Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene059770.t1 | XP_013464651.1 | 98 | 344 | 7 | 0 | 1 | 344 | 1 | 344 | 1.80E-191 | 678.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene059770.t1 | Q8L493 | 59.8 | 301 | 120 | 1 | 44 | 343 | 73 | 373 | 2.2e-100 | 367.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene059770.t1 | I3SQ86 | 98.0 | 344 | 7 | 0 | 1 | 344 | 1 | 344 | 1.3e-191 | 678.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene056692 | MS.gene059770 | -0.803832 | 2.89E-49 | -1.69E-46 |
| MS.gene059677 | MS.gene059770 | -0.802188 | 6.31E-49 | -1.69E-46 |
| MS.gene059770 | MS.gene060694 | 0.971977 | 5.08E-134 | -1.69E-46 |
| MS.gene059770 | MS.gene062121 | 0.803216 | 3.88E-49 | -1.69E-46 |
| MS.gene059770 | MS.gene09661 | -0.807578 | 4.72E-50 | -1.69E-46 |
| MS.gene059770 | MS.gene20602 | -0.823261 | 1.52E-53 | -1.69E-46 |
| MS.gene059770 | MS.gene21474 | -0.801579 | 8.42E-49 | -1.69E-46 |
| MS.gene059770 | MS.gene22569 | -0.804138 | 2.49E-49 | -1.69E-46 |
| MS.gene059770 | MS.gene35889 | 0.83612 | 1.13E-56 | -1.69E-46 |
| MS.gene059770 | MS.gene37999 | -0.821656 | 3.60E-53 | -1.69E-46 |
| MS.gene059770 | MS.gene38250 | -0.835324 | 1.79E-56 | -1.69E-46 |
| MS.gene059770 | MS.gene38252 | -0.834811 | 2.42E-56 | -1.69E-46 |
| MS.gene059770 | MS.gene38348 | -0.829442 | 5.14E-55 | -1.69E-46 |
| MS.gene059770 | MS.gene42631 | -0.800664 | 1.30E-48 | -1.69E-46 |
| MS.gene059770 | MS.gene42678 | -0.806558 | 7.76E-50 | -1.69E-46 |
| MS.gene059770 | MS.gene45693 | -0.811959 | 5.39E-51 | -1.69E-46 |
| MS.gene059770 | MS.gene49126 | -0.811981 | 5.33E-51 | -1.69E-46 |
| MS.gene059770 | MS.gene51168 | -0.804094 | 2.55E-49 | -1.69E-46 |
| MS.gene059770 | MS.gene54709 | -0.817067 | 4.00E-52 | -1.69E-46 |
| MS.gene059770 | MS.gene58361 | 0.971068 | 1.38E-132 | -1.69E-46 |
| MS.gene059770 | MS.gene60712 | -0.810311 | 1.23E-50 | -1.69E-46 |
| MS.gene059770 | MS.gene68071 | -0.801129 | 1.04E-48 | -1.69E-46 |
| MS.gene059770 | MS.gene71876 | 0.963713 | 2.01E-122 | -1.69E-46 |
| MS.gene059770 | MS.gene76405 | 0.805452 | 1.33E-49 | -1.69E-46 |
| MS.gene059770 | MS.gene79178 | 0.806473 | 8.09E-50 | -1.69E-46 |
| MS.gene059770 | MS.gene81275 | -0.831349 | 1.76E-55 | -1.69E-46 |
| MS.gene059770 | MS.gene83941 | -0.810334 | 1.21E-50 | -1.69E-46 |
| MS.gene059770 | MS.gene88896 | -0.812871 | 3.41E-51 | -1.69E-46 |
| MS.gene059770 | MS.gene89493 | 0.811825 | 5.77E-51 | -1.69E-46 |
| MS.gene059770 | MS.gene91915 | -0.811802 | 5.83E-51 | -1.69E-46 |
| MS.gene059770 | MS.gene97861 | 0.809438 | 1.89E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene059770.t1 | MTR_2g078730 | 97.965 | 344 | 7 | 0 | 1 | 344 | 1 | 344 | 0.0 | 694 |
| MS.gene059770.t1 | MTR_1g026860 | 58.642 | 324 | 127 | 3 | 26 | 343 | 60 | 382 | 3.07e-134 | 387 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene059770.t1 | AT5G57850 | 57.994 | 319 | 130 | 2 | 26 | 343 | 58 | 373 | 3.39e-128 | 372 |
| MS.gene059770.t1 | AT5G57850 | 60.135 | 296 | 117 | 1 | 49 | 343 | 1 | 296 | 7.11e-128 | 368 |
| MS.gene059770.t1 | AT3G05190 | 23.297 | 279 | 196 | 7 | 55 | 324 | 267 | 536 | 3.65e-14 | 73.9 |
| MS.gene059770.t1 | AT3G05190 | 23.297 | 279 | 196 | 7 | 55 | 324 | 267 | 536 | 3.65e-14 | 73.9 |
| MS.gene059770.t1 | AT3G05190 | 23.297 | 279 | 196 | 7 | 55 | 324 | 267 | 536 | 3.65e-14 | 73.9 |
| MS.gene059770.t1 | AT5G27410 | 22.535 | 284 | 192 | 8 | 55 | 324 | 176 | 445 | 2.34e-12 | 68.2 |
| MS.gene059770.t1 | AT5G27410 | 22.535 | 284 | 192 | 8 | 55 | 324 | 264 | 533 | 2.86e-12 | 68.2 |
| MS.gene059770.t1 | AT5G27410 | 22.535 | 284 | 192 | 8 | 55 | 324 | 641 | 910 | 2.99e-12 | 68.2 |
Find 75 sgRNAs with CRISPR-Local
Find 155 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TATATGGTTGCACTGCTAAA+AGG | 0.283245 | 2.4:-19763738 | MS.gene059770:CDS |
| GCTATGTATTCTAGTGTATA+TGG | 0.321285 | 2.4:-19764786 | MS.gene059770:CDS |
| TGTACCATGTGATCATCTAT+TGG | 0.330668 | 2.4:+19764729 | None:intergenic |
| GATTTCTTACTGTCATCTTC+AGG | 0.332881 | 2.4:-19764051 | MS.gene059770:CDS |
| CGAAGAGTTGATCGCGAAAA+AGG | 0.334858 | 2.4:+19764153 | None:intergenic |
| GGATTTGCTATGGGATGATA+TGG | 0.343910 | 2.4:-19763186 | MS.gene059770:CDS |
| CACCTTGATCAACCAACTTT+GGG | 0.358321 | 2.4:+19763701 | None:intergenic |
| GCAAATAAAGGTGCCTTCAT+TGG | 0.359777 | 2.4:+19763940 | None:intergenic |
| TCTAATACGGAAAGTACATT+TGG | 0.368821 | 2.4:+19763892 | None:intergenic |
| ATTGGGATTACCATCATTGC+TGG | 0.374631 | 2.4:+19764747 | None:intergenic |
| AAGGTGCATTTGGTTCTATA+TGG | 0.376862 | 2.4:-19763858 | MS.gene059770:CDS |
| AGAATTAACAATGTTACTTT+CGG | 0.378886 | 2.4:-19763207 | MS.gene059770:CDS |
| ACAAGTATTCTCTGTGTGTC+AGG | 0.378962 | 2.4:+19763155 | None:intergenic |
| ATGAAAGCAACATTCACATT+TGG | 0.387868 | 2.4:+19763805 | None:intergenic |
| CTAGAATACATAGCTGGATA+TGG | 0.396785 | 2.4:+19764795 | None:intergenic |
| ACACCTTGATCAACCAACTT+TGG | 0.403764 | 2.4:+19763700 | None:intergenic |
| TTGTAGGTTCATTAAACATA+AGG | 0.405748 | 2.4:+19763131 | None:intergenic |
| TGATCATCCCACATGATGAT+AGG | 0.413305 | 2.4:+19763586 | None:intergenic |
| GTACCATGTGATCATCTATT+GGG | 0.414603 | 2.4:+19764730 | None:intergenic |
| GATACTGCTATTATGTTTGA+AGG | 0.421904 | 2.4:-19764687 | MS.gene059770:CDS |
| GCTGAAGAGAAAGGTGCATT+TGG | 0.425574 | 2.4:-19763868 | MS.gene059770:CDS |
| TTTCTCTTCAGCTTCTAATA+CGG | 0.429071 | 2.4:+19763879 | None:intergenic |
| TGTTACTTTCGGATTTGCTA+TGG | 0.443052 | 2.4:-19763196 | MS.gene059770:CDS |
| AGAAAGGAACTCTAAGATAC+TGG | 0.447947 | 2.4:-19764092 | MS.gene059770:CDS |
| GCCCCAAAGTTGGTTGATCA+AGG | 0.457467 | 2.4:-19763703 | MS.gene059770:CDS |
| ATTAACTTACCATCACCAAT+TGG | 0.463704 | 2.4:+19763562 | None:intergenic |
| CATACTTGATCCAGCAATGA+TGG | 0.467941 | 2.4:-19764757 | MS.gene059770:CDS |
| TCTTGAACTTGCCCCAAAGT+TGG | 0.471833 | 2.4:-19763713 | MS.gene059770:CDS |
| TGCTTTCATAACTCAAGAAA+AGG | 0.478668 | 2.4:-19763791 | MS.gene059770:CDS |
| CTCAAGACACCTCTATGAGT+TGG | 0.480888 | 2.4:-19764229 | MS.gene059770:intron |
| TATGTTATTACAGGTAAGGT+TGG | 0.487438 | 2.4:-19763230 | MS.gene059770:intron |
| TACTGGTTAAGTGCAGGTCC+TGG | 0.488263 | 2.4:-19764075 | MS.gene059770:CDS |
| CTATGGGATGATATGGTAGC+TGG | 0.500347 | 2.4:-19763179 | MS.gene059770:CDS |
| TCTATATGGATTGATGAGGT+TGG | 0.504339 | 2.4:-19763844 | MS.gene059770:CDS |
| GCTTCATCAAACATGGAGTT+CGG | 0.504869 | 2.4:-19764829 | MS.gene059770:CDS |
| GTTACTTTCGGATTTGCTAT+GGG | 0.509505 | 2.4:-19763195 | MS.gene059770:CDS |
| CTGTCTTGCCTATCATCATG+TGG | 0.512259 | 2.4:-19763594 | MS.gene059770:CDS |
| TACTTCCAGTGTACCAATGA+AGG | 0.515569 | 2.4:-19763953 | MS.gene059770:CDS |
| ACTGAGACCACTGCAACCTC+TGG | 0.521559 | 2.4:-19765626 | MS.gene059770:intron |
| GAGGTTGCAGTGGTCTCAGT+AGG | 0.525496 | 2.4:+19765629 | None:intergenic |
| CACATGATGATAGGCAAGAC+AGG | 0.530752 | 2.4:+19763595 | None:intergenic |
| CGTGTTCTCTTCATCATCTG+AGG | 0.533298 | 2.4:-19765408 | MS.gene059770:intron |
| GATTTCTCTCAGTGCAAAGA+AGG | 0.541297 | 2.4:-19763988 | MS.gene059770:CDS |
| GATGACAGTAAGAAATCTCC+AGG | 0.544571 | 2.4:+19764057 | None:intergenic |
| TTGAGGCTGATCTTAAGAAA+CGG | 0.550222 | 2.4:+19764193 | None:intergenic |
| ATACTGCTATTATGTTTGAA+GGG | 0.551151 | 2.4:-19764686 | MS.gene059770:intron |
| GCGGTATCAAAATTGAAGAA+AGG | 0.557986 | 2.4:-19764108 | MS.gene059770:CDS |
| CTAAGATACTGGTTAAGTGC+AGG | 0.560722 | 2.4:-19764081 | MS.gene059770:CDS |
| ATGACTACTGCGTAGAATGC+AGG | 0.561557 | 2.4:+19764018 | None:intergenic |
| AGGTTGCAGTGGTCTCAGTA+GGG | 0.572433 | 2.4:+19765630 | None:intergenic |
| TATACACTAGAATACATAGC+TGG | 0.574410 | 2.4:+19764789 | None:intergenic |
| AGGTGCCTTCATTGGTACAC+TGG | 0.574750 | 2.4:+19763948 | None:intergenic |
| GCTGTTGAAATGATGTATGT+AGG | 0.580482 | 2.4:-19763628 | MS.gene059770:CDS |
| ATGTGGGATGATCAACCAAT+TGG | 0.582385 | 2.4:-19763577 | MS.gene059770:CDS |
| CACATGGTACATAGAGGCCA+TGG | 0.583140 | 2.4:-19764717 | MS.gene059770:CDS |
| ACCTTGATCAACCAACTTTG+GGG | 0.583923 | 2.4:+19763702 | None:intergenic |
| CAGCATTCTAATACAACTAA+CGG | 0.586750 | 2.4:-19764130 | MS.gene059770:CDS |
| GTATTAGAAGCTGAAGAGAA+AGG | 0.586831 | 2.4:-19763877 | MS.gene059770:CDS |
| ACTGCGTAGAATGCAGGTGT+TGG | 0.589080 | 2.4:+19764024 | None:intergenic |
| TAGAAAAGCTTCATCAAACA+TGG | 0.598481 | 2.4:-19764836 | MS.gene059770:CDS |
| GGTGAACATCCAACTCATAG+AGG | 0.601894 | 2.4:+19764220 | None:intergenic |
| TGTCTTGCCTATCATCATGT+GGG | 0.602668 | 2.4:-19763593 | MS.gene059770:CDS |
| GATGATCACATGGTACATAG+AGG | 0.611347 | 2.4:-19764723 | MS.gene059770:CDS |
| CAAGTATTCTCTGTGTGTCA+GGG | 0.611968 | 2.4:+19763156 | None:intergenic |
| TAGCAGTATCAAACACGCCA+TGG | 0.630664 | 2.4:+19764700 | None:intergenic |
| TGGTTCTATATGGATTGATG+AGG | 0.634951 | 2.4:-19763848 | MS.gene059770:CDS |
| GAGGTTGGTTATATTGCTGA+AGG | 0.635904 | 2.4:-19763829 | MS.gene059770:CDS |
| TCATCAAACATGGAGTTCGG+TGG | 0.644411 | 2.4:-19764826 | MS.gene059770:CDS |
| CAACTCACCAGAGGTTGCAG+TGG | 0.666043 | 2.4:+19765619 | None:intergenic |
| GATGATCAACCAATTGGTGA+TGG | 0.668433 | 2.4:-19763571 | MS.gene059770:intron |
| CTGATCTTAAGAAACGGTCA+AGG | 0.670298 | 2.4:+19764199 | None:intergenic |
| AATCCCAATAGATGATCACA+TGG | 0.675252 | 2.4:-19764733 | MS.gene059770:CDS |
| CTGACTGTGGATGAAGCTAG+AGG | 0.686743 | 2.4:-19763652 | MS.gene059770:CDS |
| ATGTATTCTAGTGTATATGG+AGG | 0.687618 | 2.4:-19764783 | MS.gene059770:CDS |
| CATTCTAATACAACTAACGG+CGG | 0.748431 | 2.4:-19764127 | MS.gene059770:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTCTATCATTATTATAAGA+TGG | + | chr2.4:19763429-19763448 | None:intergenic | 15.0% |
| !! | GAGTTAAAAAAATACATTAT+TGG | - | chr2.4:19764472-19764491 | MS.gene059770:intron | 15.0% |
| !! | TTAAAGTTTCAAATTAGAAT+AGG | + | chr2.4:19763209-19763228 | None:intergenic | 15.0% |
| !!! | ATTCTAATTTGAAACTTTAA+TGG | - | chr2.4:19763209-19763228 | MS.gene059770:CDS | 15.0% |
| !! | ACTAAAAATTATTCCAGTTA+GGG | + | chr2.4:19764237-19764256 | None:intergenic | 20.0% |
| !! | TAAGTAAAAAATAATTGGGA+CGG | + | chr2.4:19765429-19765448 | None:intergenic | 20.0% |
| !! | TATAGAATGTTATCGAAAAA+AGG | + | chr2.4:19765026-19765045 | None:intergenic | 20.0% |
| !! | TTTATTAAATCAAAAGTGGT+TGG | - | chr2.4:19764153-19764172 | MS.gene059770:CDS | 20.0% |
| !!! | AAGCTTTATTAAATCAAAAG+TGG | - | chr2.4:19764149-19764168 | MS.gene059770:CDS | 20.0% |
| !!! | AGAATTAACAATGTTACTTT+CGG | - | chr2.4:19765573-19765592 | MS.gene059770:intron | 20.0% |
| !!! | TGTTCTTATTGTATATGTTT+TGG | - | chr2.4:19763287-19763306 | MS.gene059770:intron | 20.0% |
| !!! | TTTTTCATTGTTGCAAATAA+AGG | + | chr2.4:19764855-19764874 | None:intergenic | 20.0% |
| !!! | TTTTTCGATAACATTCTATA+TGG | - | chr2.4:19765026-19765045 | MS.gene059770:intron | 20.0% |
| ! | AACATAATTCTTATTCCACT+AGG | + | chr2.4:19763660-19763679 | None:intergenic | 25.0% |
| ! | ATAAGATTCAATTCACGATT+CGG | - | chr2.4:19765492-19765511 | MS.gene059770:intron | 25.0% |
| ! | ATACTGCTATTATGTTTGAA+GGG | - | chr2.4:19764094-19764113 | MS.gene059770:CDS | 25.0% |
| ! | GAATAAGAATTATGTTGCAT+CGG | - | chr2.4:19763664-19763683 | MS.gene059770:CDS | 25.0% |
| ! | GACTAAAAATTATTCCAGTT+AGG | + | chr2.4:19764238-19764257 | None:intergenic | 25.0% |
| ! | TATGACACTTAACACTAAAA+CGG | + | chr2.4:19763810-19763829 | None:intergenic | 25.0% |
| ! | TTAAAGTTTGCAAGTTTCAT+TGG | - | chr2.4:19763902-19763921 | MS.gene059770:CDS | 25.0% |
| ! | TTGATTGTCTATGTTATTAC+AGG | - | chr2.4:19765541-19765560 | MS.gene059770:intron | 25.0% |
| !! | AAGTAGTTAAGCTTTAGTTA+AGG | - | chr2.4:19764180-19764199 | MS.gene059770:CDS | 25.0% |
| !! | TGCTTTACTAGTTCATATTT+TGG | - | chr2.4:19763235-19763254 | MS.gene059770:intron | 25.0% |
| !! | TTCATATCGATTAAGCTTAA+AGG | + | chr2.4:19765293-19765312 | None:intergenic | 25.0% |
| !!! | GCTAAATTTGTTTTCTTTCT+TGG | - | chr2.4:19763309-19763328 | MS.gene059770:intron | 25.0% |
| AACTAAAGCTTAACTACTTC+AGG | + | chr2.4:19764179-19764198 | None:intergenic | 30.0% | |
| AACTACTAAAAATCTGACTG+TGG | - | chr2.4:19765115-19765134 | MS.gene059770:intron | 30.0% | |
| AATAGGATCACAAAAACTGA+AGG | + | chr2.4:19763192-19763211 | None:intergenic | 30.0% | |
| ATGAAAGCAACATTCACATT+TGG | + | chr2.4:19764978-19764997 | None:intergenic | 30.0% | |
| ATGGTACTACAAAAAAGTGA+AGG | + | chr2.4:19763410-19763429 | None:intergenic | 30.0% | |
| ATGTATTCTAGTGTATATGG+AGG | - | chr2.4:19763997-19764016 | MS.gene059770:CDS | 30.0% | |
| ATTAACTTACCATCACCAAT+TGG | + | chr2.4:19765221-19765240 | None:intergenic | 30.0% | |
| ATTCAGTGCTTCAAAAGATA+AGG | - | chr2.4:19763829-19763848 | MS.gene059770:CDS | 30.0% | |
| CAAACAAAGCAAGAATAATC+TGG | + | chr2.4:19764288-19764307 | None:intergenic | 30.0% | |
| CAGCATTCTAATACAACTAA+CGG | - | chr2.4:19764650-19764669 | MS.gene059770:intron | 30.0% | |
| GAATAAGAACTATGTAGCAT+CGG | - | chr2.4:19763489-19763508 | MS.gene059770:intron | 30.0% | |
| GATACTGCTATTATGTTTGA+AGG | - | chr2.4:19764093-19764112 | MS.gene059770:CDS | 30.0% | |
| GCTATGTATTCTAGTGTATA+TGG | - | chr2.4:19763994-19764013 | MS.gene059770:CDS | 30.0% | |
| GTTTGGATAAAAGTTACGAA+TGG | + | chr2.4:19764409-19764428 | None:intergenic | 30.0% | |
| TACATAGTTCTTATTCCACT+AGG | + | chr2.4:19763485-19763504 | None:intergenic | 30.0% | |
| TAGAAAAGCTTCATCAAACA+TGG | - | chr2.4:19763944-19763963 | MS.gene059770:CDS | 30.0% | |
| TAGTTAAGGTTGAATCACTT+GGG | - | chr2.4:19764194-19764213 | MS.gene059770:CDS | 30.0% | |
| TATACACTAGAATACATAGC+TGG | + | chr2.4:19763994-19764013 | None:intergenic | 30.0% | |
| TATGTTATTACAGGTAAGGT+TGG | - | chr2.4:19765550-19765569 | MS.gene059770:intron | 30.0% | |
| TCGGTAATGATTTGAGAAAA+TGG | + | chr2.4:19763774-19763793 | None:intergenic | 30.0% | |
| TGCTTTCATAACTCAAGAAA+AGG | - | chr2.4:19764989-19765008 | MS.gene059770:intron | 30.0% | |
| TGTCTATGTTATTACAGGTA+AGG | - | chr2.4:19765546-19765565 | MS.gene059770:intron | 30.0% | |
| TGTGTATATCTATCCTTGTT+TGG | - | chr2.4:19765254-19765273 | MS.gene059770:intron | 30.0% | |
| TTAACTCTACAGTTCCTATA+GGG | + | chr2.4:19764459-19764478 | None:intergenic | 30.0% | |
| TTAGTTAAGGTTGAATCACT+TGG | - | chr2.4:19764193-19764212 | MS.gene059770:CDS | 30.0% | |
| TTTAACTCTACAGTTCCTAT+AGG | + | chr2.4:19764460-19764479 | None:intergenic | 30.0% | |
| TTTCTCTTCAGCTTCTAATA+CGG | + | chr2.4:19764904-19764923 | None:intergenic | 30.0% | |
| ! | CAGATTATTCTTGCTTTGTT+TGG | - | chr2.4:19764286-19764305 | MS.gene059770:intron | 30.0% |
| ! | TCTAATACGGAAAGTACATT+TGG | + | chr2.4:19764891-19764910 | None:intergenic | 30.0% |
| ! | TTCGTAACTTTTATCCAAAC+AGG | - | chr2.4:19764409-19764428 | MS.gene059770:intron | 30.0% |
| !! | AATTGGTGATGGTAAGTTAA+TGG | - | chr2.4:19765220-19765239 | MS.gene059770:intron | 30.0% |
| !! | CTTCATTTTGAAAATGTCTC+TGG | - | chr2.4:19763514-19763533 | MS.gene059770:intron | 30.0% |
| !! | TATTCTTGCTTTGTTTGGTT+TGG | - | chr2.4:19764291-19764310 | MS.gene059770:intron | 30.0% |
| AAGTCAGCTATATGTATCGA+AGG | + | chr2.4:19763460-19763479 | None:intergenic | 35.0% | |
| AATCCCAATAGATGATCACA+TGG | - | chr2.4:19764047-19764066 | MS.gene059770:CDS | 35.0% | |
| AGTTAAGGTTGAATCACTTG+GGG | - | chr2.4:19764195-19764214 | MS.gene059770:CDS | 35.0% | |
| CATAAATCATAGTGCCTGTT+TGG | + | chr2.4:19764426-19764445 | None:intergenic | 35.0% | |
| CATTCTAATACAACTAACGG+CGG | - | chr2.4:19764653-19764672 | MS.gene059770:intron | 35.0% | |
| CTAGAATACATAGCTGGATA+TGG | + | chr2.4:19763988-19764007 | None:intergenic | 35.0% | |
| GATTTCTTACTGTCATCTTC+AGG | - | chr2.4:19764729-19764748 | MS.gene059770:CDS | 35.0% | |
| GCGGTATCAAAATTGAAGAA+AGG | - | chr2.4:19764672-19764691 | MS.gene059770:intron | 35.0% | |
| GCTGTTGAAATGATGTATGT+AGG | - | chr2.4:19765152-19765171 | MS.gene059770:intron | 35.0% | |
| GTACCATGTGATCATCTATT+GGG | + | chr2.4:19764053-19764072 | None:intergenic | 35.0% | |
| GTATTAGAAGCTGAAGAGAA+AGG | - | chr2.4:19764903-19764922 | MS.gene059770:intron | 35.0% | |
| TAACTCTACAGTTCCTATAG+GGG | + | chr2.4:19764458-19764477 | None:intergenic | 35.0% | |
| TATATGGTTGCACTGCTAAA+AGG | - | chr2.4:19765042-19765061 | MS.gene059770:intron | 35.0% | |
| TGTACCATGTGATCATCTAT+TGG | + | chr2.4:19764054-19764073 | None:intergenic | 35.0% | |
| TTAATGCTTCATGCCAAACA+AGG | + | chr2.4:19765270-19765289 | None:intergenic | 35.0% | |
| TTGAGGCTGATCTTAAGAAA+CGG | + | chr2.4:19764590-19764609 | None:intergenic | 35.0% | |
| ! | ATATAGCTGACTTTACCTAG+TGG | - | chr2.4:19763467-19763486 | MS.gene059770:intron | 35.0% |
| ! | CAATTCACGATTCGGAAAAT+AGG | - | chr2.4:19765500-19765519 | MS.gene059770:intron | 35.0% |
| ! | TCTATATGGATTGATGAGGT+TGG | - | chr2.4:19764936-19764955 | MS.gene059770:intron | 35.0% |
| ! | TGGTTCTATATGGATTGATG+AGG | - | chr2.4:19764932-19764951 | MS.gene059770:intron | 35.0% |
| !! | AAGGTGCATTTGGTTCTATA+TGG | - | chr2.4:19764922-19764941 | MS.gene059770:intron | 35.0% |
| !! | AGAAAGGAACTCTAAGATAC+TGG | - | chr2.4:19764688-19764707 | MS.gene059770:CDS | 35.0% |
| !! | GTTACTTTCGGATTTGCTAT+GGG | - | chr2.4:19765585-19765604 | MS.gene059770:intron | 35.0% |
| !! | TGTTACTTTCGGATTTGCTA+TGG | - | chr2.4:19765584-19765603 | MS.gene059770:intron | 35.0% |
| AAACGGTAACACGTAGACAT+CGG | + | chr2.4:19763793-19763812 | None:intergenic | 40.0% | |
| ACAAGTATTCTCTGTGTGTC+AGG | + | chr2.4:19765628-19765647 | None:intergenic | 40.0% | |
| ACACCTTGATCAACCAACTT+TGG | + | chr2.4:19765083-19765102 | None:intergenic | 40.0% | |
| ACAGTTCCTATAGGGGAAAA+GGG | + | chr2.4:19764451-19764470 | None:intergenic | 40.0% | |
| ACCTTGATCAACCAACTTTG+GGG | + | chr2.4:19765081-19765100 | None:intergenic | 40.0% | |
| ATGTGGGATGATCAACCAAT+TGG | - | chr2.4:19765203-19765222 | MS.gene059770:intron | 40.0% | |
| ATTGGGATTACCATCATTGC+TGG | + | chr2.4:19764036-19764055 | None:intergenic | 40.0% | |
| CAAGTATTCTCTGTGTGTCA+GGG | + | chr2.4:19765627-19765646 | None:intergenic | 40.0% | |
| CACCTTGATCAACCAACTTT+GGG | + | chr2.4:19765082-19765101 | None:intergenic | 40.0% | |
| CATACTTGATCCAGCAATGA+TGG | - | chr2.4:19764023-19764042 | MS.gene059770:CDS | 40.0% | |
| CTGATCTTAAGAAACGGTCA+AGG | + | chr2.4:19764584-19764603 | None:intergenic | 40.0% | |
| GATGACAGTAAGAAATCTCC+AGG | + | chr2.4:19764726-19764745 | None:intergenic | 40.0% | |
| GATGATCAACCAATTGGTGA+TGG | - | chr2.4:19765209-19765228 | MS.gene059770:intron | 40.0% | |
| GATGATCACATGGTACATAG+AGG | - | chr2.4:19764057-19764076 | MS.gene059770:CDS | 40.0% | |
| GATTTCTCTCAGTGCAAAGA+AGG | - | chr2.4:19764792-19764811 | MS.gene059770:CDS | 40.0% | |
| GCTTCATCAAACATGGAGTT+CGG | - | chr2.4:19763951-19763970 | MS.gene059770:CDS | 40.0% | |
| TACAGTTCCTATAGGGGAAA+AGG | + | chr2.4:19764452-19764471 | None:intergenic | 40.0% | |
| TACTTCCAGTGTACCAATGA+AGG | - | chr2.4:19764827-19764846 | MS.gene059770:CDS | 40.0% | |
| TCTCAGCTTCAAGAAAGTCA+CGG | + | chr2.4:19764356-19764375 | None:intergenic | 40.0% | |
| TGATCATCCCACATGATGAT+AGG | + | chr2.4:19765197-19765216 | None:intergenic | 40.0% | |
| TGTCGTGTCAGTGTCAAATA+AGG | + | chr2.4:19763554-19763573 | None:intergenic | 40.0% | |
| TGTCTTGCCTATCATCATGT+GGG | - | chr2.4:19765187-19765206 | MS.gene059770:intron | 40.0% | |
| TTCCAGTTAGGGATTGAACT+CGG | + | chr2.4:19764226-19764245 | None:intergenic | 40.0% | |
| ! | CTAAGATACTGGTTAAGTGC+AGG | - | chr2.4:19764699-19764718 | MS.gene059770:CDS | 40.0% |
| ! | GAGGTTGGTTATATTGCTGA+AGG | - | chr2.4:19764951-19764970 | MS.gene059770:intron | 40.0% |
| !! | CGAGGATATCTTTGCTTTTG+AGG | + | chr2.4:19764607-19764626 | None:intergenic | 40.0% |
| !! | GCAAATAAAGGTGCCTTCAT+TGG | + | chr2.4:19764843-19764862 | None:intergenic | 40.0% |
| !! | GGATTTGCTATGGGATGATA+TGG | - | chr2.4:19765594-19765613 | MS.gene059770:intron | 40.0% |
| !! | TCTTGCTTTGTTTGGTTTGG+CGG | - | chr2.4:19764294-19764313 | MS.gene059770:intron | 40.0% |
| !!! | CTTCATTTTGGAAGTGTCTC+TGG | - | chr2.4:19763689-19763708 | MS.gene059770:CDS | 40.0% |
| AGTCACGGCAAATCATGCAT+TGG | + | chr2.4:19764341-19764360 | None:intergenic | 45.0% | |
| ATGACTACTGCGTAGAATGC+AGG | + | chr2.4:19764765-19764784 | None:intergenic | 45.0% | |
| ATGCATTGGGAAGCGAGAAT+TGG | + | chr2.4:19764327-19764346 | None:intergenic | 45.0% | |
| CACATGATGATAGGCAAGAC+AGG | + | chr2.4:19765188-19765207 | None:intergenic | 45.0% | |
| CGTGTTCTCTTCATCATCTG+AGG | - | chr2.4:19763372-19763391 | MS.gene059770:intron | 45.0% | |
| CTATGGGATGATATGGTAGC+TGG | - | chr2.4:19765601-19765620 | MS.gene059770:intron | 45.0% | |
| CTCAAGACACCTCTATGAGT+TGG | - | chr2.4:19764551-19764570 | MS.gene059770:intron | 45.0% | |
| CTGTCTTGCCTATCATCATG+TGG | - | chr2.4:19765186-19765205 | MS.gene059770:intron | 45.0% | |
| GGTGAACATCCAACTCATAG+AGG | + | chr2.4:19764563-19764582 | None:intergenic | 45.0% | |
| GTCACGGCAAATCATGCATT+GGG | + | chr2.4:19764340-19764359 | None:intergenic | 45.0% | |
| GTTACGAATGGCCAAAAGCA+CGG | + | chr2.4:19764397-19764416 | None:intergenic | 45.0% | |
| TAATCTGGACTTCGACTGTG+TGG | + | chr2.4:19764273-19764292 | None:intergenic | 45.0% | |
| TAGCAGTATCAAACACGCCA+TGG | + | chr2.4:19764083-19764102 | None:intergenic | 45.0% | |
| TCATCAAACATGGAGTTCGG+TGG | - | chr2.4:19763954-19763973 | MS.gene059770:CDS | 45.0% | |
| TCCAGTTAGGGATTGAACTC+GGG | + | chr2.4:19764225-19764244 | None:intergenic | 45.0% | |
| TCTTGAACTTGCCCCAAAGT+TGG | - | chr2.4:19765067-19765086 | MS.gene059770:intron | 45.0% | |
| TGCATTGGGAAGCGAGAATT+GGG | + | chr2.4:19764326-19764345 | None:intergenic | 45.0% | |
| ! | AGTTAGACTTGCCGTGCTTT+TGG | - | chr2.4:19764383-19764402 | MS.gene059770:intron | 45.0% |
| ! | ATGTAGCTGACTTCACCTAG+TGG | - | chr2.4:19763642-19763661 | MS.gene059770:CDS | 45.0% |
| ! | CGAAGAGTTGATCGCGAAAA+AGG | + | chr2.4:19764630-19764649 | None:intergenic | 45.0% |
| ! | GCTGAAGAGAAAGGTGCATT+TGG | - | chr2.4:19764912-19764931 | MS.gene059770:intron | 45.0% |
| ! | TATGTGCCCTTTTCCCCTAT+AGG | - | chr2.4:19764442-19764461 | MS.gene059770:intron | 45.0% |
| !! | GTTGCATCGGCACTTCATTT+TGG | - | chr2.4:19763677-19763696 | MS.gene059770:CDS | 45.0% |
| !!! | ATTTTTAAGTAAAAAATAAT+TGG | + | chr2.4:19765434-19765453 | None:intergenic | 5.0% |
| !!! | TTTTTAAGTAAAAAATAATT+GGG | + | chr2.4:19765433-19765452 | None:intergenic | 5.0% |
| ACCCGAGTTCAATCCCTAAC+TGG | - | chr2.4:19764221-19764240 | MS.gene059770:CDS | 50.0% | |
| ACTGCAACCTCTGGTGAGTT+GGG | - | chr2.4:19763163-19763182 | MS.gene059770:CDS | 50.0% | |
| ACTGCGTAGAATGCAGGTGT+TGG | + | chr2.4:19764759-19764778 | None:intergenic | 50.0% | |
| AGGTGCCTTCATTGGTACAC+TGG | + | chr2.4:19764835-19764854 | None:intergenic | 50.0% | |
| AGGTTGCAGTGGTCTCAGTA+GGG | + | chr2.4:19763153-19763172 | None:intergenic | 50.0% | |
| AGTTGATCGCGAAAAAGGCG+AGG | + | chr2.4:19764625-19764644 | None:intergenic | 50.0% | |
| CACATGGTACATAGAGGCCA+TGG | - | chr2.4:19764063-19764082 | MS.gene059770:CDS | 50.0% | |
| CTGACTGTGGATGAAGCTAG+AGG | - | chr2.4:19765128-19765147 | MS.gene059770:intron | 50.0% | |
| TGGACTTCGACTGTGTGGTA+AGG | + | chr2.4:19764268-19764287 | None:intergenic | 50.0% | |
| ! | GCCCCAAAGTTGGTTGATCA+AGG | - | chr2.4:19765077-19765096 | MS.gene059770:intron | 50.0% |
| ! | TACTGGTTAAGTGCAGGTCC+TGG | - | chr2.4:19764705-19764724 | MS.gene059770:CDS | 50.0% |
| !! | TGCTTTGTTTGGTTTGGCGG+TGG | - | chr2.4:19764297-19764316 | MS.gene059770:intron | 50.0% |
| AAGGCAACCCAACTCACCAG+AGG | + | chr2.4:19763173-19763192 | None:intergenic | 55.0% | |
| ACTGAGACCACTGCAACCTC+TGG | - | chr2.4:19763154-19763173 | MS.gene059770:CDS | 55.0% | |
| CAACTCACCAGAGGTTGCAG+TGG | + | chr2.4:19763164-19763183 | None:intergenic | 55.0% | |
| CACTGCAACCTCTGGTGAGT+TGG | - | chr2.4:19763162-19763181 | MS.gene059770:CDS | 55.0% | |
| CTGACACGACACTACGCATG+TGG | - | chr2.4:19763563-19763582 | MS.gene059770:intron | 55.0% | |
| GAGGTTGCAGTGGTCTCAGT+AGG | + | chr2.4:19763154-19763173 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2.4 | gene | 19763142 | 19765660 | 19763142 | ID=MS.gene059770 |
| chr2.4 | mRNA | 19763142 | 19765660 | 19763142 | ID=MS.gene059770.t1;Parent=MS.gene059770 |
| chr2.4 | exon | 19765627 | 19765660 | 19765627 | ID=MS.gene059770.t1.exon1;Parent=MS.gene059770.t1 |
| chr2.4 | CDS | 19765627 | 19765660 | 19765627 | ID=cds.MS.gene059770.t1;Parent=MS.gene059770.t1 |
| chr2.4 | exon | 19765409 | 19765461 | 19765409 | ID=MS.gene059770.t1.exon2;Parent=MS.gene059770.t1 |
| chr2.4 | CDS | 19765409 | 19765461 | 19765409 | ID=cds.MS.gene059770.t1;Parent=MS.gene059770.t1 |
| chr2.4 | exon | 19764687 | 19764862 | 19764687 | ID=MS.gene059770.t1.exon3;Parent=MS.gene059770.t1 |
| chr2.4 | CDS | 19764687 | 19764862 | 19764687 | ID=cds.MS.gene059770.t1;Parent=MS.gene059770.t1 |
| chr2.4 | exon | 19763572 | 19764245 | 19763572 | ID=MS.gene059770.t1.exon4;Parent=MS.gene059770.t1 |
| chr2.4 | CDS | 19763572 | 19764245 | 19763572 | ID=cds.MS.gene059770.t1;Parent=MS.gene059770.t1 |
| chr2.4 | exon | 19763142 | 19763239 | 19763142 | ID=MS.gene059770.t1.exon5;Parent=MS.gene059770.t1 |
| chr2.4 | CDS | 19763142 | 19763239 | 19763142 | ID=cds.MS.gene059770.t1;Parent=MS.gene059770.t1 |
| Gene Sequence |
| Protein sequence |
