Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene58043.t1 | XP_013458100.1 | 97.1 | 273 | 8 | 0 | 1 | 273 | 1 | 273 | 2.50E-143 | 518.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene58043.t1 | A0A072US03 | 97.1 | 273 | 8 | 0 | 1 | 273 | 1 | 273 | 1.8e-143 | 518.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050787 | MS.gene58043 | 0.816706 | 4.81E-52 | -1.69E-46 |
| MS.gene051860 | MS.gene58043 | 0.812675 | 3.76E-51 | -1.69E-46 |
| MS.gene055356 | MS.gene58043 | 0.811294 | 7.52E-51 | -1.69E-46 |
| MS.gene055358 | MS.gene58043 | 0.804535 | 2.06E-49 | -1.69E-46 |
| MS.gene057469 | MS.gene58043 | 0.823994 | 1.03E-53 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene58043.t1 | MTR_4g115320 | 97.070 | 273 | 8 | 0 | 1 | 273 | 1 | 273 | 0.0 | 545 |
| MS.gene58043.t1 | MTR_4g115320 | 97.070 | 273 | 8 | 0 | 1 | 273 | 31 | 303 | 0.0 | 545 |
| MS.gene58043.t1 | MTR_3g113180 | 82.784 | 273 | 41 | 1 | 1 | 273 | 1 | 267 | 3.12e-150 | 421 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene58043.t1 | AT3G53270 | 53.114 | 273 | 123 | 2 | 1 | 273 | 1 | 268 | 2.71e-100 | 295 |
| MS.gene58043.t1 | AT3G53270 | 53.114 | 273 | 123 | 2 | 1 | 273 | 1 | 268 | 2.71e-100 | 295 |
| MS.gene58043.t1 | AT3G53270 | 53.114 | 273 | 123 | 2 | 1 | 273 | 1 | 268 | 2.71e-100 | 295 |
| MS.gene58043.t1 | AT3G53270 | 53.114 | 273 | 123 | 2 | 1 | 273 | 1 | 268 | 2.71e-100 | 295 |
| MS.gene58043.t1 | AT3G53270 | 53.114 | 273 | 123 | 2 | 1 | 273 | 1 | 268 | 2.71e-100 | 295 |
| MS.gene58043.t1 | AT3G53270 | 53.114 | 273 | 123 | 2 | 1 | 273 | 1 | 268 | 2.71e-100 | 295 |
| MS.gene58043.t1 | AT3G53270 | 53.114 | 273 | 123 | 2 | 1 | 273 | 1 | 268 | 2.71e-100 | 295 |
| MS.gene58043.t1 | AT3G53270 | 53.114 | 273 | 123 | 2 | 1 | 273 | 1 | 268 | 2.71e-100 | 295 |
| MS.gene58043.t1 | AT3G53270 | 52.747 | 273 | 122 | 3 | 1 | 273 | 1 | 266 | 7.07e-98 | 288 |
Find 42 sgRNAs with CRISPR-Local
Find 246 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTTTATAAAATGTTTGTTTC+TGG | 0.171381 | 8.3:+11794368 | None:intergenic |
| CTGATATGTGCTTTATGTTT+TGG | 0.261909 | 8.3:+11794446 | None:intergenic |
| CTTGAAATTATCCGTATTCA+TGG | 0.266659 | 8.3:+11798359 | None:intergenic |
| TAAAGAAGCAAGCAGTATAT+TGG | 0.270087 | 8.3:-11794473 | MS.gene58043:intron |
| AGGGATATATAGACCTTAAA+AGG | 0.310210 | 8.3:+11797386 | None:intergenic |
| TTCTTTATGCAATCTCTGTA+TGG | 0.366893 | 8.3:-11797773 | MS.gene58043:CDS |
| CTAAGTCAACAGCACCAAAA+AGG | 0.386635 | 8.3:+11796443 | None:intergenic |
| TTTCATATGCAGCTTGAATA+CGG | 0.399741 | 8.3:+11796368 | None:intergenic |
| TGGCTGATATGAAAAGAGTA+TGG | 0.405625 | 8.3:-11797850 | MS.gene58043:CDS |
| TCTCTGTATGGCCATTGTAT+AGG | 0.409915 | 8.3:-11797761 | MS.gene58043:intron |
| ACCTTAAAAGGAGGTTTGAA+TGG | 0.413165 | 8.3:+11797398 | None:intergenic |
| TCAGAAGACAAGGAGTTGAT+AGG | 0.429891 | 8.3:-11794427 | MS.gene58043:CDS |
| AGGGTTCTTCACCATGAATA+CGG | 0.446187 | 8.3:-11798370 | None:intergenic |
| TTTAAGGTCTATATATCCCT+TGG | 0.461371 | 8.3:-11797383 | MS.gene58043:intron |
| TGGAGAAGATTGCTGATGAT+TGG | 0.465084 | 8.3:-11794396 | MS.gene58043:CDS |
| TTCATATGCAGCTTGAATAC+GGG | 0.468827 | 8.3:+11796369 | None:intergenic |
| TGCTTTAGTCAAAAGAATGC+TGG | 0.475033 | 8.3:-11796479 | MS.gene58043:CDS |
| AATTCTTGTTATTGATGCAA+AGG | 0.475694 | 8.3:-11796524 | MS.gene58043:CDS |
| AAAGACAGTACAGGCAATAC+AGG | 0.479533 | 8.3:+11797432 | None:intergenic |
| GATGCAAAGGCACATGATAT+CGG | 0.480158 | 8.3:-11796511 | MS.gene58043:CDS |
| CCTTCTGTAATTGTTCGAGT+TGG | 0.482324 | 8.3:+11796392 | None:intergenic |
| ATATTCCTATGCAGGTTACA+TGG | 0.482490 | 8.3:-11797489 | MS.gene58043:intron |
| TGGTTCTTTATCACACAGAC+TGG | 0.488492 | 8.3:-11797459 | MS.gene58043:CDS |
| AGAGACTGACGAATATGAAC+AGG | 0.498916 | 8.3:-11794332 | MS.gene58043:CDS |
| TGACGAATATGAACAGGAGC+TGG | 0.540241 | 8.3:-11794326 | MS.gene58043:CDS |
| ATACAGAGATTGCATAAAGA+AGG | 0.541099 | 8.3:+11797775 | None:intergenic |
| ACTTATAGCTCAATTCGCTC+AGG | 0.549263 | 8.3:-11798322 | MS.gene58043:intron |
| AGGAGAAGCTTCATAAATGT+AGG | 0.556358 | 8.3:+11797811 | None:intergenic |
| GGAGTTGATAGGAGATGTTG+TGG | 0.567493 | 8.3:-11794416 | MS.gene58043:CDS |
| GCAGGTTACATGGTTAGCAA+TGG | 0.586970 | 8.3:-11797479 | MS.gene58043:intron |
| GAGTCTCGTAAAGACAGTAC+AGG | 0.599929 | 8.3:+11797423 | None:intergenic |
| GAGTTGGTTTACTGTTTCTG+TGG | 0.619359 | 8.3:+11796408 | None:intergenic |
| TCTTTATCACACAGACTGGG+TGG | 0.628310 | 8.3:-11797455 | MS.gene58043:CDS |
| GATATATAGACCTTAAAAGG+AGG | 0.637294 | 8.3:+11797389 | None:intergenic |
| AATTGAAAACTATGTCCGCA+TGG | 0.644237 | 8.3:-11796205 | MS.gene58043:CDS |
| GAATACGGATAATTTCAAGA+AGG | 0.655387 | 8.3:-11798355 | MS.gene58043:CDS |
| CCAACTCGAACAATTACAGA+AGG | 0.659059 | 8.3:-11796392 | MS.gene58043:CDS |
| GTAAACATGTACCTATACAA+TGG | 0.660534 | 8.3:+11797750 | None:intergenic |
| AAAGCACATATCAGAAGACA+AGG | 0.660763 | 8.3:-11794437 | MS.gene58043:CDS |
| GGTTCTTTATCACACAGACT+GGG | 0.662797 | 8.3:-11797458 | MS.gene58043:CDS |
| AATGTCAGCTGAATATGCTG+AGG | 0.679138 | 8.3:-11795787 | MS.gene58043:CDS |
| GGAAACTTACAAGGTCCATG+CGG | 0.759110 | 8.3:+11796190 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAATTTCTTAATATGTTATT+CGG | - | chr8.3:11795839-11795858 | MS.gene58043:intron | 10.0% |
| !!! | AACATTTTGTTTTTTATTTA+TGG | - | chr8.3:11797151-11797170 | MS.gene58043:intron | 10.0% |
| !! | AAATTATAACTGAAACTATT+AGG | - | chr8.3:11797355-11797374 | MS.gene58043:intron | 15.0% |
| !! | AGTTTCTATATTGAAATAAA+AGG | + | chr8.3:11795131-11795150 | None:intergenic | 15.0% |
| !! | ATTATTCAATATTCATATTG+CGG | - | chr8.3:11795580-11795599 | MS.gene58043:intron | 15.0% |
| !! | ATTGTTAATAATCGAATAAT+AGG | + | chr8.3:11794726-11794745 | None:intergenic | 15.0% |
| !! | GAATATCAAGATAATAAATA+AGG | - | chr8.3:11797682-11797701 | MS.gene58043:intron | 15.0% |
| !! | TATATTGAAATAAAAGGTAA+AGG | + | chr8.3:11795125-11795144 | None:intergenic | 15.0% |
| !!! | AAATGACAATATTTTCAAAA+TGG | - | chr8.3:11797657-11797676 | MS.gene58043:intron | 15.0% |
| !!! | ATTTGATTGATAATTAGTTA+AGG | - | chr8.3:11795948-11795967 | MS.gene58043:intron | 15.0% |
| !!! | TATTATTTTTTTAGTTAGGA+TGG | - | chr8.3:11795507-11795526 | MS.gene58043:intron | 15.0% |
| !!! | TATTTTAAAAACTGGTTAAA+AGG | - | chr8.3:11794602-11794621 | MS.gene58043:intron | 15.0% |
| !!! | TTTTTATTCGATTTTTGTAT+AGG | + | chr8.3:11797089-11797108 | None:intergenic | 15.0% |
| !!! | TTTTTTTCATCAAATCAATT+TGG | + | chr8.3:11797972-11797991 | None:intergenic | 15.0% |
| !! | AAGTTCATGAGAAAAAAATT+GGG | + | chr8.3:11795629-11795648 | None:intergenic | 20.0% |
| !! | ACTCATGATATAAATTACAA+AGG | - | chr8.3:11797749-11797768 | MS.gene58043:intron | 20.0% |
| !! | ATGTCCATATTAAACTTATT+GGG | - | chr8.3:11796573-11796592 | MS.gene58043:intron | 20.0% |
| !! | ATTCAAACAAATAAGTTGTT+GGG | + | chr8.3:11796382-11796401 | None:intergenic | 20.0% |
| !! | CATTTGTATACTATATAACA+CGG | - | chr8.3:11796912-11796931 | MS.gene58043:intron | 20.0% |
| !! | GCAATATGAATATTGAATAA+TGG | + | chr8.3:11795581-11795600 | None:intergenic | 20.0% |
| !! | GTAATTTATATCATGAGTAT+AGG | + | chr8.3:11797747-11797766 | None:intergenic | 20.0% |
| !! | TTAAGAAAGAAAAAAAGACA+AGG | + | chr8.3:11798155-11798174 | None:intergenic | 20.0% |
| !!! | AAACAATTCTAAAGCTATAT+TGG | + | chr8.3:11794445-11794464 | None:intergenic | 20.0% |
| !!! | AATTTTTTTCTGGGTAATTT+GGG | - | chr8.3:11794983-11795002 | MS.gene58043:intron | 20.0% |
| !!! | ATATAGCTTTAGAATTGTTT+TGG | - | chr8.3:11794445-11794464 | MS.gene58043:CDS | 20.0% |
| !!! | ATTTTATAAACAAACAGGAT+TGG | - | chr8.3:11798289-11798308 | MS.gene58043:intron | 20.0% |
| !!! | CAATTTTTGTTGTTCAATTT+TGG | - | chr8.3:11794746-11794765 | MS.gene58043:intron | 20.0% |
| !!! | GTTTCAGTTATAATTTTTCT+AGG | + | chr8.3:11797351-11797370 | None:intergenic | 20.0% |
| !!! | TATAATGTCCAATTTTGTTA+TGG | - | chr8.3:11794487-11794506 | MS.gene58043:intron | 20.0% |
| !!! | TTAACGAATAAATCATTTTG+TGG | + | chr8.3:11796493-11796512 | None:intergenic | 20.0% |
| !!! | TTTATTTTATCCTATTCCTT+TGG | - | chr8.3:11797798-11797817 | MS.gene58043:CDS | 20.0% |
| !!! | TTTTATAAACAAACAGGATT+GGG | - | chr8.3:11798290-11798309 | MS.gene58043:intron | 20.0% |
| ! | AACAAAAATTGTCATACCAA+GGG | + | chr8.3:11795281-11795300 | None:intergenic | 25.0% |
| ! | ATATTGAATAATGGCTAGAT+TGG | + | chr8.3:11795572-11795591 | None:intergenic | 25.0% |
| ! | ATGATAAGCTATGTTTATTG+AGG | - | chr8.3:11797935-11797954 | MS.gene58043:intron | 25.0% |
| ! | ATGTCGTTATATTCAAAATG+AGG | + | chr8.3:11794377-11794396 | None:intergenic | 25.0% |
| ! | CAAAAACAGTATCATAACTA+CGG | - | chr8.3:11794521-11794540 | MS.gene58043:intron | 25.0% |
| ! | CATATTAAACTTATTGGGTT+GGG | - | chr8.3:11796578-11796597 | MS.gene58043:intron | 25.0% |
| ! | CATTCAAACAAATAAGTTGT+TGG | + | chr8.3:11796383-11796402 | None:intergenic | 25.0% |
| ! | GAAGTTCATGAGAAAAAAAT+TGG | + | chr8.3:11795630-11795649 | None:intergenic | 25.0% |
| ! | GATAAAGATAGGATATGATA+TGG | - | chr8.3:11797484-11797503 | MS.gene58043:intron | 25.0% |
| ! | GATGTCCATATTAAACTTAT+TGG | - | chr8.3:11796572-11796591 | MS.gene58043:intron | 25.0% |
| ! | GCAAAAAATGTAGCTATTAA+AGG | - | chr8.3:11796880-11796899 | MS.gene58043:intron | 25.0% |
| ! | GTCAAAAAATATCAATAACC+AGG | + | chr8.3:11795738-11795757 | None:intergenic | 25.0% |
| ! | TACATAATACACTTATCAAC+AGG | + | chr8.3:11796713-11796732 | None:intergenic | 25.0% |
| ! | TATTTATGGTAAGACTAGAT+GGG | - | chr8.3:11797165-11797184 | MS.gene58043:intron | 25.0% |
| ! | TCACCAATATAAAATTCCAT+TGG | + | chr8.3:11795707-11795726 | None:intergenic | 25.0% |
| ! | TTATTTATGGTAAGACTAGA+TGG | - | chr8.3:11797164-11797183 | MS.gene58043:intron | 25.0% |
| ! | TTGTACAATGAAAATATGTC+TGG | - | chr8.3:11795470-11795489 | MS.gene58043:intron | 25.0% |
| ! | TTTACCCTAGTTAAAAATGA+AGG | + | chr8.3:11795923-11795942 | None:intergenic | 25.0% |
| ! | TTTCAAATCATGTTGCATTT+AGG | + | chr8.3:11794554-11794573 | None:intergenic | 25.0% |
| !! | AAGGAACATTTTCTATATCT+TGG | - | chr8.3:11796942-11796961 | MS.gene58043:intron | 25.0% |
| !! | ATATTAAACTTATTGGGTTG+GGG | - | chr8.3:11796579-11796598 | MS.gene58043:intron | 25.0% |
| !! | CGTAACATAAGCTTTAATTA+TGG | - | chr8.3:11795327-11795346 | MS.gene58043:intron | 25.0% |
| !! | TGTCCAATGGAATTTTATAT+TGG | - | chr8.3:11795701-11795720 | MS.gene58043:intron | 25.0% |
| !! | TTCTATCGTAAACCATATTT+TGG | + | chr8.3:11797407-11797426 | None:intergenic | 25.0% |
| !!! | AATTCTTGTTATTGATGCAA+AGG | - | chr8.3:11796121-11796140 | MS.gene58043:intron | 25.0% |
| !!! | ATGTTCCTTCATTTTTAACT+AGG | - | chr8.3:11795915-11795934 | MS.gene58043:intron | 25.0% |
| !!! | ATGTTTCTATTTTCTGTTTC+TGG | - | chr8.3:11795391-11795410 | MS.gene58043:intron | 25.0% |
| !!! | GAATTTTTTTCTGGGTAATT+TGG | - | chr8.3:11794982-11795001 | MS.gene58043:intron | 25.0% |
| !!! | GGTAAAGCTATTTTAAAAAC+TGG | - | chr8.3:11794594-11794613 | MS.gene58043:intron | 25.0% |
| !!! | TAGAAAAGATGATGGAAAAT+AGG | - | chr8.3:11797226-11797245 | MS.gene58043:intron | 25.0% |
| !!! | TCGTTAATCTTTTTCAACTA+TGG | - | chr8.3:11796506-11796525 | MS.gene58043:CDS | 25.0% |
| !!! | TGTGTTCTGAATTTTTTTCT+GGG | - | chr8.3:11794974-11794993 | MS.gene58043:intron | 25.0% |
| !!! | TGTTCCTTCATTTTTAACTA+GGG | - | chr8.3:11795916-11795935 | MS.gene58043:intron | 25.0% |
| !!! | TTGTGTTCTGAATTTTTTTC+TGG | - | chr8.3:11794973-11794992 | MS.gene58043:intron | 25.0% |
| AGGGATATATAGACCTTAAA+AGG | + | chr8.3:11795262-11795281 | None:intergenic | 30.0% | |
| ATACAGAGATTGCATAAAGA+AGG | + | chr8.3:11794873-11794892 | None:intergenic | 30.0% | |
| ATATAGAGCTGGATAAAGAT+AGG | - | chr8.3:11797473-11797492 | MS.gene58043:CDS | 30.0% | |
| ATCAAACATGAGATTTAAGC+AGG | - | chr8.3:11797824-11797843 | MS.gene58043:CDS | 30.0% | |
| ATTCTTTCACTTACATTTGG+TGG | + | chr8.3:11797121-11797140 | None:intergenic | 30.0% | |
| ATTTATGGTAAGACTAGATG+GGG | - | chr8.3:11797166-11797185 | MS.gene58043:intron | 30.0% | |
| CACATTCTTTCACTTACATT+TGG | + | chr8.3:11797124-11797143 | None:intergenic | 30.0% | |
| CCAACCCAATAAGTTTAATA+TGG | + | chr8.3:11796580-11796599 | None:intergenic | 30.0% | |
| CCATATTAAACTTATTGGGT+TGG | - | chr8.3:11796577-11796596 | MS.gene58043:intron | 30.0% | |
| GAACAAAAATTGTCATACCA+AGG | + | chr8.3:11795282-11795301 | None:intergenic | 30.0% | |
| GAATACGGATAATTTCAAGA+AGG | - | chr8.3:11794290-11794309 | MS.gene58043:CDS | 30.0% | |
| GATATATAGACCTTAAAAGG+AGG | + | chr8.3:11795259-11795278 | None:intergenic | 30.0% | |
| GTAAACATGTACCTATACAA+TGG | + | chr8.3:11794898-11794917 | None:intergenic | 30.0% | |
| GTCAGAAATCAACATTAGTT+TGG | + | chr8.3:11797052-11797071 | None:intergenic | 30.0% | |
| TAAAGAAGCAAGCAGTATAT+TGG | - | chr8.3:11798172-11798191 | MS.gene58043:intron | 30.0% | |
| TAACCTGCATAGGAATATAA+AGG | + | chr8.3:11795154-11795173 | None:intergenic | 30.0% | |
| TATACAGTCAGCTTAACATT+AGG | - | chr8.3:11796532-11796551 | MS.gene58043:CDS | 30.0% | |
| TCGAATAATAGGAAACAAGT+AGG | + | chr8.3:11794715-11794734 | None:intergenic | 30.0% | |
| TGAAACTATTAGGAAAGACT+AGG | - | chr8.3:11797365-11797384 | MS.gene58043:intron | 30.0% | |
| TGACCATTGTCTAAATCAAT+TGG | - | chr8.3:11798125-11798144 | MS.gene58043:intron | 30.0% | |
| TTACAAAGGAAAGTCAAGAT+AGG | - | chr8.3:11797763-11797782 | MS.gene58043:CDS | 30.0% | |
| TTATATCATGAGTATAGGCT+GGG | + | chr8.3:11797742-11797761 | None:intergenic | 30.0% | |
| TTCAGCATACTAATCAGTAT+TGG | - | chr8.3:11796651-11796670 | MS.gene58043:intron | 30.0% | |
| TTCTTTATGCAATCTCTGTA+TGG | - | chr8.3:11794872-11794891 | MS.gene58043:intron | 30.0% | |
| TTTATATCATGAGTATAGGC+TGG | + | chr8.3:11797743-11797762 | None:intergenic | 30.0% | |
| TTTCATATGCAGCTTGAATA+CGG | + | chr8.3:11796280-11796299 | None:intergenic | 30.0% | |
| ! | ACATTTTCTTCAGCAAATTG+AGG | + | chr8.3:11796843-11796862 | None:intergenic | 30.0% |
| ! | CTGATATGTGCTTTATGTTT+TGG | + | chr8.3:11798202-11798221 | None:intergenic | 30.0% |
| ! | CTGATGATGCTTTCTAATAT+GGG | - | chr8.3:11795678-11795697 | MS.gene58043:intron | 30.0% |
| ! | GTATGACAATTTTTGTTCGA+AGG | - | chr8.3:11795284-11795303 | MS.gene58043:intron | 30.0% |
| ! | GTCATAACTTAATGATGATG+TGG | - | chr8.3:11796013-11796032 | MS.gene58043:intron | 30.0% |
| ! | TAATGAGTTGGACCAAAATA+TGG | - | chr8.3:11797392-11797411 | MS.gene58043:CDS | 30.0% |
| ! | TAGAGATTTTGTAGTAAGGA+GGG | - | chr8.3:11797281-11797300 | MS.gene58043:intron | 30.0% |
| ! | TCAAATTTGCATGTTTCTAC+AGG | - | chr8.3:11796080-11796099 | MS.gene58043:intron | 30.0% |
| ! | TTTAAGGTCTATATATCCCT+TGG | - | chr8.3:11795262-11795281 | MS.gene58043:intron | 30.0% |
| !! | TAGAGGTACCATAACAAAAT+TGG | + | chr8.3:11794498-11794517 | None:intergenic | 30.0% |
| !! | TATTAAACTTATTGGGTTGG+GGG | - | chr8.3:11796580-11796599 | MS.gene58043:intron | 30.0% |
| !!! | GGTTTTGAATAAAACCAAAC+TGG | + | chr8.3:11794678-11794697 | None:intergenic | 30.0% |
| !!! | GTTCAATTTTGGTTAATGAC+AGG | - | chr8.3:11794757-11794776 | MS.gene58043:intron | 30.0% |
| !!! | TGATACTGTTTTTGCTTTAG+AGG | + | chr8.3:11794515-11794534 | None:intergenic | 30.0% |
| !!! | TTTTCTGTTTCTGGTTTCAT+AGG | - | chr8.3:11795400-11795419 | MS.gene58043:intron | 30.0% |
| AAAATAGGCTTAGGTGGTTT+GGG | - | chr8.3:11797241-11797260 | MS.gene58043:intron | 35.0% | |
| AAAGCACATATCAGAAGACA+AGG | - | chr8.3:11798208-11798227 | MS.gene58043:intron | 35.0% | |
| AAGGAAAGTCAAGATAGGAT+AGG | - | chr8.3:11797768-11797787 | MS.gene58043:CDS | 35.0% | |
| AATGATCTTCTAATCCCATC+AGG | - | chr8.3:11797705-11797724 | MS.gene58043:intron | 35.0% | |
| AATTGAAAACTATGTCCGCA+TGG | - | chr8.3:11796440-11796459 | MS.gene58043:CDS | 35.0% | |
| ACAATGAAGCTTGACTCATT+AGG | + | chr8.3:11795869-11795888 | None:intergenic | 35.0% | |
| ACAGGATGAGTCAAAAACTT+TGG | - | chr8.3:11794775-11794794 | MS.gene58043:intron | 35.0% | |
| ACCTAGAGTAGAAAAGATGA+TGG | - | chr8.3:11797218-11797237 | MS.gene58043:intron | 35.0% | |
| ACCTTAAAAGGAGGTTTGAA+TGG | + | chr8.3:11795250-11795269 | None:intergenic | 35.0% | |
| ACTCCTTTATATTCCTATGC+AGG | - | chr8.3:11795148-11795167 | MS.gene58043:intron | 35.0% | |
| AGACTAGGAGATTAATGAGT+TGG | - | chr8.3:11797380-11797399 | MS.gene58043:intron | 35.0% | |
| AGGAAAGTCAAGATAGGATA+GGG | - | chr8.3:11797769-11797788 | MS.gene58043:CDS | 35.0% | |
| AGGAGAAGCTTCATAAATGT+AGG | + | chr8.3:11794837-11794856 | None:intergenic | 35.0% | |
| ATATTCCTATGCAGGTTACA+TGG | - | chr8.3:11795156-11795175 | MS.gene58043:intron | 35.0% | |
| ATATTGGTGAAATGTCTTCC+TGG | - | chr8.3:11795717-11795736 | MS.gene58043:intron | 35.0% | |
| ATGCGCACATGATAACAAAT+AGG | - | chr8.3:11797539-11797558 | MS.gene58043:intron | 35.0% | |
| CAATGAAGCTTGACTCATTA+GGG | + | chr8.3:11795868-11795887 | None:intergenic | 35.0% | |
| CCATTGTCTAAATCAATTGG+TGG | - | chr8.3:11798128-11798147 | MS.gene58043:intron | 35.0% | |
| CTCCTTACTACAAAATCTCT+AGG | + | chr8.3:11797282-11797301 | None:intergenic | 35.0% | |
| GCTATGTTTATTGAGGTTTG+TGG | - | chr8.3:11797942-11797961 | MS.gene58043:intron | 35.0% | |
| GGGTTAGAAATTATCCTGAT+GGG | + | chr8.3:11797722-11797741 | None:intergenic | 35.0% | |
| GTATAGGTACATGTTTACCT+GGG | - | chr8.3:11794900-11794919 | MS.gene58043:intron | 35.0% | |
| TAATAGGAAACAAGTAGGAC+TGG | + | chr8.3:11794710-11794729 | None:intergenic | 35.0% | |
| TAGTCCTCAAAGAAAAGTTC+AGG | + | chr8.3:11798046-11798065 | None:intergenic | 35.0% | |
| TATATAACACGGCTTGAGAA+AGG | - | chr8.3:11796923-11796942 | MS.gene58043:intron | 35.0% | |
| TCAGCTTAACATTAGGAAGA+TGG | - | chr8.3:11796539-11796558 | MS.gene58043:CDS | 35.0% | |
| TGCTTTAGTCAAAAGAATGC+TGG | - | chr8.3:11796166-11796185 | MS.gene58043:intron | 35.0% | |
| TGGCTGATATGAAAAGAGTA+TGG | - | chr8.3:11794795-11794814 | MS.gene58043:intron | 35.0% | |
| TGTATAGGTACATGTTTACC+TGG | - | chr8.3:11794899-11794918 | MS.gene58043:intron | 35.0% | |
| TTCATATGCAGCTTGAATAC+GGG | + | chr8.3:11796279-11796298 | None:intergenic | 35.0% | |
| TTCTCATGAACTTCATTGTC+AGG | - | chr8.3:11795636-11795655 | MS.gene58043:intron | 35.0% | |
| TTGTCAGGTGAAGATATTGT+AGG | - | chr8.3:11795651-11795670 | MS.gene58043:intron | 35.0% | |
| TTGTTTGAATGTGTTCCATG+TGG | - | chr8.3:11796392-11796411 | MS.gene58043:CDS | 35.0% | |
| TTTCTAATATGGGTGTCCAA+TGG | - | chr8.3:11795688-11795707 | MS.gene58043:intron | 35.0% | |
| ! | AACTCCTGAACTTTTCTTTG+AGG | - | chr8.3:11798039-11798058 | MS.gene58043:intron | 35.0% |
| ! | ACCATTCAAACCTCCTTTTA+AGG | - | chr8.3:11795246-11795265 | MS.gene58043:intron | 35.0% |
| ! | AGCTTCTCCTTCTAAAAACT+TGG | - | chr8.3:11794847-11794866 | MS.gene58043:intron | 35.0% |
| ! | ATGCGGACATAGTTTTCAAT+TGG | + | chr8.3:11796441-11796460 | None:intergenic | 35.0% |
| ! | ATTTTGTGGTCACAAAGAAC+CGG | + | chr8.3:11796479-11796498 | None:intergenic | 35.0% |
| ! | CCACCAATTGATTTAGACAA+TGG | + | chr8.3:11798131-11798150 | None:intergenic | 35.0% |
| ! | CTAGAGATTTTGTAGTAAGG+AGG | - | chr8.3:11797280-11797299 | MS.gene58043:intron | 35.0% |
| ! | GACCTAGAGATTTTGTAGTA+AGG | - | chr8.3:11797277-11797296 | MS.gene58043:intron | 35.0% |
| ! | GCTGATGATGCTTTCTAATA+TGG | - | chr8.3:11795677-11795696 | MS.gene58043:intron | 35.0% |
| ! | TCCATCATCTTTTCTACTCT+AGG | + | chr8.3:11797222-11797241 | None:intergenic | 35.0% |
| ! | TGATTTGAAACGAGACTGTT+TGG | - | chr8.3:11794564-11794583 | MS.gene58043:intron | 35.0% |
| ! | TGGGTTAGAAATTATCCTGA+TGG | + | chr8.3:11797723-11797742 | None:intergenic | 35.0% |
| !! | AAGAAGGCCAAGTTTTTAGA+AGG | + | chr8.3:11794857-11794876 | None:intergenic | 35.0% |
| !! | AAGTAGGACTGGTTGAAAAA+TGG | + | chr8.3:11794699-11794718 | None:intergenic | 35.0% |
| !! | AGATGATGGAAAATAGGCTT+AGG | - | chr8.3:11797232-11797251 | MS.gene58043:intron | 35.0% |
| !! | AGCATTCTTTTGACTAAAGC+AGG | + | chr8.3:11796167-11796186 | None:intergenic | 35.0% |
| !! | ATTAAACTTATTGGGTTGGG+GGG | - | chr8.3:11796581-11796600 | MS.gene58043:intron | 35.0% |
| !! | ATTCATTTCTAGCGAATGAC+AGG | + | chr8.3:11797007-11797026 | None:intergenic | 35.0% |
| !! | TTCATTTCTAGCGAATGACA+GGG | + | chr8.3:11797006-11797025 | None:intergenic | 35.0% |
| AAAGACAGTACAGGCAATAC+AGG | + | chr8.3:11795216-11795235 | None:intergenic | 40.0% | |
| AATGTCAGCTGAATATGCTG+AGG | - | chr8.3:11796858-11796877 | MS.gene58043:intron | 40.0% | |
| ACAACAACAACCAAGCCTTT+AGG | + | chr8.3:11797901-11797920 | None:intergenic | 40.0% | |
| ACACTTATCAACAGGCTGAT+TGG | + | chr8.3:11796705-11796724 | None:intergenic | 40.0% | |
| ACAGGGAAAACACAAAGACT+TGG | + | chr8.3:11796989-11797008 | None:intergenic | 40.0% | |
| ACCAAACTGGTACAGCTAAA+AGG | + | chr8.3:11794665-11794684 | None:intergenic | 40.0% | |
| ACTTATAGCTCAATTCGCTC+AGG | - | chr8.3:11794323-11794342 | MS.gene58043:CDS | 40.0% | |
| AGAGACTGACGAATATGAAC+AGG | - | chr8.3:11798313-11798332 | MS.gene58043:intron | 40.0% | |
| CAAAGAACCGGAAACTTACA+AGG | + | chr8.3:11796467-11796486 | None:intergenic | 40.0% | |
| CAACAACAACCAAGCCTTTA+GGG | + | chr8.3:11797900-11797919 | None:intergenic | 40.0% | |
| CCAACTCGAACAATTACAGA+AGG | - | chr8.3:11796253-11796272 | MS.gene58043:intron | 40.0% | |
| CCTTCTGTAATTGTTCGAGT+TGG | + | chr8.3:11796256-11796275 | None:intergenic | 40.0% | |
| CTAAGTCAACAGCACCAAAA+AGG | + | chr8.3:11796205-11796224 | None:intergenic | 40.0% | |
| GAAAATAGGCTTAGGTGGTT+TGG | - | chr8.3:11797240-11797259 | MS.gene58043:intron | 40.0% | |
| GAACATTAGTGCTCGTTTGA+TGG | - | chr8.3:11797424-11797443 | MS.gene58043:CDS | 40.0% | |
| GACAACACGACAAAGAAAGA+AGG | + | chr8.3:11796344-11796363 | None:intergenic | 40.0% | |
| GGTTCTTTATCACACAGACT+GGG | - | chr8.3:11795187-11795206 | MS.gene58043:intron | 40.0% | |
| GTCAAGATAGGATAGGGAAA+TGG | - | chr8.3:11797775-11797794 | MS.gene58043:CDS | 40.0% | |
| GTTTGATGCACCAAAGGAAT+AGG | + | chr8.3:11797811-11797830 | None:intergenic | 40.0% | |
| TAATCAGAACTGCATATCCC+AGG | + | chr8.3:11794920-11794939 | None:intergenic | 40.0% | |
| TACTTGAAACCCATCAAGCT+CGG | + | chr8.3:11796625-11796644 | None:intergenic | 40.0% | |
| TCAAGCTTCATTGTTCCAAG+TGG | - | chr8.3:11795875-11795894 | MS.gene58043:intron | 40.0% | |
| TCTCATGTTTGATGCACCAA+AGG | + | chr8.3:11797817-11797836 | None:intergenic | 40.0% | |
| TCTCTGTATGGCCATTGTAT+AGG | - | chr8.3:11794884-11794903 | MS.gene58043:intron | 40.0% | |
| TGATGGAAAATAGGCTTAGG+TGG | - | chr8.3:11797235-11797254 | MS.gene58043:intron | 40.0% | |
| TGGAGAAGATTGCTGATGAT+TGG | - | chr8.3:11798249-11798268 | MS.gene58043:intron | 40.0% | |
| TGGTTCTTTATCACACAGAC+TGG | - | chr8.3:11795186-11795205 | MS.gene58043:intron | 40.0% | |
| TTTGACACTGCACATGCATT+TGG | - | chr8.3:11795752-11795771 | MS.gene58043:intron | 40.0% | |
| ! | ACGAGACTGTTTGGTTGTTT+TGG | - | chr8.3:11794573-11794592 | MS.gene58043:intron | 40.0% |
| ! | GAAAGTAGCACGTTCCTTTT+TGG | - | chr8.3:11796188-11796207 | MS.gene58043:intron | 40.0% |
| ! | GATGCAAAGGCACATGATAT+CGG | - | chr8.3:11796134-11796153 | MS.gene58043:intron | 40.0% |
| ! | TCAGAAGACAAGGAGTTGAT+AGG | - | chr8.3:11798218-11798237 | MS.gene58043:intron | 40.0% |
| !! | GAGTTGGTTTACTGTTTCTG+TGG | + | chr8.3:11796240-11796259 | None:intergenic | 40.0% |
| !! | TCCTTTTAGCTGTACCAGTT+TGG | - | chr8.3:11794661-11794680 | MS.gene58043:intron | 40.0% |
| !! | TTAAACTTATTGGGTTGGGG+GGG | - | chr8.3:11796582-11796601 | MS.gene58043:intron | 40.0% |
| !!! | CGTTGTTGTGTTTTAAGGAC+AGG | - | chr8.3:11795603-11795622 | MS.gene58043:intron | 40.0% |
| !!! | TTTTGGTGCTGTTGACTTAG+CGG | - | chr8.3:11796205-11796224 | MS.gene58043:CDS | 40.0% |
| ACACTGCACATGCATTTGGT+AGG | - | chr8.3:11795756-11795775 | MS.gene58043:intron | 45.0% | |
| AGTAAGGAGGGTAGATCAGA+TGG | - | chr8.3:11797293-11797312 | MS.gene58043:intron | 45.0% | |
| ATGTGTTCCATGTGGATGAC+AGG | - | chr8.3:11796400-11796419 | MS.gene58043:CDS | 45.0% | |
| CAAACAACCTGTCATCCACA+TGG | + | chr8.3:11796410-11796429 | None:intergenic | 45.0% | |
| CACTGCACATGCATTTGGTA+GGG | - | chr8.3:11795757-11795776 | MS.gene58043:intron | 45.0% | |
| CCAATCCCTGGTATGTAGAA+AGG | + | chr8.3:11796813-11796832 | None:intergenic | 45.0% | |
| CCTCTCCTTTCTACATACCA+GGG | - | chr8.3:11796805-11796824 | MS.gene58043:intron | 45.0% | |
| CCTGGTATGTAGAAAGGAGA+GGG | + | chr8.3:11796807-11796826 | None:intergenic | 45.0% | |
| CCTTTCTACATACCAGGGAT+TGG | - | chr8.3:11796810-11796829 | MS.gene58043:intron | 45.0% | |
| CTGGTATGTAGAAAGGAGAG+GGG | + | chr8.3:11796806-11796825 | None:intergenic | 45.0% | |
| GAGTCTCGTAAAGACAGTAC+AGG | + | chr8.3:11795225-11795244 | None:intergenic | 45.0% | |
| GCAGGTTACATGGTTAGCAA+TGG | - | chr8.3:11795166-11795185 | MS.gene58043:intron | 45.0% | |
| GCATGACTGTATAGACCACT+TGG | + | chr8.3:11795893-11795912 | None:intergenic | 45.0% | |
| GCATGGACCTTGTAAGTTTC+CGG | - | chr8.3:11796457-11796476 | MS.gene58043:CDS | 45.0% | |
| GCTAACCATGTAACCTGCAT+AGG | + | chr8.3:11795164-11795183 | None:intergenic | 45.0% | |
| GGAAACTTACAAGGTCCATG+CGG | + | chr8.3:11796458-11796477 | None:intergenic | 45.0% | |
| GGCAGGATATGATATAGAGC+TGG | - | chr8.3:11797462-11797481 | MS.gene58043:CDS | 45.0% | |
| GTGCGCATCAAACACATGAT+AGG | + | chr8.3:11797527-11797546 | None:intergenic | 45.0% | |
| TCCCTATCCTGACCATCAAA+CGG | - | chr8.3:11797873-11797892 | MS.gene58043:intron | 45.0% | |
| TCTTTATCACACAGACTGGG+TGG | - | chr8.3:11795190-11795209 | MS.gene58043:intron | 45.0% | |
| TGACGAATATGAACAGGAGC+TGG | - | chr8.3:11798319-11798338 | MS.gene58043:intron | 45.0% | |
| TGATGGTCAGGATAGGATAG+AGG | - | chr8.3:11797441-11797460 | MS.gene58043:CDS | 45.0% | |
| ! | TCCGTTTGATGGTCAGGATA+GGG | + | chr8.3:11797877-11797896 | None:intergenic | 45.0% |
| ! | TGCGGCGTTGTTGTGTTTTA+AGG | - | chr8.3:11795598-11795617 | MS.gene58043:intron | 45.0% |
| ! | TTAGTGCTCGTTTGATGGTC+AGG | - | chr8.3:11797429-11797448 | MS.gene58043:CDS | 45.0% |
| !! | GGAGTTGATAGGAGATGTTG+TGG | - | chr8.3:11798229-11798248 | MS.gene58043:intron | 45.0% |
| !! | TTAATTAAATATTGTAAAAA+TGG | - | chr8.3:11797598-11797617 | MS.gene58043:intron | 5.0% |
| !!! | TTAATATTATTTTTTTAGTT+AGG | - | chr8.3:11795503-11795522 | MS.gene58043:intron | 5.0% |
| AAGGAGGGTAGATCAGATGG+AGG | - | chr8.3:11797296-11797315 | MS.gene58043:intron | 50.0% | |
| AGGTCTTCCTCTGCCTCTAA+GGG | + | chr8.3:11797331-11797350 | None:intergenic | 50.0% | |
| AGTTAGACCCTTAGAGGCAG+AGG | - | chr8.3:11797321-11797340 | MS.gene58043:intron | 50.0% | |
| CCCTCTCCTTTCTACATACC+AGG | - | chr8.3:11796804-11796823 | MS.gene58043:intron | 50.0% | |
| CCCTGGTATGTAGAAAGGAG+AGG | + | chr8.3:11796808-11796827 | None:intergenic | 50.0% | |
| GACCATCAAACGGACCCTAA+AGG | - | chr8.3:11797883-11797902 | MS.gene58043:intron | 50.0% | |
| GAGGAGAGTTAGACCCTTAG+AGG | - | chr8.3:11797315-11797334 | MS.gene58043:intron | 50.0% | |
| GCATTTGGTAGGGTAGATGC+TGG | - | chr8.3:11795767-11795786 | MS.gene58043:CDS | 50.0% | |
| GGAGACTAACCGAGCTTGAT+GGG | - | chr8.3:11796613-11796632 | MS.gene58043:intron | 50.0% | |
| TAGGTCTTCCTCTGCCTCTA+AGG | + | chr8.3:11797332-11797351 | None:intergenic | 50.0% | |
| TCAAACGGACCCTAAAGGCT+TGG | - | chr8.3:11797888-11797907 | MS.gene58043:intron | 50.0% | |
| TGAGGTCTACTTCCAATCCC+TGG | + | chr8.3:11796825-11796844 | None:intergenic | 50.0% | |
| TGGAGACTAACCGAGCTTGA+TGG | - | chr8.3:11796612-11796631 | MS.gene58043:intron | 50.0% | |
| ! | GCTCGTTTGATGGTCAGGAT+AGG | - | chr8.3:11797434-11797453 | MS.gene58043:CDS | 50.0% |
| ! | GTCCGTTTGATGGTCAGGAT+AGG | + | chr8.3:11797878-11797897 | None:intergenic | 50.0% |
| ! | GTTTGATGGTCAGGATAGGG+AGG | + | chr8.3:11797874-11797893 | None:intergenic | 50.0% |
| ! | TTAGGGTCCGTTTGATGGTC+AGG | + | chr8.3:11797883-11797902 | None:intergenic | 50.0% |
| !! | AGCCTTTAGGGTCCGTTTGA+TGG | + | chr8.3:11797888-11797907 | None:intergenic | 50.0% |
| GGTCAGGATAGGATAGAGGC+AGG | - | chr8.3:11797445-11797464 | MS.gene58043:CDS | 55.0% | |
| !! | TGGGTTGGGGGGGTATTTGT+TGG | - | chr8.3:11796592-11796611 | MS.gene58043:intron | 55.0% |
| GATGGTCAGGATAGGGAGGC+AGG | + | chr8.3:11797870-11797889 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.3 | gene | 11794288 | 11798379 | 11794288 | ID=MS.gene58043 |
| chr8.3 | mRNA | 11794288 | 11798379 | 11794288 | ID=MS.gene58043.t1;Parent=MS.gene58043 |
| chr8.3 | exon | 11798323 | 11798379 | 11798323 | ID=MS.gene58043.t1.exon1;Parent=MS.gene58043.t1 |
| chr8.3 | CDS | 11798323 | 11798379 | 11798323 | ID=cds.MS.gene58043.t1;Parent=MS.gene58043.t1 |
| chr8.3 | exon | 11797762 | 11797888 | 11797762 | ID=MS.gene58043.t1.exon2;Parent=MS.gene58043.t1 |
| chr8.3 | CDS | 11797762 | 11797888 | 11797762 | ID=cds.MS.gene58043.t1;Parent=MS.gene58043.t1 |
| chr8.3 | exon | 11797384 | 11797497 | 11797384 | ID=MS.gene58043.t1.exon3;Parent=MS.gene58043.t1 |
| chr8.3 | CDS | 11797384 | 11797497 | 11797384 | ID=cds.MS.gene58043.t1;Parent=MS.gene58043.t1 |
| chr8.3 | exon | 11796367 | 11796565 | 11796367 | ID=MS.gene58043.t1.exon4;Parent=MS.gene58043.t1 |
| chr8.3 | CDS | 11796367 | 11796565 | 11796367 | ID=cds.MS.gene58043.t1;Parent=MS.gene58043.t1 |
| chr8.3 | exon | 11796200 | 11796245 | 11796200 | ID=MS.gene58043.t1.exon5;Parent=MS.gene58043.t1 |
| chr8.3 | CDS | 11796200 | 11796245 | 11796200 | ID=cds.MS.gene58043.t1;Parent=MS.gene58043.t1 |
| chr8.3 | exon | 11795766 | 11795841 | 11795766 | ID=MS.gene58043.t1.exon6;Parent=MS.gene58043.t1 |
| chr8.3 | CDS | 11795766 | 11795841 | 11795766 | ID=cds.MS.gene58043.t1;Parent=MS.gene58043.t1 |
| chr8.3 | exon | 11794288 | 11794490 | 11794288 | ID=MS.gene58043.t1.exon7;Parent=MS.gene58043.t1 |
| chr8.3 | CDS | 11794288 | 11794490 | 11794288 | ID=cds.MS.gene58043.t1;Parent=MS.gene58043.t1 |
| Gene Sequence |
| Protein sequence |
