AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene060694

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene060694.t1 MTR_2g078730 97.674 344 8 0 1 344 1 344 0.0 691
MS.gene060694.t1 MTR_1g026860 58.642 324 127 3 26 343 60 382 2.14e-134 388
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene060694.t1 AT5G57850 57.994 319 130 2 26 343 58 373 1.86e-128 372
MS.gene060694.t1 AT5G57850 60.135 296 117 1 49 343 1 296 5.07e-128 369
MS.gene060694.t1 AT3G05190 23.297 279 196 7 55 324 267 536 3.19e-14 73.9
MS.gene060694.t1 AT3G05190 23.297 279 196 7 55 324 267 536 3.19e-14 73.9
MS.gene060694.t1 AT3G05190 23.297 279 196 7 55 324 267 536 3.19e-14 73.9
MS.gene060694.t1 AT5G27410 22.535 284 192 8 55 324 176 445 2.41e-12 68.2
MS.gene060694.t1 AT5G27410 22.535 284 192 8 55 324 641 910 2.76e-12 68.6
MS.gene060694.t1 AT5G27410 22.535 284 192 8 55 324 264 533 3.52e-12 67.8

Find 74 sgRNAs with CRISPR-Local

Find 155 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATATGGTTGCACTGCTAAA+AGG 0.283245 2.1:-21772241 MS.gene060694:CDS
GCTATGTATTCTAGTGTATA+TGG 0.321285 2.1:-21773289 MS.gene060694:CDS
TGTACCATGTGATCATCTAT+TGG 0.330668 2.1:+21773232 None:intergenic
GATTTCTTACTGTCATCTTC+AGG 0.332881 2.1:-21772554 MS.gene060694:CDS
CGAAGAGTTGATCGCGAAAA+AGG 0.334858 2.1:+21772656 None:intergenic
GGATTTGCTATGGGATGATA+TGG 0.343910 2.1:-21771689 MS.gene060694:CDS
CACCTTGATCAACCAACTTT+GGG 0.358321 2.1:+21772204 None:intergenic
GCAAATAAAGGTGCCTTCAT+TGG 0.359777 2.1:+21772443 None:intergenic
TCTAATACGGAAAGTACATT+TGG 0.368821 2.1:+21772395 None:intergenic
ATTGGGATTACCATCATTGC+TGG 0.374631 2.1:+21773250 None:intergenic
AAGGTGCATTTGGTTCTATA+TGG 0.376862 2.1:-21772361 MS.gene060694:CDS
AGAATTAACAATGTTACTTT+CGG 0.378886 2.1:-21771710 MS.gene060694:CDS
ACAAGTATTCTCTGTGTGTC+AGG 0.378962 2.1:+21771658 None:intergenic
ATGAAAGCAACATTCACATT+TGG 0.387868 2.1:+21772308 None:intergenic
CTAGAATACATAGCTGGATA+TGG 0.396785 2.1:+21773298 None:intergenic
ACACCTTGATCAACCAACTT+TGG 0.403764 2.1:+21772203 None:intergenic
TTGTAGGTTCATTAAACATA+AGG 0.405748 2.1:+21771634 None:intergenic
TGATCATCCCACATGATGAT+AGG 0.413305 2.1:+21772089 None:intergenic
GTACCATGTGATCATCTATT+GGG 0.414603 2.1:+21773233 None:intergenic
GATACTGCTATTATGTTTGA+AGG 0.421904 2.1:-21773190 MS.gene060694:CDS
GCTGAAGAGAAAGGTGCATT+TGG 0.425574 2.1:-21772371 MS.gene060694:CDS
TTTCTCTTCAGCTTCTAATA+CGG 0.429071 2.1:+21772382 None:intergenic
TGTTACTTTCGGATTTGCTA+TGG 0.443052 2.1:-21771699 MS.gene060694:CDS
AGAAAGGAACTCTAAGATAC+TGG 0.447947 2.1:-21772595 MS.gene060694:CDS
GCCCCAAAGTTGGTTGATCA+AGG 0.457467 2.1:-21772206 MS.gene060694:CDS
ATTAACTTACCATCACCAAT+TGG 0.463704 2.1:+21772065 None:intergenic
CATACTTGATCCAGCAATGA+TGG 0.467941 2.1:-21773260 MS.gene060694:CDS
TCTTGAACTTGCCCCAAAGT+TGG 0.471833 2.1:-21772216 MS.gene060694:CDS
TGCTTTCATAACTCAAGAAA+AGG 0.478668 2.1:-21772294 MS.gene060694:CDS
CTCAAGACACCTCTATGAGT+TGG 0.480888 2.1:-21772732 MS.gene060694:intron
TATGTTATTACAGGTAAGGT+TGG 0.487438 2.1:-21771733 MS.gene060694:intron
TACTGGTTAAGTGCAGGTCC+TGG 0.488263 2.1:-21772578 MS.gene060694:CDS
CTATGGGATGATATGGTAGC+TGG 0.500347 2.1:-21771682 MS.gene060694:CDS
TCTATATGGATTGATGAGGT+TGG 0.504339 2.1:-21772347 MS.gene060694:CDS
GCTTCATCAAACATGGAGTT+CGG 0.504869 2.1:-21773332 MS.gene060694:CDS
GTTACTTTCGGATTTGCTAT+GGG 0.509505 2.1:-21771698 MS.gene060694:CDS
CTGTCTTGCCTATCATCATG+TGG 0.512259 2.1:-21772097 MS.gene060694:CDS
TACTTCCAGTGTACCAATGA+AGG 0.515569 2.1:-21772456 MS.gene060694:CDS
ACTGAGACCACTGCAACCTC+TGG 0.521559 2.1:-21774129 MS.gene060694:intron
GAGGTTGCAGTGGTCTCAGT+AGG 0.525496 2.1:+21774132 None:intergenic
CACATGATGATAGGCAAGAC+AGG 0.530752 2.1:+21772098 None:intergenic
CGTGTTCTCTTCATCATCTG+AGG 0.533298 2.1:-21773911 MS.gene060694:intron
GATTTCTCTCAGTGCAAAGA+AGG 0.541297 2.1:-21772491 MS.gene060694:CDS
GATGACAGTAAGAAATCTCC+AGG 0.544571 2.1:+21772560 None:intergenic
TTGAGGCTGATCTTAAGAAA+CGG 0.550222 2.1:+21772696 None:intergenic
ATACTGCTATTATGTTTGAA+GGG 0.551151 2.1:-21773189 MS.gene060694:intron
GCGGTATCAAAATTGAAGAA+AGG 0.557986 2.1:-21772611 MS.gene060694:CDS
CTAAGATACTGGTTAAGTGC+AGG 0.560722 2.1:-21772584 MS.gene060694:CDS
ATGACTACTGCGTAGAATGC+AGG 0.561557 2.1:+21772521 None:intergenic
AGGTTGCAGTGGTCTCAGTA+GGG 0.572433 2.1:+21774133 None:intergenic
TATACACTAGAATACATAGC+TGG 0.574410 2.1:+21773292 None:intergenic
AGGTGCCTTCATTGGTACAC+TGG 0.574750 2.1:+21772451 None:intergenic
GCTGTTGAAATGATGTATGT+AGG 0.580482 2.1:-21772131 MS.gene060694:CDS
ATGTGGGATGATCAACCAAT+TGG 0.582385 2.1:-21772080 MS.gene060694:CDS
CACATGGTACATAGAGGCCA+TGG 0.583140 2.1:-21773220 MS.gene060694:CDS
ACCTTGATCAACCAACTTTG+GGG 0.583923 2.1:+21772205 None:intergenic
CAGCATTCTAATACAACTAA+CGG 0.586750 2.1:-21772633 MS.gene060694:CDS
GTATTAGAAGCTGAAGAGAA+AGG 0.586831 2.1:-21772380 MS.gene060694:CDS
ACTGCGTAGAATGCAGGTGT+TGG 0.589080 2.1:+21772527 None:intergenic
TAGAAAAGCTTCATCAAACA+TGG 0.598481 2.1:-21773339 MS.gene060694:CDS
GGTGAACATCCAACTCATAG+AGG 0.601894 2.1:+21772723 None:intergenic
TGTCTTGCCTATCATCATGT+GGG 0.602668 2.1:-21772096 MS.gene060694:CDS
GATGATCACATGGTACATAG+AGG 0.611347 2.1:-21773226 MS.gene060694:CDS
CAAGTATTCTCTGTGTGTCA+GGG 0.611968 2.1:+21771659 None:intergenic
TAGCAGTATCAAACACGCCA+TGG 0.630664 2.1:+21773203 None:intergenic
TGGTTCTATATGGATTGATG+AGG 0.634951 2.1:-21772351 MS.gene060694:CDS
GAGGTTGGTTATATTGCTGA+AGG 0.635904 2.1:-21772332 MS.gene060694:CDS
TCATCAAACATGGAGTTCGG+TGG 0.644411 2.1:-21773329 MS.gene060694:CDS
CAACTCACCAGAGGTTGCAG+TGG 0.666043 2.1:+21774122 None:intergenic
GATGATCAACCAATTGGTGA+TGG 0.668433 2.1:-21772074 MS.gene060694:intron
CTGATCTTAAGAAACGGTCA+AGG 0.670298 2.1:+21772702 None:intergenic
AATCCCAATAGATGATCACA+TGG 0.675252 2.1:-21773236 MS.gene060694:CDS
ATGTATTCTAGTGTATATGG+AGG 0.687618 2.1:-21773286 MS.gene060694:CDS
CATTCTAATACAACTAACGG+CGG 0.748431 2.1:-21772630 MS.gene060694:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTCTATCATTATTATAAGA+TGG + chr2.1:21771932-21771951 None:intergenic 15.0%
!! TTAAAGTTTCAAATTAGAAT+AGG + chr2.1:21771712-21771731 None:intergenic 15.0%
!!! ATTCTAATTTGAAACTTTAA+TGG - chr2.1:21771712-21771731 MS.gene060694:CDS 15.0%
!! GAGTTAAAAAAATGCATTAT+TGG - chr2.1:21772975-21772994 MS.gene060694:intron 20.0%
!! TAAGTAAAAAATAATTGGGA+CGG + chr2.1:21773932-21773951 None:intergenic 20.0%
!! TATAGAATGTTATCGAAAAA+AGG + chr2.1:21773529-21773548 None:intergenic 20.0%
!!! AGAATTAACAATGTTACTTT+CGG - chr2.1:21774076-21774095 MS.gene060694:intron 20.0%
!!! TGTTCTTATTGTATATGTTT+TGG - chr2.1:21771790-21771809 MS.gene060694:intron 20.0%
!!! TTTTTCATTGTTGCAAATAA+AGG + chr2.1:21773358-21773377 None:intergenic 20.0%
!!! TTTTTCGATAACATTCTATA+TGG - chr2.1:21773529-21773548 MS.gene060694:intron 20.0%
! AACATAATTCTTATTCCACT+AGG + chr2.1:21772163-21772182 None:intergenic 25.0%
! ACCAAAAATTATTCCAGTTA+GGG + chr2.1:21772740-21772759 None:intergenic 25.0%
! ATAAGATTCAATTCACGATT+CGG - chr2.1:21773995-21774014 MS.gene060694:intron 25.0%
! ATACTGCTATTATGTTTGAA+GGG - chr2.1:21772597-21772616 MS.gene060694:CDS 25.0%
! GAATAAGAATTATGTTGCAT+CGG - chr2.1:21772167-21772186 MS.gene060694:CDS 25.0%
! TATGACACTTAACACTAAAA+CGG + chr2.1:21772313-21772332 None:intergenic 25.0%
! TTAAAGTTTGCAAGTTTCAT+TGG - chr2.1:21772405-21772424 MS.gene060694:CDS 25.0%
! TTGATTGTCTATGTTATTAC+AGG - chr2.1:21774044-21774063 MS.gene060694:intron 25.0%
! TTTGTTAAATCAAAAGTGGT+TGG - chr2.1:21772656-21772675 MS.gene060694:CDS 25.0%
!! AAGTAGTTAAGCTTTAGTTA+AGG - chr2.1:21772683-21772702 MS.gene060694:CDS 25.0%
!! TGCTTTACTAGTTCATATTT+TGG - chr2.1:21771738-21771757 MS.gene060694:intron 25.0%
!! TTCATATCGATTAAGCTTAA+AGG + chr2.1:21773796-21773815 None:intergenic 25.0%
!!! AAGCTTTGTTAAATCAAAAG+TGG - chr2.1:21772652-21772671 MS.gene060694:CDS 25.0%
!!! GCTAAATTTGTTTTCTTTCT+TGG - chr2.1:21771812-21771831 MS.gene060694:intron 25.0%
AACTAAAGCTTAACTACTTC+AGG + chr2.1:21772682-21772701 None:intergenic 30.0%
AACTACTAAAAATCTGACTG+TGG - chr2.1:21773618-21773637 MS.gene060694:intron 30.0%
AATAGGATCACAAAAACTGA+AGG + chr2.1:21771695-21771714 None:intergenic 30.0%
ATGAAAGCAACATTCACATT+TGG + chr2.1:21773481-21773500 None:intergenic 30.0%
ATGGTACTACAAAAAAGTGA+AGG + chr2.1:21771913-21771932 None:intergenic 30.0%
ATGTATTCTAGTGTATATGG+AGG - chr2.1:21772500-21772519 MS.gene060694:CDS 30.0%
ATTAACTTACCATCACCAAT+TGG + chr2.1:21773724-21773743 None:intergenic 30.0%
ATTCAGTGCTTCAAAAGATA+AGG - chr2.1:21772332-21772351 MS.gene060694:CDS 30.0%
CAAACAAAGCAAGAATAATC+TGG + chr2.1:21772791-21772810 None:intergenic 30.0%
CAGCATTCTAATACAACTAA+CGG - chr2.1:21773153-21773172 MS.gene060694:intron 30.0%
GAATAAGAACTATGTAGCAT+CGG - chr2.1:21771992-21772011 MS.gene060694:intron 30.0%
GACCAAAAATTATTCCAGTT+AGG + chr2.1:21772741-21772760 None:intergenic 30.0%
GATACTGCTATTATGTTTGA+AGG - chr2.1:21772596-21772615 MS.gene060694:CDS 30.0%
GCTATGTATTCTAGTGTATA+TGG - chr2.1:21772497-21772516 MS.gene060694:CDS 30.0%
GTTTGGATAAAAGTTACGAA+TGG + chr2.1:21772912-21772931 None:intergenic 30.0%
TACATAGTTCTTATTCCACT+AGG + chr2.1:21771988-21772007 None:intergenic 30.0%
TAGAAAAGCTTCATCAAACA+TGG - chr2.1:21772447-21772466 MS.gene060694:CDS 30.0%
TAGTTAAGGTTGAATCACTT+GGG - chr2.1:21772697-21772716 MS.gene060694:CDS 30.0%
TATACACTAGAATACATAGC+TGG + chr2.1:21772497-21772516 None:intergenic 30.0%
TATGTTATTACAGGTAAGGT+TGG - chr2.1:21774053-21774072 MS.gene060694:intron 30.0%
TCGGTAATGATTTGAGAAAA+TGG + chr2.1:21772277-21772296 None:intergenic 30.0%
TGCTTTCATAACTCAAGAAA+AGG - chr2.1:21773492-21773511 MS.gene060694:intron 30.0%
TGTCTATGTTATTACAGGTA+AGG - chr2.1:21774049-21774068 MS.gene060694:intron 30.0%
TGTGTATATCTATCCTTGTT+TGG - chr2.1:21773757-21773776 MS.gene060694:intron 30.0%
TTAACTCTACAGTTCCTATA+GGG + chr2.1:21772962-21772981 None:intergenic 30.0%
TTAGTTAAGGTTGAATCACT+TGG - chr2.1:21772696-21772715 MS.gene060694:CDS 30.0%
TTTAACTCTACAGTTCCTAT+AGG + chr2.1:21772963-21772982 None:intergenic 30.0%
TTTCTCTTCAGCTTCTAATA+CGG + chr2.1:21773407-21773426 None:intergenic 30.0%
! CAGATTATTCTTGCTTTGTT+TGG - chr2.1:21772789-21772808 MS.gene060694:intron 30.0%
! TCCCTAACTGGAATAATTTT+TGG - chr2.1:21772736-21772755 MS.gene060694:intron 30.0%
! TCTAATACGGAAAGTACATT+TGG + chr2.1:21773394-21773413 None:intergenic 30.0%
! TTCGTAACTTTTATCCAAAC+AGG - chr2.1:21772912-21772931 MS.gene060694:intron 30.0%
!! AATTGGTGATGGTAAGTTAA+TGG - chr2.1:21773723-21773742 MS.gene060694:intron 30.0%
!! CTTCATTTTGAAAATGTCTC+TGG - chr2.1:21772017-21772036 MS.gene060694:intron 30.0%
!! TATTCTTGCTTTGTTTGGTT+TGG - chr2.1:21772794-21772813 MS.gene060694:intron 30.0%
AAGTCAGCTATATGTATCGA+AGG + chr2.1:21771963-21771982 None:intergenic 35.0%
AATCCCAATAGATGATCACA+TGG - chr2.1:21772550-21772569 MS.gene060694:CDS 35.0%
AGTTAAGGTTGAATCACTTG+GGG - chr2.1:21772698-21772717 MS.gene060694:CDS 35.0%
CATAAATCATAGTGCCTGTT+TGG + chr2.1:21772929-21772948 None:intergenic 35.0%
CATTCTAATACAACTAACGG+CGG - chr2.1:21773156-21773175 MS.gene060694:intron 35.0%
CTAGAATACATAGCTGGATA+TGG + chr2.1:21772491-21772510 None:intergenic 35.0%
GATTTCTTACTGTCATCTTC+AGG - chr2.1:21773232-21773251 MS.gene060694:CDS 35.0%
GCGGTATCAAAATTGAAGAA+AGG - chr2.1:21773175-21773194 MS.gene060694:intron 35.0%
GCTGTTGAAATGATGTATGT+AGG - chr2.1:21773655-21773674 MS.gene060694:intron 35.0%
GTACCATGTGATCATCTATT+GGG + chr2.1:21772556-21772575 None:intergenic 35.0%
GTATTAGAAGCTGAAGAGAA+AGG - chr2.1:21773406-21773425 MS.gene060694:intron 35.0%
TAACTCTACAGTTCCTATAG+GGG + chr2.1:21772961-21772980 None:intergenic 35.0%
TATATGGTTGCACTGCTAAA+AGG - chr2.1:21773545-21773564 MS.gene060694:intron 35.0%
TGTACCATGTGATCATCTAT+TGG + chr2.1:21772557-21772576 None:intergenic 35.0%
TTAATGCTTCATGCCAAACA+AGG + chr2.1:21773773-21773792 None:intergenic 35.0%
TTGAGGCTGATCTTAAGAAA+CGG + chr2.1:21773093-21773112 None:intergenic 35.0%
! ATATAGCTGACTTTACCTAG+TGG - chr2.1:21771970-21771989 MS.gene060694:intron 35.0%
! CAATTCACGATTCGGAAAAT+AGG - chr2.1:21774003-21774022 MS.gene060694:intron 35.0%
! TCTATATGGATTGATGAGGT+TGG - chr2.1:21773439-21773458 MS.gene060694:intron 35.0%
! TGGTTCTATATGGATTGATG+AGG - chr2.1:21773435-21773454 MS.gene060694:intron 35.0%
!! AAGGTGCATTTGGTTCTATA+TGG - chr2.1:21773425-21773444 MS.gene060694:intron 35.0%
!! AGAAAGGAACTCTAAGATAC+TGG - chr2.1:21773191-21773210 MS.gene060694:CDS 35.0%
!! GTTACTTTCGGATTTGCTAT+GGG - chr2.1:21774088-21774107 MS.gene060694:intron 35.0%
!! TGTTACTTTCGGATTTGCTA+TGG - chr2.1:21774087-21774106 MS.gene060694:intron 35.0%
AAACGGTAACACGTAGACAT+CGG + chr2.1:21772296-21772315 None:intergenic 40.0%
ACAAGTATTCTCTGTGTGTC+AGG + chr2.1:21774131-21774150 None:intergenic 40.0%
ACACCTTGATCAACCAACTT+TGG + chr2.1:21773586-21773605 None:intergenic 40.0%
ACAGTTCCTATAGGGGAAAA+GGG + chr2.1:21772954-21772973 None:intergenic 40.0%
ACCTTGATCAACCAACTTTG+GGG + chr2.1:21773584-21773603 None:intergenic 40.0%
ATGTGGGATGATCAACCAAT+TGG - chr2.1:21773706-21773725 MS.gene060694:intron 40.0%
ATTGGGATTACCATCATTGC+TGG + chr2.1:21772539-21772558 None:intergenic 40.0%
CAAGTATTCTCTGTGTGTCA+GGG + chr2.1:21774130-21774149 None:intergenic 40.0%
CACCTTGATCAACCAACTTT+GGG + chr2.1:21773585-21773604 None:intergenic 40.0%
CATACTTGATCCAGCAATGA+TGG - chr2.1:21772526-21772545 MS.gene060694:CDS 40.0%
CTGATCTTAAGAAACGGTCA+AGG + chr2.1:21773087-21773106 None:intergenic 40.0%
GATGACAGTAAGAAATCTCC+AGG + chr2.1:21773229-21773248 None:intergenic 40.0%
GATGATCAACCAATTGGTGA+TGG - chr2.1:21773712-21773731 MS.gene060694:intron 40.0%
GATGATCACATGGTACATAG+AGG - chr2.1:21772560-21772579 MS.gene060694:CDS 40.0%
GATTTCTCTCAGTGCAAAGA+AGG - chr2.1:21773295-21773314 MS.gene060694:CDS 40.0%
GCTTCATCAAACATGGAGTT+CGG - chr2.1:21772454-21772473 MS.gene060694:CDS 40.0%
TACAGTTCCTATAGGGGAAA+AGG + chr2.1:21772955-21772974 None:intergenic 40.0%
TACTTCCAGTGTACCAATGA+AGG - chr2.1:21773330-21773349 MS.gene060694:CDS 40.0%
TCTCAGCTTCAAGAAAGTCA+CGG + chr2.1:21772859-21772878 None:intergenic 40.0%
TGATCATCCCACATGATGAT+AGG + chr2.1:21773700-21773719 None:intergenic 40.0%
TGTCGTGTCAGTGTCAAATA+AGG + chr2.1:21772057-21772076 None:intergenic 40.0%
TGTCTTGCCTATCATCATGT+GGG - chr2.1:21773690-21773709 MS.gene060694:intron 40.0%
TTCCAGTTAGGGATTGAACT+CGG + chr2.1:21772729-21772748 None:intergenic 40.0%
! CTAAGATACTGGTTAAGTGC+AGG - chr2.1:21773202-21773221 MS.gene060694:CDS 40.0%
! GAGGTTGGTTATATTGCTGA+AGG - chr2.1:21773454-21773473 MS.gene060694:intron 40.0%
!! CGAGGATATCTTTGCTTTTG+AGG + chr2.1:21773110-21773129 None:intergenic 40.0%
!! GCAAATAAAGGTGCCTTCAT+TGG + chr2.1:21773346-21773365 None:intergenic 40.0%
!! GGATTTGCTATGGGATGATA+TGG - chr2.1:21774097-21774116 MS.gene060694:intron 40.0%
!! TCTTGCTTTGTTTGGTTTGG+CGG - chr2.1:21772797-21772816 MS.gene060694:intron 40.0%
!!! CTTCATTTTGGAAGTGTCTC+TGG - chr2.1:21772192-21772211 MS.gene060694:CDS 40.0%
AGTCACGGCAAATCATGCAT+TGG + chr2.1:21772844-21772863 None:intergenic 45.0%
ATGACTACTGCGTAGAATGC+AGG + chr2.1:21773268-21773287 None:intergenic 45.0%
ATGCATTGGGAAGCGAGAAT+TGG + chr2.1:21772830-21772849 None:intergenic 45.0%
CACATGATGATAGGCAAGAC+AGG + chr2.1:21773691-21773710 None:intergenic 45.0%
CGTGTTCTCTTCATCATCTG+AGG - chr2.1:21771875-21771894 MS.gene060694:intron 45.0%
CTATGGGATGATATGGTAGC+TGG - chr2.1:21774104-21774123 MS.gene060694:intron 45.0%
CTCAAGACACCTCTATGAGT+TGG - chr2.1:21773054-21773073 MS.gene060694:intron 45.0%
CTGTCTTGCCTATCATCATG+TGG - chr2.1:21773689-21773708 MS.gene060694:intron 45.0%
GGTGAACATCCAACTCATAG+AGG + chr2.1:21773066-21773085 None:intergenic 45.0%
GTCACGGCAAATCATGCATT+GGG + chr2.1:21772843-21772862 None:intergenic 45.0%
GTTACGAATGGCCAAAAGCA+CGG + chr2.1:21772900-21772919 None:intergenic 45.0%
TAATCTGGACTTCGACTGTG+TGG + chr2.1:21772776-21772795 None:intergenic 45.0%
TAGCAGTATCAAACACGCCA+TGG + chr2.1:21772586-21772605 None:intergenic 45.0%
TCATCAAACATGGAGTTCGG+TGG - chr2.1:21772457-21772476 MS.gene060694:CDS 45.0%
TCCAGTTAGGGATTGAACTC+GGG + chr2.1:21772728-21772747 None:intergenic 45.0%
TCTTGAACTTGCCCCAAAGT+TGG - chr2.1:21773570-21773589 MS.gene060694:intron 45.0%
TGCATTGGGAAGCGAGAATT+GGG + chr2.1:21772829-21772848 None:intergenic 45.0%
! AGTTAGACTTGCCGTGCTTT+TGG - chr2.1:21772886-21772905 MS.gene060694:intron 45.0%
! ATGTAGCTGACTTCACCTAG+TGG - chr2.1:21772145-21772164 MS.gene060694:CDS 45.0%
! CGAAGAGTTGATCGCGAAAA+AGG + chr2.1:21773133-21773152 None:intergenic 45.0%
! GCTGAAGAGAAAGGTGCATT+TGG - chr2.1:21773415-21773434 MS.gene060694:intron 45.0%
! TATGTGCCCTTTTCCCCTAT+AGG - chr2.1:21772945-21772964 MS.gene060694:intron 45.0%
!! GTTGCATCGGCACTTCATTT+TGG - chr2.1:21772180-21772199 MS.gene060694:CDS 45.0%
!!! ATTTTTAAGTAAAAAATAAT+TGG + chr2.1:21773937-21773956 None:intergenic 5.0%
!!! TTTTTAAGTAAAAAATAATT+GGG + chr2.1:21773936-21773955 None:intergenic 5.0%
ACCCGAGTTCAATCCCTAAC+TGG - chr2.1:21772724-21772743 MS.gene060694:CDS 50.0%
ACTGCAACCTCTGGTGAGTT+GGG - chr2.1:21771666-21771685 MS.gene060694:CDS 50.0%
ACTGCGTAGAATGCAGGTGT+TGG + chr2.1:21773262-21773281 None:intergenic 50.0%
AGGTGCCTTCATTGGTACAC+TGG + chr2.1:21773338-21773357 None:intergenic 50.0%
AGGTTGCAGTGGTCTCAGTA+GGG + chr2.1:21771656-21771675 None:intergenic 50.0%
AGTTGATCGCGAAAAAGGCG+AGG + chr2.1:21773128-21773147 None:intergenic 50.0%
CACATGGTACATAGAGGCCA+TGG - chr2.1:21772566-21772585 MS.gene060694:CDS 50.0%
TGGACTTCGACTGTGTGGTA+AGG + chr2.1:21772771-21772790 None:intergenic 50.0%
! GCCCCAAAGTTGGTTGATCA+AGG - chr2.1:21773580-21773599 MS.gene060694:intron 50.0%
! TACTGGTTAAGTGCAGGTCC+TGG - chr2.1:21773208-21773227 MS.gene060694:CDS 50.0%
!! TGCTTTGTTTGGTTTGGCGG+TGG - chr2.1:21772800-21772819 MS.gene060694:intron 50.0%
AAGGCAACCCAACTCACCAG+AGG + chr2.1:21771676-21771695 None:intergenic 55.0%
ACTGAGACCACTGCAACCTC+TGG - chr2.1:21771657-21771676 MS.gene060694:CDS 55.0%
CAACTCACCAGAGGTTGCAG+TGG + chr2.1:21771667-21771686 None:intergenic 55.0%
CACTGCAACCTCTGGTGAGT+TGG - chr2.1:21771665-21771684 MS.gene060694:CDS 55.0%
CTGACACGACACTACGCATG+TGG - chr2.1:21772066-21772085 MS.gene060694:intron 55.0%
GAGGTTGCAGTGGTCTCAGT+AGG + chr2.1:21771657-21771676 None:intergenic 55.0%


Chromosome Type Strat End Strand Name
chr2.1 gene 21771645 21774163 21771645 ID=MS.gene060694
chr2.1 mRNA 21771645 21774163 21771645 ID=MS.gene060694.t1;Parent=MS.gene060694
chr2.1 exon 21774130 21774163 21774130 ID=MS.gene060694.t1.exon1;Parent=MS.gene060694.t1
chr2.1 CDS 21774130 21774163 21774130 ID=cds.MS.gene060694.t1;Parent=MS.gene060694.t1
chr2.1 exon 21773912 21773964 21773912 ID=MS.gene060694.t1.exon2;Parent=MS.gene060694.t1
chr2.1 CDS 21773912 21773964 21773912 ID=cds.MS.gene060694.t1;Parent=MS.gene060694.t1
chr2.1 exon 21773190 21773365 21773190 ID=MS.gene060694.t1.exon3;Parent=MS.gene060694.t1
chr2.1 CDS 21773190 21773365 21773190 ID=cds.MS.gene060694.t1;Parent=MS.gene060694.t1
chr2.1 exon 21772075 21772748 21772075 ID=MS.gene060694.t1.exon4;Parent=MS.gene060694.t1
chr2.1 CDS 21772075 21772748 21772075 ID=cds.MS.gene060694.t1;Parent=MS.gene060694.t1
chr2.1 exon 21771645 21771742 21771645 ID=MS.gene060694.t1.exon5;Parent=MS.gene060694.t1
chr2.1 CDS 21771645 21771742 21771645 ID=cds.MS.gene060694.t1;Parent=MS.gene060694.t1
Gene Sequence

>MS.gene060694

ATGGGGAACCCTACTGAGACCACTGCAACCTCTGGTGAGTTGGGTTGCCTTCAGTTTTTGTGATCCTATTCTAATTTGAAACTTTAATGGTCTTGCTTTACTAGTTCATATTTTGGTTGAAACTTTAGTGATTATGAATGTATAATGTTCTTATTGTATATGTTTTGGCTAAATTTGTTTTCTTTCTTGGTGTGTATAGAGATTGAAATTGATAATGATTTTAAAGTTCACGTGTTCTCTTCATCATCTGAGGTGAGATTTTCAACCTTCACTTTTTTGTAGTACCATCTTATAATAATGATAGAATATTAGTGTCCTTCGATACATATAGCTGACTTTACCTAGTGGAATAAGAACTATGTAGCATCGGCACTTCATTTTGAAAATGTCTCTGGTGTCTGACATATGTCCTTATTTGACACTGACACGACACTACGCATGTGGTTACATTAAATCACTTCTATTTTCACAAATCATTACATGTGTCGTTCGTTCAATACATGTAGCTGACTTCACCTAGTGGAATAAGAATTATGTTGCATCGGCACTTCATTTTGGAAGTGTCTCTGGTGTCTGACATATGTCTTTATTTGACACGACACTACATATGTGATTACATTCAATCACTTCCATTTTCTCAAATCATTACCGATGTCTACGTGTTACCGTTTTAGTGTTAAGTGTCATATTCAGTGCTTCAAAAGATAAGGCGTGTTGTTTTTGTAGTTATATTATTTGATTAACTACTACAATCAGTAAATTAAAGTTTGCAAGTTTCATTGGCTTTACATTCTTCAGTTACTAGAAAAGCTTCATCAAACATGGAGTTCGGTGGAGAAACAACCATATCCAGCTATGTATTCTAGTGTATATGGAGGTATCATACTTGATCCAGCAATGATGGTAATCCCAATAGATGATCACATGGTACATAGAGGCCATGGCGTGTTTGATACTGCTATTATGTTTGAAGGGTAATACTAATTTTTGTTTTCTTTCTTGTAACAAAGCTTTGTTAAATCAAAAGTGGTTGGCCTGAAGTAGTTAAGCTTTAGTTAAGGTTGAATCACTTGGGGAGCACCCGAGTTCAATCCCTAACTGGAATAATTTTTGGTCAGACTTTCCTTACCACACAGTCGAAGTCCAGATTATTCTTGCTTTGTTTGGTTTGGCGGTGGAAACCCAATTCTCGCTTCCCAATGCATGATTTGCCGTGACTTTCTTGAAGCTGAGAATTGTAGAGTTAGACTTGCCGTGCTTTTGGCCATTCGTAACTTTTATCCAAACAGGCACTATGATTTATGTGCCCTTTTCCCCTATAGGAACTGTAGAGTTAAAAAAATGCATTATTGGTTTTACTTTGAATGTTCATATTTTTCTCTTATCTTGATATTTATGTTGTTTGTTTTCTCAAGACACCTCTATGAGTTGGATGTTCACCTTGACCGTTTCTTAAGATCAGCCTCAAAAGCAAAGATATCCTCGCCTTTTTCGCGATCAACTCTTCGCAGCATTCTAATACAACTAACGGCGGTATCAAAATTGAAGAAAGGAACTCTAAGATACTGGTTAAGTGCAGGTCCTGGAGATTTCTTACTGTCATCTTCAGGATGTCCAACACCTGCATTCTACGCAGTAGTCATTGATCATGATTTCTCTCAGTGCAAAGAAGGTGTCAAAGTGATTACTTCCAGTGTACCAATGAAGGCACCTTTATTTGCAACAATGAAAAATGTGAACTATCTTCCAAATGTACTTTCCGTATTAGAAGCTGAAGAGAAAGGTGCATTTGGTTCTATATGGATTGATGAGGTTGGTTATATTGCTGAAGGACCAAATGTGAATGTTGCTTTCATAACTCAAGAAAAGGAACTTGTTATGCCTTTTTTCGATAACATTCTATATGGTTGCACTGCTAAAAGGCTTCTTGAACTTGCCCCAAAGTTGGTTGATCAAGGTGTTCTAAAAAGTGTAACTACTAAAAATCTGACTGTGGATGAAGCTAGAGATGCTGTTGAAATGATGTATGTAGGAAGCACACTTCCTGTCTTGCCTATCATCATGTGGGATGATCAACCAATTGGTGATGGTAAGTTAATGGCAGAAATTATCTGTGTATATCTATCCTTGTTTGGCATGAAGCATTAACCTTTAAGCTTAATCGATATGAATCTCTAATATTGTTTATTTTCAATACGAGTCTCGTCTTGAATCTAGTCTCTTTATGTTGAATCTTGATTCATTCTGATGACGTTAGTAGATGAAATATGAACTTATAATTTTTCCGTCCCAATTATTTTTTACTTAAAAATTGTCATATTTCTATTAGTAATGTATCTTACGATTCATAATAAGATTCAATTCACGATTCGGAAAATAGGTCTTCTGATTCACAAATCTTGATTGTCTATGTTATTACAGGTAAGGTTGGAGAATTAACAATGTTACTTTCGGATTTGCTATGGGATGATATGGTAGCTGGCCCTGACACACAGAGAATACTTGTTCCTTATGTTTAA
Protein sequence

>MS.gene060694.t1

MGNPTETTATSEIEIDNDFKVHVFSSSSELLEKLHQTWSSVEKQPYPAMYSSVYGGIILDPAMMVIPIDDHMVHRGHGVFDTAIMFEGHLYELDVHLDRFLRSASKAKISSPFSRSTLRSILIQLTAVSKLKKGTLRYWLSAGPGDFLLSSSGCPTPAFYAVVIDHDFSQCKEGVKVITSSVPMKAPLFATMKNVNYLPNVLSVLEAEEKGAFGSIWIDEVGYIAEGPNVNVAFITQEKELVMPFFDNILYGCTAKRLLELAPKLVDQGVLKSVTTKNLTVDEARDAVEMMYVGSTLPVLPIIMWDDQPIGDGKVGELTMLLSDLLWDDMVAGPDTQRILVPYV