Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene58295.t1 | GAU18989.1 | 44 | 586 | 279 | 15 | 33 | 582 | 8 | 580 | 1.50E-113 | 420.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene58295.t1 | Q9C9C0 | 37.6 | 606 | 335 | 13 | 6 | 582 | 16 | 607 | 3.1e-99 | 364.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene58295.t1 | A0A2Z6LLX4 | 44.0 | 586 | 279 | 15 | 33 | 582 | 8 | 580 | 1.1e-113 | 420.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene060134 | MS.gene58295 | 0.848227 | 7.01E-60 | -1.69E-46 |
| MS.gene060135 | MS.gene58295 | 0.869917 | 2.16E-66 | -1.69E-46 |
| MS.gene060332 | MS.gene58295 | 0.815213 | 1.04E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene58295.t1 | MTR_4g112860 | 45.149 | 536 | 245 | 13 | 79 | 582 | 71 | 589 | 5.41e-137 | 413 |
| MS.gene58295.t1 | MTR_2g058970 | 41.808 | 531 | 271 | 9 | 79 | 583 | 84 | 602 | 9.27e-127 | 387 |
| MS.gene58295.t1 | MTR_4g112860 | 42.678 | 478 | 233 | 12 | 79 | 528 | 71 | 535 | 3.68e-107 | 334 |
| MS.gene58295.t1 | MTR_4g123500 | 39.785 | 465 | 239 | 8 | 130 | 582 | 5 | 440 | 3.41e-93 | 294 |
| MS.gene58295.t1 | MTR_4g112820 | 38.113 | 530 | 234 | 15 | 65 | 581 | 37 | 485 | 4.03e-91 | 289 |
| MS.gene58295.t1 | MTR_4g112860 | 41.958 | 429 | 203 | 13 | 79 | 479 | 71 | 481 | 1.34e-90 | 288 |
| MS.gene58295.t1 | MTR_5g025810 | 32.039 | 515 | 201 | 13 | 76 | 582 | 32 | 405 | 1.08e-61 | 213 |
| MS.gene58295.t1 | MTR_4g112860 | 41.139 | 316 | 149 | 10 | 75 | 369 | 67 | 366 | 2.03e-60 | 206 |
| MS.gene58295.t1 | MTR_4g130360 | 33.405 | 464 | 208 | 15 | 2 | 445 | 6 | 388 | 2.14e-56 | 197 |
| MS.gene58295.t1 | MTR_4g130360 | 64.815 | 54 | 17 | 1 | 531 | 582 | 392 | 445 | 1.27e-12 | 70.5 |
| MS.gene58295.t1 | MTR_4g114810 | 30.876 | 502 | 201 | 13 | 85 | 582 | 55 | 414 | 2.59e-51 | 184 |
| MS.gene58295.t1 | MTR_4g130550 | 56.497 | 177 | 68 | 2 | 375 | 551 | 64 | 231 | 4.81e-50 | 173 |
| MS.gene58295.t1 | MTR_8g022470 | 34.582 | 347 | 184 | 9 | 244 | 582 | 2 | 313 | 5.24e-45 | 162 |
| MS.gene58295.t1 | MTR_8g022500 | 45.714 | 210 | 102 | 5 | 376 | 582 | 225 | 425 | 5.77e-42 | 159 |
| MS.gene58295.t1 | MTR_8g022500 | 31.977 | 172 | 70 | 4 | 53 | 223 | 33 | 158 | 8.79e-15 | 77.8 |
| MS.gene58295.t1 | MTR_5g082990 | 32.184 | 348 | 182 | 9 | 210 | 553 | 12 | 309 | 1.48e-39 | 149 |
| MS.gene58295.t1 | MTR_4g134260 | 39.207 | 227 | 116 | 5 | 317 | 538 | 145 | 354 | 5.00e-38 | 145 |
| MS.gene58295.t1 | MTR_4g134260 | 54.369 | 103 | 35 | 3 | 121 | 221 | 27 | 119 | 1.73e-24 | 106 |
| MS.gene58295.t1 | MTR_4g133130 | 36.134 | 238 | 96 | 5 | 351 | 582 | 38 | 225 | 4.13e-27 | 116 |
| MS.gene58295.t1 | MTR_5g083090 | 38.378 | 185 | 79 | 6 | 107 | 288 | 7 | 159 | 3.81e-23 | 96.7 |
| MS.gene58295.t1 | MTR_5g083100 | 34.266 | 143 | 73 | 4 | 443 | 583 | 122 | 245 | 4.47e-15 | 78.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene58295.t1 | AT1G73990 | 40.000 | 530 | 280 | 9 | 79 | 582 | 90 | 607 | 4.98e-119 | 367 |
| MS.gene58295.t1 | AT1G73990 | 37.448 | 478 | 261 | 9 | 79 | 530 | 90 | 555 | 4.93e-93 | 298 |
Find 135 sgRNAs with CRISPR-Local
Find 161 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTGATTTCGTCCCGCATTC+TGG | 0.209844 | 8.4:-4584524 | MS.gene58295:CDS |
| GAAGATGAGCGGATCATAAA+TGG | 0.215556 | 8.4:-4583276 | MS.gene58295:CDS |
| ATAGATTGTAGGTTACTTTC+AGG | 0.236540 | 8.4:-4583840 | MS.gene58295:CDS |
| TTGTGAATGTGAGGGGTTTC+GGG | 0.245290 | 8.4:+4584695 | None:intergenic |
| TTTGTGAATGTGAGGGGTTT+CGG | 0.257624 | 8.4:+4584694 | None:intergenic |
| CTCACTTATACATGTCAAAT+TGG | 0.274908 | 8.4:-4583426 | MS.gene58295:CDS |
| GAGAGTTCAACCAGATTAAT+AGG | 0.304701 | 8.4:+4583054 | None:intergenic |
| AGATTGCCCAAGGGCGGCTT+TGG | 0.320112 | 8.4:-4583179 | MS.gene58295:CDS |
| ATGGTTCAGTGCCGCCTTCC+CGG | 0.330903 | 8.4:+4583155 | None:intergenic |
| TTGTATAACTTCTCAGTGTT+TGG | 0.338375 | 8.4:+4583387 | None:intergenic |
| TAGGTTACTTTCAGGGTTGA+TGG | 0.343659 | 8.4:-4583832 | MS.gene58295:CDS |
| AGGTATATTAGCCTTCAATT+TGG | 0.345021 | 8.4:+4583086 | None:intergenic |
| GGGCTATCAATACTTGTATC+TGG | 0.347744 | 8.4:+4584092 | None:intergenic |
| TAGAAAATTGGATAGATTGT+AGG | 0.350787 | 8.4:-4583851 | MS.gene58295:CDS |
| ACCAGTTGGCACTGACTCTA+AGG | 0.365682 | 8.4:-4584399 | MS.gene58295:CDS |
| TCCCGGTCCAAAGCCGCCCT+TGG | 0.369925 | 8.4:+4583172 | None:intergenic |
| TTGTTATGGTTTCTTCTTCA+AGG | 0.372590 | 8.4:-4583929 | MS.gene58295:CDS |
| ATTGAGATTATCCGTGGGGC+TGG | 0.376386 | 8.4:-4583642 | MS.gene58295:CDS |
| ATCGGTGTTATTAGAGTTTG+TGG | 0.378619 | 8.4:-4583696 | MS.gene58295:CDS |
| AAGATGTAACTGGCTTGTTA+TGG | 0.382012 | 8.4:-4583943 | MS.gene58295:CDS |
| TCTTCTTCCACTTCAGGTAA+TGG | 0.382352 | 8.4:-4584575 | MS.gene58295:CDS |
| ATTGTCGTGAAGTAGAAAAT+TGG | 0.383838 | 8.4:-4583863 | MS.gene58295:CDS |
| TCATCTTCATGTGGCATGAT+TGG | 0.388034 | 8.4:+4583291 | None:intergenic |
| ACGGGTCTCAGTAGGAGATT+TGG | 0.389865 | 8.4:-4583792 | MS.gene58295:CDS |
| GCCCAAGGGCGGCTTTGGAC+CGG | 0.392493 | 8.4:-4583174 | MS.gene58295:CDS |
| TCAAAATAGACCTATTAATC+TGG | 0.409814 | 8.4:-4583064 | MS.gene58295:CDS |
| CTCCTCCTGGACTGTCAATC+CGG | 0.422871 | 8.4:+4583589 | None:intergenic |
| CCCAAGGGCGGCTTTGGACC+GGG | 0.429403 | 8.4:-4583173 | MS.gene58295:CDS |
| GGTGCATATTTGATTGCAAC+TGG | 0.441687 | 8.4:-4583474 | MS.gene58295:CDS |
| CCCGGTCCAAAGCCGCCCTT+GGG | 0.444189 | 8.4:+4583173 | None:intergenic |
| GAAGTTTACAAAGTCTTTGT+GGG | 0.446335 | 8.4:-4583246 | MS.gene58295:CDS |
| GATCAAATGCGGCTTTCATA+AGG | 0.449687 | 8.4:+4584348 | None:intergenic |
| GGAATCGATGAAGGCAGTTA+AGG | 0.451737 | 8.4:-4583973 | MS.gene58295:CDS |
| TATTTGATTGCAACTGGAGC+AGG | 0.455192 | 8.4:-4583468 | MS.gene58295:CDS |
| AACACGGTCCACAATGGAAA+TGG | 0.473603 | 8.4:+4584643 | None:intergenic |
| TAAATACAATCCGTGTTCAC+AGG | 0.476299 | 8.4:+4584071 | None:intergenic |
| TAGTGTGCGGTAGAATTTGA+GGG | 0.478545 | 8.4:+4584670 | None:intergenic |
| CACATCTACACTTAACGATC+TGG | 0.479653 | 8.4:+4583209 | None:intergenic |
| GACGAAATCAAACTCACCCT+TGG | 0.479725 | 8.4:+4584535 | None:intergenic |
| ACCTTAGAGTCAGTGCCAAC+TGG | 0.479839 | 8.4:+4584398 | None:intergenic |
| ATGAATTGCACCTTCATTGT+GGG | 0.482660 | 8.4:+4583671 | None:intergenic |
| AGAAGTTTACAAAGTCTTTG+TGG | 0.483301 | 8.4:-4583247 | MS.gene58295:CDS |
| ACCGTTACCATTACCTGAAG+TGG | 0.483377 | 8.4:+4584568 | None:intergenic |
| TTGAGATTATCCGTGGGGCT+GGG | 0.490077 | 8.4:-4583641 | MS.gene58295:CDS |
| CTTCAAGAAATTTATTGTGA+AGG | 0.493765 | 8.4:-4584501 | MS.gene58295:CDS |
| CTATCTTCACACCATAATAC+AGG | 0.496409 | 8.4:+4584182 | None:intergenic |
| ATCTTGTTGAAGTGCAGTAT+AGG | 0.498853 | 8.4:-4584043 | MS.gene58295:CDS |
| TAGATTGTAGGTTACTTTCA+GGG | 0.501518 | 8.4:-4583839 | MS.gene58295:CDS |
| ATAGTGTGCGGTAGAATTTG+AGG | 0.507587 | 8.4:+4584669 | None:intergenic |
| CTTGTATCTGGAGAATCATC+CGG | 0.508155 | 8.4:+4584104 | None:intergenic |
| AGGATGATATAAGATGTAAC+TGG | 0.510806 | 8.4:-4583953 | MS.gene58295:CDS |
| GAAGTGCAGTATAGGACAGC+GGG | 0.512732 | 8.4:-4584035 | MS.gene58295:CDS |
| TGTTGCTATAGCCAAATTGA+AGG | 0.514181 | 8.4:-4583097 | MS.gene58295:CDS |
| ACAGCGGGGAAATACAAATC+TGG | 0.516542 | 8.4:-4584020 | MS.gene58295:CDS |
| CAAGCGCGTCAACCAACATA+TGG | 0.522040 | 8.4:+4583136 | None:intergenic |
| ATGTTGGTTGACGCGCTTGG+TGG | 0.522308 | 8.4:-4583132 | MS.gene58295:CDS |
| CGTTTCTTCATTATCAGACA+AGG | 0.522976 | 8.4:-4583505 | MS.gene58295:CDS |
| TGCACTGTTGGTATGTCAAA+TGG | 0.523328 | 8.4:-4583729 | MS.gene58295:CDS |
| ATTTCTTGAAGCCAGAATGC+GGG | 0.525455 | 8.4:+4584513 | None:intergenic |
| ACGAAATCAAACTCACCCTT+GGG | 0.529474 | 8.4:+4584536 | None:intergenic |
| GTTTGAAGGCTGTAATCCTC+CGG | 0.530693 | 8.4:-4583608 | MS.gene58295:CDS |
| TTACAAGGAAATATTTCCGA+TGG | 0.530898 | 8.4:-4584422 | MS.gene58295:CDS |
| TTACAAAGTCTTTGTGGGCA+AGG | 0.531876 | 8.4:-4583241 | MS.gene58295:CDS |
| AAGATGAGCGGATCATAAAT+GGG | 0.535057 | 8.4:-4583275 | MS.gene58295:CDS |
| TAAATATGCAGAATTATTTG+AGG | 0.535075 | 8.4:-4583325 | MS.gene58295:CDS |
| GTCAGTGCCAACTGGTCCAT+CGG | 0.538824 | 8.4:+4584406 | None:intergenic |
| TGAAGGATGGGAATCGATGA+AGG | 0.539636 | 8.4:-4583982 | MS.gene58295:CDS |
| GGACATTTAACCACAGATGA+AGG | 0.540268 | 8.4:-4583999 | MS.gene58295:CDS |
| ACTATCTTCCATTTCCATTG+TGG | 0.545148 | 8.4:-4584651 | MS.gene58295:CDS |
| GTTGTTTGAGATGAAGATGA+AGG | 0.549690 | 8.4:+4584739 | None:intergenic |
| GCCTCGGAGCATGTGGAACA+TGG | 0.549933 | 8.4:-4584464 | MS.gene58295:CDS |
| AGATTATCACGGGTCTCAGT+AGG | 0.550801 | 8.4:-4583800 | MS.gene58295:CDS |
| CATGAATTGCACCTTCATTG+TGG | 0.551816 | 8.4:+4583670 | None:intergenic |
| GCGGCTTTGGACCGGGAAGG+CGG | 0.553063 | 8.4:-4583166 | MS.gene58295:CDS |
| ACTAACGTTGGTTCTTGAGT+AGG | 0.554396 | 8.4:+4584605 | None:intergenic |
| TTCAAGGAAAATAAGAGAAG+AGG | 0.555199 | 8.4:-4583913 | MS.gene58295:CDS |
| GTTTGTGGATCCCACAATGA+AGG | 0.556262 | 8.4:-4583681 | MS.gene58295:CDS |
| AGGGCGGCTTTGGACCGGGA+AGG | 0.558400 | 8.4:-4583169 | MS.gene58295:CDS |
| GATTTGATTGAGATTATCCG+TGG | 0.559731 | 8.4:-4583648 | MS.gene58295:CDS |
| CTGTTGGTATGTCAAATGGC+AGG | 0.562620 | 8.4:-4583725 | MS.gene58295:CDS |
| TCCACTTCAGGTAATGGTAA+CGG | 0.563991 | 8.4:-4584569 | MS.gene58295:CDS |
| TCTGTTAGCCTCGGAGCATG+TGG | 0.564327 | 8.4:-4584471 | MS.gene58295:CDS |
| TCTGATAATGAAGAAACGAC+TGG | 0.568882 | 8.4:+4583510 | None:intergenic |
| ATTTAACCACAGATGAAGGA+TGG | 0.568911 | 8.4:-4583995 | MS.gene58295:CDS |
| GAGAAGTTATACAAATACAT+TGG | 0.571158 | 8.4:-4583378 | MS.gene58295:CDS |
| GGGGTTTCGGGAAGATGAAG+AGG | 0.574598 | 8.4:+4584707 | None:intergenic |
| AAATACAATCCGTGTTCACA+GGG | 0.575360 | 8.4:+4584072 | None:intergenic |
| ATATTGAGAATCAATTTACA+AGG | 0.578147 | 8.4:-4584437 | MS.gene58295:CDS |
| TGAGGGATTTGTGAATGTGA+GGG | 0.580001 | 8.4:+4584687 | None:intergenic |
| GCTAGTGATAAGATTATCAC+GGG | 0.582665 | 8.4:-4583810 | MS.gene58295:CDS |
| GTGGTTGACGAGATTGCCCA+AGG | 0.585641 | 8.4:-4583189 | MS.gene58295:CDS |
| AATTATTTGAGGCTGATCAT+CGG | 0.586001 | 8.4:-4583314 | MS.gene58295:CDS |
| TTGACGAGATTGCCCAAGGG+CGG | 0.586860 | 8.4:-4583185 | MS.gene58295:CDS |
| ATCCTCCGGATTGACAGTCC+AGG | 0.587117 | 8.4:-4583594 | MS.gene58295:CDS |
| TATTGATAGCCCTGTGAACA+CGG | 0.587964 | 8.4:-4584081 | MS.gene58295:CDS |
| CATATGTTGGTTGACGCGCT+TGG | 0.589554 | 8.4:-4583135 | MS.gene58295:CDS |
| CGATTCCCATCCTTCATCTG+TGG | 0.594942 | 8.4:+4583989 | None:intergenic |
| GGCGGCACTGAACCATATGT+TGG | 0.595357 | 8.4:-4583148 | MS.gene58295:CDS |
| GGCTAGTGATAAGATTATCA+CGG | 0.596190 | 8.4:-4583811 | MS.gene58295:CDS |
| GGTTAAGACTCTGTTAGCCT+CGG | 0.596334 | 8.4:-4584480 | MS.gene58295:CDS |
| AATATTTCCGATGGACCAGT+TGG | 0.597583 | 8.4:-4584413 | MS.gene58295:CDS |
| TCTGGAGAATCATCCGGAGG+GGG | 0.598601 | 8.4:+4584110 | None:intergenic |
| TTTAACCACAGATGAAGGAT+GGG | 0.605296 | 8.4:-4583994 | MS.gene58295:CDS |
| TTGAGGGATTTGTGAATGTG+AGG | 0.606072 | 8.4:+4584686 | None:intergenic |
| GAGGGATTTGTGAATGTGAG+GGG | 0.607039 | 8.4:+4584688 | None:intergenic |
| CTTTGTGGGCAAGGTAGCGA+CGG | 0.609032 | 8.4:-4583232 | MS.gene58295:CDS |
| CTCCTGGACTGTCAATCCGG+AGG | 0.612922 | 8.4:+4583592 | None:intergenic |
| CAGATCGTTAAGTGTAGATG+TGG | 0.613543 | 8.4:-4583208 | MS.gene58295:CDS |
| TGTTGGTATGTCAAATGGCA+GGG | 0.616785 | 8.4:-4583724 | MS.gene58295:CDS |
| AATTTCTTGAAGCCAGAATG+CGG | 0.621440 | 8.4:+4584512 | None:intergenic |
| TGCTGCAACACGGTCCACAA+TGG | 0.622831 | 8.4:+4584637 | None:intergenic |
| TATCTGGAGAATCATCCGGA+GGG | 0.623341 | 8.4:+4584108 | None:intergenic |
| TCAAATGGCAGGGAAAAGAT+CGG | 0.628546 | 8.4:-4583714 | MS.gene58295:CDS |
| AAGGAGGTTCTTCACAGAGG+TGG | 0.630578 | 8.4:-4583348 | MS.gene58295:CDS |
| GAAGATGAAAACACTAACGT+TGG | 0.631994 | 8.4:+4584593 | None:intergenic |
| ATGATCCGCTCATCTTCATG+TGG | 0.633308 | 8.4:+4583282 | None:intergenic |
| ATCTGGAGAATCATCCGGAG+GGG | 0.638622 | 8.4:+4584109 | None:intergenic |
| TTATCAGACAAGGCAACTAG+TGG | 0.639169 | 8.4:-4583495 | MS.gene58295:CDS |
| GTATCTGGAGAATCATCCGG+AGG | 0.659830 | 8.4:+4584107 | None:intergenic |
| ATTTGATTGAGATTATCCGT+GGG | 0.666741 | 8.4:-4583647 | MS.gene58295:CDS |
| AGAAACACAGCGGACACACG+AGG | 0.666748 | 8.4:+4584326 | None:intergenic |
| TTTCGGGAAGATGAAGAGGA+TGG | 0.668798 | 8.4:+4584711 | None:intergenic |
| TCATGCCACATGAAGATGAG+CGG | 0.671782 | 8.4:-4583287 | MS.gene58295:CDS |
| AAGAAGGAGGTTCTTCACAG+AGG | 0.681303 | 8.4:-4583351 | MS.gene58295:CDS |
| CTCCGGATTGACAGTCCAGG+AGG | 0.681617 | 8.4:-4583591 | MS.gene58295:CDS |
| TGGTTGACGAGATTGCCCAA+GGG | 0.693802 | 8.4:-4583188 | MS.gene58295:CDS |
| GAAGTAAAGATGCTGCAACA+CGG | 0.695209 | 8.4:+4584627 | None:intergenic |
| TCCATGTTCCACATGCTCCG+AGG | 0.700945 | 8.4:+4584463 | None:intergenic |
| TATGCTTTGAAATCGAGCAG+TGG | 0.712517 | 8.4:+4583768 | None:intergenic |
| TGGAAATGGAAGATAGTGTG+CGG | 0.715103 | 8.4:+4584657 | None:intergenic |
| TGAAGTGCAGTATAGGACAG+CGG | 0.718438 | 8.4:-4584036 | MS.gene58295:CDS |
| AACTATATTAAGAAACACAG+CGG | 0.726464 | 8.4:+4584316 | None:intergenic |
| AAGTGCAGTATAGGACAGCG+GGG | 0.749747 | 8.4:-4584034 | MS.gene58295:CDS |
| TTTGATTGAGATTATCCGTG+GGG | 0.755479 | 8.4:-4583646 | MS.gene58295:CDS |
| GGACACACGAGGATCAAATG+CGG | 0.763717 | 8.4:+4584337 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATATCAAATTTTAAAAAATC+TGG | - | chr8.4:4583575-4583594 | MS.gene58295:CDS | 10.0% |
| !!! | AATATAGTTGATTTTTATTG+TGG | - | chr8.4:4583521-4583540 | MS.gene58295:CDS | 15.0% |
| !!! | TTTTAAAAAATCTGGTAAAA+AGG | - | chr8.4:4583583-4583602 | MS.gene58295:CDS | 15.0% |
| !! | ATATTGAGAATCAATTTACA+AGG | - | chr8.4:4583386-4583405 | MS.gene58295:CDS | 20.0% |
| !! | TAAATATGCAGAATTATTTG+AGG | - | chr8.4:4584498-4584517 | MS.gene58295:CDS | 20.0% |
| !!! | TAAAAAGGTTATAGCTTTTA+TGG | - | chr8.4:4583598-4583617 | MS.gene58295:CDS | 20.0% |
| ! | AACTATATTAAGAAACACAG+CGG | + | chr8.4:4583510-4583529 | None:intergenic | 25.0% |
| ! | CTTCAAGAAATTTATTGTGA+AGG | - | chr8.4:4583322-4583341 | MS.gene58295:CDS | 25.0% |
| ! | GAGAAGTTATACAAATACAT+TGG | - | chr8.4:4584445-4584464 | MS.gene58295:CDS | 25.0% |
| ! | TAGAAAATTGGATAGATTGT+AGG | - | chr8.4:4583972-4583991 | MS.gene58295:CDS | 25.0% |
| ! | TCAAAATAGACCTATTAATC+TGG | - | chr8.4:4584759-4584778 | MS.gene58295:CDS | 25.0% |
| !! | AGATTAATAGGTCTATTTTG+AGG | + | chr8.4:4584760-4584779 | None:intergenic | 25.0% |
| !!! | AGTTGATTTTTATTGTGGTT+GGG | - | chr8.4:4583526-4583545 | MS.gene58295:CDS | 25.0% |
| !!! | CAAATACATTGGTTTTAAGA+AGG | - | chr8.4:4584456-4584475 | MS.gene58295:CDS | 25.0% |
| !!! | TAGTTGATTTTTATTGTGGT+TGG | - | chr8.4:4583525-4583544 | MS.gene58295:CDS | 25.0% |
| AGAAGTTTACAAAGTCTTTG+TGG | - | chr8.4:4584576-4584595 | MS.gene58295:CDS | 30.0% | |
| AGGATGATATAAGATGTAAC+TGG | - | chr8.4:4583870-4583889 | MS.gene58295:CDS | 30.0% | |
| ATTGTCGTGAAGTAGAAAAT+TGG | - | chr8.4:4583960-4583979 | MS.gene58295:CDS | 30.0% | |
| ATTTGATTGAGATTATCCGT+GGG | - | chr8.4:4584176-4584195 | MS.gene58295:CDS | 30.0% | |
| CAAGTTAAAAAATGCACTGT+TGG | - | chr8.4:4584082-4584101 | MS.gene58295:CDS | 30.0% | |
| CTCACTTATACATGTCAAAT+TGG | - | chr8.4:4584397-4584416 | MS.gene58295:CDS | 30.0% | |
| GAAGTTTACAAAGTCTTTGT+GGG | - | chr8.4:4584577-4584596 | MS.gene58295:CDS | 30.0% | |
| TTACAAGGAAATATTTCCGA+TGG | - | chr8.4:4583401-4583420 | MS.gene58295:CDS | 30.0% | |
| TTCAAGGAAAATAAGAGAAG+AGG | - | chr8.4:4583910-4583929 | MS.gene58295:CDS | 30.0% | |
| TTGTATAACTTCTCAGTGTT+TGG | + | chr8.4:4584439-4584458 | None:intergenic | 30.0% | |
| TTGTTATGGTTTCTTCTTCA+AGG | - | chr8.4:4583894-4583913 | MS.gene58295:CDS | 30.0% | |
| ! | AATTATTTGAGGCTGATCAT+CGG | - | chr8.4:4584509-4584528 | MS.gene58295:CDS | 30.0% |
| ! | ATAGATTGTAGGTTACTTTC+AGG | - | chr8.4:4583983-4584002 | MS.gene58295:CDS | 30.0% |
| ! | TAGATTGTAGGTTACTTTCA+GGG | - | chr8.4:4583984-4584003 | MS.gene58295:CDS | 30.0% |
| ! | TAGCTTTTATGGCTTCATTT+TGG | - | chr8.4:4583609-4583628 | MS.gene58295:CDS | 30.0% |
| !! | AGGTATATTAGCCTTCAATT+TGG | + | chr8.4:4584740-4584759 | None:intergenic | 30.0% |
| !! | TTTTGTTGGCTGATCAATTA+TGG | - | chr8.4:4584260-4584279 | MS.gene58295:CDS | 30.0% |
| !!! | ATACATTGGTTTTAAGAAGG+AGG | - | chr8.4:4584459-4584478 | MS.gene58295:CDS | 30.0% |
| !!! | GAGGAGATTCTAACTTTTTT+TGG | - | chr8.4:4583929-4583948 | MS.gene58295:CDS | 30.0% |
| !!! | TCTAACTTTTTTTGGTAGTG+AGG | - | chr8.4:4583937-4583956 | MS.gene58295:CDS | 30.0% |
| AAATACAATCCGTGTTCACA+GGG | + | chr8.4:4583754-4583773 | None:intergenic | 35.0% | |
| AAGATGAGCGGATCATAAAT+GGG | - | chr8.4:4584548-4584567 | MS.gene58295:CDS | 35.0% | |
| AATTTCTTGAAGCCAGAATG+CGG | + | chr8.4:4583314-4583333 | None:intergenic | 35.0% | |
| ACTATCTTCCATTTCCATTG+TGG | - | chr8.4:4583172-4583191 | MS.gene58295:CDS | 35.0% | |
| ATCTTGTTGAAGTGCAGTAT+AGG | - | chr8.4:4583780-4583799 | MS.gene58295:CDS | 35.0% | |
| ATGAATTGCACCTTCATTGT+GGG | + | chr8.4:4584155-4584174 | None:intergenic | 35.0% | |
| ATTTAACCACAGATGAAGGA+TGG | - | chr8.4:4583828-4583847 | MS.gene58295:CDS | 35.0% | |
| CGTTTCTTCATTATCAGACA+AGG | - | chr8.4:4584318-4584337 | MS.gene58295:CDS | 35.0% | |
| CTATCTTCACACCATAATAC+AGG | + | chr8.4:4583644-4583663 | None:intergenic | 35.0% | |
| GAAGATGAAAACACTAACGT+TGG | + | chr8.4:4583233-4583252 | None:intergenic | 35.0% | |
| GAGAGTTCAACCAGATTAAT+AGG | + | chr8.4:4584772-4584791 | None:intergenic | 35.0% | |
| GATTTGATTGAGATTATCCG+TGG | - | chr8.4:4584175-4584194 | MS.gene58295:CDS | 35.0% | |
| GCTAGTGATAAGATTATCAC+GGG | - | chr8.4:4584013-4584032 | MS.gene58295:CDS | 35.0% | |
| GGCTAGTGATAAGATTATCA+CGG | - | chr8.4:4584012-4584031 | MS.gene58295:CDS | 35.0% | |
| TAAATACAATCCGTGTTCAC+AGG | + | chr8.4:4583755-4583774 | None:intergenic | 35.0% | |
| TGGGTCATCAAAAAGTTTGA+AGG | - | chr8.4:4584201-4584220 | MS.gene58295:CDS | 35.0% | |
| TGTTGCTATAGCCAAATTGA+AGG | - | chr8.4:4584726-4584745 | MS.gene58295:CDS | 35.0% | |
| TTTAACCACAGATGAAGGAT+GGG | - | chr8.4:4583829-4583848 | MS.gene58295:CDS | 35.0% | |
| TTTGATTGAGATTATCCGTG+GGG | - | chr8.4:4584177-4584196 | MS.gene58295:CDS | 35.0% | |
| ! | ATAAGGTTTTCACTTAGCTG+AGG | + | chr8.4:4583461-4583480 | None:intergenic | 35.0% |
| ! | GTTGTTTGAGATGAAGATGA+AGG | + | chr8.4:4583087-4583106 | None:intergenic | 35.0% |
| ! | TCTGATAATGAAGAAACGAC+TGG | + | chr8.4:4584316-4584335 | None:intergenic | 35.0% |
| ! | TTTTCATCTTCTTCCACTTC+AGG | - | chr8.4:4583242-4583261 | MS.gene58295:CDS | 35.0% |
| !! | AAGATGTAACTGGCTTGTTA+TGG | - | chr8.4:4583880-4583899 | MS.gene58295:CDS | 35.0% |
| !! | ATCGGTGTTATTAGAGTTTG+TGG | - | chr8.4:4584127-4584146 | MS.gene58295:CDS | 35.0% |
| AATATTTCCGATGGACCAGT+TGG | - | chr8.4:4583410-4583429 | MS.gene58295:CDS | 40.0% | |
| ACGAAATCAAACTCACCCTT+GGG | + | chr8.4:4583290-4583309 | None:intergenic | 40.0% | |
| ATAGTGTGCGGTAGAATTTG+AGG | + | chr8.4:4583157-4583176 | None:intergenic | 40.0% | |
| ATTTCTTGAAGCCAGAATGC+GGG | + | chr8.4:4583313-4583332 | None:intergenic | 40.0% | |
| CACATCTACACTTAACGATC+TGG | + | chr8.4:4584617-4584636 | None:intergenic | 40.0% | |
| CAGATCGTTAAGTGTAGATG+TGG | - | chr8.4:4584615-4584634 | MS.gene58295:CDS | 40.0% | |
| CATGAATTGCACCTTCATTG+TGG | + | chr8.4:4584156-4584175 | None:intergenic | 40.0% | |
| CTTGTATCTGGAGAATCATC+CGG | + | chr8.4:4583722-4583741 | None:intergenic | 40.0% | |
| GAAGATGAGCGGATCATAAA+TGG | - | chr8.4:4584547-4584566 | MS.gene58295:CDS | 40.0% | |
| GAAGTAAAGATGCTGCAACA+CGG | + | chr8.4:4583199-4583218 | None:intergenic | 40.0% | |
| GATCAAATGCGGCTTTCATA+AGG | + | chr8.4:4583478-4583497 | None:intergenic | 40.0% | |
| GGACATTTAACCACAGATGA+AGG | - | chr8.4:4583824-4583843 | MS.gene58295:CDS | 40.0% | |
| GGGCTATCAATACTTGTATC+TGG | + | chr8.4:4583734-4583753 | None:intergenic | 40.0% | |
| GGTGCATATTTGATTGCAAC+TGG | - | chr8.4:4584349-4584368 | MS.gene58295:CDS | 40.0% | |
| TAGTGTGCGGTAGAATTTGA+GGG | + | chr8.4:4583156-4583175 | None:intergenic | 40.0% | |
| TATTTGATTGCAACTGGAGC+AGG | - | chr8.4:4584355-4584374 | MS.gene58295:CDS | 40.0% | |
| TCAAATGGCAGGGAAAAGAT+CGG | - | chr8.4:4584109-4584128 | MS.gene58295:CDS | 40.0% | |
| TCATCTTCATGTGGCATGAT+TGG | + | chr8.4:4584535-4584554 | None:intergenic | 40.0% | |
| TCTTCTTCCACTTCAGGTAA+TGG | - | chr8.4:4583248-4583267 | MS.gene58295:CDS | 40.0% | |
| TGAGGGATTTGTGAATGTGA+GGG | + | chr8.4:4583139-4583158 | None:intergenic | 40.0% | |
| TGCACTGTTGGTATGTCAAA+TGG | - | chr8.4:4584094-4584113 | MS.gene58295:CDS | 40.0% | |
| TGGAAATGGAAGATAGTGTG+CGG | + | chr8.4:4583169-4583188 | None:intergenic | 40.0% | |
| TGTTGGTATGTCAAATGGCA+GGG | - | chr8.4:4584099-4584118 | MS.gene58295:CDS | 40.0% | |
| TTACAAAGTCTTTGTGGGCA+AGG | - | chr8.4:4584582-4584601 | MS.gene58295:CDS | 40.0% | |
| TTATCAGACAAGGCAACTAG+TGG | - | chr8.4:4584328-4584347 | MS.gene58295:CDS | 40.0% | |
| TTGAGGGATTTGTGAATGTG+AGG | + | chr8.4:4583140-4583159 | None:intergenic | 40.0% | |
| TTTGTGAATGTGAGGGGTTT+CGG | + | chr8.4:4583132-4583151 | None:intergenic | 40.0% | |
| ! | TAGGTTACTTTCAGGGTTGA+TGG | - | chr8.4:4583991-4584010 | MS.gene58295:CDS | 40.0% |
| ! | TATTGATAGCCCTGTGAACA+CGG | - | chr8.4:4583742-4583761 | MS.gene58295:CDS | 40.0% |
| ! | TCCACTTCAGGTAATGGTAA+CGG | - | chr8.4:4583254-4583273 | MS.gene58295:CDS | 40.0% |
| ! | TCCAGGAGGAGAATTTTTGT+TGG | - | chr8.4:4584246-4584265 | MS.gene58295:CDS | 40.0% |
| !! | ACTAACGTTGGTTCTTGAGT+AGG | + | chr8.4:4583221-4583240 | None:intergenic | 40.0% |
| !! | TATGCTTTGAAATCGAGCAG+TGG | + | chr8.4:4584058-4584077 | None:intergenic | 40.0% |
| !!! | AACGGTGTTGATTTTCCCAA+GGG | - | chr8.4:4583272-4583291 | MS.gene58295:CDS | 40.0% |
| !!! | GGAGTTTTGAGCCTGTATTA+TGG | - | chr8.4:4583630-4583649 | MS.gene58295:CDS | 40.0% |
| !!! | TAACGGTGTTGATTTTCCCA+AGG | - | chr8.4:4583271-4583290 | MS.gene58295:CDS | 40.0% |
| AACACGGTCCACAATGGAAA+TGG | + | chr8.4:4583183-4583202 | None:intergenic | 45.0% | |
| AAGAAGGAGGTTCTTCACAG+AGG | - | chr8.4:4584472-4584491 | MS.gene58295:CDS | 45.0% | |
| ACAGCGGGGAAATACAAATC+TGG | - | chr8.4:4583803-4583822 | MS.gene58295:CDS | 45.0% | |
| ACCGTTACCATTACCTGAAG+TGG | + | chr8.4:4583258-4583277 | None:intergenic | 45.0% | |
| AGATTATCACGGGTCTCAGT+AGG | - | chr8.4:4584023-4584042 | MS.gene58295:CDS | 45.0% | |
| ATGATCCGCTCATCTTCATG+TGG | + | chr8.4:4584544-4584563 | None:intergenic | 45.0% | |
| CTGTTGGTATGTCAAATGGC+AGG | - | chr8.4:4584098-4584117 | MS.gene58295:CDS | 45.0% | |
| GACGAAATCAAACTCACCCT+TGG | + | chr8.4:4583291-4583310 | None:intergenic | 45.0% | |
| GAGGGATTTGTGAATGTGAG+GGG | + | chr8.4:4583138-4583157 | None:intergenic | 45.0% | |
| GCCAACAAAAATTCTCCTCC+TGG | + | chr8.4:4584250-4584269 | None:intergenic | 45.0% | |
| GGAATCGATGAAGGCAGTTA+AGG | - | chr8.4:4583850-4583869 | MS.gene58295:CDS | 45.0% | |
| GTTTGAAGGCTGTAATCCTC+CGG | - | chr8.4:4584215-4584234 | MS.gene58295:CDS | 45.0% | |
| GTTTGTGGATCCCACAATGA+AGG | - | chr8.4:4584142-4584161 | MS.gene58295:CDS | 45.0% | |
| TATCTGGAGAATCATCCGGA+GGG | + | chr8.4:4583718-4583737 | None:intergenic | 45.0% | |
| TCATGCCACATGAAGATGAG+CGG | - | chr8.4:4584536-4584555 | MS.gene58295:CDS | 45.0% | |
| TGAAGGATGGGAATCGATGA+AGG | - | chr8.4:4583841-4583860 | MS.gene58295:CDS | 45.0% | |
| TGAAGTGCAGTATAGGACAG+CGG | - | chr8.4:4583787-4583806 | MS.gene58295:CDS | 45.0% | |
| TTGTGAATGTGAGGGGTTTC+GGG | + | chr8.4:4583131-4583150 | None:intergenic | 45.0% | |
| TTTCGGGAAGATGAAGAGGA+TGG | + | chr8.4:4583115-4583134 | None:intergenic | 45.0% | |
| ! | GGTTAAGACTCTGTTAGCCT+CGG | - | chr8.4:4583343-4583362 | MS.gene58295:CDS | 45.0% |
| ! | TTTGATTTCGTCCCGCATTC+TGG | - | chr8.4:4583299-4583318 | MS.gene58295:CDS | 45.0% |
| AAGGAGGTTCTTCACAGAGG+TGG | - | chr8.4:4584475-4584494 | MS.gene58295:CDS | 50.0% | |
| AAGTGCAGTATAGGACAGCG+GGG | - | chr8.4:4583789-4583808 | MS.gene58295:CDS | 50.0% | |
| ACCTTAGAGTCAGTGCCAAC+TGG | + | chr8.4:4583428-4583447 | None:intergenic | 50.0% | |
| ACGGGTCTCAGTAGGAGATT+TGG | - | chr8.4:4584031-4584050 | MS.gene58295:CDS | 50.0% | |
| ATCTGGAGAATCATCCGGAG+GGG | + | chr8.4:4583717-4583736 | None:intergenic | 50.0% | |
| ATTGAGATTATCCGTGGGGC+TGG | - | chr8.4:4584181-4584200 | MS.gene58295:CDS | 50.0% | |
| CAAGCGCGTCAACCAACATA+TGG | + | chr8.4:4584690-4584709 | None:intergenic | 50.0% | |
| CGATTCCCATCCTTCATCTG+TGG | + | chr8.4:4583837-4583856 | None:intergenic | 50.0% | |
| GAAGTGCAGTATAGGACAGC+GGG | - | chr8.4:4583788-4583807 | MS.gene58295:CDS | 50.0% | |
| GGACACACGAGGATCAAATG+CGG | + | chr8.4:4583489-4583508 | None:intergenic | 50.0% | |
| GTATCTGGAGAATCATCCGG+AGG | + | chr8.4:4583719-4583738 | None:intergenic | 50.0% | |
| TGGTTGACGAGATTGCCCAA+GGG | - | chr8.4:4584635-4584654 | MS.gene58295:CDS | 50.0% | |
| TTGAGATTATCCGTGGGGCT+GGG | - | chr8.4:4584182-4584201 | MS.gene58295:CDS | 50.0% | |
| ! | CATATGTTGGTTGACGCGCT+TGG | - | chr8.4:4584688-4584707 | MS.gene58295:CDS | 50.0% |
| !! | ACCAGTTGGCACTGACTCTA+AGG | - | chr8.4:4583424-4583443 | MS.gene58295:CDS | 50.0% |
| !! | TTTTTGATGACCCAGCCCCA+CGG | + | chr8.4:4584195-4584214 | None:intergenic | 50.0% |
| AGAAACACAGCGGACACACG+AGG | + | chr8.4:4583500-4583519 | None:intergenic | 55.0% | |
| ATCCTCCGGATTGACAGTCC+AGG | - | chr8.4:4584229-4584248 | MS.gene58295:CDS | 55.0% | |
| CTCCTCCTGGACTGTCAATC+CGG | + | chr8.4:4584237-4584256 | None:intergenic | 55.0% | |
| CTTTGTGGGCAAGGTAGCGA+CGG | - | chr8.4:4584591-4584610 | MS.gene58295:CDS | 55.0% | |
| GGGGTTTCGGGAAGATGAAG+AGG | + | chr8.4:4583119-4583138 | None:intergenic | 55.0% | |
| GTCAGTGCCAACTGGTCCAT+CGG | + | chr8.4:4583420-4583439 | None:intergenic | 55.0% | |
| GTGGTTGACGAGATTGCCCA+AGG | - | chr8.4:4584634-4584653 | MS.gene58295:CDS | 55.0% | |
| TCCATGTTCCACATGCTCCG+AGG | + | chr8.4:4583363-4583382 | None:intergenic | 55.0% | |
| TCTGGAGAATCATCCGGAGG+GGG | + | chr8.4:4583716-4583735 | None:intergenic | 55.0% | |
| TGCTGCAACACGGTCCACAA+TGG | + | chr8.4:4583189-4583208 | None:intergenic | 55.0% | |
| TTGACGAGATTGCCCAAGGG+CGG | - | chr8.4:4584638-4584657 | MS.gene58295:CDS | 55.0% | |
| ! | ATGTTGGTTGACGCGCTTGG+TGG | - | chr8.4:4584691-4584710 | MS.gene58295:CDS | 55.0% |
| ! | GAATCATCCGGAGGGGGTTT+TGG | + | chr8.4:4583710-4583729 | None:intergenic | 55.0% |
| ! | GGCGGCACTGAACCATATGT+TGG | - | chr8.4:4584675-4584694 | MS.gene58295:CDS | 55.0% |
| ! | TCTGTTAGCCTCGGAGCATG+TGG | - | chr8.4:4583352-4583371 | MS.gene58295:CDS | 55.0% |
| AGATTGCCCAAGGGCGGCTT+TGG | - | chr8.4:4584644-4584663 | MS.gene58295:CDS | 60.0% | |
| ATGGTTCAGTGCCGCCTTCC+CGG | + | chr8.4:4584671-4584690 | None:intergenic | 60.0% | |
| CTCCGGATTGACAGTCCAGG+AGG | - | chr8.4:4584232-4584251 | MS.gene58295:CDS | 60.0% | |
| CTCCTGGACTGTCAATCCGG+AGG | + | chr8.4:4584234-4584253 | None:intergenic | 60.0% | |
| GCCTCGGAGCATGTGGAACA+TGG | - | chr8.4:4583359-4583378 | MS.gene58295:CDS | 60.0% | |
| TGCACCTCCAAAACCCCCTC+CGG | - | chr8.4:4583700-4583719 | MS.gene58295:CDS | 60.0% | |
| !! | TCATCCGGAGGGGGTTTTGG+AGG | + | chr8.4:4583707-4583726 | None:intergenic | 60.0% |
| CCCGGTCCAAAGCCGCCCTT+GGG | + | chr8.4:4584653-4584672 | None:intergenic | 70.0% | |
| TCCCGGTCCAAAGCCGCCCT+TGG | + | chr8.4:4584654-4584673 | None:intergenic | 70.0% | |
| !! | AGGGCGGCTTTGGACCGGGA+AGG | - | chr8.4:4584654-4584673 | MS.gene58295:CDS | 70.0% |
| !! | CCCAAGGGCGGCTTTGGACC+GGG | - | chr8.4:4584650-4584669 | MS.gene58295:CDS | 70.0% |
| !! | GCCCAAGGGCGGCTTTGGAC+CGG | - | chr8.4:4584649-4584668 | MS.gene58295:CDS | 70.0% |
| !! | GCGGCTTTGGACCGGGAAGG+CGG | - | chr8.4:4584657-4584676 | MS.gene58295:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.4 | gene | 4583047 | 4584798 | 4583047 | ID=MS.gene58295 |
| chr8.4 | mRNA | 4583047 | 4584798 | 4583047 | ID=MS.gene58295.t1;Parent=MS.gene58295 |
| chr8.4 | exon | 4583047 | 4584798 | 4583047 | ID=MS.gene58295.t1.exon1;Parent=MS.gene58295.t1 |
| chr8.4 | CDS | 4583047 | 4584798 | 4583047 | ID=cds.MS.gene58295.t1;Parent=MS.gene58295.t1 |
| Gene Sequence |
| Protein sequence |
