATGGGAT+TGG | 0.470020 | 8.3:-61665759 | MS.gene57684:CDS |
| GCTAAGGCCTACTTCATTCA+AGG | 0.476513 | 8.3:+61670515 | None:intergenic |
| TAAGGAATTGATGCTAAAGA+AGG | 0.478599 | 8.3:-61665999 | MS.gene57684:intron |
| AAAAGTATCGGATCCGACTA+AGG | 0.479370 | 8.3:-61666360 | MS.gene57684:intron |
| AGAAACACTCACAACTCTAT+AGG | 0.485284 | 8.3:+61668402 | None:intergenic |
| AGAAACACTCACAACTCTAT+AGG | 0.485284 | 8.3:+61689186 | None:intergenic |
| GGCGACGAACTCCGTTGCTC+CGG | 0.486871 | 8.3:+61694019 | None:intergenic |
| GAAGCCAGAGCGAAGCGAGT+TGG | 0.488533 | 8.3:-61665799 | MS.gene57684:CDS |
| GAACTGACCAAGATTGTTCA+AGG | 0.488734 | 8.3:-61666191 | MS.gene57684:CDS |
| CTTCAGAGTAATCATAATGT+GGG | 0.492622 | 8.3:+61692573 | None:intergenic |
| GAAGCACTTGACTGAGCTAA+AGG | 0.493328 | 8.3:+61667934 | None:intergenic |
| GAAGCACTTGACTGAGCTAA+AGG | 0.493328 | 8.3:+61670429 | None:intergenic |
| ACATGAGCTTCGAGTAAAAG+AGG | 0.495126 | 8.3:-61670021 | MS.gene57684:CDS |
| CAGAGAAAGAGGAAGCAATA+CGG | 0.495874 | 8.3:-61691824 | MS.gene57684:CDS |
| CTTCATAGTTCCTTCTAGAA+CGG | 0.497762 | 8.3:+61666549 | None:intergenic |
| TAATCCAACTCGCTTCGCTC+TGG | 0.500251 | 8.3:+61665795 | None:intergenic |
| TGTTGCAGGTCAGGCAAAGA+TGG | 0.502286 | 8.3:+61669231 | None:intergenic |
| TTTCTTCTTGCTTTGACGAG+TGG | 0.504658 | 8.3:+61690641 | None:intergenic |
| AAGCCTCATTCTTGTTGCTA+AGG | 0.504811 | 8.3:+61670499 | None:intergenic |
| TGCACATTGCAGCCGTGCAT+AGG | 0.508473 | 8.3:-61666580 | MS.gene57684:CDS |
| TAGTTCTGGTCGTTTGTCGT+AGG | 0.512281 | 8.3:+61665955 | None:intergenic |
| GTTCTCCACAAGGGGAGGCA+AGG | 0.512550 | 8.3:-61692376 | MS.gene57684:CDS |
| AAATGCTGATCCCAAAAGGC+AGG | 0.513755 | 8.3:-61669196 | MS.gene57684:CDS |
| AAGGAACTATGAAGAGGAAG+AGG | 0.513763 | 8.3:-61666540 | MS.gene57684:CDS |
| TACTACTTGACTCAAACTAT+AGG | 0.513851 | 8.3:-61692466 | MS.gene57684:CDS |
| AATTCCCTTGCCTCCCCTTG+TGG | 0.513986 | 8.3:+61692371 | None:intergenic |
| TAATAATTGAGATCCTGAAC+TGG | 0.517718 | 8.3:+61669167 | None:intergenic |
| AAATGCTGATCCCAAAAGGC+AGG | 0.520325 | 8.3:-61690872 | MS.gene57684:CDS |
| GCACATTGCAGCCGTGCATA+GGG | 0.522397 | 8.3:-61666579 | MS.gene57684:CDS |
| AAGCACTTGATTGAGCTAAA+GGG | 0.522489 | 8.3:+61692210 | None:intergenic |
| ATTTATGGAGCAGTGAAGCC+TGG | 0.523950 | 8.3:-61668427 | MS.gene57684:CDS |
| CGTTCACAACGACCACCGTC+CGG | 0.525938 | 8.3:+61689993 | None:intergenic |
| TTCTCCACAAGGGGAGGCAA+GGG | 0.527047 | 8.3:-61692375 | MS.gene57684:CDS |
| CTTCCAAATGAACCACCCTT+AGG | 0.529218 | 8.3:-61690050 | MS.gene57684:CDS |
| AGAGAAAGAGGAAGCAATAC+GGG | 0.529756 | 8.3:-61691823 | MS.gene57684:CDS |
| ATGAGATGATAAATTTCCAT+TGG | 0.530591 | 8.3:+61692274 | None:intergenic |
| GCACCTGCATAGCCCAATCC+AGG | 0.530699 | 8.3:+61692302 | None:intergenic |
| TGCTCATGCTTTATTAGCCG+AGG | 0.531346 | 8.3:-61669982 | MS.gene57684:CDS |
| TGCTCATGCTTTATTAGCCG+AGG | 0.531346 | 8.3:-61691766 | MS.gene57684:CDS |
| TGCAATAGAAGCCTCGAAGA+AGG | 0.533510 | 8.3:-61667869 | MS.gene57684:CDS |
| TGCAATAGAAGCCTCGAAGA+AGG | 0.533510 | 8.3:-61670364 | MS.gene57684:CDS |
| CCACATTATGATTACTCTGA+AGG | 0.534093 | 8.3:-61692572 | MS.gene57684:CDS |
| GAAGCCATGGGATTGGAGAA+AGG | 0.535032 | 8.3:-61665752 | MS.gene57684:CDS |
| AAGCACTTGACTGAGCTAAA+GGG | 0.535423 | 8.3:+61667935 | None:intergenic |
| AAGCACTTGACTGAGCTAAA+GGG | 0.535423 | 8.3:+61670430 | None:intergenic |
| GGGACCCGTGATGATTCTCT+AGG | 0.536509 | 8.3:+61666611 | None:intergenic |
| TGTTGCGGGTCAGGCAAAGA+TGG | 0.536723 | 8.3:+61690907 | None:intergenic |
| TTGTCTTATCAACTGAGTCT+CGG | 0.537380 | 8.3:+61690819 | None:intergenic |
| ATTTATGGAGCAGTGAAGGC+TGG | 0.539511 | 8.3:-61689211 | MS.gene57684:CDS |
| CTGCAATGTGCACGTTACTA+GGG | 0.542697 | 8.3:+61666591 | None:intergenic |
| CTCATGGTAGAGGATATTAT+GGG | 0.544269 | 8.3:-61692256 | MS.gene57684:CDS |
| CCTTCAGAGTAATCATAATG+TGG | 0.544518 | 8.3:+61692572 | None:intergenic |
| TGTTTGATGAGTACCTTAGT+CGG | 0.545511 | 8.3:+61666347 | None:intergenic |
| GAGGCAAGGGAATTTCCTAC+AGG | 0.546922 | 8.3:-61692362 | MS.gene57684:CDS |
| AAGGAATTGATGCTAAAGAA+GGG | 0.547387 | 8.3:-61665998 | MS.gene57684:CDS |
| CTCACAACTCTATAGGTGCC+AGG | 0.549128 | 8.3:+61668409 | None:intergenic |
| CCTCCTACATCTTTACCTCA+TGG | 0.550484 | 8.3:-61667252 | MS.gene57684:CDS |
| AGATTGTTGACGCAGGATAC+CGG | 0.551441 | 8.3:-61666505 | MS.gene57684:intron |
| TAATTTGATTCTTACCGGCA+AGG | 0.551993 | 8.3:+61667209 | None:intergenic |
| CGTTCAAAATGACTTTGTTG+AGG | 0.556063 | 8.3:+61667703 | None:intergenic |
| CGTTCAAAATGACTTTGTTG+AGG | 0.556063 | 8.3:+61670198 | None:intergenic |
| TGACATTTATGGAGCAGTGA+AGG | 0.557111 | 8.3:-61689215 | MS.gene57684:CDS |
| AATTTATCATCTCATGGTAG+AGG | 0.558707 | 8.3:-61692266 | MS.gene57684:CDS |
| GTTAGTAGTTCTCTCTCCCT+CGG | 0.562193 | 8.3:+61691749 | None:intergenic |
| ATACAATGTTAATGATAGAT+CGG | 0.562572 | 8.3:-61670541 | MS.gene57684:CDS |
| TAACATTGTATGCTCGTCGC+GGG | 0.563151 | 8.3:+61670553 | None:intergenic |
| AATGGAAATTTATCATCTCA+TGG | 0.563505 | 8.3:-61692272 | MS.gene57684:CDS |
| AGGCATAATTCCACGTGACT+CGG | 0.565327 | 8.3:+61692523 | None:intergenic |
| GCAACCTTCATGCGTATCAC+CGG | 0.567338 | 8.3:-61694038 | MS.gene57684:CDS |
| TTTGAGTCAAGTAGTAGTGA+AGG | 0.568566 | 8.3:+61692473 | None:intergenic |
| CCAGAAAACGCAATGCCGTA+CGG | 0.569693 | 8.3:-61666230 | MS.gene57684:CDS |
| GAACTTAGAGATCTATGTAA+CGG | 0.570755 | 8.3:-61692440 | MS.gene57684:CDS |
| ACTCCATGAGGTAAAGATGT+AGG | 0.574348 | 8.3:+61667249 | None:intergenic |
| CCACCACGTGGTTCTCCACA+AGG | 0.577108 | 8.3:-61692386 | MS.gene57684:CDS |
| AAAGAGGAAAGTGAAGTACT+TGG | 0.577505 | 8.3:-61670005 | MS.gene57684:CDS |
| CATGCGTATCACCGGAGCAA+CGG | 0.590064 | 8.3:-61694030 | MS.gene57684:CDS |
| CAAAACCGCGCCGAGTCACG+TGG | 0.593095 | 8.3:-61692533 | MS.gene57684:CDS |
| ATTGTTGTTCGAATGCCGGA+CGG | 0.596739 | 8.3:-61690008 | MS.gene57684:CDS |
| GGACCCGTGATGATTCTCTA+GGG | 0.596825 | 8.3:+61666612 | None:intergenic |
| TGCTCCGGTGATACGCATGA+AGG | 0.599723 | 8.3:+61694034 | None:intergenic |
| AATCCAGGTTGATACTGATA+GGG | 0.600870 | 8.3:+61692317 | None:intergenic |
| AAAGAGGAAAGTAAAGTACT+TGG | 0.601216 | 8.3:-61691789 | MS.gene57684:CDS |
| AGGCCTTAGCAACAAGAATG+AGG | 0.602952 | 8.3:-61670502 | MS.gene57684:CDS |
| TGAGGTAAAGATGTAGGAGG+AGG | 0.604055 | 8.3:+61667255 | None:intergenic |
| ACCACGTGGTTCTCCACAAG+GGG | 0.608202 | 8.3:-61692384 | MS.gene57684:CDS |
| TCGGCTACCTTGAATGAAGT+AGG | 0.608862 | 8.3:-61670522 | MS.gene57684:CDS |
| TCACCCTATCAGTATCAACC+TGG | 0.609062 | 8.3:-61692320 | MS.gene57684:CDS |
| GCTCATGCTTTATTAGCCGA+GGG | 0.610195 | 8.3:-61669981 | MS.gene57684:CDS |
| GCTCATGCTTTATTAGCCGA+GGG | 0.610195 | 8.3:-61691765 | MS.gene57684:CDS |
| TGCTAAAGAAGGGTTTAGCA+TGG | 0.615254 | 8.3:-61665988 | MS.gene57684:CDS |
| ACGTGGTTCTCCACAAGGGG+AGG | 0.620464 | 8.3:-61692381 | MS.gene57684:CDS |
| GAAGGTTGCGACGGATTCCG+GGG | 0.622423 | 8.3:+61694052 | None:intergenic |
| CTTCTAGCAGCATTGAACAA+AGG | 0.626567 | 8.3:+61692503 | None:intergenic |
| CACAAACAGATTGTTGACGC+AGG | 0.630058 | 8.3:-61666512 | MS.gene57684:CDS |
| ACGGGCTTCTGCCCTATGCA+CGG | 0.632580 | 8.3:+61666568 | None:intergenic |
| GTTGTTCGAATGCCGGACGG+TGG | 0.634608 | 8.3:-61690005 | MS.gene57684:CDS |
| CGTTCATGATGAAGATGCAG+AGG | 0.638826 | 8.3:-61667908 | MS.gene57684:CDS |
| CGTTCATGATGAAGATGCAG+AGG | 0.638826 | 8.3:-61670403 | MS.gene57684:CDS |
| CACCACGTGGTTCTCCACAA+GGG | 0.639472 | 8.3:-61692385 | MS.gene57684:CDS |
| GATGCAAAAGCAGTGGCAGA+TGG | 0.640006 | 8.3:-61666668 | MS.gene57684:CDS |
| CCATGAGGTAAAGATGTAGG+AGG | 0.640081 | 8.3:+61667252 | None:intergenic |
| AAAGCAGTGGCAGATGGTGA+TGG | 0.640689 | 8.3:-61666662 | MS.gene57684:CDS |
| AACTACCTCTAGTTTCTGAA+CGG | 0.640846 | 8.3:+61693998 | None:intergenic |
| CACTAACAGAAGCAAACTAG+AGG | 0.646420 | 8.3:-61691727 | MS.gene57684:intron |
| AATGCTGATCCCAAAAGGCA+GGG | 0.648598 | 8.3:-61669195 | MS.gene57684:CDS |
| ACGTGTTCATGAAGATGCAG+AGG | 0.649063 | 8.3:-61692186 | MS.gene57684:CDS |
| TAATTCCACGTGACTCGGCG+CGG | 0.652100 | 8.3:+61692528 | None:intergenic |
| TTCTAGAAGGAACTATGAAG+AGG | 0.652223 | 8.3:-61666546 | MS.gene57684:CDS |
| AACTGACCAAGATTGTTCAA+GGG | 0.653454 | 8.3:-61666190 | MS.gene57684:CDS |
| CAGACCCTAGAGAATCATCA+CGG | 0.653536 | 8.3:-61666616 | MS.gene57684:CDS |
| GATGATTCTATTTGAAAACG+AGG | 0.654761 | 8.3:-61666395 | MS.gene57684:CDS |
| ATTTCATATTGTACTCCATG+AGG | 0.657234 | 8.3:+61667237 | None:intergenic |
| TTCAGAGTAATCATAATGTG+GGG | 0.657987 | 8.3:+61692574 | None:intergenic |
| AATGCTGATCCCAAAAGGCA+GGG | 0.658565 | 8.3:-61690871 | MS.gene57684:CDS |
| CTAGGTTGATGCAAAAGCAG+TGG | 0.660141 | 8.3:-61666675 | MS.gene57684:intron |
| AGACCCTAGAGAATCATCAC+GGG | 0.670929 | 8.3:-61666615 | MS.gene57684:CDS |
| TATGCAGGTGCTGATACCAA+TGG | 0.672316 | 8.3:-61692290 | MS.gene57684:CDS |
| CACCAACAGAAGCAAACTAG+AGG | 0.674312 | 8.3:-61669946 | MS.gene57684:intron |
| TTAACATTGTATGCTCGTCG+CGG | 0.674332 | 8.3:+61670552 | None:intergenic |
| TCAACTGGAGTATGTGACAG+TGG | 0.679694 | 8.3:+61667291 | None:intergenic |
| GATACGCATGAAGGTTGCGA+CGG | 0.683268 | 8.3:+61694043 | None:intergenic |
| CGTCGCCGTTCAGAAACTAG+AGG | 0.683941 | 8.3:-61694003 | MS.gene57684:intron |
| TGTGCACTATTGATCCCTGT+AGG | 0.694302 | 8.3:+61692347 | None:intergenic |
| AGGCAAGGGAATTTCCTACA+GGG | 0.721531 | 8.3:-61692361 | MS.gene57684:CDS |
| TCAAGTAGTACACCACCACG+TGG | 0.740632 | 8.3:-61692398 | MS.gene57684:CDS |
| CCTTGTGGAGAACCACGTGG+TGG | 0.741616 | 8.3:+61692386 | None:intergenic |
| TCCCCTTGTGGAGAACCACG+TGG | 0.753351 | 8.3:+61692383 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.3 | gene | 61665738 | 61694087 | 61665738 | ID=MS.gene57684 |
| chr8.3 | mRNA | 61665738 | 61694087 | 61665738 | ID=MS.gene57684.t1;Parent=MS.gene57684 |
| chr8.3 | exon | 61694004 | 61694087 | 61694004 | ID=MS.gene57684.t1.exon1;Parent=MS.gene57684.t1 |
| chr8.3 | CDS | 61694004 | 61694087 | 61694004 | ID=cds.MS.gene57684.t1;Parent=MS.gene57684.t1 |
| chr8.3 | exon | 61692759 | 61692817 | 61692759 | ID=MS.gene57684.t1.exon2;Parent=MS.gene57684.t1 |
| chr8.3 | CDS | 61692759 | 61692817 | 61692759 | ID=cds.MS.gene57684.t1;Parent=MS.gene57684.t1 |
| chr8.3 | exon | 61692112 | 61692625 | 61692112 | ID=MS.gene57684.t1.exon3;Parent=MS.gene57684.t1 |
| chr8.3 | CDS | 61692112 | 61692625 | 61692112 | ID=cds.MS.gene57684.t1;Parent=MS.gene57684.t1 |
| chr8.3 | exon | 61691939 | 61692022 | 61691939 | ID=MS.gene57684.t1.exon4;Parent=MS.gene57684.t1 |
| chr8.3 | CDS | 61691939 | 61692022 | 61691939 | ID=cds.MS.gene57684.t1;Parent=MS.gene57684.t1 |
| chr8.3 | exon | 61691728 | 61691850 | 61691728 | ID=MS.gene57684.t1.exon5;Parent=MS.gene57684.t1 |
| chr8.3 | CDS | 61691728 | 61691850 | 61691728 | ID=cds.MS.gene57684.t1;Parent=MS.gene57684.t1 |
| chr8.3 | exon | 61690813 | 61691022 | 61690813 | ID=MS.gene57684.t1.exon6;Parent=MS.gene57684.t1 |
| chr8.3 | CDS | 61690813 | 61691022 | 61690813 | ID=cds.MS.gene57684.t1;Parent=MS.gene57684.t1 |
| chr8.3 | exon | 61690615 | 61690734 | 61690615 | ID=MS.gene57684.t1.exon7;Parent=MS.gene57684.t1 |
| chr8.3 | CDS | 61690615 | 61690734 | 61690615 | ID=cds.MS.gene57684.t1;Parent=MS.gene57684.t1 |
| chr8.3 | exon | 61689965 | 61690108 | 61689965 | ID=MS.gene57684.t1.exon8;Parent=MS.gene57684.t1 |
| chr8.3 | CDS | 61689965 | 61690108 | 61689965 | ID=cds.MS.gene57684.t1;Parent=MS.gene57684.t1 |
| chr8.3 | exon | 61689198 | 61689254 | 61689198 | ID=MS.gene57684.t1.exon9;Parent=MS.gene57684.t1 |
| chr8.3 | CDS | 61689198 | 61689254 | 61689198 | ID=cds.MS.gene57684.t1;Parent=MS.gene57684.t1 |
| chr8.3 | exon | 61670329 | 61670586 | 61670329 | ID=MS.gene57684.t1.exon10;Parent=MS.gene57684.t1 |
| chr8.3 | CDS | 61670329 | 61670586 | 61670329 | ID=cds.MS.gene57684.t1;Parent=MS.gene57684.t1 |
| chr8.3 | exon | 61670155 | 61670238 | 61670155 | ID=MS.gene57684.t1.exon11;Parent=MS.gene57684.t1 |
| chr8.3 | CDS | 61670155 | 61670238 | 61670155 | ID=cds.MS.gene57684.t1;Parent=MS.gene57684.t1 |
| chr8.3 | exon | 61669947 | 61670066 | 61669947 | ID=MS.gene57684.t1.exon12;Parent=MS.gene57684.t1 |
| chr8.3 | CDS | 61669947 | 61670066 | 61669947 | ID=cds.MS.gene57684.t1;Parent=MS.gene57684.t1 |
| chr8.3 | exon | 61669137 | 61669346 | 61669137 | ID=MS.gene57684.t1.exon13;Parent=MS.gene57684.t1 |
| chr8.3 | CDS | 61669137 | 61669346 | 61669137 | ID=cds.MS.gene57684.t1;Parent=MS.gene57684.t1 |
| chr8.3 | exon | 61668941 | 61669060 | 61668941 | ID=MS.gene57684.t1.exon14;Parent=MS.gene57684.t1 |
| chr8.3 | CDS | 61668941 | 61669060 | 61668941 | ID=cds.MS.gene57684.t1;Parent=MS.gene57684.t1 |
| chr8.3 | exon | 61668414 | 61668470 | 61668414 | ID=MS.gene57684.t1.exon15;Parent=MS.gene57684.t1 |
| chr8.3 | CDS | 61668414 | 61668470 | 61668414 | ID=cds.MS.gene57684.t1;Parent=MS.gene57684.t1 |
| chr8.3 | exon | 61667834 | 61667965 | 61667834 | ID=MS.gene57684.t1.exon16;Parent=MS.gene57684.t1 |
| chr8.3 | CDS | 61667834 | 61667965 | 61667834 | ID=cds.MS.gene57684.t1;Parent=MS.gene57684.t1 |
| chr8.3 | exon | 61667660 | 61667743 | 61667660 | ID=MS.gene57684.t1.exon17;Parent=MS.gene57684.t1 |
| chr8.3 | CDS | 61667660 | 61667743 | 61667660 | ID=cds.MS.gene57684.t1;Parent=MS.gene57684.t1 |
| chr8.3 | exon | 61667224 | 61667337 | 61667224 | ID=MS.gene57684.t1.exon18;Parent=MS.gene57684.t1 |
| chr8.3 | CDS | 61667224 | 61667337 | 61667224 | ID=cds.MS.gene57684.t1;Parent=MS.gene57684.t1 |
| chr8.3 | exon | 61666506 | 61666693 | 61666506 | ID=MS.gene57684.t1.exon19;Parent=MS.gene57684.t1 |
| chr8.3 | CDS | 61666506 | 61666693 | 61666506 | ID=cds.MS.gene57684.t1;Parent=MS.gene57684.t1 |
| chr8.3 | exon | 61666361 | 61666417 | 61666361 | ID=MS.gene57684.t1.exon20;Parent=MS.gene57684.t1 |
| chr8.3 | CDS | 61666361 | 61666417 | 61666361 | ID=cds.MS.gene57684.t1;Parent=MS.gene57684.t1 |
| chr8.3 | exon | 61666106 | 61666265 | 61666106 | ID=MS.gene57684.t1.exon21;Parent=MS.gene57684.t1 |
| chr8.3 | CDS | 61666106 | 61666265 | 61666106 | ID=cds.MS.gene57684.t1;Parent=MS.gene57684.t1 |
| chr8.3 | exon | 61665949 | 61666017 | 61665949 | ID=MS.gene57684.t1.exon22;Parent=MS.gene57684.t1 |
| chr8.3 | CDS | 61665949 | 61666017 | 61665949 | ID=cds.MS.gene57684.t1;Parent=MS.gene57684.t1 |
| chr8.3 | exon | 61665738 | 61665830 | 61665738 | ID=MS.gene57684.t1.exon23;Parent=MS.gene57684.t1 |
| chr8.3 | CDS | 61665738 | 61665830 | 61665738 | ID=cds.MS.gene57684.t1;Parent=MS.gene57684.t1 |
| Gene Sequence |
| Protein sequence |
