AlfalfaGEDB | MS.gene58043

M. sativa cultivar XinJiangDaYe / MS.gene58043

KEGG: K15208
GO: -
PFAM: PF09808.12

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene58043.t1	XP_013458100.1	97.1	273	8	0	1	273	1	273	2.50E-143	518.1

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene58043.t1	A0A072US03	97.1	273	8	0	1	273	1	273	1.8e-143	518.1

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene050787	MS.gene58043	0.816706	4.81E-52	-1.69E-46
MS.gene051860	MS.gene58043	0.812675	3.76E-51	-1.69E-46
MS.gene055356	MS.gene58043	0.811294	7.52E-51	-1.69E-46
MS.gene055358	MS.gene58043	0.804535	2.06E-49	-1.69E-46
MS.gene057469	MS.gene58043	0.823994	1.03E-53	-1.69E-46

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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene58043.t1	MTR_4g115320	97.070	273	8	0	1	273	1	273	0.0	545
MS.gene58043.t1	MTR_4g115320	97.070	273	8	0	1	273	31	303	0.0	545
MS.gene58043.t1	MTR_3g113180	82.784	273	41	1	1	273	1	267	3.12e-150	421

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene58043.t1	AT3G53270	53.114	273	123	2	1	273	1	268	2.71e-100	295
MS.gene58043.t1	AT3G53270	53.114	273	123	2	1	273	1	268	2.71e-100	295
MS.gene58043.t1	AT3G53270	53.114	273	123	2	1	273	1	268	2.71e-100	295
MS.gene58043.t1	AT3G53270	53.114	273	123	2	1	273	1	268	2.71e-100	295
MS.gene58043.t1	AT3G53270	53.114	273	123	2	1	273	1	268	2.71e-100	295
MS.gene58043.t1	AT3G53270	53.114	273	123	2	1	273	1	268	2.71e-100	295
MS.gene58043.t1	AT3G53270	53.114	273	123	2	1	273	1	268	2.71e-100	295
MS.gene58043.t1	AT3G53270	53.114	273	123	2	1	273	1	268	2.71e-100	295
MS.gene58043.t1	AT3G53270	52.747	273	122	3	1	273	1	266	7.07e-98	288

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Find 42 sgRNAs with CRISPR-Local

Find 246 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGACAGTACAGGCAATAC+AGG	0.479533	8.3:+11797432	None:intergenic
AAAGCACATATCAGAAGACA+AGG	0.660763	8.3:-11794437	MS.gene58043:CDS
AATGTCAGCTGAATATGCTG+AGG	0.679138	8.3:-11795787	MS.gene58043:CDS
AATTCTTGTTATTGATGCAA+AGG	0.475694	8.3:-11796524	MS.gene58043:CDS
AATTGAAAACTATGTCCGCA+TGG	0.644237	8.3:-11796205	MS.gene58043:CDS
ACCTTAAAAGGAGGTTTGAA+TGG	0.413165	8.3:+11797398	None:intergenic
ACTTATAGCTCAATTCGCTC+AGG	0.549263	8.3:-11798322	MS.gene58043:intron
AGAGACTGACGAATATGAAC+AGG	0.498916	8.3:-11794332	MS.gene58043:CDS
AGGAGAAGCTTCATAAATGT+AGG	0.556358	8.3:+11797811	None:intergenic
AGGGATATATAGACCTTAAA+AGG	0.310210	8.3:+11797386	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AGGGATATATAGACCTTAAA+AGG	+	chr8.3:11795262-11795281	None:intergenic	30.0%
ATACAGAGATTGCATAAAGA+AGG	+	chr8.3:11794873-11794892	None:intergenic	30.0%
ATATAGAGCTGGATAAAGAT+AGG	-	chr8.3:11797473-11797492	MS.gene58043:CDS	30.0%
ATCAAACATGAGATTTAAGC+AGG	-	chr8.3:11797824-11797843	MS.gene58043:CDS	30.0%
ATTCTTTCACTTACATTTGG+TGG	+	chr8.3:11797121-11797140	None:intergenic	30.0%
ATTTATGGTAAGACTAGATG+GGG	-	chr8.3:11797166-11797185	MS.gene58043:intron	30.0%
CACATTCTTTCACTTACATT+TGG	+	chr8.3:11797124-11797143	None:intergenic	30.0%
CCAACCCAATAAGTTTAATA+TGG	+	chr8.3:11796580-11796599	None:intergenic	30.0%
CCATATTAAACTTATTGGGT+TGG	-	chr8.3:11796577-11796596	MS.gene58043:intron	30.0%
GAACAAAAATTGTCATACCA+AGG	+	chr8.3:11795282-11795301	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8.3	gene	11794288	11798379	11794288	ID=MS.gene58043
chr8.3	mRNA	11794288	11798379	11794288	ID=MS.gene58043.t1;Parent=MS.gene58043
chr8.3	exon	11798323	11798379	11798323	ID=MS.gene58043.t1.exon1;Parent=MS.gene58043.t1
chr8.3	CDS	11798323	11798379	11798323	ID=cds.MS.gene58043.t1;Parent=MS.gene58043.t1
chr8.3	exon	11797762	11797888	11797762	ID=MS.gene58043.t1.exon2;Parent=MS.gene58043.t1
chr8.3	CDS	11797762	11797888	11797762	ID=cds.MS.gene58043.t1;Parent=MS.gene58043.t1
chr8.3	exon	11797384	11797497	11797384	ID=MS.gene58043.t1.exon3;Parent=MS.gene58043.t1
chr8.3	CDS	11797384	11797497	11797384	ID=cds.MS.gene58043.t1;Parent=MS.gene58043.t1
chr8.3	exon	11796367	11796565	11796367	ID=MS.gene58043.t1.exon4;Parent=MS.gene58043.t1
chr8.3	CDS	11796367	11796565	11796367	ID=cds.MS.gene58043.t1;Parent=MS.gene58043.t1
chr8.3	exon	11796200	11796245	11796200	ID=MS.gene58043.t1.exon5;Parent=MS.gene58043.t1
chr8.3	CDS	11796200	11796245	11796200	ID=cds.MS.gene58043.t1;Parent=MS.gene58043.t1
chr8.3	exon	11795766	11795841	11795766	ID=MS.gene58043.t1.exon6;Parent=MS.gene58043.t1
chr8.3	CDS	11795766	11795841	11795766	ID=cds.MS.gene58043.t1;Parent=MS.gene58043.t1
chr8.3	exon	11794288	11794490	11794288	ID=MS.gene58043.t1.exon7;Parent=MS.gene58043.t1
chr8.3	CDS	11794288	11794490	11794288	ID=cds.MS.gene58043.t1;Parent=MS.gene58043.t1

Gene Sequence

>MS.gene58043

ATGAATACGGATAATTTCAAGAAGGACATTGATGAACTTATAGCTCAATTCGCTCAGGTATTCTTCAAATTTATCATTCGTGCTTTCCTCATTTTGAATATAACGACATTGTTTCTTGTTGTTGTGAGCATACTTCATTGTTTTTACTTTAAAACCAATATAGCTTTAGAATTGTTTTGGAACTGTTTGATGTTAAATATATAATGTCCAATTTTGTTATGGTACCTCTAAAGCAAAAACAGTATCATAACTACGGAATGAAACCTAAATGCAACATGATTTGAAACGAGACTGTTTGGTTGTTTTGGTAAAGCTATTTTAAAAACTGGTTAAAAGGAAACAGCTTGTTTCAGTAACTTAATTAACTTTTTTTTCCTTTTAGCTGTACCAGTTTGGTTTTATTCAAAACCATTTTTCAACCAGTCCTACTTGTTTCCTATTATTCGATTATTAACAATCAATTTTTGTTGTTCAATTTTGGTTAATGACAGGATGAGTCAAAAACTTTGGCTGATATGAAAAGAGTATGGATTTCTAAGAAGTTTTCCTACATTTATGAAGCTTCTCCTTCTAAAAACTTGGCCTTCTTTATGCAATCTCTGTATGGCCATTGTATAGGTACATGTTTACCTGGGATATGCAGTTCTGATTATAACTATTTTTATATCTATTAGTAAATGTAAGCTTGTGTTCTGAATTTTTTTCTGGGTAATTTGGGTGTTGAATTGCTTTATTTTGTGCTGAAAAGCACAGACAAATTAAAAATCACAATGTATTAGTGAATATTCAGCAGTATTTGATAATTATGTCATATTGTAGATGTTTTACTTTTAGCCTTTACCTTTTATTTCAATATAGAAACTCCTTTATATTCCTATGCAGGTTACATGGTTAGCAATGGTTCTTTATCACACAGACTGGGTGGCCTGTATTGCCTGTACTGTCTTTACGAGACTCAACCATTCAAACCTCCTTTTAAGGTCTATATATCCCTTGGTATGACAATTTTTGTTCGAAGGAATGAATTATTTAATTTGCTCGTAACATAAGCTTTAATTATGGTTTTGTATTGACTCAATTGAGCTGTATAAAGCTACACATGTATGTTTCTATTTTCTGTTTCTGGTTTCATAGGTTCACTAATTTTATCTCTGATTTAGTTAGTATTTGAATCAACATGTTTTGTACAATGAAAATATGTCTGGATTCATGTATTTAATATTATTTTTTTAGTTAGGATGGTAGAATGACATATACATGCATTTGCAACAAAGTTTACTTCCAATCTAGCCATTATTCAATATTCATATTGCGGCGTTGTTGTGTTTTAAGGACAGGCCCAATTTTTTTCTCATGAACTTCATTGTCAGGTGAAGATATTGTAGGTGCGCTGATGATGCTTTCTAATATGGGTGTCCAATGGAATTTTATATTGGTGAAATGTCTTCCTGGTTATTGATATTTTTTGACACTGCACATGCATTTGGTAGGGTAGATGCTGGCTTTTTTATACGATACTATGACATGTGACAGAAGAAATCTTAATCTTACTAATTTCTTAATATGTTATTCGGTGTCCCTAATGAGTCAAGCTTCATTGTTCCAAGTGGTCTATACAGTCATGCATATGTTCCTTCATTTTTAACTAGGGTAAAATTTCATTTGATTGATAATTAGTTAAGGAGAAATGAATATTATTTAATTTAATATGAAAACTTTGAATGTGTCATAACTTAATGATGATGTGGTTTTATGAGAATGAGATGATTTCGTGAGTTTTAATAATTAAGACTCAAATTTGCATGTTTCTACAGGAGAGTTAAAGAATCTTAAAATTCTTGTTATTGATGCAAAGGCACATGATATCGGAGTTGTGCCTGCTTTAGTCAAAAGAATGCTGGAAAGTAGCACGTTCCTTTTTGGTGCTGTTGACTTAGCGGAATGTTCTGCCACAGAAACAGTAAACCAACTCGAACAATTACAGAAGGCCCGTATTCAAGCTGCATATGAAAAGTAAATCATCATATTGAATTTTTGAACTTATGCTCAATATCCTTCTTTCTTTGTCGTGTTGTCATGTTAGTGTTTTAACCCAACAACTTATTTGTTTGAATGTGTTCCATGTGGATGACAGGTTGTTTGATAGCATGCCAATTGAAAACTATGTCCGCATGGACCTTGTAAGTTTCCGGTTCTTTGTGACCACAAAATGATTTATTCGTTAATCTTTTTCAACTATGGTATTATACAGTCAGCTTAACATTAGGAAGATGGAACAAAAACAGATGTCCATATTAAACTTATTGGGTTGGGGGGGTATTTGTTGGAGACTAACCGAGCTTGATGGGTTTCAAGTACATGATTTCAGCATACTAATCAGTATTGGTAGATTTTGATATCTATCTTTTTAGAAACCAATCAGCCTGTTGATAAGTGTATTATGTATATCATTAATCTCATGCTATAAAATTTAAATTGTCTTTATATTAGTTTGTGATTTTTTTTCACTTAACTTCCCCTCTCCTTTCTACATACCAGGGATTGGAAGTAGACCTCAATTTGCTGAAGAAAATGTCAGCTGAATATGCTGAGGCAAAAAATGTAGCTATTAAAGGTATTTATTTCATTTGTATACTATATAACACGGCTTGAGAAAGGAACATTTTCTATATCTTGGAAGTGTTTTCTTTTTGTGAAGCCAAGTCTTTGTGTTTTCCCTGTCATTCGCTAGAAATGAATGTTTTTCTTAATTTGTTCAAGTCCAAACTAATGTTGATTTCTGACTTAACTAATCTGAACCTATACAAAAATCGAATAAAAAATAATTTTTCCACCAAATGTAAGTGAAAGAATGTGTATTTTGAACATTTTGTTTTTTATTTATGGTAAGACTAGATGGGGAGTAGAAATGAAAATATTAGAGAGAGAAGACCTAGAGTAGAAAAGATGATGGAAAATAGGCTTAGGTGGTTTGGGCATGTAGAGAGAAGACCTAGAGATTTTGTAGTAAGGAGGGTAGATCAGATGGAGGAGAGTTAGACCCTTAGAGGCAGAGGAAGACCTAGAAAAATTATAACTGAAACTATTAGGAAAGACTAGGAGATTAATGAGTTGGACCAAAATATGGTTTACGATAGAACATTAGTGCTCGTTTGATGGTCAGGATAGGATAGAGGCAGGATATGATATAGAGCTGGATAAAGATAGGATATGATATGGACATGATAAGCATTAATCCTATCATGTGTTTGATGCGCACATGATAACAAATAGGATATCATTATAATTAAATGAAAAATTGCTCTCATAATTAATTAAATATTGTAAAAATGGTATGTTATTAATTATAATAGAAAATACATATTTTAAAAATGACAATATTTTCAAAATGGCAGAATATCAAGATAATAAATAAGGAATGATCTTCTAATCCCATCAGGATAATTTCTAACCCAGCCTATACTCATGATATAAATTACAAAGGAAAGTCAAGATAGGATAGGGAAATGGTTTATTTTATCCTATTCCTTTGGTGCATCAAACATGAGATTTAAGCAGGATATGATTAATGTATCATATCCTGCCTCCCTATCCTGACCATCAAACGGACCCTAAAGGCTTGGTTGTTGTTGTTTTTTATTTGAAGAATGATAAGCTATGTTTATTGAGGTTTGTGGTTCTCCAAATTGATTTGATGAAAAAAAATTCTTTAATGAATGACAATATGTTAATGTCAATCTCTTACATTTAGAACTCCTGAACTTTTCTTTGAGGACTATTTTGAATGTTCTATCTATCTAGTTGTTACAATTTGTCTGATTCATGATATATCAATTTTGACCATTGTCTAAATCAATTGGTGGTCCTTGTCTTTTTTTCTTTCTTAAAGAAGCAAGCAGTATATTGGACGTCCAAAACATAAAGCACATATCAGAAGACAAGGAGTTGATAGGAGATGTTGTGGAGAAGATTGCTGATGATTGGCACGTCCAGAAACAAACATTTTATAAACAAACAGGATTGGGAGAGACTGACGAATATGAACAGGAGCTGGAGCAATTACTTCTACAGCAGTACTCAGATGATGATTAA

Protein sequence

>MS.gene58043.t1

MNTDNFKKDIDELIAQFAQDESKTLADMKRVWISKKFSYIYEASPSKNLAFFMQSLYGHCIGYMVSNGSLSHRLGGLYCLYCLYETQPFKPPFKVYISLGELKNLKILVIDAKAHDIGVVPALVKRMLESSTFLFGAVDLAECSATETVNQLEQLQKARIQAAYEKLFDSMPIENYVRMDLGLEVDLNLLKKMSAEYAEAKNVAIKEASSILDVQNIKHISEDKELIGDVVEKIADDWHVQKQTFYKQTGLGETDEYEQELEQLLLQQYSDDD