Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene58067.t1 | XP_024636611.1 | 64.7 | 490 | 71 | 7 | 1 | 408 | 8 | 477 | 2.20E-149 | 538.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene58067.t1 | Q9C9C0 | 46.7 | 345 | 100 | 7 | 131 | 397 | 276 | 614 | 1.4e-64 | 248.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene58067.t1 | G7JFI3 | 60.2 | 483 | 78 | 6 | 1 | 408 | 20 | 463 | 5.4e-134 | 487.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene060135 | MS.gene58067 | 0.808425 | 3.12E-50 | -1.69E-46 |
| MS.gene060332 | MS.gene58067 | 0.885675 | 6.63E-72 | -1.69E-46 |
| MS.gene060334 | MS.gene58067 | 0.961899 | 3.07E-120 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene58067.t1 | MTR_4g130360 | 71.006 | 338 | 68 | 4 | 73 | 408 | 154 | 463 | 4.93e-163 | 467 |
| MS.gene58067.t1 | MTR_4g130360 | 72.897 | 107 | 9 | 2 | 1 | 107 | 20 | 106 | 1.20e-29 | 120 |
| MS.gene58067.t1 | MTR_4g112860 | 50.291 | 344 | 87 | 8 | 132 | 397 | 259 | 596 | 7.57e-90 | 286 |
| MS.gene58067.t1 | MTR_4g112860 | 41.322 | 121 | 62 | 3 | 6 | 118 | 3 | 122 | 5.23e-14 | 74.3 |
| MS.gene58067.t1 | MTR_2g058970 | 47.839 | 347 | 97 | 8 | 129 | 397 | 268 | 608 | 5.96e-81 | 263 |
| MS.gene58067.t1 | MTR_5g025810 | 43.142 | 401 | 133 | 13 | 67 | 396 | 35 | 411 | 5.35e-78 | 251 |
| MS.gene58067.t1 | MTR_4g112820 | 46.541 | 318 | 93 | 10 | 132 | 389 | 185 | 485 | 3.73e-71 | 232 |
| MS.gene58067.t1 | MTR_4g112860 | 47.039 | 304 | 135 | 7 | 132 | 415 | 259 | 556 | 2.23e-67 | 224 |
| MS.gene58067.t1 | MTR_4g112860 | 41.322 | 121 | 62 | 3 | 6 | 118 | 3 | 122 | 3.75e-14 | 74.7 |
| MS.gene58067.t1 | MTR_4g112860 | 57.619 | 210 | 69 | 4 | 132 | 325 | 259 | 464 | 5.13e-67 | 221 |
| MS.gene58067.t1 | MTR_4g112860 | 41.322 | 121 | 62 | 3 | 6 | 118 | 3 | 122 | 3.70e-14 | 74.7 |
| MS.gene58067.t1 | MTR_5g082990 | 51.136 | 264 | 77 | 9 | 131 | 361 | 65 | 309 | 8.53e-65 | 213 |
| MS.gene58067.t1 | MTR_8g022470 | 46.102 | 295 | 122 | 9 | 132 | 393 | 27 | 317 | 1.08e-63 | 208 |
| MS.gene58067.t1 | MTR_4g134260 | 44.444 | 243 | 116 | 5 | 173 | 397 | 135 | 376 | 9.16e-50 | 174 |
| MS.gene58067.t1 | MTR_4g114810 | 41.456 | 316 | 61 | 9 | 133 | 397 | 179 | 421 | 2.29e-48 | 172 |
| MS.gene58067.t1 | MTR_5g083100 | 43.443 | 244 | 100 | 8 | 151 | 391 | 37 | 245 | 6.51e-42 | 154 |
| MS.gene58067.t1 | MTR_4g123500 | 34.853 | 307 | 143 | 8 | 133 | 390 | 142 | 440 | 5.77e-39 | 146 |
| MS.gene58067.t1 | MTR_8g022500 | 46.535 | 202 | 49 | 4 | 246 | 390 | 226 | 425 | 4.18e-38 | 144 |
| MS.gene58067.t1 | MTR_4g133130 | 45.876 | 194 | 55 | 5 | 229 | 390 | 50 | 225 | 3.45e-34 | 134 |
| MS.gene58067.t1 | MTR_4g112860 | 50.345 | 145 | 52 | 4 | 132 | 260 | 259 | 399 | 4.45e-33 | 129 |
| MS.gene58067.t1 | MTR_4g112860 | 41.322 | 121 | 62 | 3 | 6 | 118 | 3 | 122 | 2.93e-14 | 74.3 |
| MS.gene58067.t1 | MTR_4g130550 | 44.304 | 79 | 44 | 0 | 248 | 326 | 68 | 146 | 9.26e-14 | 70.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene58067.t1 | AT1G73990 | 41.983 | 343 | 119 | 7 | 131 | 397 | 276 | 614 | 1.28e-63 | 217 |
| MS.gene58067.t1 | AT1G73990 | 50.204 | 245 | 100 | 5 | 131 | 357 | 276 | 516 | 1.30e-61 | 210 |
Find 112 sgRNAs with CRISPR-Local
Find 149 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGGAAAAGGATCTATTATT+TGG | 0.128131 | 8.2:-4619072 | None:intergenic |
| CGAGACAACAACTGCATTAA+TGG | 0.184426 | 8.2:+4618486 | MS.gene58067:CDS |
| TGGATAATATTTACTCAAAT+TGG | 0.197209 | 8.2:+4618506 | MS.gene58067:CDS |
| AATTTGGAAGGTAAGATTTC+TGG | 0.242205 | 8.2:+4617935 | MS.gene58067:CDS |
| TGGAACCTCTTCCATTGATT+TGG | 0.252339 | 8.2:-4619091 | None:intergenic |
| AGGAGGAATTTAATCTTCTT+TGG | 0.260660 | 8.2:+4619289 | MS.gene58067:CDS |
| CTCGGTTTGGTTGATGCTAT+TGG | 0.265550 | 8.2:+4619156 | MS.gene58067:CDS |
| TCATAACGGATTTGCTATAT+AGG | 0.286656 | 8.2:+4618638 | MS.gene58067:CDS |
| CAGTTCAGGAGGTAAATTTC+GGG | 0.292898 | 8.2:+4618894 | MS.gene58067:CDS |
| CCAAGCCTTTCCTTCAAGTT+GGG | 0.324316 | 8.2:-4618673 | None:intergenic |
| TTAGTGCATCCTAATCTTCT+TGG | 0.333889 | 8.2:+4619324 | MS.gene58067:CDS |
| ACAGTTCAGGAGGTAAATTT+CGG | 0.345303 | 8.2:+4618893 | MS.gene58067:CDS |
| GCAGAAAATCTTACCTTAGT+TGG | 0.347938 | 8.2:+4619039 | MS.gene58067:CDS |
| ATAGCCATCATTCGAGTCTC+AGG | 0.356408 | 8.2:+4618784 | MS.gene58067:CDS |
| CACAGGGGAAGGGGAAGGTT+TGG | 0.359665 | 8.2:+4619112 | MS.gene58067:CDS |
| CATAACGGATTTGCTATATA+GGG | 0.361873 | 8.2:+4618639 | MS.gene58067:CDS |
| CGCTCGTGCGGTAGAATTTG+AGG | 0.386162 | 8.2:-4617841 | None:intergenic |
| AGTTTATTGAGAATATATAT+AGG | 0.390012 | 8.2:+4618827 | MS.gene58067:CDS |
| CCCAAGCCTTTCCTTCAAGT+TGG | 0.390394 | 8.2:-4618674 | None:intergenic |
| AAGGCCAATATACCTCAAAA+TGG | 0.390995 | 8.2:+4619213 | MS.gene58067:CDS |
| GTTTATTGAGAATATATATA+GGG | 0.396139 | 8.2:+4618828 | MS.gene58067:CDS |
| CTCTGGCTTGAAGAAGTATC+TGG | 0.400164 | 8.2:+4618033 | MS.gene58067:CDS |
| CTCTTCCATTGATTTGGAAA+AGG | 0.400283 | 8.2:-4619085 | None:intergenic |
| ATTGTCCGAATTGACAGTTC+AGG | 0.411636 | 8.2:+4618880 | MS.gene58067:CDS |
| TTGGTTAACTTTGTAACTAA+AGG | 0.412796 | 8.2:+4618580 | MS.gene58067:CDS |
| CCAACTTGAAGGAAAGGCTT+GGG | 0.422842 | 8.2:+4618674 | MS.gene58067:CDS |
| TGGATAATCAACATCCTTGC+CGG | 0.434812 | 8.2:-4617984 | None:intergenic |
| GCTCGTGCGGTAGAATTTGA+GGG | 0.437753 | 8.2:-4617840 | None:intergenic |
| CTCCCAGGGTAAAGTTGGAC+AGG | 0.443050 | 8.2:-4619265 | None:intergenic |
| TACCTCCTGAACTGTCAATT+CGG | 0.443292 | 8.2:-4618885 | None:intergenic |
| GTTCTTCAAATCAATTTGTC+CGG | 0.445006 | 8.2:+4618109 | MS.gene58067:CDS |
| TCCTCCTCCCAGGGTAAAGT+TGG | 0.446367 | 8.2:-4619270 | None:intergenic |
| GAATTTGAGGGGTTTATGAA+TGG | 0.450237 | 8.2:-4617828 | None:intergenic |
| GGAAGAGGTTCCACAGGGGA+AGG | 0.463372 | 8.2:+4619101 | MS.gene58067:CDS |
| AAGAGGTTCCACAGGGGAAG+GGG | 0.467563 | 8.2:+4619103 | MS.gene58067:CDS |
| CAGATCATCAACAGAATTCA+AGG | 0.474665 | 8.2:+4618852 | MS.gene58067:CDS |
| ATTAAATTCCTCCTCCTCCC+AGG | 0.476401 | 8.2:-4619280 | None:intergenic |
| AGGGGTTTATGAATGGTAGC+AGG | 0.476548 | 8.2:-4617821 | None:intergenic |
| AAGAGAAAATGTCGAAAACT+TGG | 0.476552 | 8.2:+4618561 | MS.gene58067:CDS |
| AAGGATGTTGATTATCCAAC+CGG | 0.477750 | 8.2:+4617989 | MS.gene58067:CDS |
| AAGTTGTGACCAAGAAGATT+AGG | 0.481987 | 8.2:-4619333 | None:intergenic |
| AACTTTACCCTGGGAGGAGG+AGG | 0.483757 | 8.2:+4619272 | MS.gene58067:CDS |
| GCAGGATACTACTTAGCAAC+GGG | 0.485513 | 8.2:+4619000 | MS.gene58067:CDS |
| CAAAGAAGAGGGTTTCATAA+CGG | 0.489037 | 8.2:+4618624 | MS.gene58067:CDS |
| TACTACTTAGCAACGGGAGC+AGG | 0.490304 | 8.2:+4619006 | MS.gene58067:CDS |
| GGACGCAACATCTCTCGGTT+TGG | 0.491111 | 8.2:+4619143 | MS.gene58067:CDS |
| TTCGGGCATCTAATTATATG+TGG | 0.492637 | 8.2:+4618911 | MS.gene58067:CDS |
| TCTGATGTGGCAACAAGTGC+AGG | 0.494828 | 8.2:+4618982 | MS.gene58067:CDS |
| AATCGACTGTTGGAATATCA+AGG | 0.496160 | 8.2:+4618746 | MS.gene58067:CDS |
| TGATATTATCCCCAACTTGA+AGG | 0.496185 | 8.2:+4618663 | MS.gene58067:CDS |
| TGTTACTGCATTATTCGTAA+AGG | 0.500089 | 8.2:+4619355 | MS.gene58067:CDS |
| TACCTCTGAATCGGTGTGTA+GGG | 0.501142 | 8.2:-4618146 | None:intergenic |
| CGCGTTAGTAAATCGACTGT+TGG | 0.501184 | 8.2:+4618736 | MS.gene58067:CDS |
| ATCAATGGAAGAGGTTCCAC+AGG | 0.501640 | 8.2:+4619095 | MS.gene58067:CDS |
| GAAGATTAGGATGCACTAAC+GGG | 0.503183 | 8.2:-4619320 | None:intergenic |
| TAGAGATAATACCTCTGAAT+CGG | 0.505324 | 8.2:-4618155 | None:intergenic |
| CCCAACTTGAAGGAAAGGCT+TGG | 0.506916 | 8.2:+4618673 | MS.gene58067:CDS |
| TTTGATTTCATTCCACACTC+TGG | 0.514952 | 8.2:+4618016 | MS.gene58067:CDS |
| GAAGAGGTTCCACAGGGGAA+GGG | 0.517831 | 8.2:+4619102 | MS.gene58067:CDS |
| TTATCCCCAACTTGAAGGAA+AGG | 0.520815 | 8.2:+4618668 | MS.gene58067:CDS |
| TGGAATGAAATCAAAATCTC+CGG | 0.524479 | 8.2:-4618008 | None:intergenic |
| CAAGCCTTTCCTTCAAGTTG+GGG | 0.529315 | 8.2:-4618672 | None:intergenic |
| AACATCCTTGCCGGAAGAAG+AGG | 0.530642 | 8.2:-4617975 | None:intergenic |
| GGTTCCACAGGGGAAGGGGA+AGG | 0.533194 | 8.2:+4619107 | MS.gene58067:CDS |
| ATCAGATATTGAAGCAATGA+CGG | 0.536024 | 8.2:-4618965 | None:intergenic |
| GGTTTGGTTGATGCTATTGG+TGG | 0.540573 | 8.2:+4619159 | MS.gene58067:CDS |
| TATTCTTTGAAAGAAACAAA+AGG | 0.543012 | 8.2:-4618709 | None:intergenic |
| TGGACTAAAAGAACCAACTA+AGG | 0.544447 | 8.2:-4619052 | None:intergenic |
| AGAAGATTAGGATGCACTAA+CGG | 0.547063 | 8.2:-4619321 | None:intergenic |
| TCAGATATTGAAGCAATGAC+GGG | 0.551209 | 8.2:-4618964 | None:intergenic |
| ATACCTCTGAATCGGTGTGT+AGG | 0.552557 | 8.2:-4618147 | None:intergenic |
| CACCCTGTCCAACTTTACCC+TGG | 0.555639 | 8.2:+4619262 | MS.gene58067:CDS |
| GTTTGGTTGATGCTATTGGT+GGG | 0.556402 | 8.2:+4619160 | MS.gene58067:CDS |
| GGTAAGGACGCAACATCTCT+CGG | 0.557645 | 8.2:+4619138 | MS.gene58067:CDS |
| CACCCTACACACCGATTCAG+AGG | 0.558538 | 8.2:+4618144 | MS.gene58067:CDS |
| TGAATCGGTGTGTAGGGTGT+CGG | 0.562552 | 8.2:-4618140 | None:intergenic |
| TCCAACTTTACCCTGGGAGG+AGG | 0.565785 | 8.2:+4619269 | MS.gene58067:CDS |
| GATGTAGTATCTTCTTCCAC+CGG | 0.568021 | 8.2:+4618532 | MS.gene58067:CDS |
| AGTAGAAGAACTCAAAGAAG+AGG | 0.568425 | 8.2:+4618612 | MS.gene58067:CDS |
| AGACCCTGAGACTCGAATGA+TGG | 0.571972 | 8.2:-4618788 | None:intergenic |
| CTCGTGCGGTAGAATTTGAG+GGG | 0.580670 | 8.2:-4617839 | None:intergenic |
| CTGCTAGCACTCCCCTCAGA+GGG | 0.583729 | 8.2:+4618070 | MS.gene58067:CDS |
| ACCCTGTCCAACTTTACCCT+GGG | 0.586996 | 8.2:+4619263 | MS.gene58067:CDS |
| AGCAGGTGATATACAGCGAT+CGG | 0.592109 | 8.2:-4617804 | None:intergenic |
| GTAGAAGAACTCAAAGAAGA+GGG | 0.593743 | 8.2:+4618613 | MS.gene58067:CDS |
| TAGGGTGTCGGATATTATGC+CGG | 0.594782 | 8.2:-4618128 | None:intergenic |
| ATGAAATCAAAATCTCCGGT+TGG | 0.594805 | 8.2:-4618004 | None:intergenic |
| TACTTCTTCAAGCCAGAGTG+TGG | 0.594882 | 8.2:-4618028 | None:intergenic |
| TTAATGCAGTTGTTGTCTCG+TGG | 0.598388 | 8.2:-4618483 | None:intergenic |
| ATCGACTGTTGGAATATCAA+GGG | 0.598413 | 8.2:+4618747 | MS.gene58067:CDS |
| CATTGCTTCAATATCTGATG+TGG | 0.601190 | 8.2:+4618969 | MS.gene58067:CDS |
| TTAAATTCCTCCTCCTCCCA+GGG | 0.602774 | 8.2:-4619279 | None:intergenic |
| GGGGAAGGTTTGGACTGGTA+AGG | 0.604771 | 8.2:+4619122 | MS.gene58067:CDS |
| TAGCCATCATTCGAGTCTCA+GGG | 0.606571 | 8.2:+4618785 | MS.gene58067:CDS |
| CGATCAATAATAGAAGATGA+TGG | 0.608918 | 8.2:-4617878 | None:intergenic |
| TGCAGGATACTACTTAGCAA+CGG | 0.610387 | 8.2:+4618999 | MS.gene58067:CDS |
| CGGAAGAAGAGGAAAATAAG+TGG | 0.613550 | 8.2:-4617964 | None:intergenic |
| ATAATAGAAGATGATGGTGG+CGG | 0.619265 | 8.2:-4617872 | None:intergenic |
| GTCCGAATTGACAGTTCAGG+AGG | 0.622572 | 8.2:+4618883 | MS.gene58067:CDS |
| AGGGTCTATCAGTAGTGCAA+CGG | 0.633641 | 8.2:+4618804 | MS.gene58067:CDS |
| CAACTTGAAGGAAAGGCTTG+GGG | 0.634279 | 8.2:+4618675 | MS.gene58067:CDS |
| GGGAAGGGGAAGGTTTGGAC+TGG | 0.637451 | 8.2:+4619117 | MS.gene58067:CDS |
| CAAACCTTCCCCTTCCCCTG+TGG | 0.650489 | 8.2:-4619111 | None:intergenic |
| TCCCAGGGTAAAGTTGGACA+GGG | 0.651519 | 8.2:-4619264 | None:intergenic |
| CAATATACCTCAAAATGGTG+AGG | 0.660377 | 8.2:+4619218 | MS.gene58067:CDS |
| TCAATGGAAGAGGTTCCACA+GGG | 0.668896 | 8.2:+4619096 | MS.gene58067:CDS |
| TCTGCTAGCACTCCCCTCAG+AGG | 0.672433 | 8.2:+4618069 | MS.gene58067:CDS |
| CTGTCCAACTTTACCCTGGG+AGG | 0.673818 | 8.2:+4619266 | MS.gene58067:CDS |
| TATTGCTATAGCAAAATCGA+AGG | 0.687235 | 8.2:+4619194 | MS.gene58067:CDS |
| GCGGTGATATTGCGCTCGTG+CGG | 0.694021 | 8.2:-4617853 | None:intergenic |
| TCAATAATAGAAGATGATGG+TGG | 0.696702 | 8.2:-4617875 | None:intergenic |
| CAATGGAAGAGGTTCCACAG+GGG | 0.794420 | 8.2:+4619097 | MS.gene58067:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AGTTTATTGAGAATATATAT+AGG | + | chr8.2:4618827-4618846 | MS.gene58067:CDS | 15.0% |
| !! | CACAAATTTAGTTATATTAA+GGG | + | chr8.2:4618436-4618455 | MS.gene58067:intron | 15.0% |
| !! | GTTTATTGAGAATATATATA+GGG | + | chr8.2:4618828-4618847 | MS.gene58067:CDS | 15.0% |
| !! | TCACAAATTTAGTTATATTA+AGG | + | chr8.2:4618435-4618454 | MS.gene58067:intron | 15.0% |
| !!! | AAATTGAATTTTTTGTGAAT+CGG | - | chr8.2:4617920-4617939 | None:intergenic | 15.0% |
| !! | ATCTTAAATTTCAGAAAATC+AGG | + | chr8.2:4618295-4618314 | MS.gene58067:intron | 20.0% |
| !! | GATTCACAAAAAATTCAATT+TGG | + | chr8.2:4617919-4617938 | MS.gene58067:CDS | 20.0% |
| !! | TGGATAATATTTACTCAAAT+TGG | + | chr8.2:4618506-4618525 | MS.gene58067:CDS | 20.0% |
| !!! | TATTCTTTGAAAGAAACAAA+AGG | - | chr8.2:4618712-4618731 | None:intergenic | 20.0% |
| ! | AACAAATTATCGCAAATTTG+AGG | - | chr8.2:4618181-4618200 | None:intergenic | 25.0% |
| ! | AATATCCAAAATTTGAACAC+TGG | + | chr8.2:4618241-4618260 | MS.gene58067:intron | 25.0% |
| ! | AGATATACAACATAAATACG+AGG | - | chr8.2:4618220-4618239 | None:intergenic | 25.0% |
| ! | ATAACTAAATTTGTGAACAG+TGG | - | chr8.2:4618431-4618450 | None:intergenic | 25.0% |
| ! | CACAAAAAATTCAATTTGGA+AGG | + | chr8.2:4617923-4617942 | MS.gene58067:CDS | 25.0% |
| ! | TAACTAAATTTGTGAACAGT+GGG | - | chr8.2:4618430-4618449 | None:intergenic | 25.0% |
| ! | TTGGAAAAGGATCTATTATT+TGG | - | chr8.2:4619075-4619094 | None:intergenic | 25.0% |
| ! | TTGGTTAACTTTGTAACTAA+AGG | + | chr8.2:4618580-4618599 | MS.gene58067:CDS | 25.0% |
| AAGAGAAAATGTCGAAAACT+TGG | + | chr8.2:4618561-4618580 | MS.gene58067:CDS | 30.0% | |
| AATTTGGAAGGTAAGATTTC+TGG | + | chr8.2:4617935-4617954 | MS.gene58067:CDS | 30.0% | |
| AGGAGGAATTTAATCTTCTT+TGG | + | chr8.2:4619289-4619308 | MS.gene58067:CDS | 30.0% | |
| ATAAATACGAGGATCATACA+TGG | - | chr8.2:4618209-4618228 | None:intergenic | 30.0% | |
| ATCAGATATTGAAGCAATGA+CGG | - | chr8.2:4618968-4618987 | None:intergenic | 30.0% | |
| CGATCAATAATAGAAGATGA+TGG | - | chr8.2:4617881-4617900 | None:intergenic | 30.0% | |
| GTAAACTAGATGAAATTCGA+AGG | + | chr8.2:4618269-4618288 | MS.gene58067:intron | 30.0% | |
| GTTCTTCAAATCAATTTGTC+CGG | + | chr8.2:4618109-4618128 | MS.gene58067:CDS | 30.0% | |
| TACAAATGAACCTCAACAAA+AGG | - | chr8.2:4618403-4618422 | None:intergenic | 30.0% | |
| TAGAGATAATACCTCTGAAT+CGG | - | chr8.2:4618158-4618177 | None:intergenic | 30.0% | |
| TATTGCTATAGCAAAATCGA+AGG | + | chr8.2:4619194-4619213 | MS.gene58067:CDS | 30.0% | |
| TGGAATGAAATCAAAATCTC+CGG | - | chr8.2:4618011-4618030 | None:intergenic | 30.0% | |
| TTTGTTGAGGTTCATTTGTA+TGG | + | chr8.2:4618403-4618422 | MS.gene58067:intron | 30.0% | |
| ! | ACTCTTTTACTCCAATTTCA+GGG | - | chr8.2:4618342-4618361 | None:intergenic | 30.0% |
| ! | GACATTTTCTCTTTTCTTTC+CGG | - | chr8.2:4618554-4618573 | None:intergenic | 30.0% |
| ! | TACTCTTTTACTCCAATTTC+AGG | - | chr8.2:4618343-4618362 | None:intergenic | 30.0% |
| ! | TAGATCCTTTTCCAAATCAA+TGG | + | chr8.2:4619080-4619099 | MS.gene58067:CDS | 30.0% |
| ! | TCAATAATAGAAGATGATGG+TGG | - | chr8.2:4617878-4617897 | None:intergenic | 30.0% |
| !! | CATAACGGATTTGCTATATA+GGG | + | chr8.2:4618639-4618658 | MS.gene58067:CDS | 30.0% |
| !! | TCATAACGGATTTGCTATAT+AGG | + | chr8.2:4618638-4618657 | MS.gene58067:CDS | 30.0% |
| AAGGCCAATATACCTCAAAA+TGG | + | chr8.2:4619213-4619232 | MS.gene58067:CDS | 35.0% | |
| AAGTTGTGACCAAGAAGATT+AGG | - | chr8.2:4619336-4619355 | None:intergenic | 35.0% | |
| AATCGACTGTTGGAATATCA+AGG | + | chr8.2:4618746-4618765 | MS.gene58067:CDS | 35.0% | |
| AATGAACCTCAACAAAAGGA+TGG | - | chr8.2:4618399-4618418 | None:intergenic | 35.0% | |
| ACAGTTCAGGAGGTAAATTT+CGG | + | chr8.2:4618893-4618912 | MS.gene58067:CDS | 35.0% | |
| AGAAGATTAGGATGCACTAA+CGG | - | chr8.2:4619324-4619343 | None:intergenic | 35.0% | |
| AGTAGAAGAACTCAAAGAAG+AGG | + | chr8.2:4618612-4618631 | MS.gene58067:CDS | 35.0% | |
| ATCGACTGTTGGAATATCAA+GGG | + | chr8.2:4618747-4618766 | MS.gene58067:CDS | 35.0% | |
| ATGAAATCAAAATCTCCGGT+TGG | - | chr8.2:4618007-4618026 | None:intergenic | 35.0% | |
| ATGAACCTCAACAAAAGGAT+GGG | - | chr8.2:4618398-4618417 | None:intergenic | 35.0% | |
| CAAAGAAGAGGGTTTCATAA+CGG | + | chr8.2:4618624-4618643 | MS.gene58067:CDS | 35.0% | |
| CAATATACCTCAAAATGGTG+AGG | + | chr8.2:4619218-4619237 | MS.gene58067:CDS | 35.0% | |
| CAGATCATCAACAGAATTCA+AGG | + | chr8.2:4618852-4618871 | MS.gene58067:CDS | 35.0% | |
| CATTGCTTCAATATCTGATG+TGG | + | chr8.2:4618969-4618988 | MS.gene58067:CDS | 35.0% | |
| GAATTTGAGGGGTTTATGAA+TGG | - | chr8.2:4617831-4617850 | None:intergenic | 35.0% | |
| GCAGAAAATCTTACCTTAGT+TGG | + | chr8.2:4619039-4619058 | MS.gene58067:CDS | 35.0% | |
| GTAGAAGAACTCAAAGAAGA+GGG | + | chr8.2:4618613-4618632 | MS.gene58067:CDS | 35.0% | |
| TCAGATATTGAAGCAATGAC+GGG | - | chr8.2:4618967-4618986 | None:intergenic | 35.0% | |
| TCCAAAATTTGAACACTGGT+TGG | + | chr8.2:4618245-4618264 | MS.gene58067:intron | 35.0% | |
| TGATATTATCCCCAACTTGA+AGG | + | chr8.2:4618663-4618682 | MS.gene58067:CDS | 35.0% | |
| TGGACTAAAAGAACCAACTA+AGG | - | chr8.2:4619055-4619074 | None:intergenic | 35.0% | |
| TTAGTGCATCCTAATCTTCT+TGG | + | chr8.2:4619324-4619343 | MS.gene58067:CDS | 35.0% | |
| TTCGGGCATCTAATTATATG+TGG | + | chr8.2:4618911-4618930 | MS.gene58067:CDS | 35.0% | |
| TTTGCTTATGTCCCTGAAAT+TGG | + | chr8.2:4618328-4618347 | MS.gene58067:intron | 35.0% | |
| ! | AAGGATGTTGATTATCCAAC+CGG | + | chr8.2:4617989-4618008 | MS.gene58067:CDS | 35.0% |
| ! | ATTTTCTCTTTTCTTTCCGG+TGG | - | chr8.2:4618551-4618570 | None:intergenic | 35.0% |
| ! | CAAAATTTGAACACTGGTTG+GGG | + | chr8.2:4618247-4618266 | MS.gene58067:intron | 35.0% |
| ! | CCAAAATTTGAACACTGGTT+GGG | + | chr8.2:4618246-4618265 | MS.gene58067:intron | 35.0% |
| ! | CTTTTCCAAATCAATGGAAG+AGG | + | chr8.2:4619086-4619105 | MS.gene58067:CDS | 35.0% |
| ! | TTTGATTTCATTCCACACTC+TGG | + | chr8.2:4618016-4618035 | MS.gene58067:CDS | 35.0% |
| !! | ATAATAGAAGATGATGGTGG+CGG | - | chr8.2:4617875-4617894 | None:intergenic | 35.0% |
| !! | CACTTATTTTCCTCTTCTTC+CGG | + | chr8.2:4617965-4617984 | MS.gene58067:CDS | 35.0% |
| !! | CTCTTCCATTGATTTGGAAA+AGG | - | chr8.2:4619088-4619107 | None:intergenic | 35.0% |
| !!! | CTCACCATTTTGAGGTATAT+TGG | - | chr8.2:4619220-4619239 | None:intergenic | 35.0% |
| ATTGTCCGAATTGACAGTTC+AGG | + | chr8.2:4618880-4618899 | MS.gene58067:CDS | 40.0% | |
| CAGTTCAGGAGGTAAATTTC+GGG | + | chr8.2:4618894-4618913 | MS.gene58067:CDS | 40.0% | |
| CGAGACAACAACTGCATTAA+TGG | + | chr8.2:4618486-4618505 | MS.gene58067:CDS | 40.0% | |
| CGGAAGAAGAGGAAAATAAG+TGG | - | chr8.2:4617967-4617986 | None:intergenic | 40.0% | |
| GAAGATTAGGATGCACTAAC+GGG | - | chr8.2:4619323-4619342 | None:intergenic | 40.0% | |
| GATGTAGTATCTTCTTCCAC+CGG | + | chr8.2:4618532-4618551 | MS.gene58067:CDS | 40.0% | |
| TACCTCCTGAACTGTCAATT+CGG | - | chr8.2:4618888-4618907 | None:intergenic | 40.0% | |
| TGCAGGATACTACTTAGCAA+CGG | + | chr8.2:4618999-4619018 | MS.gene58067:CDS | 40.0% | |
| TGGATAATCAACATCCTTGC+CGG | - | chr8.2:4617987-4618006 | None:intergenic | 40.0% | |
| TTAATGCAGTTGTTGTCTCG+TGG | - | chr8.2:4618486-4618505 | None:intergenic | 40.0% | |
| TTATCCCCAACTTGAAGGAA+AGG | + | chr8.2:4618668-4618687 | MS.gene58067:CDS | 40.0% | |
| ! | AGAGTAACCTCACCATTTTG+AGG | - | chr8.2:4619228-4619247 | None:intergenic | 40.0% |
| ! | ATATGCCCATCCTTTTGTTG+AGG | + | chr8.2:4618390-4618409 | MS.gene58067:intron | 40.0% |
| ! | CCCAACCAGTGTTCAAATTT+TGG | - | chr8.2:4618249-4618268 | None:intergenic | 40.0% |
| ! | GTTTGGTTGATGCTATTGGT+GGG | + | chr8.2:4619160-4619179 | MS.gene58067:CDS | 40.0% |
| ! | TGGAACCTCTTCCATTGATT+TGG | - | chr8.2:4619094-4619113 | None:intergenic | 40.0% |
| !!! | TGAAGCAATGACGGGTTTTT+CGG | - | chr8.2:4618959-4618978 | None:intergenic | 40.0% |
| AGCAGGTGATATACAGCGAT+CGG | - | chr8.2:4617807-4617826 | None:intergenic | 45.0% | |
| AGGGGTTTATGAATGGTAGC+AGG | - | chr8.2:4617824-4617843 | None:intergenic | 45.0% | |
| AGGGTCTATCAGTAGTGCAA+CGG | + | chr8.2:4618804-4618823 | MS.gene58067:CDS | 45.0% | |
| ATACCTCTGAATCGGTGTGT+AGG | - | chr8.2:4618150-4618169 | None:intergenic | 45.0% | |
| ATAGCCATCATTCGAGTCTC+AGG | + | chr8.2:4618784-4618803 | MS.gene58067:CDS | 45.0% | |
| ATCAATGGAAGAGGTTCCAC+AGG | + | chr8.2:4619095-4619114 | MS.gene58067:CDS | 45.0% | |
| ATTAAATTCCTCCTCCTCCC+AGG | - | chr8.2:4619283-4619302 | None:intergenic | 45.0% | |
| CAACTTGAAGGAAAGGCTTG+GGG | + | chr8.2:4618675-4618694 | MS.gene58067:CDS | 45.0% | |
| CCAACTTGAAGGAAAGGCTT+GGG | + | chr8.2:4618674-4618693 | MS.gene58067:CDS | 45.0% | |
| CGCGTTAGTAAATCGACTGT+TGG | + | chr8.2:4618736-4618755 | MS.gene58067:CDS | 45.0% | |
| GCAGGATACTACTTAGCAAC+GGG | + | chr8.2:4619000-4619019 | MS.gene58067:CDS | 45.0% | |
| TACCTCTGAATCGGTGTGTA+GGG | - | chr8.2:4618149-4618168 | None:intergenic | 45.0% | |
| TACTTCTTCAAGCCAGAGTG+TGG | - | chr8.2:4618031-4618050 | None:intergenic | 45.0% | |
| TAGCCATCATTCGAGTCTCA+GGG | + | chr8.2:4618785-4618804 | MS.gene58067:CDS | 45.0% | |
| TCAATGGAAGAGGTTCCACA+GGG | + | chr8.2:4619096-4619115 | MS.gene58067:CDS | 45.0% | |
| TTAAATTCCTCCTCCTCCCA+GGG | - | chr8.2:4619282-4619301 | None:intergenic | 45.0% | |
| ! | ATTTTCCTCTTCTTCCGGCA+AGG | + | chr8.2:4617970-4617989 | MS.gene58067:CDS | 45.0% |
| ! | CCAAGCCTTTCCTTCAAGTT+GGG | - | chr8.2:4618676-4618695 | None:intergenic | 45.0% |
| ! | CGTTTTTAACACCCTCTGAG+GGG | - | chr8.2:4618084-4618103 | None:intergenic | 45.0% |
| ! | GGTTTGGTTGATGCTATTGG+TGG | + | chr8.2:4619159-4619178 | MS.gene58067:CDS | 45.0% |
| !! | CAAGCCTTTCCTTCAAGTTG+GGG | - | chr8.2:4618675-4618694 | None:intergenic | 45.0% |
| !! | CCCTCAGAGGGTGTTAAAAA+CGG | + | chr8.2:4618082-4618101 | MS.gene58067:CDS | 45.0% |
| !! | CCGTTTTTAACACCCTCTGA+GGG | - | chr8.2:4618085-4618104 | None:intergenic | 45.0% |
| !! | CTCGGTTTGGTTGATGCTAT+TGG | + | chr8.2:4619156-4619175 | MS.gene58067:CDS | 45.0% |
| !! | CTCTGGCTTGAAGAAGTATC+TGG | + | chr8.2:4618033-4618052 | MS.gene58067:CDS | 45.0% |
| !! | TAGGGTGTCGGATATTATGC+CGG | - | chr8.2:4618131-4618150 | None:intergenic | 45.0% |
| AACATCCTTGCCGGAAGAAG+AGG | - | chr8.2:4617978-4617997 | None:intergenic | 50.0% | |
| ACCCTGTCCAACTTTACCCT+GGG | + | chr8.2:4619263-4619282 | MS.gene58067:CDS | 50.0% | |
| AGACCCTGAGACTCGAATGA+TGG | - | chr8.2:4618791-4618810 | None:intergenic | 50.0% | |
| CAATGGAAGAGGTTCCACAG+GGG | + | chr8.2:4619097-4619116 | MS.gene58067:CDS | 50.0% | |
| CCCAACTTGAAGGAAAGGCT+TGG | + | chr8.2:4618673-4618692 | MS.gene58067:CDS | 50.0% | |
| CCCAAGCCTTTCCTTCAAGT+TGG | - | chr8.2:4618677-4618696 | None:intergenic | 50.0% | |
| CTCGTGCGGTAGAATTTGAG+GGG | - | chr8.2:4617842-4617861 | None:intergenic | 50.0% | |
| GCTCGTGCGGTAGAATTTGA+GGG | - | chr8.2:4617843-4617862 | None:intergenic | 50.0% | |
| GGTAAGGACGCAACATCTCT+CGG | + | chr8.2:4619138-4619157 | MS.gene58067:CDS | 50.0% | |
| GTCCGAATTGACAGTTCAGG+AGG | + | chr8.2:4618883-4618902 | MS.gene58067:CDS | 50.0% | |
| TACTACTTAGCAACGGGAGC+AGG | + | chr8.2:4619006-4619025 | MS.gene58067:CDS | 50.0% | |
| TCCCAGGGTAAAGTTGGACA+GGG | - | chr8.2:4619267-4619286 | None:intergenic | 50.0% | |
| TCTGATGTGGCAACAAGTGC+AGG | + | chr8.2:4618982-4619001 | MS.gene58067:CDS | 50.0% | |
| TGAATCGGTGTGTAGGGTGT+CGG | - | chr8.2:4618143-4618162 | None:intergenic | 50.0% | |
| !!! | GCCGTTTTTAACACCCTCTG+AGG | - | chr8.2:4618086-4618105 | None:intergenic | 50.0% |
| AACTTTACCCTGGGAGGAGG+AGG | + | chr8.2:4619272-4619291 | MS.gene58067:CDS | 55.0% | |
| AAGAGGTTCCACAGGGGAAG+GGG | + | chr8.2:4619103-4619122 | MS.gene58067:CDS | 55.0% | |
| CACCCTGTCCAACTTTACCC+TGG | + | chr8.2:4619262-4619281 | MS.gene58067:CDS | 55.0% | |
| CGCTCGTGCGGTAGAATTTG+AGG | - | chr8.2:4617844-4617863 | None:intergenic | 55.0% | |
| CTCCCAGGGTAAAGTTGGAC+AGG | - | chr8.2:4619268-4619287 | None:intergenic | 55.0% | |
| CTGTCCAACTTTACCCTGGG+AGG | + | chr8.2:4619266-4619285 | MS.gene58067:CDS | 55.0% | |
| GAAGAGGTTCCACAGGGGAA+GGG | + | chr8.2:4619102-4619121 | MS.gene58067:CDS | 55.0% | |
| GGACGCAACATCTCTCGGTT+TGG | + | chr8.2:4619143-4619162 | MS.gene58067:CDS | 55.0% | |
| TCCAACTTTACCCTGGGAGG+AGG | + | chr8.2:4619269-4619288 | MS.gene58067:CDS | 55.0% | |
| TCCTCCTCCCAGGGTAAAGT+TGG | - | chr8.2:4619273-4619292 | None:intergenic | 55.0% | |
| !! | CACCCTACACACCGATTCAG+AGG | + | chr8.2:4618144-4618163 | MS.gene58067:CDS | 55.0% |
| !! | GGGGAAGGTTTGGACTGGTA+AGG | + | chr8.2:4619122-4619141 | MS.gene58067:CDS | 55.0% |
| CAAACCTTCCCCTTCCCCTG+TGG | - | chr8.2:4619114-4619133 | None:intergenic | 60.0% | |
| CACAGGGGAAGGGGAAGGTT+TGG | + | chr8.2:4619112-4619131 | MS.gene58067:CDS | 60.0% | |
| CTGCTAGCACTCCCCTCAGA+GGG | + | chr8.2:4618070-4618089 | MS.gene58067:CDS | 60.0% | |
| GCGGTGATATTGCGCTCGTG+CGG | - | chr8.2:4617856-4617875 | None:intergenic | 60.0% | |
| GGAAGAGGTTCCACAGGGGA+AGG | + | chr8.2:4619101-4619120 | MS.gene58067:CDS | 60.0% | |
| GGGAAGGGGAAGGTTTGGAC+TGG | + | chr8.2:4619117-4619136 | MS.gene58067:CDS | 60.0% | |
| TCTGCTAGCACTCCCCTCAG+AGG | + | chr8.2:4618069-4618088 | MS.gene58067:CDS | 60.0% | |
| GGTTCCACAGGGGAAGGGGA+AGG | + | chr8.2:4619107-4619126 | MS.gene58067:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.2 | gene | 4617800 | 4619374 | 4617800 | ID=MS.gene58067 |
| chr8.2 | mRNA | 4617800 | 4619374 | 4617800 | ID=MS.gene58067.t1;Parent=MS.gene58067 |
| chr8.2 | exon | 4617800 | 4618165 | 4617800 | ID=MS.gene58067.t1.exon1;Parent=MS.gene58067.t1 |
| chr8.2 | CDS | 4617800 | 4618165 | 4617800 | ID=cds.MS.gene58067.t1;Parent=MS.gene58067.t1 |
| chr8.2 | exon | 4618457 | 4619374 | 4618457 | ID=MS.gene58067.t1.exon2;Parent=MS.gene58067.t1 |
| chr8.2 | CDS | 4618457 | 4619374 | 4618457 | ID=cds.MS.gene58067.t1;Parent=MS.gene58067.t1 |
| Gene Sequence |
| Protein sequence |
