AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene58361

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene58361.t1 MTR_2g078730 97.674 344 8 0 1 344 1 344 0.0 691
MS.gene58361.t1 MTR_1g026860 58.642 324 127 3 26 343 60 382 2.14e-134 388
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene58361.t1 AT5G57850 57.994 319 130 2 26 343 58 373 1.86e-128 372
MS.gene58361.t1 AT5G57850 60.135 296 117 1 49 343 1 296 5.07e-128 369
MS.gene58361.t1 AT3G05190 23.297 279 196 7 55 324 267 536 3.19e-14 73.9
MS.gene58361.t1 AT3G05190 23.297 279 196 7 55 324 267 536 3.19e-14 73.9
MS.gene58361.t1 AT3G05190 23.297 279 196 7 55 324 267 536 3.19e-14 73.9
MS.gene58361.t1 AT5G27410 22.535 284 192 8 55 324 176 445 2.41e-12 68.2
MS.gene58361.t1 AT5G27410 22.535 284 192 8 55 324 641 910 2.76e-12 68.6
MS.gene58361.t1 AT5G27410 22.535 284 192 8 55 324 264 533 3.52e-12 67.8

Find 74 sgRNAs with CRISPR-Local

Find 153 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATATGGTTGCACTGCTAAA+AGG 0.283245 2.3:-19118023 MS.gene58361:CDS
GCTATGTATTCTAGTGTATA+TGG 0.321285 2.3:-19119071 MS.gene58361:CDS
TGTACCATGTGATCATCTAT+TGG 0.330668 2.3:+19119014 None:intergenic
GATTTCTTACTGTCATCTTC+AGG 0.332881 2.3:-19118336 MS.gene58361:CDS
CGAAGAGTTGATCGCGAAAA+AGG 0.334858 2.3:+19118438 None:intergenic
GGATTTGCTATGGGATGATA+TGG 0.343910 2.3:-19117471 MS.gene58361:CDS
CACCTTGATCAACCAACTTT+GGG 0.358321 2.3:+19117986 None:intergenic
GCAAATAAAGGTGCCTTCAT+TGG 0.359777 2.3:+19118225 None:intergenic
TCTAATACGGAAAGTACATT+TGG 0.368821 2.3:+19118177 None:intergenic
ATTGGGATTACCATCATTGC+TGG 0.374631 2.3:+19119032 None:intergenic
AAGGTGCATTTGGTTCTATA+TGG 0.376862 2.3:-19118143 MS.gene58361:CDS
AGAATTAACAATGTTACTTT+CGG 0.378886 2.3:-19117492 MS.gene58361:CDS
ACAAGTATTCTCTGTGTGTC+AGG 0.378962 2.3:+19117440 None:intergenic
ATGAAAGCAACATTCACATT+TGG 0.387868 2.3:+19118090 None:intergenic
CTAGAATACATAGCTGGATA+TGG 0.396785 2.3:+19119080 None:intergenic
ACACCTTGATCAACCAACTT+TGG 0.403764 2.3:+19117985 None:intergenic
TTGTAGGTTCATTAAACATA+AGG 0.405748 2.3:+19117416 None:intergenic
TGATCATCCCACATGATGAT+AGG 0.413305 2.3:+19117871 None:intergenic
GTACCATGTGATCATCTATT+GGG 0.414603 2.3:+19119015 None:intergenic
GATACTGCTATTATGTTTGA+AGG 0.421904 2.3:-19118972 MS.gene58361:CDS
GCTGAAGAGAAAGGTGCATT+TGG 0.425574 2.3:-19118153 MS.gene58361:CDS
TTTCTCTTCAGCTTCTAATA+CGG 0.429071 2.3:+19118164 None:intergenic
TGTTACTTTCGGATTTGCTA+TGG 0.443052 2.3:-19117481 MS.gene58361:CDS
AGAAAGGAACTCTAAGATAC+TGG 0.447947 2.3:-19118377 MS.gene58361:CDS
GCCCCAAAGTTGGTTGATCA+AGG 0.457467 2.3:-19117988 MS.gene58361:CDS
ATTAACTTACCATCACCAAT+TGG 0.463704 2.3:+19117847 None:intergenic
CATACTTGATCCAGCAATGA+TGG 0.467941 2.3:-19119042 MS.gene58361:CDS
TCTTGAACTTGCCCCAAAGT+TGG 0.471833 2.3:-19117998 MS.gene58361:CDS
TGCTTTCATAACTCAAGAAA+AGG 0.478668 2.3:-19118076 MS.gene58361:CDS
CTCAAGACACCTCTATGAGT+TGG 0.480888 2.3:-19118514 MS.gene58361:intron
TATGTTATTACAGGTAAGGT+TGG 0.487438 2.3:-19117515 MS.gene58361:intron
TACTGGTTAAGTGCAGGTCC+TGG 0.488263 2.3:-19118360 MS.gene58361:CDS
CTATGGGATGATATGGTAGC+TGG 0.500347 2.3:-19117464 MS.gene58361:CDS
TCTATATGGATTGATGAGGT+TGG 0.504339 2.3:-19118129 MS.gene58361:CDS
GCTTCATCAAACATGGAGTT+CGG 0.504869 2.3:-19119114 MS.gene58361:CDS
GTTACTTTCGGATTTGCTAT+GGG 0.509505 2.3:-19117480 MS.gene58361:CDS
CTGTCTTGCCTATCATCATG+TGG 0.512259 2.3:-19117879 MS.gene58361:CDS
TACTTCCAGTGTACCAATGA+AGG 0.515569 2.3:-19118238 MS.gene58361:CDS
ACTGAGACCACTGCAACCTC+TGG 0.521559 2.3:-19119911 MS.gene58361:intron
GAGGTTGCAGTGGTCTCAGT+AGG 0.525496 2.3:+19119914 None:intergenic
CACATGATGATAGGCAAGAC+AGG 0.530752 2.3:+19117880 None:intergenic
CGTGTTCTCTTCATCATCTG+AGG 0.533298 2.3:-19119693 MS.gene58361:intron
GATTTCTCTCAGTGCAAAGA+AGG 0.541297 2.3:-19118273 MS.gene58361:CDS
GATGACAGTAAGAAATCTCC+AGG 0.544571 2.3:+19118342 None:intergenic
TTGAGGCTGATCTTAAGAAA+CGG 0.550222 2.3:+19118478 None:intergenic
ATACTGCTATTATGTTTGAA+GGG 0.551151 2.3:-19118971 MS.gene58361:intron
GCGGTATCAAAATTGAAGAA+AGG 0.557986 2.3:-19118393 MS.gene58361:CDS
CTAAGATACTGGTTAAGTGC+AGG 0.560722 2.3:-19118366 MS.gene58361:CDS
ATGACTACTGCGTAGAATGC+AGG 0.561557 2.3:+19118303 None:intergenic
AGGTTGCAGTGGTCTCAGTA+GGG 0.572433 2.3:+19119915 None:intergenic
TATACACTAGAATACATAGC+TGG 0.574410 2.3:+19119074 None:intergenic
AGGTGCCTTCATTGGTACAC+TGG 0.574750 2.3:+19118233 None:intergenic
GCTGTTGAAATGATGTATGT+AGG 0.580482 2.3:-19117913 MS.gene58361:CDS
ATGTGGGATGATCAACCAAT+TGG 0.582385 2.3:-19117862 MS.gene58361:CDS
CACATGGTACATAGAGGCCA+TGG 0.583140 2.3:-19119002 MS.gene58361:CDS
ACCTTGATCAACCAACTTTG+GGG 0.583923 2.3:+19117987 None:intergenic
CAGCATTCTAATACAACTAA+CGG 0.586750 2.3:-19118415 MS.gene58361:CDS
GTATTAGAAGCTGAAGAGAA+AGG 0.586831 2.3:-19118162 MS.gene58361:CDS
ACTGCGTAGAATGCAGGTGT+TGG 0.589080 2.3:+19118309 None:intergenic
TAGAAAAGCTTCATCAAACA+TGG 0.598481 2.3:-19119121 MS.gene58361:CDS
GGTGAACATCCAACTCATAG+AGG 0.601894 2.3:+19118505 None:intergenic
TGTCTTGCCTATCATCATGT+GGG 0.602668 2.3:-19117878 MS.gene58361:CDS
GATGATCACATGGTACATAG+AGG 0.611347 2.3:-19119008 MS.gene58361:CDS
CAAGTATTCTCTGTGTGTCA+GGG 0.611968 2.3:+19117441 None:intergenic
TAGCAGTATCAAACACGCCA+TGG 0.630664 2.3:+19118985 None:intergenic
TGGTTCTATATGGATTGATG+AGG 0.634951 2.3:-19118133 MS.gene58361:CDS
GAGGTTGGTTATATTGCTGA+AGG 0.635904 2.3:-19118114 MS.gene58361:CDS
TCATCAAACATGGAGTTCGG+TGG 0.644411 2.3:-19119111 MS.gene58361:CDS
CAACTCACCAGAGGTTGCAG+TGG 0.666043 2.3:+19119904 None:intergenic
GATGATCAACCAATTGGTGA+TGG 0.668433 2.3:-19117856 MS.gene58361:intron
CTGATCTTAAGAAACGGTCA+AGG 0.670298 2.3:+19118484 None:intergenic
AATCCCAATAGATGATCACA+TGG 0.675252 2.3:-19119018 MS.gene58361:CDS
ATGTATTCTAGTGTATATGG+AGG 0.687618 2.3:-19119068 MS.gene58361:CDS
CATTCTAATACAACTAACGG+CGG 0.748431 2.3:-19118412 MS.gene58361:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTCTATCATTATTATAAGA+TGG + chr2.3:19117714-19117733 None:intergenic 15.0%
!! TTAAAGTTTCAAATTAGAAT+AGG + chr2.3:19117494-19117513 None:intergenic 15.0%
!!! ATTCTAATTTGAAACTTTAA+TGG - chr2.3:19117494-19117513 MS.gene58361:CDS 15.0%
!! ACTAAAAATTATTCCAGTTA+GGG + chr2.3:19118522-19118541 None:intergenic 20.0%
!! GAGTTAAAAAAATGCATTAT+TGG - chr2.3:19118757-19118776 MS.gene58361:intron 20.0%
!! TAAGTAAAAAATAATTGGGA+CGG + chr2.3:19119714-19119733 None:intergenic 20.0%
!! TATAGAATGTTATCGAAAAA+AGG + chr2.3:19119311-19119330 None:intergenic 20.0%
!! TTTATTAAATCAAAAGTGGT+TGG - chr2.3:19118438-19118457 MS.gene58361:CDS 20.0%
!!! AAGCTTTATTAAATCAAAAG+TGG - chr2.3:19118434-19118453 MS.gene58361:CDS 20.0%
!!! AGAATTAACAATGTTACTTT+CGG - chr2.3:19119858-19119877 MS.gene58361:intron 20.0%
!!! TGTTCTTATTGTATATGTTT+TGG - chr2.3:19117572-19117591 MS.gene58361:intron 20.0%
!!! TTTTTCATTGTTGCAAATAA+AGG + chr2.3:19119140-19119159 None:intergenic 20.0%
!!! TTTTTCGATAACATTCTATA+TGG - chr2.3:19119311-19119330 MS.gene58361:intron 20.0%
! ATAAGATTCAATTCACGATT+CGG - chr2.3:19119777-19119796 MS.gene58361:intron 25.0%
! ATACTGCTATTATGTTTGAA+GGG - chr2.3:19118379-19118398 MS.gene58361:CDS 25.0%
! GAATAAGAATTATGTTGCAT+CGG - chr2.3:19117949-19117968 MS.gene58361:CDS 25.0%
! GACTAAAAATTATTCCAGTT+AGG + chr2.3:19118523-19118542 None:intergenic 25.0%
! TATGACACTTAACACTAAAA+CGG + chr2.3:19118095-19118114 None:intergenic 25.0%
! TTAAAGTTTGCAAGTTTCAT+TGG - chr2.3:19118187-19118206 MS.gene58361:CDS 25.0%
! TTGATTGTCTATGTTATTAC+AGG - chr2.3:19119826-19119845 MS.gene58361:intron 25.0%
!! AAGTAGTTAAGCTTTAGTTA+AGG - chr2.3:19118465-19118484 MS.gene58361:CDS 25.0%
!! GCTAAATTTCTTTTCTTTCT+TGG - chr2.3:19117594-19117613 MS.gene58361:intron 25.0%
!! TGCTTTACTAGTTCATATTT+TGG - chr2.3:19117520-19117539 MS.gene58361:intron 25.0%
!! TTCATATCGATTAAGCTTAA+AGG + chr2.3:19119578-19119597 None:intergenic 25.0%
AACTAAAGCTTAACTACTTC+AGG + chr2.3:19118464-19118483 None:intergenic 30.0%
AACTACTAAAAATCTGACTG+TGG - chr2.3:19119400-19119419 MS.gene58361:intron 30.0%
AATAGGATCACAAAAACTGA+AGG + chr2.3:19117477-19117496 None:intergenic 30.0%
ATGAAAGCAACATTCACATT+TGG + chr2.3:19119263-19119282 None:intergenic 30.0%
ATGGTACTACAAAAAAGTGA+AGG + chr2.3:19117695-19117714 None:intergenic 30.0%
ATGTATTCTAGTGTATATGG+AGG - chr2.3:19118282-19118301 MS.gene58361:CDS 30.0%
ATTAACTTACCATCACCAAT+TGG + chr2.3:19119506-19119525 None:intergenic 30.0%
ATTCAGTGCTTCAAAAGATA+AGG - chr2.3:19118114-19118133 MS.gene58361:CDS 30.0%
CAAACAAAGCAAGAATAATC+TGG + chr2.3:19118573-19118592 None:intergenic 30.0%
CAGCATTCTAATACAACTAA+CGG - chr2.3:19118935-19118954 MS.gene58361:intron 30.0%
GAATAAGAACTATGTAGCAT+CGG - chr2.3:19117774-19117793 MS.gene58361:intron 30.0%
GATACTGCTATTATGTTTGA+AGG - chr2.3:19118378-19118397 MS.gene58361:CDS 30.0%
GCTATGTATTCTAGTGTATA+TGG - chr2.3:19118279-19118298 MS.gene58361:CDS 30.0%
GTTTGGATAAAAGTTACGAA+TGG + chr2.3:19118694-19118713 None:intergenic 30.0%
TACATAGTTCTTATTCCACT+AGG + chr2.3:19117770-19117789 None:intergenic 30.0%
TAGAAAAGCTTCATCAAACA+TGG - chr2.3:19118229-19118248 MS.gene58361:CDS 30.0%
TAGTTAAGGTTGAATCACTT+GGG - chr2.3:19118479-19118498 MS.gene58361:CDS 30.0%
TATACACTAGAATACATAGC+TGG + chr2.3:19118279-19118298 None:intergenic 30.0%
TATGTTATTACAGGTAAGGT+TGG - chr2.3:19119835-19119854 MS.gene58361:intron 30.0%
TCGGTAATGATTTGAGAAAA+TGG + chr2.3:19118059-19118078 None:intergenic 30.0%
TGCTTTCATAACTCAAGAAA+AGG - chr2.3:19119274-19119293 MS.gene58361:intron 30.0%
TGTCTATGTTATTACAGGTA+AGG - chr2.3:19119831-19119850 MS.gene58361:intron 30.0%
TGTGTATATCTATCCTTGTT+TGG - chr2.3:19119539-19119558 MS.gene58361:intron 30.0%
TTAACTCTACAGTTCCTATA+GGG + chr2.3:19118744-19118763 None:intergenic 30.0%
TTAGTTAAGGTTGAATCACT+TGG - chr2.3:19118478-19118497 MS.gene58361:CDS 30.0%
TTTAACTCTACAGTTCCTAT+AGG + chr2.3:19118745-19118764 None:intergenic 30.0%
TTTCTCTTCAGCTTCTAATA+CGG + chr2.3:19119189-19119208 None:intergenic 30.0%
! CAGATTATTCTTGCTTTGTT+TGG - chr2.3:19118571-19118590 MS.gene58361:intron 30.0%
! TCTAATACGGAAAGTACATT+TGG + chr2.3:19119176-19119195 None:intergenic 30.0%
! TTCGTAACTTTTATCCAAAC+AGG - chr2.3:19118694-19118713 MS.gene58361:intron 30.0%
!! AATTGGTGATGGTAAGTTAA+TGG - chr2.3:19119505-19119524 MS.gene58361:intron 30.0%
!! CTTCATTTTGAAAATGTCTC+TGG - chr2.3:19117799-19117818 MS.gene58361:intron 30.0%
!! TATTCTTGCTTTGTTTGGTT+TGG - chr2.3:19118576-19118595 MS.gene58361:intron 30.0%
AAGTCAGCTATATGTATCGA+AGG + chr2.3:19117745-19117764 None:intergenic 35.0%
AATCCCAATAGATGATCACA+TGG - chr2.3:19118332-19118351 MS.gene58361:CDS 35.0%
AGTTAAGGTTGAATCACTTG+GGG - chr2.3:19118480-19118499 MS.gene58361:CDS 35.0%
CATAAATCATAGTGCCTGTT+TGG + chr2.3:19118711-19118730 None:intergenic 35.0%
CATTCTAATACAACTAACGG+CGG - chr2.3:19118938-19118957 MS.gene58361:intron 35.0%
CTAGAATACATAGCTGGATA+TGG + chr2.3:19118273-19118292 None:intergenic 35.0%
GATTTCTTACTGTCATCTTC+AGG - chr2.3:19119014-19119033 MS.gene58361:CDS 35.0%
GCGGTATCAAAATTGAAGAA+AGG - chr2.3:19118957-19118976 MS.gene58361:intron 35.0%
GCTGTTGAAATGATGTATGT+AGG - chr2.3:19119437-19119456 MS.gene58361:intron 35.0%
GTACCATGTGATCATCTATT+GGG + chr2.3:19118338-19118357 None:intergenic 35.0%
GTATTAGAAGCTGAAGAGAA+AGG - chr2.3:19119188-19119207 MS.gene58361:intron 35.0%
TAACTCTACAGTTCCTATAG+GGG + chr2.3:19118743-19118762 None:intergenic 35.0%
TATATGGTTGCACTGCTAAA+AGG - chr2.3:19119327-19119346 MS.gene58361:intron 35.0%
TGTACCATGTGATCATCTAT+TGG + chr2.3:19118339-19118358 None:intergenic 35.0%
TTAATGCTTCATGCCAAACA+AGG + chr2.3:19119555-19119574 None:intergenic 35.0%
TTGAGGCTGATCTTAAGAAA+CGG + chr2.3:19118875-19118894 None:intergenic 35.0%
! ATATAGCTGACTTTACCTAG+TGG - chr2.3:19117752-19117771 MS.gene58361:intron 35.0%
! CAATTCACGATTCGGAAAAT+AGG - chr2.3:19119785-19119804 MS.gene58361:intron 35.0%
! TCTATATGGATTGATGAGGT+TGG - chr2.3:19119221-19119240 MS.gene58361:intron 35.0%
! TGGTTCTATATGGATTGATG+AGG - chr2.3:19119217-19119236 MS.gene58361:intron 35.0%
!! AAGGTGCATTTGGTTCTATA+TGG - chr2.3:19119207-19119226 MS.gene58361:intron 35.0%
!! AGAAAGGAACTCTAAGATAC+TGG - chr2.3:19118973-19118992 MS.gene58361:CDS 35.0%
!! GTTACTTTCGGATTTGCTAT+GGG - chr2.3:19119870-19119889 MS.gene58361:intron 35.0%
!! TGTTACTTTCGGATTTGCTA+TGG - chr2.3:19119869-19119888 MS.gene58361:intron 35.0%
AAACGGTAACACGTAGACAT+CGG + chr2.3:19118078-19118097 None:intergenic 40.0%
ACAAGTATTCTCTGTGTGTC+AGG + chr2.3:19119913-19119932 None:intergenic 40.0%
ACACCTTGATCAACCAACTT+TGG + chr2.3:19119368-19119387 None:intergenic 40.0%
ACAGTTCCTATAGGGGAAAA+GGG + chr2.3:19118736-19118755 None:intergenic 40.0%
ACCTTGATCAACCAACTTTG+GGG + chr2.3:19119366-19119385 None:intergenic 40.0%
ATGTGGGATGATCAACCAAT+TGG - chr2.3:19119488-19119507 MS.gene58361:intron 40.0%
ATTGGGATTACCATCATTGC+TGG + chr2.3:19118321-19118340 None:intergenic 40.0%
CAAGTATTCTCTGTGTGTCA+GGG + chr2.3:19119912-19119931 None:intergenic 40.0%
CACCTTGATCAACCAACTTT+GGG + chr2.3:19119367-19119386 None:intergenic 40.0%
CATACTTGATCCAGCAATGA+TGG - chr2.3:19118308-19118327 MS.gene58361:CDS 40.0%
CTGATCTTAAGAAACGGTCA+AGG + chr2.3:19118869-19118888 None:intergenic 40.0%
GATGACAGTAAGAAATCTCC+AGG + chr2.3:19119011-19119030 None:intergenic 40.0%
GATGATCAACCAATTGGTGA+TGG - chr2.3:19119494-19119513 MS.gene58361:intron 40.0%
GATGATCACATGGTACATAG+AGG - chr2.3:19118342-19118361 MS.gene58361:CDS 40.0%
GATTTCTCTCAGTGCAAAGA+AGG - chr2.3:19119077-19119096 MS.gene58361:CDS 40.0%
GCTTCATCAAACATGGAGTT+CGG - chr2.3:19118236-19118255 MS.gene58361:CDS 40.0%
TACAGTTCCTATAGGGGAAA+AGG + chr2.3:19118737-19118756 None:intergenic 40.0%
TACTTCCAGTGTACCAATGA+AGG - chr2.3:19119112-19119131 MS.gene58361:CDS 40.0%
TCTCAGCTTCAAGAAAGTCA+CGG + chr2.3:19118641-19118660 None:intergenic 40.0%
TGATCATCCCACATGATGAT+AGG + chr2.3:19119482-19119501 None:intergenic 40.0%
TGTCGTGTCAGTGTCAAATA+AGG + chr2.3:19117839-19117858 None:intergenic 40.0%
TGTCTTGCCTATCATCATGT+GGG - chr2.3:19119472-19119491 MS.gene58361:intron 40.0%
TTCCAGTTAGGGATTGAACT+CGG + chr2.3:19118511-19118530 None:intergenic 40.0%
! ATGTAGCTGACTTCACATAG+TGG - chr2.3:19117927-19117946 MS.gene58361:CDS 40.0%
! CTAAGATACTGGTTAAGTGC+AGG - chr2.3:19118984-19119003 MS.gene58361:CDS 40.0%
! GAGGTTGGTTATATTGCTGA+AGG - chr2.3:19119236-19119255 MS.gene58361:intron 40.0%
!! CGAGGATATCTTTGCTTTTG+AGG + chr2.3:19118892-19118911 None:intergenic 40.0%
!! GCAAATAAAGGTGCCTTCAT+TGG + chr2.3:19119128-19119147 None:intergenic 40.0%
!! GGATTTGCTATGGGATGATA+TGG - chr2.3:19119879-19119898 MS.gene58361:intron 40.0%
!! TCTTGCTTTGTTTGGTTTGG+CGG - chr2.3:19118579-19118598 MS.gene58361:intron 40.0%
!!! CTTCATTTTGGAAGTGTCTC+TGG - chr2.3:19117974-19117993 MS.gene58361:CDS 40.0%
AGTCACGGCAAATCATGCAT+TGG + chr2.3:19118626-19118645 None:intergenic 45.0%
ATGACTACTGCGTAGAATGC+AGG + chr2.3:19119050-19119069 None:intergenic 45.0%
ATGCATTGGGAAGCGAGAAT+TGG + chr2.3:19118612-19118631 None:intergenic 45.0%
CACATGATGATAGGCAAGAC+AGG + chr2.3:19119473-19119492 None:intergenic 45.0%
CGTGTTCTCTTCATCATCTG+AGG - chr2.3:19117657-19117676 MS.gene58361:intron 45.0%
CTATGGGATGATATGGTAGC+TGG - chr2.3:19119886-19119905 MS.gene58361:intron 45.0%
CTCAAGACACCTCTATGAGT+TGG - chr2.3:19118836-19118855 MS.gene58361:intron 45.0%
CTGTCTTGCCTATCATCATG+TGG - chr2.3:19119471-19119490 MS.gene58361:intron 45.0%
GGTGAACATCCAACTCATAG+AGG + chr2.3:19118848-19118867 None:intergenic 45.0%
GTCACGGCAAATCATGCATT+GGG + chr2.3:19118625-19118644 None:intergenic 45.0%
GTTACGAATGGCCAAAAGCA+CGG + chr2.3:19118682-19118701 None:intergenic 45.0%
TAATCTGGACTTCGACTGTG+TGG + chr2.3:19118558-19118577 None:intergenic 45.0%
TAGCAGTATCAAACACGCCA+TGG + chr2.3:19118368-19118387 None:intergenic 45.0%
TCATCAAACATGGAGTTCGG+TGG - chr2.3:19118239-19118258 MS.gene58361:CDS 45.0%
TCCAGTTAGGGATTGAACTC+GGG + chr2.3:19118510-19118529 None:intergenic 45.0%
TCTTGAACTTGCCCCAAAGT+TGG - chr2.3:19119352-19119371 MS.gene58361:intron 45.0%
TGCATTGGGAAGCGAGAATT+GGG + chr2.3:19118611-19118630 None:intergenic 45.0%
! AGTTAGACTTGCCGTGCTTT+TGG - chr2.3:19118668-19118687 MS.gene58361:intron 45.0%
! CGAAGAGTTGATCGCGAAAA+AGG + chr2.3:19118915-19118934 None:intergenic 45.0%
! GCTGAAGAGAAAGGTGCATT+TGG - chr2.3:19119197-19119216 MS.gene58361:intron 45.0%
! TATGTGCCCTTTTCCCCTAT+AGG - chr2.3:19118727-19118746 MS.gene58361:intron 45.0%
!! GTTGCATCGGCACTTCATTT+TGG - chr2.3:19117962-19117981 MS.gene58361:CDS 45.0%
!!! ATTTTTAAGTAAAAAATAAT+TGG + chr2.3:19119719-19119738 None:intergenic 5.0%
!!! TTTTTAAGTAAAAAATAATT+GGG + chr2.3:19119718-19119737 None:intergenic 5.0%
ACCCGAGTTCAATCCCTAAC+TGG - chr2.3:19118506-19118525 MS.gene58361:CDS 50.0%
ACTGCAACCTCTGGTGAGTT+GGG - chr2.3:19117448-19117467 MS.gene58361:CDS 50.0%
ACTGCGTAGAATGCAGGTGT+TGG + chr2.3:19119044-19119063 None:intergenic 50.0%
AGGTGCCTTCATTGGTACAC+TGG + chr2.3:19119120-19119139 None:intergenic 50.0%
AGGTTGCAGTGGTCTCAGTA+GGG + chr2.3:19117438-19117457 None:intergenic 50.0%
AGTTGATCGCGAAAAAGGCG+AGG + chr2.3:19118910-19118929 None:intergenic 50.0%
CACATGGTACATAGAGGCCA+TGG - chr2.3:19118348-19118367 MS.gene58361:CDS 50.0%
TGGACTTCGACTGTGTGGTA+AGG + chr2.3:19118553-19118572 None:intergenic 50.0%
! GCCCCAAAGTTGGTTGATCA+AGG - chr2.3:19119362-19119381 MS.gene58361:intron 50.0%
! TACTGGTTAAGTGCAGGTCC+TGG - chr2.3:19118990-19119009 MS.gene58361:CDS 50.0%
!! TGCTTTGTTTGGTTTGGCGG+TGG - chr2.3:19118582-19118601 MS.gene58361:intron 50.0%
AAGGCAACCCAACTCACCAG+AGG + chr2.3:19117458-19117477 None:intergenic 55.0%
ACTGAGACCACTGCAACCTC+TGG - chr2.3:19117439-19117458 MS.gene58361:CDS 55.0%
CAACTCACCAGAGGTTGCAG+TGG + chr2.3:19117449-19117468 None:intergenic 55.0%
CACTGCAACCTCTGGTGAGT+TGG - chr2.3:19117447-19117466 MS.gene58361:CDS 55.0%
CTGACACGACACTACGCATG+TGG - chr2.3:19117848-19117867 MS.gene58361:intron 55.0%
GAGGTTGCAGTGGTCTCAGT+AGG + chr2.3:19117439-19117458 None:intergenic 55.0%


Chromosome Type Strat End Strand Name
chr2.3 gene 19117427 19119945 19117427 ID=MS.gene58361
chr2.3 mRNA 19117427 19119945 19117427 ID=MS.gene58361.t1;Parent=MS.gene58361
chr2.3 exon 19119912 19119945 19119912 ID=MS.gene58361.t1.exon1;Parent=MS.gene58361.t1
chr2.3 CDS 19119912 19119945 19119912 ID=cds.MS.gene58361.t1;Parent=MS.gene58361.t1
chr2.3 exon 19119694 19119746 19119694 ID=MS.gene58361.t1.exon2;Parent=MS.gene58361.t1
chr2.3 CDS 19119694 19119746 19119694 ID=cds.MS.gene58361.t1;Parent=MS.gene58361.t1
chr2.3 exon 19118972 19119147 19118972 ID=MS.gene58361.t1.exon3;Parent=MS.gene58361.t1
chr2.3 CDS 19118972 19119147 19118972 ID=cds.MS.gene58361.t1;Parent=MS.gene58361.t1
chr2.3 exon 19117857 19118530 19117857 ID=MS.gene58361.t1.exon4;Parent=MS.gene58361.t1
chr2.3 CDS 19117857 19118530 19117857 ID=cds.MS.gene58361.t1;Parent=MS.gene58361.t1
chr2.3 exon 19117427 19117524 19117427 ID=MS.gene58361.t1.exon5;Parent=MS.gene58361.t1
chr2.3 CDS 19117427 19117524 19117427 ID=cds.MS.gene58361.t1;Parent=MS.gene58361.t1
Gene Sequence

>MS.gene58361

ATGGGGAACCCTACTGAGACCACTGCAACCTCTGGTGAGTTGGGTTGCCTTCAGTTTTTGTGATCCTATTCTAATTTGAAACTTTAATGGTCTTGCTTTACTAGTTCATATTTTGGTTGAAACTTTAGTGATTATGAATGTATAATGTTCTTATTGTATATGTTTTGGCTAAATTTCTTTTCTTTCTTGGTGTGTATAGAGATTGAAATTGATAATGATTTTAAAGTTCACGTGTTCTCTTCATCATCTGAGGTGAGATTTTCAACCTTCACTTTTTTGTAGTACCATCTTATAATAATGATAGAATATTAGTGTCCTTCGATACATATAGCTGACTTTACCTAGTGGAATAAGAACTATGTAGCATCGGCACTTCATTTTGAAAATGTCTCTGGTGTCTGACATATGTCCTTATTTGACACTGACACGACACTACGCATGTGGTTACATTAAATCACTTCTATTTTCACAAATCATTACATGTGTCGTTCGTTCAATACATGTAGCTGACTTCACATAGTGGAATAAGAATTATGTTGCATCGGCACTTCATTTTGGAAGTGTCTCTGGTGTCTGACATATGTCTTTATTTGACACGACACTACATATGTGATTACATTCAATCACTTCCATTTTCTCAAATCATTACCGATGTCTACGTGTTACCGTTTTAGTGTTAAGTGTCATATTCAGTGCTTCAAAAGATAAGGCGTGTTGTTTTTGTAGTTATATTATTTGATTAACTACTACAATCAGTAAATTAAAGTTTGCAAGTTTCATTGGCTTTACATTCTTCAGTTACTAGAAAAGCTTCATCAAACATGGAGTTCGGTGGAGAAACAACCATATCCAGCTATGTATTCTAGTGTATATGGAGGTATCATACTTGATCCAGCAATGATGGTAATCCCAATAGATGATCACATGGTACATAGAGGCCATGGCGTGTTTGATACTGCTATTATGTTTGAAGGGTAATACTAATTTTTGTTTTCTTTCTTGTAACAAAGCTTTATTAAATCAAAAGTGGTTGGCCTGAAGTAGTTAAGCTTTAGTTAAGGTTGAATCACTTGGGGAGCACCCGAGTTCAATCCCTAACTGGAATAATTTTTAGTCAGACTTTCCTTACCACACAGTCGAAGTCCAGATTATTCTTGCTTTGTTTGGTTTGGCGGTGGAAACCCAATTCTCGCTTCCCAATGCATGATTTGCCGTGACTTTCTTGAAGCTGAGAATTGTAGAGTTAGACTTGCCGTGCTTTTGGCCATTCGTAACTTTTATCCAAACAGGCACTATGATTTATGTGCCCTTTTCCCCTATAGGAACTGTAGAGTTAAAAAAATGCATTATTGGTTTTACTTTGAATGTTCATATTTTTCTCTTATCTTGATATTTATGTTGTTTGTTTTCTCAAGACACCTCTATGAGTTGGATGTTCACCTTGACCGTTTCTTAAGATCAGCCTCAAAAGCAAAGATATCCTCGCCTTTTTCGCGATCAACTCTTCGCAGCATTCTAATACAACTAACGGCGGTATCAAAATTGAAGAAAGGAACTCTAAGATACTGGTTAAGTGCAGGTCCTGGAGATTTCTTACTGTCATCTTCAGGATGTCCAACACCTGCATTCTACGCAGTAGTCATTGATCATGATTTCTCTCAGTGCAAAGAAGGTGTCAAAGTGATTACTTCCAGTGTACCAATGAAGGCACCTTTATTTGCAACAATGAAAAATGTGAACTATCTTCCAAATGTACTTTCCGTATTAGAAGCTGAAGAGAAAGGTGCATTTGGTTCTATATGGATTGATGAGGTTGGTTATATTGCTGAAGGACCAAATGTGAATGTTGCTTTCATAACTCAAGAAAAGGAACTTGTTATGCCTTTTTTCGATAACATTCTATATGGTTGCACTGCTAAAAGGCTTCTTGAACTTGCCCCAAAGTTGGTTGATCAAGGTGTTCTAAAAAGTGTAACTACTAAAAATCTGACTGTGGATGAAGCTAGAGATGCTGTTGAAATGATGTATGTAGGAAGCACACTTCCTGTCTTGCCTATCATCATGTGGGATGATCAACCAATTGGTGATGGTAAGTTAATGGCAGAAATTATCTGTGTATATCTATCCTTGTTTGGCATGAAGCATTAACCTTTAAGCTTAATCGATATGAATCTCTAATATTGTTTATTTTCAATACGAGTCTCGTCTTGAATCTAGTCTCTTTATGTTGAATCTTGATTCATTCTGATGACGTTAGTAGATGAAATATGAACTTATAATTTTTCCGTCCCAATTATTTTTTACTTAAAAATTGTCATATTTCTATTAGTAATGTATCTTACGATTCATAATAAGATTCAATTCACGATTCGGAAAATAGGTCTTCTGATTCACAAATCTTGATTGTCTATGTTATTACAGGTAAGGTTGGAGAATTAACAATGTTACTTTCGGATTTGCTATGGGATGATATGGTAGCTGGCCCTGACACACAGAGAATACTTGTTCCTTATGTTTAA
Protein sequence

>MS.gene58361.t1

MGNPTETTATSEIEIDNDFKVHVFSSSSELLEKLHQTWSSVEKQPYPAMYSSVYGGIILDPAMMVIPIDDHMVHRGHGVFDTAIMFEGHLYELDVHLDRFLRSASKAKISSPFSRSTLRSILIQLTAVSKLKKGTLRYWLSAGPGDFLLSSSGCPTPAFYAVVIDHDFSQCKEGVKVITSSVPMKAPLFATMKNVNYLPNVLSVLEAEEKGAFGSIWIDEVGYIAEGPNVNVAFITQEKELVMPFFDNILYGCTAKRLLELAPKLVDQGVLKSVTTKNLTVDEARDAVEMMYVGSTLPVLPIIMWDDQPIGDGKVGELTMLLSDLLWDDMVAGPDTQRILVPYV