Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene58163.t1 | XP_003630121.1 | 97.5 | 244 | 6 | 0 | 1 | 244 | 1 | 244 | 2.40E-121 | 444.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene58163.t1 | Q9SJ12 | 68.9 | 244 | 72 | 2 | 1 | 244 | 1 | 240 | 8.2e-86 | 318.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene58163.t1 | B7FH20 | 97.5 | 244 | 6 | 0 | 1 | 244 | 1 | 244 | 1.7e-121 | 444.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene057094 | MS.gene58163 | 0.802604 | 5.18E-49 | -1.69E-46 |
| MS.gene05809 | MS.gene58163 | 0.812842 | 3.46E-51 | -1.69E-46 |
| MS.gene058906 | MS.gene58163 | 0.837409 | 5.29E-57 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene58163.t1 | MTR_8g092040 | 97.541 | 244 | 6 | 0 | 1 | 244 | 1 | 244 | 5.83e-170 | 468 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene58163.t1 | AT2G21870 | 68.852 | 244 | 72 | 2 | 1 | 244 | 1 | 240 | 9.88e-117 | 333 |
| MS.gene58163.t1 | AT2G21870 | 69.058 | 223 | 66 | 1 | 1 | 223 | 1 | 220 | 1.84e-107 | 309 |
Find 61 sgRNAs with CRISPR-Local
Find 247 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTTCTTATCATTTCTCAAT+AGG | 0.249875 | 4.2:+10130629 | None:intergenic |
| AAATGAGGAACAAACCAATT+TGG | 0.277914 | 4.2:+10133105 | None:intergenic |
| TTTCTTATCATTTCTCAATA+GGG | 0.290599 | 4.2:+10130630 | None:intergenic |
| GCAACGGGAGTTTGCTGTTC+CGG | 0.291400 | 4.2:-10132573 | MS.gene58163:CDS |
| GGAACAAACCAATTTGGATT+TGG | 0.309292 | 4.2:+10133111 | None:intergenic |
| CCTCGCATCCAAATCCAAAT+TGG | 0.317568 | 4.2:-10133119 | MS.gene58163:intron |
| CTACTCTTGGTATAGCTGTA+TGG | 0.323573 | 4.2:-10132611 | MS.gene58163:intron |
| CGGTTCGCCACTTTGCTAAA+GGG | 0.331571 | 4.2:-10132553 | MS.gene58163:CDS |
| GAAAGGAATGGACCTTCTTT+TGG | 0.332132 | 4.2:-10130611 | MS.gene58163:CDS |
| GGCTTTAATGTTTGATGCAT+TGG | 0.345705 | 4.2:-10130680 | MS.gene58163:CDS |
| GTCCGAACTTCCTGCCCTTA+AGG | 0.348865 | 4.2:-10132522 | MS.gene58163:CDS |
| CCGGTTCGCCACTTTGCTAA+AGG | 0.349850 | 4.2:-10132554 | MS.gene58163:CDS |
| CTTGGTTCTTATTTCCTTCA+AGG | 0.354224 | 4.2:+10131861 | None:intergenic |
| AGACTGCCATCGGAATATTA+AGG | 0.383428 | 4.2:-10132201 | MS.gene58163:CDS |
| GGAACTCACCGTCTCCCTTA+AGG | 0.389313 | 4.2:+10132507 | None:intergenic |
| TCCCTTAAGGGCAGGAAGTT+CGG | 0.389587 | 4.2:+10132520 | None:intergenic |
| GCAGCTGGAGGAGTTGAAAA+AGG | 0.399996 | 4.2:-10129935 | MS.gene58163:CDS |
| GAAACAGCAGCTGGATCCTC+TGG | 0.403842 | 4.2:+10132157 | None:intergenic |
| AAAAGATAAGTTCGAGCATC+AGG | 0.404959 | 4.2:+10131886 | None:intergenic |
| TCCGAACTTCCTGCCCTTAA+GGG | 0.407807 | 4.2:-10132521 | MS.gene58163:CDS |
| TCCAGCTGCTCTTCGTACTT+TGG | 0.409891 | 4.2:+10129976 | None:intergenic |
| CAACTCCTCCAGCTGCGCTT+TGG | 0.413594 | 4.2:+10129942 | None:intergenic |
| TGGTCAAATGCTTCTGCAAC+GGG | 0.416121 | 4.2:-10132588 | MS.gene58163:CDS |
| CCATTTCAGGGAGGAATTCA+AGG | 0.418093 | 4.2:-10129521 | MS.gene58163:intron |
| GAACTCACCGTCTCCCTTAA+GGG | 0.425131 | 4.2:+10132508 | None:intergenic |
| TAAAATAGCCAAAGCGCAGC+TGG | 0.425620 | 4.2:-10129950 | MS.gene58163:CDS |
| TGCATTGGAGAAAATTGAAA+AGG | 0.441090 | 4.2:-10130665 | MS.gene58163:CDS |
| GGCAGGAAGTTCGGACCCTT+CGG | 0.446173 | 4.2:+10132529 | None:intergenic |
| TTCTTATCATTTCTCAATAG+GGG | 0.468292 | 4.2:+10130631 | None:intergenic |
| CCTTTAGCAAAGTGGCGAAC+CGG | 0.468347 | 4.2:+10132554 | None:intergenic |
| ACGTCAAAACTTTGGACATC+CGG | 0.475716 | 4.2:-10129480 | MS.gene58163:CDS |
| AGAGGTCTTACAGATGATCT+TGG | 0.479321 | 4.2:-10130709 | MS.gene58163:CDS |
| AGCTGGATCCTCTGGAGCTA+TGG | 0.481115 | 4.2:+10132165 | None:intergenic |
| GGCGGTTGACGTCAAAACTT+TGG | 0.482257 | 4.2:-10129488 | MS.gene58163:CDS |
| GCCAAAGTACGAAGAGCAGC+TGG | 0.499498 | 4.2:-10129977 | MS.gene58163:CDS |
| CAATGGAAACTCAAAAGAAA+AGG | 0.507343 | 4.2:-10129900 | MS.gene58163:intron |
| CTCCTTCCTTAATATTCCGA+TGG | 0.511981 | 4.2:+10132195 | None:intergenic |
| CACTTTGCTAAAGGGTCCGA+AGG | 0.513405 | 4.2:-10132545 | MS.gene58163:CDS |
| CAGGGCAAACTTGTTGTCAG+TGG | 0.523119 | 4.2:-10131953 | MS.gene58163:CDS |
| TATCAAACTCTGCCAAAAGA+AGG | 0.529881 | 4.2:+10130599 | None:intergenic |
| AAAGGATGCTGTTGAGGCAA+TGG | 0.541346 | 4.2:-10129917 | MS.gene58163:CDS |
| GAGAAATGATAAGAAAGGAA+TGG | 0.544368 | 4.2:-10130623 | MS.gene58163:CDS |
| TCACCGTCTCCCTTAAGGGC+AGG | 0.548905 | 4.2:+10132512 | None:intergenic |
| GCATATTGAGAAACAGCAGC+TGG | 0.566573 | 4.2:+10132148 | None:intergenic |
| GTGGTCAAATGCTTCTGCAA+CGG | 0.569422 | 4.2:-10132589 | MS.gene58163:CDS |
| AACAAATTTGAGACTGCCAT+CGG | 0.570816 | 4.2:-10132211 | MS.gene58163:CDS |
| TACAGATGATCTTGGAGCAG+AGG | 0.572998 | 4.2:-10130701 | MS.gene58163:CDS |
| TGCTGTTTCTCAATATGCGA+AGG | 0.586233 | 4.2:-10132143 | MS.gene58163:CDS |
| CTTCGGACCCTTTAGCAAAG+TGG | 0.597464 | 4.2:+10132546 | None:intergenic |
| GTCAGTGGCTCAAGATGTCA+AGG | 0.601887 | 4.2:-10131938 | MS.gene58163:CDS |
| CCAATTTGGATTTGGATGCG+AGG | 0.606244 | 4.2:+10133119 | None:intergenic |
| CTCTTGGTATAGCTGTATGG+TGG | 0.614864 | 4.2:-10132608 | MS.gene58163:intron |
| GAAGATCACCATAGCTCCAG+AGG | 0.616565 | 4.2:-10132173 | MS.gene58163:CDS |
| CTTCCTGCCCTTAAGGGAGA+CGG | 0.620584 | 4.2:-10132515 | MS.gene58163:intron |
| TGCCATCGGAATATTAAGGA+AGG | 0.622802 | 4.2:-10132197 | MS.gene58163:CDS |
| GGAATTCAAGGATGAGCCTG+CGG | 0.631780 | 4.2:-10129509 | MS.gene58163:CDS |
| CTATTGAGAAATGATAAGAA+AGG | 0.632519 | 4.2:-10130628 | MS.gene58163:CDS |
| AATAGCCAAAGCGCAGCTGG+AGG | 0.651823 | 4.2:-10129947 | MS.gene58163:CDS |
| ATTCAAGGATGAGCCTGCGG+CGG | 0.666945 | 4.2:-10129506 | MS.gene58163:CDS |
| GAGGCGTGAAGCGAGTGCCA+TGG | 0.683570 | 4.2:+10133138 | None:intergenic |
| ACTTTGCTAAAGGGTCCGAA+GGG | 0.685539 | 4.2:-10132544 | MS.gene58163:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATATTAAAAAAAAAAAAGC+AGG | + | chr4.2:10132827-10132846 | None:intergenic | 10.0% |
| !! | TTTATTAAATTAAATGTGTT+GGG | - | chr4.2:10129916-10129935 | MS.gene58163:CDS | 10.0% |
| !!! | AAAAAATAATTTTTATGATG+AGG | + | chr4.2:10129821-10129840 | None:intergenic | 10.0% |
| !!! | GATTTTTAAATATTATTTTC+TGG | - | chr4.2:10132145-10132164 | MS.gene58163:CDS | 10.0% |
| !!! | TATAATTACTTTACTTATTT+TGG | - | chr4.2:10132536-10132555 | MS.gene58163:CDS | 10.0% |
| !! | AAAAAGAATAGAAATGAAAT+CGG | + | chr4.2:10129544-10129563 | None:intergenic | 15.0% |
| !! | AGGAAAAATAAATCATATAA+TGG | + | chr4.2:10133057-10133076 | None:intergenic | 15.0% |
| !! | GATAAATAATTAAACACTAT+AGG | + | chr4.2:10132488-10132507 | None:intergenic | 15.0% |
| !! | GTTTATTAAATTAAATGTGT+TGG | - | chr4.2:10129915-10129934 | MS.gene58163:CDS | 15.0% |
| !!! | TGTTTCAAATCAAATATTTT+AGG | - | chr4.2:10131191-10131210 | MS.gene58163:intron | 15.0% |
| !! | AATAACCTAATTAGACAAAA+GGG | + | chr4.2:10129732-10129751 | None:intergenic | 20.0% |
| !! | AATAATAACAACAACAATTC+AGG | + | chr4.2:10131689-10131708 | None:intergenic | 20.0% |
| !! | ATAATAACAACAACAATTCA+GGG | + | chr4.2:10131688-10131707 | None:intergenic | 20.0% |
| !! | ATATATACAAATGAGAGAAA+AGG | - | chr4.2:10131785-10131804 | MS.gene58163:intron | 20.0% |
| !! | ATTTAAATGTTTACTTTGCT+AGG | - | chr4.2:10132456-10132475 | MS.gene58163:intron | 20.0% |
| !! | ATTTCTATTGAAAATCAAAG+TGG | + | chr4.2:10130279-10130298 | None:intergenic | 20.0% |
| !! | TAATAACCTAATTAGACAAA+AGG | + | chr4.2:10129733-10129752 | None:intergenic | 20.0% |
| !! | TATATACAAATGAGAGAAAA+GGG | - | chr4.2:10131786-10131805 | MS.gene58163:intron | 20.0% |
| !! | TTTAAATGTTTACTTTGCTA+GGG | - | chr4.2:10132457-10132476 | MS.gene58163:intron | 20.0% |
| !! | TTTCTTATCATTTCTCAATA+GGG | + | chr4.2:10131977-10131996 | None:intergenic | 20.0% |
| !!! | AAATTAACTGATTTTTCCAT+TGG | - | chr4.2:10129674-10129693 | MS.gene58163:intron | 20.0% |
| !!! | ATATTTTTTGTTTCGAATAG+TGG | + | chr4.2:10129649-10129668 | None:intergenic | 20.0% |
| !!! | GAAACTGAATATAATTTTAC+TGG | - | chr4.2:10129876-10129895 | MS.gene58163:intron | 20.0% |
| !!! | TATATTATATGAGTATCGTA+GGG | - | chr4.2:10130144-10130163 | MS.gene58163:intron | 20.0% |
| !!! | TTATATTATATGAGTATCGT+AGG | - | chr4.2:10130143-10130162 | MS.gene58163:intron | 20.0% |
| ! | AAAATACAAGTCCAAAGTAA+AGG | + | chr4.2:10130123-10130142 | None:intergenic | 25.0% |
| ! | AAAATAGAACATCACATACT+TGG | + | chr4.2:10130764-10130783 | None:intergenic | 25.0% |
| ! | AAAGATTACGAGATATAAGT+TGG | + | chr4.2:10130564-10130583 | None:intergenic | 25.0% |
| ! | AAATACAAGTCCAAAGTAAA+GGG | + | chr4.2:10130122-10130141 | None:intergenic | 25.0% |
| ! | AACTAAATTGAATCCACAAA+AGG | + | chr4.2:10132409-10132428 | None:intergenic | 25.0% |
| ! | AATCGAGATTTAGGAAATAT+GGG | - | chr4.2:10131481-10131500 | MS.gene58163:intron | 25.0% |
| ! | ACAAAAAAAAAATCAGTAGG+TGG | + | chr4.2:10129951-10129970 | None:intergenic | 25.0% |
| ! | AGACTATGATAAAAACAACA+AGG | + | chr4.2:10130525-10130544 | None:intergenic | 25.0% |
| ! | ATGCCATAAACTCTAATATT+GGG | - | chr4.2:10129586-10129605 | MS.gene58163:intron | 25.0% |
| ! | ATTATTTACTAGTTGCATTG+CGG | - | chr4.2:10129848-10129867 | MS.gene58163:intron | 25.0% |
| ! | CTATTGAGAAATGATAAGAA+AGG | - | chr4.2:10131976-10131995 | MS.gene58163:intron | 25.0% |
| ! | CTTTCTTATCATTTCTCAAT+AGG | + | chr4.2:10131978-10131997 | None:intergenic | 25.0% |
| ! | GAAAAAAGAAGAGAGAATAT+AGG | - | chr4.2:10131320-10131339 | MS.gene58163:intron | 25.0% |
| ! | GATGCTGAAAAACATTTATT+TGG | - | chr4.2:10130362-10130381 | MS.gene58163:intron | 25.0% |
| ! | GCAACAAAAAAAAAATCAGT+AGG | + | chr4.2:10129954-10129973 | None:intergenic | 25.0% |
| ! | GCACATTATCTAGTTAAAAA+TGG | + | chr4.2:10130792-10130811 | None:intergenic | 25.0% |
| ! | TATACCAAGAGTAGAAAATT+GGG | + | chr4.2:10129987-10130006 | None:intergenic | 25.0% |
| ! | TATCATTTCAATCGAGATTT+AGG | - | chr4.2:10131472-10131491 | MS.gene58163:intron | 25.0% |
| ! | TATGTTGTCATGCAATTTAA+CGG | - | chr4.2:10132101-10132120 | MS.gene58163:intron | 25.0% |
| ! | TGATAAAAACAACAAGGTAA+AGG | + | chr4.2:10130519-10130538 | None:intergenic | 25.0% |
| ! | TGATTTATGCAAAGAAGAAA+AGG | - | chr4.2:10130248-10130267 | MS.gene58163:intron | 25.0% |
| ! | TGGAATATATGAATTTCACA+TGG | - | chr4.2:10132945-10132964 | MS.gene58163:intron | 25.0% |
| ! | TTCTTATCATTTCTCAATAG+GGG | + | chr4.2:10131976-10131995 | None:intergenic | 25.0% |
| !! | TATTTTGCCTCCTAAAAAAA+GGG | + | chr4.2:10132744-10132763 | None:intergenic | 25.0% |
| !! | TTATTCCCTTTTGTCTAATT+AGG | - | chr4.2:10129724-10129743 | MS.gene58163:intron | 25.0% |
| !! | TTTCCAAATATTGCATTTTG+TGG | - | chr4.2:10132325-10132344 | MS.gene58163:intron | 25.0% |
| !!! | AATTTCAGTATTTTTGACGA+AGG | + | chr4.2:10131162-10131181 | None:intergenic | 25.0% |
| !!! | ATTTTTCTACTTATCGATTG+AGG | - | chr4.2:10131039-10131058 | MS.gene58163:intron | 25.0% |
| !!! | TCTTCTTTTTTCTGTTTCAT+CGG | + | chr4.2:10131312-10131331 | None:intergenic | 25.0% |
| !!! | TTATTTTGCCTCCTAAAAAA+AGG | + | chr4.2:10132745-10132764 | None:intergenic | 25.0% |
| !!! | TTTTTCTACTTATCGATTGA+GGG | - | chr4.2:10131040-10131059 | MS.gene58163:intron | 25.0% |
| AAAAAAAAAGCAGGAGAATC+AGG | + | chr4.2:10132818-10132837 | None:intergenic | 30.0% | |
| AAAAAAAAGCAGGAGAATCA+GGG | + | chr4.2:10132817-10132836 | None:intergenic | 30.0% | |
| AAATGAGGAACAAACCAATT+TGG | + | chr4.2:10129502-10129521 | None:intergenic | 30.0% | |
| AATACAAGTCCAAAGTAAAG+GGG | + | chr4.2:10130121-10130140 | None:intergenic | 30.0% | |
| AATCAGTACCATAAGAAAGA+AGG | - | chr4.2:10131283-10131302 | MS.gene58163:intron | 30.0% | |
| AGAACCACATGTTTAAAAGA+AGG | + | chr4.2:10131621-10131640 | None:intergenic | 30.0% | |
| AGCTTGAAAAGATACAACAT+AGG | + | chr4.2:10132057-10132076 | None:intergenic | 30.0% | |
| AGTAGTATAAAATGTCCCTA+TGG | - | chr4.2:10132912-10132931 | MS.gene58163:intron | 30.0% | |
| ATCGAGATTTAGGAAATATG+GGG | - | chr4.2:10131482-10131501 | MS.gene58163:intron | 30.0% | |
| ATGGCATGAAAATCAGAAAT+TGG | + | chr4.2:10129573-10129592 | None:intergenic | 30.0% | |
| ATGTTGTCATGCAATTTAAC+GGG | - | chr4.2:10132102-10132121 | MS.gene58163:intron | 30.0% | |
| ATTCCAAATTCAAAAGCCAT+AGG | + | chr4.2:10132931-10132950 | None:intergenic | 30.0% | |
| ATTTGAGCAGAATGAATTAC+TGG | - | chr4.2:10132511-10132530 | MS.gene58163:intron | 30.0% | |
| CAATCGAGATTTAGGAAATA+TGG | - | chr4.2:10131480-10131499 | MS.gene58163:intron | 30.0% | |
| CAATGGAAACTCAAAAGAAA+AGG | - | chr4.2:10132704-10132723 | MS.gene58163:intron | 30.0% | |
| CAGAAGTTAGAACTTAGAAA+TGG | + | chr4.2:10132780-10132799 | None:intergenic | 30.0% | |
| CATGCCATAAACTCTAATAT+TGG | - | chr4.2:10129585-10129604 | MS.gene58163:intron | 30.0% | |
| CCTATTTCCAACAAATCAAT+TGG | + | chr4.2:10132972-10132991 | None:intergenic | 30.0% | |
| CTATACCAAGAGTAGAAAAT+TGG | + | chr4.2:10129988-10130007 | None:intergenic | 30.0% | |
| CTATCTTCAAAGTTAGAATC+AGG | + | chr4.2:10132894-10132913 | None:intergenic | 30.0% | |
| GAGAAATGATAAGAAAGGAA+TGG | - | chr4.2:10131981-10132000 | MS.gene58163:intron | 30.0% | |
| GAGAATATAGGATAAGCTTA+AGG | - | chr4.2:10131332-10131351 | MS.gene58163:intron | 30.0% | |
| GAGAATGAATAGAAGAAATG+AGG | + | chr4.2:10129517-10129536 | None:intergenic | 30.0% | |
| GATCCCAATATTAGAGTTTA+TGG | + | chr4.2:10129592-10129611 | None:intergenic | 30.0% | |
| GTTTGAAAAGGACAACTAAT+CGG | + | chr4.2:10131742-10131761 | None:intergenic | 30.0% | |
| TCACATTTGCTCATATATCT+GGG | - | chr4.2:10131856-10131875 | MS.gene58163:intron | 30.0% | |
| TCATCAATTATCATTAGCCA+TGG | - | chr4.2:10129795-10129814 | MS.gene58163:intron | 30.0% | |
| TCTCGATTGAAATGATATCA+TGG | + | chr4.2:10131469-10131488 | None:intergenic | 30.0% | |
| TGCATTGGAGAAAATTGAAA+AGG | - | chr4.2:10131939-10131958 | MS.gene58163:CDS | 30.0% | |
| TGGAAATAGGACTATTGTTA+TGG | - | chr4.2:10132982-10133001 | MS.gene58163:intron | 30.0% | |
| TTCCAAATTCAAAAGCCATA+GGG | + | chr4.2:10132930-10132949 | None:intergenic | 30.0% | |
| TTTGAAAAGGACAACTAATC+GGG | + | chr4.2:10131741-10131760 | None:intergenic | 30.0% | |
| TTTGAGCAGAATGAATTACT+GGG | - | chr4.2:10132512-10132531 | MS.gene58163:intron | 30.0% | |
| ! | AACTTATCTTTTGACCTTGA+AGG | - | chr4.2:10130729-10130748 | MS.gene58163:intron | 30.0% |
| ! | GATCATTTTACAACAGAATG+AGG | + | chr4.2:10132190-10132209 | None:intergenic | 30.0% |
| ! | TAATTTTTATGATGAGGCCA+TGG | + | chr4.2:10129815-10129834 | None:intergenic | 30.0% |
| ! | TCGAGTCTTGTAATTTATGA+AGG | - | chr4.2:10132278-10132297 | MS.gene58163:intron | 30.0% |
| !! | ATTTTGTTGTGCATTCTTCA+GGG | - | chr4.2:10130633-10130652 | MS.gene58163:CDS | 30.0% |
| !! | CCAATTGATTTGTTGGAAAT+AGG | - | chr4.2:10132969-10132988 | MS.gene58163:intron | 30.0% |
| !! | TCAGGGTATTCATAATTTTG+AGG | + | chr4.2:10131671-10131690 | None:intergenic | 30.0% |
| !! | TTTGATTTGAAACACACTAC+TGG | + | chr4.2:10131185-10131204 | None:intergenic | 30.0% |
| !!! | TTGAATGCTAGCTTTTGTTT+CGG | - | chr4.2:10132431-10132450 | MS.gene58163:intron | 30.0% |
| AAAAGATAAGTTCGAGCATC+AGG | + | chr4.2:10130721-10130740 | None:intergenic | 35.0% | |
| AAATGTTTACTTTGCTAGGG+AGG | - | chr4.2:10132460-10132479 | MS.gene58163:intron | 35.0% | |
| AAGAATGCACAACAAAATGC+AGG | + | chr4.2:10130631-10130650 | None:intergenic | 35.0% | |
| ACAGACACAACTACATTAAG+TGG | + | chr4.2:10131589-10131608 | None:intergenic | 35.0% | |
| AGATTTAGGAAATATGGGGA+AGG | - | chr4.2:10131486-10131505 | MS.gene58163:intron | 35.0% | |
| ATCGGTTACCTTCTTTCTTA+TGG | + | chr4.2:10131294-10131313 | None:intergenic | 35.0% | |
| CACTTTGACAATGAGAAGAA+AGG | + | chr4.2:10130963-10130982 | None:intergenic | 35.0% | |
| CAGCCACAAAATGCAATATT+TGG | + | chr4.2:10132331-10132350 | None:intergenic | 35.0% | |
| CGGGATACTTTCTATATGTT+TGG | - | chr4.2:10132121-10132140 | MS.gene58163:CDS | 35.0% | |
| GGAACAAACCAATTTGGATT+TGG | + | chr4.2:10129496-10129515 | None:intergenic | 35.0% | |
| GTCACATTTGCTCATATATC+TGG | - | chr4.2:10131855-10131874 | MS.gene58163:intron | 35.0% | |
| TATCAAACTCTGCCAAAAGA+AGG | + | chr4.2:10132008-10132027 | None:intergenic | 35.0% | |
| TCAAAGGGTGAAAAAACAAC+AGG | + | chr4.2:10132569-10132588 | None:intergenic | 35.0% | |
| TCTTAACACTCGAAATCCAA+TGG | + | chr4.2:10129693-10129712 | None:intergenic | 35.0% | |
| TTCGAATTCCAAGTCTAAGA+TGG | + | chr4.2:10132597-10132616 | None:intergenic | 35.0% | |
| ! | AACAAATTTGAGACTGCCAT+CGG | - | chr4.2:10130393-10130412 | MS.gene58163:intron | 35.0% |
| ! | AACGCCTTCTTTTAAACATG+TGG | - | chr4.2:10131614-10131633 | MS.gene58163:intron | 35.0% |
| ! | ATCTGGGTACATTTCTTTTC+AGG | - | chr4.2:10131872-10131891 | MS.gene58163:CDS | 35.0% |
| ! | CGAATAGTGGAATTGAGAAT+CGG | + | chr4.2:10129636-10129655 | None:intergenic | 35.0% |
| ! | CTTGGTTCTTATTTCCTTCA+AGG | + | chr4.2:10130746-10130765 | None:intergenic | 35.0% |
| ! | GGCTTTAATGTTTGATGCAT+TGG | - | chr4.2:10131924-10131943 | MS.gene58163:CDS | 35.0% |
| ! | TGTCAAAGTGCTTTCTCTTA+AGG | - | chr4.2:10130973-10130992 | MS.gene58163:intron | 35.0% |
| !! | ACATGGACCAATTGATTTGT+TGG | - | chr4.2:10132962-10132981 | MS.gene58163:intron | 35.0% |
| !! | AGTATTTTTGACGAAGGTGT+GGG | + | chr4.2:10131156-10131175 | None:intergenic | 35.0% |
| !! | CATTTTGTTGTGCATTCTTC+AGG | - | chr4.2:10130632-10130651 | MS.gene58163:CDS | 35.0% |
| !!! | GGTACTGATTGTTTTGACTT+GGG | + | chr4.2:10131273-10131292 | None:intergenic | 35.0% |
| !!! | GTTGTTTTTTCACCCTTTGA+TGG | - | chr4.2:10132569-10132588 | MS.gene58163:CDS | 35.0% |
| !!! | TGGTACTGATTGTTTTGACT+TGG | + | chr4.2:10131274-10131293 | None:intergenic | 35.0% |
| AAACACCTTTGTTAAGCGCA+TGG | - | chr4.2:10132849-10132868 | MS.gene58163:intron | 40.0% | |
| AAGGGTGAAAAAACAACAGG+AGG | + | chr4.2:10132566-10132585 | None:intergenic | 40.0% | |
| AAGTACCATGCGCTTAACAA+AGG | + | chr4.2:10132857-10132876 | None:intergenic | 40.0% | |
| ACAGATACAGAGTGATTAGG+AGG | + | chr4.2:10131116-10131135 | None:intergenic | 40.0% | |
| ACGTCAAAACTTTGGACATC+CGG | - | chr4.2:10133124-10133143 | MS.gene58163:CDS | 40.0% | |
| AGACTGCCATCGGAATATTA+AGG | - | chr4.2:10130403-10130422 | MS.gene58163:intron | 40.0% | |
| AGAGGTCTTACAGATGATCT+TGG | - | chr4.2:10131895-10131914 | MS.gene58163:CDS | 40.0% | |
| ATATGGGGAAGGATTTAGCA+TGG | - | chr4.2:10131497-10131516 | MS.gene58163:intron | 40.0% | |
| CAGATACAGAGTGATTAGGA+GGG | + | chr4.2:10131115-10131134 | None:intergenic | 40.0% | |
| CATCTCCAGTGTTAAATCTC+CGG | - | chr4.2:10131415-10131434 | MS.gene58163:intron | 40.0% | |
| CTACTCTTGGTATAGCTGTA+TGG | - | chr4.2:10129993-10130012 | MS.gene58163:CDS | 40.0% | |
| CTCCTTCCTTAATATTCCGA+TGG | + | chr4.2:10130412-10130431 | None:intergenic | 40.0% | |
| GAACACCATAGAATCTAGTG+AGG | - | chr4.2:10131523-10131542 | MS.gene58163:intron | 40.0% | |
| GCACGCACATAAGTTTGAAA+AGG | + | chr4.2:10131754-10131773 | None:intergenic | 40.0% | |
| GTTGAAAAAGGATGCTGTTG+AGG | - | chr4.2:10132681-10132700 | MS.gene58163:intron | 40.0% | |
| TATAGTCTATCCTCTATGCG+TGG | - | chr4.2:10132369-10132388 | MS.gene58163:intron | 40.0% | |
| TCTTAAGGTGGTGTCTAACA+TGG | - | chr4.2:10130988-10131007 | MS.gene58163:intron | 40.0% | |
| TGAAGCCTCACTAGATTCTA+TGG | + | chr4.2:10131531-10131550 | None:intergenic | 40.0% | |
| TGCCATCGGAATATTAAGGA+AGG | - | chr4.2:10130407-10130426 | MS.gene58163:intron | 40.0% | |
| TGGTGTCTAACATGGACAAT+CGG | - | chr4.2:10130996-10131015 | MS.gene58163:intron | 40.0% | |
| TTTGCCTCCTAAAAAAAGGG+TGG | + | chr4.2:10132741-10132760 | None:intergenic | 40.0% | |
| ! | CAAAGTGCTTTCTCTTAAGG+TGG | - | chr4.2:10130976-10130995 | MS.gene58163:intron | 40.0% |
| ! | GAAAGGAATGGACCTTCTTT+TGG | - | chr4.2:10131993-10132012 | MS.gene58163:intron | 40.0% |
| ! | GTCCCTATGGCTTTTGAATT+TGG | - | chr4.2:10132925-10132944 | MS.gene58163:intron | 40.0% |
| ! | GTGGTCAATTGTTCCTTTTG+TGG | - | chr4.2:10132393-10132412 | MS.gene58163:intron | 40.0% |
| ! | TCTAAGATGGCACCATCAAA+GGG | + | chr4.2:10132584-10132603 | None:intergenic | 40.0% |
| ! | TGTGCCCAATTTTCTACTCT+TGG | - | chr4.2:10129980-10129999 | MS.gene58163:CDS | 40.0% |
| ! | TTTCCTTGTCTGCCATTTCA+GGG | - | chr4.2:10133071-10133090 | MS.gene58163:intron | 40.0% |
| ! | TTTGTGTCTGAGACAGTGAT+AGG | - | chr4.2:10130169-10130188 | MS.gene58163:intron | 40.0% |
| !! | CAGTATTTTTGACGAAGGTG+TGG | + | chr4.2:10131157-10131176 | None:intergenic | 40.0% |
| !! | GGAGAAAACTATGGTGTTGT+GGG | + | chr4.2:10131088-10131107 | None:intergenic | 40.0% |
| !! | GGTACATTTCTTTTCAGGAG+AGG | - | chr4.2:10131877-10131896 | MS.gene58163:CDS | 40.0% |
| !! | GTATTTTTGACGAAGGTGTG+GGG | + | chr4.2:10131155-10131174 | None:intergenic | 40.0% |
| !! | TATTTTTGACGAAGGTGTGG+GGG | + | chr4.2:10131154-10131173 | None:intergenic | 40.0% |
| !! | TGCTGTTTCTCAATATGCGA+AGG | - | chr4.2:10130461-10130480 | MS.gene58163:intron | 40.0% |
| !! | TTTTCCTTGTCTGCCATTTC+AGG | - | chr4.2:10133070-10133089 | MS.gene58163:intron | 40.0% |
| AAAGGATGCTGTTGAGGCAA+TGG | - | chr4.2:10132687-10132706 | MS.gene58163:intron | 45.0% | |
| ACAGAGTGATTAGGAGGGAA+GGG | + | chr4.2:10131110-10131129 | None:intergenic | 45.0% | |
| ACATGGACAATCGGTCTTTG+TGG | - | chr4.2:10131005-10131024 | MS.gene58163:intron | 45.0% | |
| ACTTTGCTAAAGGGTCCGAA+GGG | - | chr4.2:10130060-10130079 | MS.gene58163:intron | 45.0% | |
| ATGCAGACATCTCTTGCAAC+AGG | - | chr4.2:10131815-10131834 | MS.gene58163:intron | 45.0% | |
| CCAATTTGGATTTGGATGCG+AGG | + | chr4.2:10129488-10129507 | None:intergenic | 45.0% | |
| CCATTTCAGGGAGGAATTCA+AGG | - | chr4.2:10133083-10133102 | MS.gene58163:intron | 45.0% | |
| CCTAAAAAAAGGGTGGTGTG+AGG | + | chr4.2:10132734-10132753 | None:intergenic | 45.0% | |
| CCTCGCATCCAAATCCAAAT+TGG | - | chr4.2:10129485-10129504 | MS.gene58163:CDS | 45.0% | |
| CCTTGAATTCCTCCCTGAAA+TGG | + | chr4.2:10133086-10133105 | None:intergenic | 45.0% | |
| CTCTTGGTATAGCTGTATGG+TGG | - | chr4.2:10129996-10130015 | MS.gene58163:CDS | 45.0% | |
| GCATATTGAGAAACAGCAGC+TGG | + | chr4.2:10130459-10130478 | None:intergenic | 45.0% | |
| GGGACAGATACAGAGTGATT+AGG | + | chr4.2:10131119-10131138 | None:intergenic | 45.0% | |
| GTGGTCAAATGCTTCTGCAA+CGG | - | chr4.2:10130015-10130034 | MS.gene58163:intron | 45.0% | |
| TAAAATAGCCAAAGCGCAGC+TGG | - | chr4.2:10132654-10132673 | MS.gene58163:intron | 45.0% | |
| TACAGAGTGATTAGGAGGGA+AGG | + | chr4.2:10131111-10131130 | None:intergenic | 45.0% | |
| TACAGATGATCTTGGAGCAG+AGG | - | chr4.2:10131903-10131922 | MS.gene58163:CDS | 45.0% | |
| TACATTCATAACCCCAACGC+CGG | - | chr4.2:10131380-10131399 | MS.gene58163:intron | 45.0% | |
| TGAGACAGTGATAGGCATGT+TGG | - | chr4.2:10130177-10130196 | MS.gene58163:intron | 45.0% | |
| TGGTCAAATGCTTCTGCAAC+GGG | - | chr4.2:10130016-10130035 | MS.gene58163:intron | 45.0% | |
| TGGTCCTCAAGTTCTGTTGT+TGG | + | chr4.2:10131449-10131468 | None:intergenic | 45.0% | |
| TTTAACACTGGAGATGCTCC+AGG | + | chr4.2:10131411-10131430 | None:intergenic | 45.0% | |
| ! | CTTGCAACAGGTGTTACATC+AGG | - | chr4.2:10131827-10131846 | MS.gene58163:intron | 45.0% |
| ! | GGGAGAAAACTATGGTGTTG+TGG | + | chr4.2:10131089-10131108 | None:intergenic | 45.0% |
| ! | GTCTAAGATGGCACCATCAA+AGG | + | chr4.2:10132585-10132604 | None:intergenic | 45.0% |
| ! | TTTGTGGCTGCTGCTTGTTT+GGG | - | chr4.2:10132341-10132360 | MS.gene58163:intron | 45.0% |
| !! | TGATGGTGCCATCTTAGACT+TGG | - | chr4.2:10132586-10132605 | MS.gene58163:CDS | 45.0% |
| !! | TTTTGTGGCTGCTGCTTGTT+TGG | - | chr4.2:10132340-10132359 | MS.gene58163:intron | 45.0% |
| !!! | CACACCACCCTTTTTTTAGG+AGG | - | chr4.2:10132734-10132753 | MS.gene58163:intron | 45.0% |
| !!! | CCTCACACCACCCTTTTTTT+AGG | - | chr4.2:10132731-10132750 | MS.gene58163:intron | 45.0% |
| !!! | CTGATTGTTTTGACTTGGGC+AGG | + | chr4.2:10131269-10131288 | None:intergenic | 45.0% |
| AGCAGGAGAATCAGGGAGAA+CGG | + | chr4.2:10132810-10132829 | None:intergenic | 50.0% | |
| ATTGACCACTCCACGCATAG+AGG | + | chr4.2:10132382-10132401 | None:intergenic | 50.0% | |
| CACTTTGCTAAAGGGTCCGA+AGG | - | chr4.2:10130059-10130078 | MS.gene58163:intron | 50.0% | |
| CAGAGTGATTAGGAGGGAAG+GGG | + | chr4.2:10131109-10131128 | None:intergenic | 50.0% | |
| CAGTGTTAAATCTCCGGCAC+TGG | - | chr4.2:10131421-10131440 | MS.gene58163:intron | 50.0% | |
| CCTTTAGCAAAGTGGCGAAC+CGG | + | chr4.2:10130053-10130072 | None:intergenic | 50.0% | |
| CGGTGAGTTCCCCTTTACTT+TGG | - | chr4.2:10130109-10130128 | MS.gene58163:intron | 50.0% | |
| CTTCGGACCCTTTAGCAAAG+TGG | + | chr4.2:10130061-10130080 | None:intergenic | 50.0% | |
| GAACTCACCGTCTCCCTTAA+GGG | + | chr4.2:10130099-10130118 | None:intergenic | 50.0% | |
| GAAGATCACCATAGCTCCAG+AGG | - | chr4.2:10130431-10130450 | MS.gene58163:intron | 50.0% | |
| GAGGGAAGGGGAGAAAACTA+TGG | + | chr4.2:10131097-10131116 | None:intergenic | 50.0% | |
| GCAGCTGGAGGAGTTGAAAA+AGG | - | chr4.2:10132669-10132688 | MS.gene58163:intron | 50.0% | |
| GGAATTCAAGGATGAGCCTG+CGG | - | chr4.2:10133095-10133114 | MS.gene58163:intron | 50.0% | |
| GGCGGTTGACGTCAAAACTT+TGG | - | chr4.2:10133116-10133135 | MS.gene58163:intron | 50.0% | |
| GGGGAAGGATTTAGCATGGA+AGG | - | chr4.2:10131501-10131520 | MS.gene58163:intron | 50.0% | |
| GTCAGTGGCTCAAGATGTCA+AGG | - | chr4.2:10130666-10130685 | MS.gene58163:CDS | 50.0% | |
| TCCAGCTGCTCTTCGTACTT+TGG | + | chr4.2:10132631-10132650 | None:intergenic | 50.0% | |
| TCCCTTAAGGGCAGGAAGTT+CGG | + | chr4.2:10130087-10130106 | None:intergenic | 50.0% | |
| TCCGAACTTCCTGCCCTTAA+GGG | - | chr4.2:10130083-10130102 | MS.gene58163:intron | 50.0% | |
| TCTATCCTCTATGCGTGGAG+TGG | - | chr4.2:10132374-10132393 | MS.gene58163:intron | 50.0% | |
| ! | CAGTGCCGGAGATTTAACAC+TGG | + | chr4.2:10131423-10131442 | None:intergenic | 50.0% |
| ! | CGGTTCGCCACTTTGCTAAA+GGG | - | chr4.2:10130051-10130070 | MS.gene58163:intron | 50.0% |
| ! | TGACTTGGGCAGGAGAAAGT+GGG | + | chr4.2:10131259-10131278 | None:intergenic | 50.0% |
| !! | CAGGGCAAACTTGTTGTCAG+TGG | - | chr4.2:10130651-10130670 | MS.gene58163:CDS | 50.0% |
| !! | TTGACTTGGGCAGGAGAAAG+TGG | + | chr4.2:10131260-10131279 | None:intergenic | 50.0% |
| AACACTGGAGATGCTCCAGG+TGG | + | chr4.2:10131408-10131427 | None:intergenic | 55.0% | |
| AATAGCCAAAGCGCAGCTGG+AGG | - | chr4.2:10132657-10132676 | MS.gene58163:intron | 55.0% | |
| ATTCAAGGATGAGCCTGCGG+CGG | - | chr4.2:10133098-10133117 | MS.gene58163:intron | 55.0% | |
| CCTCCCTGAAATGGCAGACA+AGG | + | chr4.2:10133077-10133096 | None:intergenic | 55.0% | |
| CTTCCTGCCCTTAAGGGAGA+CGG | - | chr4.2:10130089-10130108 | MS.gene58163:intron | 55.0% | |
| GAAACAGCAGCTGGATCCTC+TGG | + | chr4.2:10130450-10130469 | None:intergenic | 55.0% | |
| GCCAAAGTACGAAGAGCAGC+TGG | - | chr4.2:10132627-10132646 | MS.gene58163:intron | 55.0% | |
| GGAACTCACCGTCTCCCTTA+AGG | + | chr4.2:10130100-10130119 | None:intergenic | 55.0% | |
| GGCGCCAACAACAGAACTTG+AGG | - | chr4.2:10131442-10131461 | MS.gene58163:intron | 55.0% | |
| GTCCGAACTTCCTGCCCTTA+AGG | - | chr4.2:10130082-10130101 | MS.gene58163:intron | 55.0% | |
| ! | CCGGTTCGCCACTTTGCTAA+AGG | - | chr4.2:10130050-10130069 | MS.gene58163:intron | 55.0% |
| ! | CCTTGTCTGCCATTTCAGGG+AGG | - | chr4.2:10133074-10133093 | MS.gene58163:intron | 55.0% |
| ! | TGTGGGGGTGGTTCTATCGT+GGG | + | chr4.2:10131139-10131158 | None:intergenic | 55.0% |
| !! | AGCTGGATCCTCTGGAGCTA+TGG | + | chr4.2:10130442-10130461 | None:intergenic | 55.0% |
| !! | GCAACGGGAGTTTGCTGTTC+CGG | - | chr4.2:10130031-10130050 | MS.gene58163:intron | 55.0% |
| !! | TTTTGACGAAGGTGTGGGGG+TGG | + | chr4.2:10131151-10131170 | None:intergenic | 55.0% |
| CAACTCCTCCAGCTGCGCTT+TGG | + | chr4.2:10132665-10132684 | None:intergenic | 60.0% | |
| GGAGATGCTCCAGGTGGAAC+CGG | + | chr4.2:10131402-10131421 | None:intergenic | 60.0% | |
| GGCAGGAAGTTCGGACCCTT+CGG | + | chr4.2:10130078-10130097 | None:intergenic | 60.0% | |
| GGGCAGGAGAAAGTGGGTGT+GGG | + | chr4.2:10131253-10131272 | None:intergenic | 60.0% | |
| TCACCGTCTCCCTTAAGGGC+AGG | + | chr4.2:10130095-10130114 | None:intergenic | 60.0% | |
| TCTGTTGTTGGCGCCAGTGC+CGG | + | chr4.2:10131437-10131456 | None:intergenic | 60.0% | |
| TGGGCAGGAGAAAGTGGGTG+TGG | + | chr4.2:10131254-10131273 | None:intergenic | 60.0% | |
| ! | GTGTGGGGGTGGTTCTATCG+TGG | + | chr4.2:10131140-10131159 | None:intergenic | 60.0% |
| !! | GTTTTGACGTCAACCGCCGC+AGG | + | chr4.2:10133114-10133133 | None:intergenic | 60.0% |
| CTCCAGGTGGAACCGGCGTT+GGG | + | chr4.2:10131395-10131414 | None:intergenic | 65.0% | |
| TCCAGGTGGAACCGGCGTTG+GGG | + | chr4.2:10131394-10131413 | None:intergenic | 65.0% | |
| GCTCCAGGTGGAACCGGCGT+TGG | + | chr4.2:10131396-10131415 | None:intergenic | 70.0% | |
| !! | ACCCCAACGCCGGTTCCACC+TGG | - | chr4.2:10131390-10131409 | MS.gene58163:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.2 | gene | 10129468 | 10133158 | 10129468 | ID=MS.gene58163 |
| chr4.2 | mRNA | 10129468 | 10133158 | 10129468 | ID=MS.gene58163.t1;Parent=MS.gene58163 |
| chr4.2 | exon | 10133120 | 10133158 | 10133120 | ID=MS.gene58163.t1.exon1;Parent=MS.gene58163.t1 |
| chr4.2 | CDS | 10133120 | 10133158 | 10133120 | ID=cds.MS.gene58163.t1;Parent=MS.gene58163.t1 |
| chr4.2 | exon | 10132516 | 10132618 | 10132516 | ID=MS.gene58163.t1.exon2;Parent=MS.gene58163.t1 |
| chr4.2 | CDS | 10132516 | 10132618 | 10132516 | ID=cds.MS.gene58163.t1;Parent=MS.gene58163.t1 |
| chr4.2 | exon | 10132121 | 10132265 | 10132121 | ID=MS.gene58163.t1.exon3;Parent=MS.gene58163.t1 |
| chr4.2 | CDS | 10132121 | 10132265 | 10132121 | ID=cds.MS.gene58163.t1;Parent=MS.gene58163.t1 |
| chr4.2 | exon | 10131862 | 10131972 | 10131862 | ID=MS.gene58163.t1.exon4;Parent=MS.gene58163.t1 |
| chr4.2 | CDS | 10131862 | 10131972 | 10131862 | ID=cds.MS.gene58163.t1;Parent=MS.gene58163.t1 |
| chr4.2 | exon | 10130586 | 10130732 | 10130586 | ID=MS.gene58163.t1.exon5;Parent=MS.gene58163.t1 |
| chr4.2 | CDS | 10130586 | 10130732 | 10130586 | ID=cds.MS.gene58163.t1;Parent=MS.gene58163.t1 |
| chr4.2 | exon | 10129901 | 10130023 | 10129901 | ID=MS.gene58163.t1.exon6;Parent=MS.gene58163.t1 |
| chr4.2 | CDS | 10129901 | 10130023 | 10129901 | ID=cds.MS.gene58163.t1;Parent=MS.gene58163.t1 |
| chr4.2 | exon | 10129468 | 10129534 | 10129468 | ID=MS.gene58163.t1.exon7;Parent=MS.gene58163.t1 |
| chr4.2 | CDS | 10129468 | 10129534 | 10129468 | ID=cds.MS.gene58163.t1;Parent=MS.gene58163.t1 |
| Gene Sequence |
| Protein sequence |
