Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene58206.t1 | XP_024636611.1 | 64.9 | 490 | 70 | 7 | 1 | 408 | 8 | 477 | 4.30E-150 | 541.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene58206.t1 | Q9C9C0 | 46.7 | 345 | 100 | 7 | 131 | 397 | 276 | 614 | 1.8e-64 | 248.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene58206.t1 | G7JFI3 | 60.5 | 483 | 77 | 6 | 1 | 408 | 20 | 463 | 8.3e-135 | 490.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene060135 | MS.gene58206 | 0.832796 | 7.70E-56 | -1.69E-46 |
| MS.gene060332 | MS.gene58206 | 0.900975 | 4.28E-78 | -1.69E-46 |
| MS.gene060334 | MS.gene58206 | 0.981733 | 2.59E-153 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene58206.t1 | MTR_4g130360 | 71.302 | 338 | 67 | 4 | 73 | 408 | 154 | 463 | 3.34e-164 | 470 |
| MS.gene58206.t1 | MTR_4g130360 | 72.897 | 107 | 9 | 2 | 1 | 107 | 20 | 106 | 1.09e-29 | 120 |
| MS.gene58206.t1 | MTR_4g112860 | 50.581 | 344 | 86 | 8 | 132 | 397 | 259 | 596 | 8.05e-91 | 288 |
| MS.gene58206.t1 | MTR_4g112860 | 41.322 | 121 | 62 | 3 | 6 | 118 | 3 | 122 | 5.98e-14 | 74.3 |
| MS.gene58206.t1 | MTR_2g058970 | 48.127 | 347 | 96 | 8 | 129 | 397 | 268 | 608 | 5.33e-82 | 265 |
| MS.gene58206.t1 | MTR_5g025810 | 43.142 | 401 | 133 | 13 | 67 | 396 | 35 | 411 | 1.91e-78 | 253 |
| MS.gene58206.t1 | MTR_4g112820 | 46.855 | 318 | 92 | 10 | 132 | 389 | 185 | 485 | 3.28e-72 | 235 |
| MS.gene58206.t1 | MTR_4g112860 | 57.619 | 210 | 69 | 4 | 132 | 325 | 259 | 464 | 5.35e-67 | 221 |
| MS.gene58206.t1 | MTR_4g112860 | 41.322 | 121 | 62 | 3 | 6 | 118 | 3 | 122 | 3.91e-14 | 74.3 |
| MS.gene58206.t1 | MTR_4g112860 | 53.279 | 244 | 92 | 5 | 132 | 357 | 259 | 498 | 5.73e-67 | 224 |
| MS.gene58206.t1 | MTR_4g112860 | 41.322 | 121 | 62 | 3 | 6 | 118 | 3 | 122 | 4.02e-14 | 74.7 |
| MS.gene58206.t1 | MTR_5g082990 | 51.136 | 264 | 77 | 9 | 131 | 361 | 65 | 309 | 9.00e-65 | 213 |
| MS.gene58206.t1 | MTR_8g022470 | 46.441 | 295 | 121 | 9 | 132 | 393 | 27 | 317 | 9.12e-65 | 211 |
| MS.gene58206.t1 | MTR_4g114810 | 41.772 | 316 | 60 | 9 | 133 | 397 | 179 | 421 | 2.09e-49 | 175 |
| MS.gene58206.t1 | MTR_4g134260 | 44.444 | 243 | 116 | 5 | 173 | 397 | 135 | 376 | 2.68e-49 | 173 |
| MS.gene58206.t1 | MTR_5g083100 | 43.852 | 244 | 99 | 8 | 151 | 391 | 37 | 245 | 7.67e-43 | 156 |
| MS.gene58206.t1 | MTR_4g123500 | 34.853 | 307 | 143 | 8 | 133 | 390 | 142 | 440 | 2.21e-39 | 147 |
| MS.gene58206.t1 | MTR_8g022500 | 47.030 | 202 | 48 | 4 | 246 | 390 | 226 | 425 | 4.23e-39 | 147 |
| MS.gene58206.t1 | MTR_4g133130 | 46.392 | 194 | 54 | 5 | 229 | 390 | 50 | 225 | 5.31e-35 | 136 |
| MS.gene58206.t1 | MTR_4g112860 | 50.345 | 145 | 52 | 4 | 132 | 260 | 259 | 399 | 4.68e-33 | 129 |
| MS.gene58206.t1 | MTR_4g112860 | 41.322 | 121 | 62 | 3 | 6 | 118 | 3 | 122 | 3.15e-14 | 74.3 |
| MS.gene58206.t1 | MTR_4g130550 | 44.304 | 79 | 44 | 0 | 248 | 326 | 68 | 146 | 9.99e-14 | 70.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene58206.t1 | AT1G73990 | 41.983 | 343 | 119 | 7 | 131 | 397 | 276 | 614 | 5.42e-64 | 218 |
| MS.gene58206.t1 | AT1G73990 | 50.204 | 245 | 100 | 5 | 131 | 357 | 276 | 516 | 1.37e-61 | 210 |
Find 112 sgRNAs with CRISPR-Local
Find 149 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGGAAAAGGATCTATTATT+TGG | 0.128131 | 8.2:-4592062 | None:intergenic |
| CGAGACAACAACTGCATTAA+TGG | 0.184426 | 8.2:+4591476 | MS.gene58206:CDS |
| TGGATAATATTTACTCAAAT+TGG | 0.197209 | 8.2:+4591496 | MS.gene58206:CDS |
| AATTTGGAAGGTAAGATTTC+TGG | 0.242205 | 8.2:+4590925 | MS.gene58206:CDS |
| TGGAACCTCTTCCATTGATT+TGG | 0.252339 | 8.2:-4592081 | None:intergenic |
| AGGAGGAATTTAATCTTCTT+TGG | 0.260660 | 8.2:+4592279 | MS.gene58206:CDS |
| CTCGGTTTGGTTGATGCTAT+TGG | 0.265550 | 8.2:+4592146 | MS.gene58206:CDS |
| TCATAACGGATTTGCTATAT+AGG | 0.286656 | 8.2:+4591628 | MS.gene58206:CDS |
| CAGTTCAGGAGGTAAATTTC+GGG | 0.292898 | 8.2:+4591884 | MS.gene58206:CDS |
| CCAAGCCTTTCCTTCAAGTT+GGG | 0.324316 | 8.2:-4591663 | None:intergenic |
| TTAGTGCATCCTAATCTTCT+TGG | 0.333889 | 8.2:+4592314 | MS.gene58206:CDS |
| ACAGTTCAGGAGGTAAATTT+CGG | 0.345303 | 8.2:+4591883 | MS.gene58206:CDS |
| GCAGAAAATCTTACCTTAGT+TGG | 0.347938 | 8.2:+4592029 | MS.gene58206:CDS |
| ATAGCCATCATTCGAGTCTC+AGG | 0.356408 | 8.2:+4591774 | MS.gene58206:CDS |
| CACAGGGGAAGGGGAAGGTT+TGG | 0.359665 | 8.2:+4592102 | MS.gene58206:CDS |
| CATAACGGATTTGCTATATA+GGG | 0.361873 | 8.2:+4591629 | MS.gene58206:CDS |
| CGCTCGTGCGGTAGAATTTG+AGG | 0.386162 | 8.2:-4590831 | None:intergenic |
| AAGGCCAATATACCTCAAAA+TGG | 0.388556 | 8.2:+4592203 | MS.gene58206:CDS |
| AGTTTATTGAGAATATATAT+AGG | 0.390012 | 8.2:+4591817 | MS.gene58206:CDS |
| CCCAAGCCTTTCCTTCAAGT+TGG | 0.390394 | 8.2:-4591664 | None:intergenic |
| GTTTATTGAGAATATATATA+GGG | 0.396139 | 8.2:+4591818 | MS.gene58206:CDS |
| CTCTGGCTTGAAGAAGTATC+TGG | 0.400164 | 8.2:+4591023 | MS.gene58206:CDS |
| CTCTTCCATTGATTTGGAAA+AGG | 0.400283 | 8.2:-4592075 | None:intergenic |
| ATTGTCCGAATTGACAGTTC+AGG | 0.411636 | 8.2:+4591870 | MS.gene58206:CDS |
| TTGGTTAACTTTGTAACTAA+AGG | 0.412796 | 8.2:+4591570 | MS.gene58206:CDS |
| CCAACTTGAAGGAAAGGCTT+GGG | 0.422842 | 8.2:+4591664 | MS.gene58206:CDS |
| TGGATAATCAACATCCTTGC+CGG | 0.434812 | 8.2:-4590974 | None:intergenic |
| GCTCGTGCGGTAGAATTTGA+GGG | 0.437753 | 8.2:-4590830 | None:intergenic |
| CTCCCAGGGTAAAGTTGGAC+AGG | 0.443050 | 8.2:-4592255 | None:intergenic |
| TACCTCCTGAACTGTCAATT+CGG | 0.443292 | 8.2:-4591875 | None:intergenic |
| GTTCTTCAAATCAATTTGTC+CGG | 0.445006 | 8.2:+4591099 | MS.gene58206:CDS |
| TCCTCCTCCCAGGGTAAAGT+TGG | 0.446367 | 8.2:-4592260 | None:intergenic |
| GAATTTGAGGGGTTTATGAA+TGG | 0.450237 | 8.2:-4590818 | None:intergenic |
| GGAAGAGGTTCCACAGGGGA+AGG | 0.463372 | 8.2:+4592091 | MS.gene58206:CDS |
| AAGAGGTTCCACAGGGGAAG+GGG | 0.467563 | 8.2:+4592093 | MS.gene58206:CDS |
| CAGATCATCAACAGAATTCA+AGG | 0.474665 | 8.2:+4591842 | MS.gene58206:CDS |
| ATTAAATTCCTCCTCCTCCC+AGG | 0.476401 | 8.2:-4592270 | None:intergenic |
| AGGGGTTTATGAATGGTAGC+AGG | 0.476548 | 8.2:-4590811 | None:intergenic |
| AAGAGAAAATGTCGAAAACT+TGG | 0.476552 | 8.2:+4591551 | MS.gene58206:CDS |
| AAGGATGTTGATTATCCAAC+CGG | 0.477750 | 8.2:+4590979 | MS.gene58206:CDS |
| AAGTTGTGACCAAGAAGATT+AGG | 0.481987 | 8.2:-4592323 | None:intergenic |
| AACTTTACCCTGGGAGGAGG+AGG | 0.483757 | 8.2:+4592262 | MS.gene58206:CDS |
| GCAGGATACTACTTAGCAAC+GGG | 0.485513 | 8.2:+4591990 | MS.gene58206:CDS |
| CAAAGAAGAGGGTTTCATAA+CGG | 0.489037 | 8.2:+4591614 | MS.gene58206:CDS |
| TACTACTTAGCAACGGGAGC+AGG | 0.490304 | 8.2:+4591996 | MS.gene58206:CDS |
| GGACGCAACATCTCTCGGTT+TGG | 0.491111 | 8.2:+4592133 | MS.gene58206:CDS |
| TTCGGGCATCTAATTATATG+TGG | 0.492637 | 8.2:+4591901 | MS.gene58206:CDS |
| TCTGATGTGGCAACAAGTGC+AGG | 0.494828 | 8.2:+4591972 | MS.gene58206:CDS |
| AATCGACTGTTGGAATATCA+AGG | 0.496160 | 8.2:+4591736 | MS.gene58206:CDS |
| TGATATTATCCCCAACTTGA+AGG | 0.496185 | 8.2:+4591653 | MS.gene58206:CDS |
| TGTTACTGCATTATTCGTAA+AGG | 0.500089 | 8.2:+4592345 | MS.gene58206:CDS |
| TATTGCTATAGCAAAATTGA+AGG | 0.500409 | 8.2:+4592184 | MS.gene58206:CDS |
| TACCTCTGAATCGGTGTGTA+GGG | 0.501142 | 8.2:-4591136 | None:intergenic |
| CGCGTTAGTAAATCGACTGT+TGG | 0.501184 | 8.2:+4591726 | MS.gene58206:CDS |
| ATCAATGGAAGAGGTTCCAC+AGG | 0.501640 | 8.2:+4592085 | MS.gene58206:CDS |
| GAAGATTAGGATGCACTAAC+GGG | 0.503183 | 8.2:-4592310 | None:intergenic |
| TAGAGATAATACCTCTGAAT+CGG | 0.505324 | 8.2:-4591145 | None:intergenic |
| CCCAACTTGAAGGAAAGGCT+TGG | 0.506916 | 8.2:+4591663 | MS.gene58206:CDS |
| TTTGATTTCATTCCACACTC+TGG | 0.514952 | 8.2:+4591006 | MS.gene58206:CDS |
| GAAGAGGTTCCACAGGGGAA+GGG | 0.517831 | 8.2:+4592092 | MS.gene58206:CDS |
| TTATCCCCAACTTGAAGGAA+AGG | 0.520815 | 8.2:+4591658 | MS.gene58206:CDS |
| TGGAATGAAATCAAAATCTC+CGG | 0.524479 | 8.2:-4590998 | None:intergenic |
| CAAGCCTTTCCTTCAAGTTG+GGG | 0.529315 | 8.2:-4591662 | None:intergenic |
| AACATCCTTGCCGGAAGAAG+AGG | 0.530642 | 8.2:-4590965 | None:intergenic |
| GGTTCCACAGGGGAAGGGGA+AGG | 0.533194 | 8.2:+4592097 | MS.gene58206:CDS |
| ATCAGATATTGAAGCAATGA+CGG | 0.536024 | 8.2:-4591955 | None:intergenic |
| GGTTTGGTTGATGCTATTGG+TGG | 0.540573 | 8.2:+4592149 | MS.gene58206:CDS |
| TATTCTTTGAAAGAAACAAA+AGG | 0.543012 | 8.2:-4591699 | None:intergenic |
| TGGACTAAAAGAACCAACTA+AGG | 0.544447 | 8.2:-4592042 | None:intergenic |
| AGAAGATTAGGATGCACTAA+CGG | 0.547063 | 8.2:-4592311 | None:intergenic |
| TCAGATATTGAAGCAATGAC+GGG | 0.551209 | 8.2:-4591954 | None:intergenic |
| ATACCTCTGAATCGGTGTGT+AGG | 0.552557 | 8.2:-4591137 | None:intergenic |
| CACCCTGTCCAACTTTACCC+TGG | 0.555639 | 8.2:+4592252 | MS.gene58206:CDS |
| GTTTGGTTGATGCTATTGGT+GGG | 0.556402 | 8.2:+4592150 | MS.gene58206:CDS |
| GGTAAGGACGCAACATCTCT+CGG | 0.557645 | 8.2:+4592128 | MS.gene58206:CDS |
| CACCCTACACACCGATTCAG+AGG | 0.558538 | 8.2:+4591134 | MS.gene58206:CDS |
| TGAATCGGTGTGTAGGGTGT+CGG | 0.562552 | 8.2:-4591130 | None:intergenic |
| TCCAACTTTACCCTGGGAGG+AGG | 0.565785 | 8.2:+4592259 | MS.gene58206:CDS |
| GATGTAGTATCTTCTTCCAC+CGG | 0.568021 | 8.2:+4591522 | MS.gene58206:CDS |
| AGTAGAAGAACTCAAAGAAG+AGG | 0.568425 | 8.2:+4591602 | MS.gene58206:CDS |
| AGACCCTGAGACTCGAATGA+TGG | 0.571972 | 8.2:-4591778 | None:intergenic |
| CTCGTGCGGTAGAATTTGAG+GGG | 0.580670 | 8.2:-4590829 | None:intergenic |
| CTGCTAGCACTCCCCTCAGA+GGG | 0.583729 | 8.2:+4591060 | MS.gene58206:CDS |
| ACCCTGTCCAACTTTACCCT+GGG | 0.586996 | 8.2:+4592253 | MS.gene58206:CDS |
| AGCAGGTGATATACAGCGAT+CGG | 0.592109 | 8.2:-4590794 | None:intergenic |
| GTAGAAGAACTCAAAGAAGA+GGG | 0.593743 | 8.2:+4591603 | MS.gene58206:CDS |
| TAGGGTGTCGGATATTATGC+CGG | 0.594782 | 8.2:-4591118 | None:intergenic |
| ATGAAATCAAAATCTCCGGT+TGG | 0.594805 | 8.2:-4590994 | None:intergenic |
| TACTTCTTCAAGCCAGAGTG+TGG | 0.594882 | 8.2:-4591018 | None:intergenic |
| TTAATGCAGTTGTTGTCTCG+TGG | 0.598388 | 8.2:-4591473 | None:intergenic |
| ATCGACTGTTGGAATATCAA+GGG | 0.598413 | 8.2:+4591737 | MS.gene58206:CDS |
| CATTGCTTCAATATCTGATG+TGG | 0.601190 | 8.2:+4591959 | MS.gene58206:CDS |
| TTAAATTCCTCCTCCTCCCA+GGG | 0.602774 | 8.2:-4592269 | None:intergenic |
| GGGGAAGGTTTGGACTGGTA+AGG | 0.604771 | 8.2:+4592112 | MS.gene58206:CDS |
| TAGCCATCATTCGAGTCTCA+GGG | 0.606571 | 8.2:+4591775 | MS.gene58206:CDS |
| CGATCAATAATAGAAGATGA+TGG | 0.608918 | 8.2:-4590868 | None:intergenic |
| TGCAGGATACTACTTAGCAA+CGG | 0.610387 | 8.2:+4591989 | MS.gene58206:CDS |
| CGGAAGAAGAGGAAAATAAG+TGG | 0.613550 | 8.2:-4590954 | None:intergenic |
| ATAATAGAAGATGATGGTGG+CGG | 0.619265 | 8.2:-4590862 | None:intergenic |
| GTCCGAATTGACAGTTCAGG+AGG | 0.622572 | 8.2:+4591873 | MS.gene58206:CDS |
| AGGGTCTATCAGTAGTGCAA+CGG | 0.633641 | 8.2:+4591794 | MS.gene58206:CDS |
| CAACTTGAAGGAAAGGCTTG+GGG | 0.634279 | 8.2:+4591665 | MS.gene58206:CDS |
| GGGAAGGGGAAGGTTTGGAC+TGG | 0.637451 | 8.2:+4592107 | MS.gene58206:CDS |
| CAAACCTTCCCCTTCCCCTG+TGG | 0.650489 | 8.2:-4592101 | None:intergenic |
| TCCCAGGGTAAAGTTGGACA+GGG | 0.651519 | 8.2:-4592254 | None:intergenic |
| CAATATACCTCAAAATGGTG+AGG | 0.660377 | 8.2:+4592208 | MS.gene58206:CDS |
| TCAATGGAAGAGGTTCCACA+GGG | 0.668896 | 8.2:+4592086 | MS.gene58206:CDS |
| TCTGCTAGCACTCCCCTCAG+AGG | 0.672433 | 8.2:+4591059 | MS.gene58206:CDS |
| CTGTCCAACTTTACCCTGGG+AGG | 0.673818 | 8.2:+4592256 | MS.gene58206:CDS |
| GCGGTGATATTGCGCTCGTG+CGG | 0.694021 | 8.2:-4590843 | None:intergenic |
| TCAATAATAGAAGATGATGG+TGG | 0.696702 | 8.2:-4590865 | None:intergenic |
| CAATGGAAGAGGTTCCACAG+GGG | 0.794420 | 8.2:+4592087 | MS.gene58206:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AGTTTATTGAGAATATATAT+AGG | + | chr8.2:4591817-4591836 | MS.gene58206:CDS | 15.0% |
| !! | CACAAATTTAGTTATATTAA+GGG | + | chr8.2:4591426-4591445 | MS.gene58206:intron | 15.0% |
| !! | GTTTATTGAGAATATATATA+GGG | + | chr8.2:4591818-4591837 | MS.gene58206:CDS | 15.0% |
| !! | TCACAAATTTAGTTATATTA+AGG | + | chr8.2:4591425-4591444 | MS.gene58206:intron | 15.0% |
| !!! | AAATTGAATTTTTTGTGAAT+CGG | - | chr8.2:4590910-4590929 | None:intergenic | 15.0% |
| !! | ATCTTAAATTTCAGAAAATC+AGG | + | chr8.2:4591285-4591304 | MS.gene58206:intron | 20.0% |
| !! | GATTCACAAAAAATTCAATT+TGG | + | chr8.2:4590909-4590928 | MS.gene58206:CDS | 20.0% |
| !! | TGGATAATATTTACTCAAAT+TGG | + | chr8.2:4591496-4591515 | MS.gene58206:CDS | 20.0% |
| !!! | TATTCTTTGAAAGAAACAAA+AGG | - | chr8.2:4591702-4591721 | None:intergenic | 20.0% |
| ! | AACAAATTATCGCAAATTTG+AGG | - | chr8.2:4591171-4591190 | None:intergenic | 25.0% |
| ! | AATATCCAAAATTTGAACAC+TGG | + | chr8.2:4591231-4591250 | MS.gene58206:intron | 25.0% |
| ! | AGATATACAACATAAATACG+AGG | - | chr8.2:4591210-4591229 | None:intergenic | 25.0% |
| ! | ATAACTAAATTTGTGAACAG+TGG | - | chr8.2:4591421-4591440 | None:intergenic | 25.0% |
| ! | CACAAAAAATTCAATTTGGA+AGG | + | chr8.2:4590913-4590932 | MS.gene58206:CDS | 25.0% |
| ! | TAACTAAATTTGTGAACAGT+GGG | - | chr8.2:4591420-4591439 | None:intergenic | 25.0% |
| ! | TATTGCTATAGCAAAATTGA+AGG | + | chr8.2:4592184-4592203 | MS.gene58206:CDS | 25.0% |
| ! | TTGGAAAAGGATCTATTATT+TGG | - | chr8.2:4592065-4592084 | None:intergenic | 25.0% |
| ! | TTGGTTAACTTTGTAACTAA+AGG | + | chr8.2:4591570-4591589 | MS.gene58206:CDS | 25.0% |
| AAGAGAAAATGTCGAAAACT+TGG | + | chr8.2:4591551-4591570 | MS.gene58206:CDS | 30.0% | |
| AATTTGGAAGGTAAGATTTC+TGG | + | chr8.2:4590925-4590944 | MS.gene58206:CDS | 30.0% | |
| AGGAGGAATTTAATCTTCTT+TGG | + | chr8.2:4592279-4592298 | MS.gene58206:CDS | 30.0% | |
| ATAAATACGAGGATCATACA+TGG | - | chr8.2:4591199-4591218 | None:intergenic | 30.0% | |
| ATCAGATATTGAAGCAATGA+CGG | - | chr8.2:4591958-4591977 | None:intergenic | 30.0% | |
| CGATCAATAATAGAAGATGA+TGG | - | chr8.2:4590871-4590890 | None:intergenic | 30.0% | |
| GTAAACTAGATGAAATTCGA+AGG | + | chr8.2:4591259-4591278 | MS.gene58206:intron | 30.0% | |
| GTTCTTCAAATCAATTTGTC+CGG | + | chr8.2:4591099-4591118 | MS.gene58206:CDS | 30.0% | |
| TACAAATGAACCTCAACAAA+AGG | - | chr8.2:4591393-4591412 | None:intergenic | 30.0% | |
| TAGAGATAATACCTCTGAAT+CGG | - | chr8.2:4591148-4591167 | None:intergenic | 30.0% | |
| TGGAATGAAATCAAAATCTC+CGG | - | chr8.2:4591001-4591020 | None:intergenic | 30.0% | |
| TTTGTTGAGGTTCATTTGTA+TGG | + | chr8.2:4591393-4591412 | MS.gene58206:intron | 30.0% | |
| ! | ACTCTTTTACTCCAATTTCA+GGG | - | chr8.2:4591332-4591351 | None:intergenic | 30.0% |
| ! | GACATTTTCTCTTTTCTTTC+CGG | - | chr8.2:4591544-4591563 | None:intergenic | 30.0% |
| ! | TACTCTTTTACTCCAATTTC+AGG | - | chr8.2:4591333-4591352 | None:intergenic | 30.0% |
| ! | TAGATCCTTTTCCAAATCAA+TGG | + | chr8.2:4592070-4592089 | MS.gene58206:CDS | 30.0% |
| ! | TCAATAATAGAAGATGATGG+TGG | - | chr8.2:4590868-4590887 | None:intergenic | 30.0% |
| !! | CATAACGGATTTGCTATATA+GGG | + | chr8.2:4591629-4591648 | MS.gene58206:CDS | 30.0% |
| !! | TCATAACGGATTTGCTATAT+AGG | + | chr8.2:4591628-4591647 | MS.gene58206:CDS | 30.0% |
| AAGGCCAATATACCTCAAAA+TGG | + | chr8.2:4592203-4592222 | MS.gene58206:CDS | 35.0% | |
| AAGTTGTGACCAAGAAGATT+AGG | - | chr8.2:4592326-4592345 | None:intergenic | 35.0% | |
| AATCGACTGTTGGAATATCA+AGG | + | chr8.2:4591736-4591755 | MS.gene58206:CDS | 35.0% | |
| AATGAACCTCAACAAAAGGA+TGG | - | chr8.2:4591389-4591408 | None:intergenic | 35.0% | |
| ACAGTTCAGGAGGTAAATTT+CGG | + | chr8.2:4591883-4591902 | MS.gene58206:CDS | 35.0% | |
| AGAAGATTAGGATGCACTAA+CGG | - | chr8.2:4592314-4592333 | None:intergenic | 35.0% | |
| AGTAGAAGAACTCAAAGAAG+AGG | + | chr8.2:4591602-4591621 | MS.gene58206:CDS | 35.0% | |
| ATCGACTGTTGGAATATCAA+GGG | + | chr8.2:4591737-4591756 | MS.gene58206:CDS | 35.0% | |
| ATGAAATCAAAATCTCCGGT+TGG | - | chr8.2:4590997-4591016 | None:intergenic | 35.0% | |
| ATGAACCTCAACAAAAGGAT+GGG | - | chr8.2:4591388-4591407 | None:intergenic | 35.0% | |
| CAAAGAAGAGGGTTTCATAA+CGG | + | chr8.2:4591614-4591633 | MS.gene58206:CDS | 35.0% | |
| CAATATACCTCAAAATGGTG+AGG | + | chr8.2:4592208-4592227 | MS.gene58206:CDS | 35.0% | |
| CAGATCATCAACAGAATTCA+AGG | + | chr8.2:4591842-4591861 | MS.gene58206:CDS | 35.0% | |
| CATTGCTTCAATATCTGATG+TGG | + | chr8.2:4591959-4591978 | MS.gene58206:CDS | 35.0% | |
| GAATTTGAGGGGTTTATGAA+TGG | - | chr8.2:4590821-4590840 | None:intergenic | 35.0% | |
| GCAGAAAATCTTACCTTAGT+TGG | + | chr8.2:4592029-4592048 | MS.gene58206:CDS | 35.0% | |
| GTAGAAGAACTCAAAGAAGA+GGG | + | chr8.2:4591603-4591622 | MS.gene58206:CDS | 35.0% | |
| TCAGATATTGAAGCAATGAC+GGG | - | chr8.2:4591957-4591976 | None:intergenic | 35.0% | |
| TCCAAAATTTGAACACTGGT+TGG | + | chr8.2:4591235-4591254 | MS.gene58206:intron | 35.0% | |
| TGATATTATCCCCAACTTGA+AGG | + | chr8.2:4591653-4591672 | MS.gene58206:CDS | 35.0% | |
| TGGACTAAAAGAACCAACTA+AGG | - | chr8.2:4592045-4592064 | None:intergenic | 35.0% | |
| TTAGTGCATCCTAATCTTCT+TGG | + | chr8.2:4592314-4592333 | MS.gene58206:CDS | 35.0% | |
| TTCGGGCATCTAATTATATG+TGG | + | chr8.2:4591901-4591920 | MS.gene58206:CDS | 35.0% | |
| TTTGCTTATGTCCCTGAAAT+TGG | + | chr8.2:4591318-4591337 | MS.gene58206:intron | 35.0% | |
| ! | AAGGATGTTGATTATCCAAC+CGG | + | chr8.2:4590979-4590998 | MS.gene58206:CDS | 35.0% |
| ! | ATTTTCTCTTTTCTTTCCGG+TGG | - | chr8.2:4591541-4591560 | None:intergenic | 35.0% |
| ! | CAAAATTTGAACACTGGTTG+GGG | + | chr8.2:4591237-4591256 | MS.gene58206:intron | 35.0% |
| ! | CCAAAATTTGAACACTGGTT+GGG | + | chr8.2:4591236-4591255 | MS.gene58206:intron | 35.0% |
| ! | CTTTTCCAAATCAATGGAAG+AGG | + | chr8.2:4592076-4592095 | MS.gene58206:CDS | 35.0% |
| ! | TTTGATTTCATTCCACACTC+TGG | + | chr8.2:4591006-4591025 | MS.gene58206:CDS | 35.0% |
| !! | ATAATAGAAGATGATGGTGG+CGG | - | chr8.2:4590865-4590884 | None:intergenic | 35.0% |
| !! | CACTTATTTTCCTCTTCTTC+CGG | + | chr8.2:4590955-4590974 | MS.gene58206:CDS | 35.0% |
| !! | CTCTTCCATTGATTTGGAAA+AGG | - | chr8.2:4592078-4592097 | None:intergenic | 35.0% |
| !!! | CTCACCATTTTGAGGTATAT+TGG | - | chr8.2:4592210-4592229 | None:intergenic | 35.0% |
| ATTGTCCGAATTGACAGTTC+AGG | + | chr8.2:4591870-4591889 | MS.gene58206:CDS | 40.0% | |
| CAGTTCAGGAGGTAAATTTC+GGG | + | chr8.2:4591884-4591903 | MS.gene58206:CDS | 40.0% | |
| CGAGACAACAACTGCATTAA+TGG | + | chr8.2:4591476-4591495 | MS.gene58206:CDS | 40.0% | |
| CGGAAGAAGAGGAAAATAAG+TGG | - | chr8.2:4590957-4590976 | None:intergenic | 40.0% | |
| GAAGATTAGGATGCACTAAC+GGG | - | chr8.2:4592313-4592332 | None:intergenic | 40.0% | |
| GATGTAGTATCTTCTTCCAC+CGG | + | chr8.2:4591522-4591541 | MS.gene58206:CDS | 40.0% | |
| TACCTCCTGAACTGTCAATT+CGG | - | chr8.2:4591878-4591897 | None:intergenic | 40.0% | |
| TGCAGGATACTACTTAGCAA+CGG | + | chr8.2:4591989-4592008 | MS.gene58206:CDS | 40.0% | |
| TGGATAATCAACATCCTTGC+CGG | - | chr8.2:4590977-4590996 | None:intergenic | 40.0% | |
| TTAATGCAGTTGTTGTCTCG+TGG | - | chr8.2:4591476-4591495 | None:intergenic | 40.0% | |
| TTATCCCCAACTTGAAGGAA+AGG | + | chr8.2:4591658-4591677 | MS.gene58206:CDS | 40.0% | |
| ! | AGAGTAACCTCACCATTTTG+AGG | - | chr8.2:4592218-4592237 | None:intergenic | 40.0% |
| ! | ATATGCCCATCCTTTTGTTG+AGG | + | chr8.2:4591380-4591399 | MS.gene58206:intron | 40.0% |
| ! | CCCAACCAGTGTTCAAATTT+TGG | - | chr8.2:4591239-4591258 | None:intergenic | 40.0% |
| ! | GTTTGGTTGATGCTATTGGT+GGG | + | chr8.2:4592150-4592169 | MS.gene58206:CDS | 40.0% |
| ! | TGGAACCTCTTCCATTGATT+TGG | - | chr8.2:4592084-4592103 | None:intergenic | 40.0% |
| !!! | TGAAGCAATGACGGGTTTTT+CGG | - | chr8.2:4591949-4591968 | None:intergenic | 40.0% |
| AGCAGGTGATATACAGCGAT+CGG | - | chr8.2:4590797-4590816 | None:intergenic | 45.0% | |
| AGGGGTTTATGAATGGTAGC+AGG | - | chr8.2:4590814-4590833 | None:intergenic | 45.0% | |
| AGGGTCTATCAGTAGTGCAA+CGG | + | chr8.2:4591794-4591813 | MS.gene58206:CDS | 45.0% | |
| ATACCTCTGAATCGGTGTGT+AGG | - | chr8.2:4591140-4591159 | None:intergenic | 45.0% | |
| ATAGCCATCATTCGAGTCTC+AGG | + | chr8.2:4591774-4591793 | MS.gene58206:CDS | 45.0% | |
| ATCAATGGAAGAGGTTCCAC+AGG | + | chr8.2:4592085-4592104 | MS.gene58206:CDS | 45.0% | |
| ATTAAATTCCTCCTCCTCCC+AGG | - | chr8.2:4592273-4592292 | None:intergenic | 45.0% | |
| CAACTTGAAGGAAAGGCTTG+GGG | + | chr8.2:4591665-4591684 | MS.gene58206:CDS | 45.0% | |
| CCAACTTGAAGGAAAGGCTT+GGG | + | chr8.2:4591664-4591683 | MS.gene58206:CDS | 45.0% | |
| CGCGTTAGTAAATCGACTGT+TGG | + | chr8.2:4591726-4591745 | MS.gene58206:CDS | 45.0% | |
| GCAGGATACTACTTAGCAAC+GGG | + | chr8.2:4591990-4592009 | MS.gene58206:CDS | 45.0% | |
| TACCTCTGAATCGGTGTGTA+GGG | - | chr8.2:4591139-4591158 | None:intergenic | 45.0% | |
| TACTTCTTCAAGCCAGAGTG+TGG | - | chr8.2:4591021-4591040 | None:intergenic | 45.0% | |
| TAGCCATCATTCGAGTCTCA+GGG | + | chr8.2:4591775-4591794 | MS.gene58206:CDS | 45.0% | |
| TCAATGGAAGAGGTTCCACA+GGG | + | chr8.2:4592086-4592105 | MS.gene58206:CDS | 45.0% | |
| TTAAATTCCTCCTCCTCCCA+GGG | - | chr8.2:4592272-4592291 | None:intergenic | 45.0% | |
| ! | ATTTTCCTCTTCTTCCGGCA+AGG | + | chr8.2:4590960-4590979 | MS.gene58206:CDS | 45.0% |
| ! | CCAAGCCTTTCCTTCAAGTT+GGG | - | chr8.2:4591666-4591685 | None:intergenic | 45.0% |
| ! | CGTTTTTAACACCCTCTGAG+GGG | - | chr8.2:4591074-4591093 | None:intergenic | 45.0% |
| ! | GGTTTGGTTGATGCTATTGG+TGG | + | chr8.2:4592149-4592168 | MS.gene58206:CDS | 45.0% |
| !! | CAAGCCTTTCCTTCAAGTTG+GGG | - | chr8.2:4591665-4591684 | None:intergenic | 45.0% |
| !! | CCCTCAGAGGGTGTTAAAAA+CGG | + | chr8.2:4591072-4591091 | MS.gene58206:CDS | 45.0% |
| !! | CCGTTTTTAACACCCTCTGA+GGG | - | chr8.2:4591075-4591094 | None:intergenic | 45.0% |
| !! | CTCGGTTTGGTTGATGCTAT+TGG | + | chr8.2:4592146-4592165 | MS.gene58206:CDS | 45.0% |
| !! | CTCTGGCTTGAAGAAGTATC+TGG | + | chr8.2:4591023-4591042 | MS.gene58206:CDS | 45.0% |
| !! | TAGGGTGTCGGATATTATGC+CGG | - | chr8.2:4591121-4591140 | None:intergenic | 45.0% |
| AACATCCTTGCCGGAAGAAG+AGG | - | chr8.2:4590968-4590987 | None:intergenic | 50.0% | |
| ACCCTGTCCAACTTTACCCT+GGG | + | chr8.2:4592253-4592272 | MS.gene58206:CDS | 50.0% | |
| AGACCCTGAGACTCGAATGA+TGG | - | chr8.2:4591781-4591800 | None:intergenic | 50.0% | |
| CAATGGAAGAGGTTCCACAG+GGG | + | chr8.2:4592087-4592106 | MS.gene58206:CDS | 50.0% | |
| CCCAACTTGAAGGAAAGGCT+TGG | + | chr8.2:4591663-4591682 | MS.gene58206:CDS | 50.0% | |
| CCCAAGCCTTTCCTTCAAGT+TGG | - | chr8.2:4591667-4591686 | None:intergenic | 50.0% | |
| CTCGTGCGGTAGAATTTGAG+GGG | - | chr8.2:4590832-4590851 | None:intergenic | 50.0% | |
| GCTCGTGCGGTAGAATTTGA+GGG | - | chr8.2:4590833-4590852 | None:intergenic | 50.0% | |
| GGTAAGGACGCAACATCTCT+CGG | + | chr8.2:4592128-4592147 | MS.gene58206:CDS | 50.0% | |
| GTCCGAATTGACAGTTCAGG+AGG | + | chr8.2:4591873-4591892 | MS.gene58206:CDS | 50.0% | |
| TACTACTTAGCAACGGGAGC+AGG | + | chr8.2:4591996-4592015 | MS.gene58206:CDS | 50.0% | |
| TCCCAGGGTAAAGTTGGACA+GGG | - | chr8.2:4592257-4592276 | None:intergenic | 50.0% | |
| TCTGATGTGGCAACAAGTGC+AGG | + | chr8.2:4591972-4591991 | MS.gene58206:CDS | 50.0% | |
| TGAATCGGTGTGTAGGGTGT+CGG | - | chr8.2:4591133-4591152 | None:intergenic | 50.0% | |
| !!! | GCCGTTTTTAACACCCTCTG+AGG | - | chr8.2:4591076-4591095 | None:intergenic | 50.0% |
| AACTTTACCCTGGGAGGAGG+AGG | + | chr8.2:4592262-4592281 | MS.gene58206:CDS | 55.0% | |
| AAGAGGTTCCACAGGGGAAG+GGG | + | chr8.2:4592093-4592112 | MS.gene58206:CDS | 55.0% | |
| CACCCTGTCCAACTTTACCC+TGG | + | chr8.2:4592252-4592271 | MS.gene58206:CDS | 55.0% | |
| CGCTCGTGCGGTAGAATTTG+AGG | - | chr8.2:4590834-4590853 | None:intergenic | 55.0% | |
| CTCCCAGGGTAAAGTTGGAC+AGG | - | chr8.2:4592258-4592277 | None:intergenic | 55.0% | |
| CTGTCCAACTTTACCCTGGG+AGG | + | chr8.2:4592256-4592275 | MS.gene58206:CDS | 55.0% | |
| GAAGAGGTTCCACAGGGGAA+GGG | + | chr8.2:4592092-4592111 | MS.gene58206:CDS | 55.0% | |
| GGACGCAACATCTCTCGGTT+TGG | + | chr8.2:4592133-4592152 | MS.gene58206:CDS | 55.0% | |
| TCCAACTTTACCCTGGGAGG+AGG | + | chr8.2:4592259-4592278 | MS.gene58206:CDS | 55.0% | |
| TCCTCCTCCCAGGGTAAAGT+TGG | - | chr8.2:4592263-4592282 | None:intergenic | 55.0% | |
| !! | CACCCTACACACCGATTCAG+AGG | + | chr8.2:4591134-4591153 | MS.gene58206:CDS | 55.0% |
| !! | GGGGAAGGTTTGGACTGGTA+AGG | + | chr8.2:4592112-4592131 | MS.gene58206:CDS | 55.0% |
| CAAACCTTCCCCTTCCCCTG+TGG | - | chr8.2:4592104-4592123 | None:intergenic | 60.0% | |
| CACAGGGGAAGGGGAAGGTT+TGG | + | chr8.2:4592102-4592121 | MS.gene58206:CDS | 60.0% | |
| CTGCTAGCACTCCCCTCAGA+GGG | + | chr8.2:4591060-4591079 | MS.gene58206:CDS | 60.0% | |
| GCGGTGATATTGCGCTCGTG+CGG | - | chr8.2:4590846-4590865 | None:intergenic | 60.0% | |
| GGAAGAGGTTCCACAGGGGA+AGG | + | chr8.2:4592091-4592110 | MS.gene58206:CDS | 60.0% | |
| GGGAAGGGGAAGGTTTGGAC+TGG | + | chr8.2:4592107-4592126 | MS.gene58206:CDS | 60.0% | |
| TCTGCTAGCACTCCCCTCAG+AGG | + | chr8.2:4591059-4591078 | MS.gene58206:CDS | 60.0% | |
| GGTTCCACAGGGGAAGGGGA+AGG | + | chr8.2:4592097-4592116 | MS.gene58206:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.2 | gene | 4590790 | 4592364 | 4590790 | ID=MS.gene58206 |
| chr8.2 | mRNA | 4590790 | 4592364 | 4590790 | ID=MS.gene58206.t1;Parent=MS.gene58206 |
| chr8.2 | exon | 4590790 | 4591155 | 4590790 | ID=MS.gene58206.t1.exon1;Parent=MS.gene58206.t1 |
| chr8.2 | CDS | 4590790 | 4591155 | 4590790 | ID=cds.MS.gene58206.t1;Parent=MS.gene58206.t1 |
| chr8.2 | exon | 4591447 | 4592364 | 4591447 | ID=MS.gene58206.t1.exon2;Parent=MS.gene58206.t1 |
| chr8.2 | CDS | 4591447 | 4592364 | 4591447 | ID=cds.MS.gene58206.t1;Parent=MS.gene58206.t1 |
| Gene Sequence |
| Protein sequence |
