AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene58386

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene58386.t1 MTR_2g078310 90.426 188 1 1 1 171 31 218 1.68e-124 349
MS.gene58386.t1 MTR_3g117270 63.102 187 50 3 1 169 33 218 6.15e-84 246
MS.gene58386.t1 MTR_3g117270 62.778 180 48 3 1 162 33 211 3.56e-80 236
MS.gene58386.t1 MTR_3g117270 69.925 133 22 2 1 115 33 165 1.35e-64 196
MS.gene58386.t1 MTR_3g117280 51.613 186 69 3 1 169 15 196 1.76e-63 194
MS.gene58386.t1 MTR_3g117270 69.697 132 22 2 1 114 33 164 5.08e-63 191
MS.gene58386.t1 MTR_2g090365 58.385 161 47 3 1 142 291 450 2.47e-55 181
MS.gene58386.t1 MTR_5g097190 43.411 129 46 4 41 142 15 143 6.41e-26 101
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene58386.t1 AT4G22140 79.032 186 22 1 1 169 39 224 3.42e-108 308
MS.gene58386.t1 AT4G22140 78.771 179 21 1 1 162 39 217 9.89e-104 297
MS.gene58386.t1 AT4G22140 78.771 179 21 1 1 162 39 217 9.89e-104 297
MS.gene58386.t1 AT4G04260 65.922 179 42 3 1 161 1 178 7.44e-76 225
MS.gene58386.t1 AT4G04260 65.922 179 42 3 1 161 14 191 1.34e-75 225
MS.gene58386.t1 AT4G39100 59.783 184 54 3 1 166 31 212 1.95e-73 220
MS.gene58386.t1 AT4G39100 65.414 133 28 2 1 115 31 163 1.83e-58 180
MS.gene58386.t1 AT4G04260 74.312 109 26 1 1 107 32 140 2.01e-53 166

Find 46 sgRNAs with CRISPR-Local

Find 161 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATCGAAGAAGCAAAGAAAT+TGG 0.293372 2.3:+19467699 MS.gene58386:CDS
ATTAGGTCATCCGGGTTATA+AGG 0.334913 2.3:-19466982 None:intergenic
CTTCCACCAATAGATTCTTC+AGG 0.349796 2.3:-19466619 None:intergenic
CACTGCACCATTAGGTCATC+CGG 0.369370 2.3:-19466991 None:intergenic
CTATCAGATCCTGGTGATAC+AGG 0.385003 2.3:-19467784 None:intergenic
AACATTCAGAACAAACAAAA+TGG 0.403224 2.3:-19467723 None:intergenic
AGAAGATCGAGCAAGATAAT+AGG 0.403757 2.3:+19466560 MS.gene58386:CDS
GTTCTGAGGATTACTATTGT+AGG 0.415271 2.3:+19466767 MS.gene58386:CDS
ACCCTTCACACTGCACCATT+AGG 0.433071 2.3:-19466999 None:intergenic
GGTGGAAGAAGACAGTTTCA+TGG 0.437599 2.3:+19466634 MS.gene58386:CDS
CAAAGTGCTCACACTATTGA+AGG 0.439100 2.3:+19466694 MS.gene58386:CDS
TTATAACCCGGATGACCTAA+TGG 0.443180 2.3:+19466984 MS.gene58386:CDS
GGTCCTCTCTTTCGCCGCTT+CGG 0.470540 2.3:-19469359 None:intergenic
CTCACCTTGCTATCAGATCC+TGG 0.485170 2.3:-19467793 None:intergenic
CTTCTCCACACGTGCCACAT+AGG 0.490109 2.3:-19466542 None:intergenic
GAGCACTTTGAACATCAAAA+TGG 0.494985 2.3:-19466681 None:intergenic
TATAGACCTGAAGAATCTAT+TGG 0.496809 2.3:+19466613 MS.gene58386:CDS
TAGGTACCATCCTGCTTGTG+TGG 0.503860 2.3:+19467669 MS.gene58386:intron
TTCTCCACACGTGCCACATA+GGG 0.531360 2.3:-19466541 None:intergenic
GAGCCGAAGCGGCGAAAGAG+AGG 0.538999 2.3:+19469356 MS.gene58386:CDS
TATACTAAGCTTGAGAATGT+AGG 0.549874 2.3:+19466745 MS.gene58386:CDS
AAGACAGTTTCATGGAGCTA+AGG 0.559466 2.3:+19466642 MS.gene58386:CDS
GACCTAATGGTGCAGTGTGA+AGG 0.564361 2.3:+19466997 MS.gene58386:CDS
AAGATAATAGGAACAATGTG+AGG 0.571957 2.3:+19466572 MS.gene58386:CDS
GCTTGAGAATGTAGGTTCTG+AGG 0.572249 2.3:+19466753 MS.gene58386:CDS
ATAGTCATGCCCACACAAGC+AGG 0.572617 2.3:-19467679 None:intergenic
CACGAGTAAGCCACCCTATG+TGG 0.577004 2.3:+19466528 MS.gene58386:CDS
AGTGTGAAGGGTGCAAGGAT+TGG 0.587494 2.3:+19467010 MS.gene58386:CDS
GCCACCCTATGTGGCACGTG+TGG 0.588251 2.3:+19466537 MS.gene58386:CDS
ATGCGAGATGCCTTATAACC+CGG 0.597197 2.3:+19466972 MS.gene58386:CDS
TCCACACGTGCCACATAGGG+TGG 0.599622 2.3:-19466538 None:intergenic
AGACCTGAAGAATCTATTGG+TGG 0.602382 2.3:+19466616 MS.gene58386:CDS
ACCTAATGGTGCAGTGTGAA+GGG 0.605001 2.3:+19466998 MS.gene58386:CDS
ACTGCACCATTAGGTCATCC+GGG 0.612849 2.3:-19466990 None:intergenic
CGATGATTTGAAGAAACCAC+AGG 0.614767 2.3:+19467753 MS.gene58386:CDS
AGGTACCATCCTGCTTGTGT+GGG 0.617835 2.3:+19467670 MS.gene58386:intron
GCGGCGTTTCCTGTATCACC+AGG 0.621923 2.3:+19467775 MS.gene58386:CDS
ATCACCAGGATCTGATAGCA+AGG 0.624737 2.3:+19467789 MS.gene58386:CDS
ATGTGAGGGTTCGTGTGAGA+TGG 0.629136 2.3:+19466587 MS.gene58386:CDS
GATACAGGAAACGCCGCCTG+TGG 0.630270 2.3:-19467769 None:intergenic
GGTGGCTTACTCGTGTCAGA+AGG 0.633090 2.3:-19466520 None:intergenic
AAAGTGCTCACACTATTGAA+GGG 0.633847 2.3:+19466695 MS.gene58386:CDS
GGTGCAGTGTGAAGGGTGCA+AGG 0.638726 2.3:+19467005 MS.gene58386:CDS
AGATAATAGGAACAATGTGA+GGG 0.647787 2.3:+19466573 MS.gene58386:CDS
TCATGCCCACACAAGCAGGA+TGG 0.663384 2.3:-19467675 None:intergenic
TGATTTGAAGAAACCACAGG+CGG 0.754665 2.3:+19467756 MS.gene58386:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATCAAATTTACAAAAATTTA+CGG - chr2.3:19468583-19468602 None:intergenic 10.0%
!! CATATATTCTAATTAAAATT+TGG + chr2.3:19467984-19468003 MS.gene58386:intron 10.0%
!! TGAAAAAAAATAACATATAA+GGG + chr2.3:19468353-19468372 MS.gene58386:intron 10.0%
!! TTGAAAAAAAATAACATATA+AGG + chr2.3:19468352-19468371 MS.gene58386:intron 10.0%
!! TCAAATTTACAAAAATTTAC+GGG - chr2.3:19468582-19468601 None:intergenic 15.0%
!!! AAAGAATTTTGAGAAAAAAA+CGG - chr2.3:19468055-19468074 None:intergenic 15.0%
!!! ATTTAGTTCTAAATATTATG+AGG + chr2.3:19467837-19467856 MS.gene58386:intron 15.0%
!!! ATTTTGTGAGTAATAAATAA+TGG + chr2.3:19469170-19469189 MS.gene58386:intron 15.0%
!!! TCAAGTTTTTTATTCTTTTT+TGG + chr2.3:19469205-19469224 MS.gene58386:intron 15.0%
!! CAAATACTCAAAATTCAATT+AGG - chr2.3:19466886-19466905 None:intergenic 20.0%
!! TAATCAGTAGTTAATATCTA+GGG + chr2.3:19468660-19468679 MS.gene58386:intron 20.0%
!! TACCTTTCATAAAATATAGA+AGG - chr2.3:19467624-19467643 None:intergenic 20.0%
!! TTATAATTAACAATCAACCT+TGG + chr2.3:19467371-19467390 MS.gene58386:intron 20.0%
!! TTATATTTAAGCTTATCTGA+TGG + chr2.3:19468699-19468718 MS.gene58386:intron 20.0%
!!! AATTTTAGCTCTTGTATTAA+CGG - chr2.3:19467353-19467372 None:intergenic 20.0%
!!! ACATAATCTCTTTTAATCAA+TGG + chr2.3:19469228-19469247 MS.gene58386:intron 20.0%
!!! ACCACATTTAAAATTTGTAA+AGG - chr2.3:19468176-19468195 None:intergenic 20.0%
!!! ACCTTTACAAATTTTAAATG+TGG + chr2.3:19468172-19468191 MS.gene58386:intron 20.0%
!!! ATTATTTTGATTGACACTAT+AGG + chr2.3:19469274-19469293 MS.gene58386:intron 20.0%
!!! GCAAAAGATTATTGAATTTT+TGG + chr2.3:19467549-19467568 MS.gene58386:intron 20.0%
!!! GTTGTTTTTATAAGCAATAT+TGG - chr2.3:19468816-19468835 None:intergenic 20.0%
!!! GTTTATTTTTTCCAATCTAT+AGG + chr2.3:19467481-19467500 MS.gene58386:intron 20.0%
!!! TGAGTGATTTTTAGTTTTTT+CGG + chr2.3:19467068-19467087 MS.gene58386:intron 20.0%
!!! TTCCTTCTATATTTTATGAA+AGG + chr2.3:19467619-19467638 MS.gene58386:intron 20.0%
!!! TTTTGAATAATTTGCTGATT+TGG + chr2.3:19466923-19466942 MS.gene58386:intron 20.0%
!!! TTTTGATGAATGAATATATG+TGG + chr2.3:19467123-19467142 MS.gene58386:intron 20.0%
! AACATTCAGAACAAACAAAA+TGG - chr2.3:19467726-19467745 None:intergenic 25.0%
! AATCAGTAGTTAATATCTAG+GGG + chr2.3:19468661-19468680 MS.gene58386:intron 25.0%
! AATGCTGCAATATGATTAAA+AGG + chr2.3:19468122-19468141 MS.gene58386:intron 25.0%
! ACTTAATAAAACATCTCCTT+AGG - chr2.3:19467196-19467215 None:intergenic 25.0%
! ATGCTGCAATATGATTAAAA+GGG + chr2.3:19468123-19468142 MS.gene58386:intron 25.0%
! ATTGACATCAGAAATTATCT+AGG + chr2.3:19468277-19468296 MS.gene58386:intron 25.0%
! CTTAATAAAACATCTCCTTA+GGG - chr2.3:19467195-19467214 None:intergenic 25.0%
! GTAATCAGTAGTTAATATCT+AGG + chr2.3:19468659-19468678 MS.gene58386:intron 25.0%
! TACCAAGGTAAAAGATAAAA+CGG - chr2.3:19468465-19468484 None:intergenic 25.0%
! TGTAATACATTCTCTGTTAT+TGG + chr2.3:19467224-19467243 MS.gene58386:intron 25.0%
! TGTGAAATATAGTTCGAAAA+AGG - chr2.3:19468514-19468533 None:intergenic 25.0%
! TTGTGAGTAATAAATAATGG+AGG + chr2.3:19469173-19469192 MS.gene58386:intron 25.0%
! TTTAATCATATTGCAGCATT+AGG - chr2.3:19468122-19468141 None:intergenic 25.0%
! TTTGAGTATTTGAATTGATG+AGG + chr2.3:19466894-19466913 MS.gene58386:intron 25.0%
!! ATTCTAACAATTTGAAGCTT+TGG + chr2.3:19469039-19469058 MS.gene58386:intron 25.0%
!! GGATAGAGTTTAAAACAAAA+GGG - chr2.3:19468444-19468463 None:intergenic 25.0%
!! TGGCTTTTACAAGAAAATAA+AGG - chr2.3:19469137-19469156 None:intergenic 25.0%
!! TTGGTGATCTGATAAAATAA+GGG + chr2.3:19469063-19469082 MS.gene58386:intron 25.0%
!! TTTGGTGATCTGATAAAATA+AGG + chr2.3:19469062-19469081 MS.gene58386:intron 25.0%
!!! AAATGTGGTTTTGATATCTA+TGG + chr2.3:19468187-19468206 MS.gene58386:intron 25.0%
!!! ATATGCTATATTGGCTTTTT+AGG + chr2.3:19467587-19467606 MS.gene58386:intron 25.0%
!!! ATGCTTTAGCTTTTTGTTTT+TGG + chr2.3:19466849-19466868 MS.gene58386:intron 25.0%
AAATATAAGCCAATCCAAAC+AGG - chr2.3:19468687-19468706 None:intergenic 30.0%
AAGATAATAGGAACAATGTG+AGG + chr2.3:19466572-19466591 MS.gene58386:CDS 30.0%
ACAAAATGAACACTGCTTAA+TGG - chr2.3:19469157-19469176 None:intergenic 30.0%
AGATAATAGGAACAATGTGA+GGG + chr2.3:19466573-19466592 MS.gene58386:CDS 30.0%
ATTGTGTGTTTCTTCATTCT+TGG + chr2.3:19468011-19468030 MS.gene58386:intron 30.0%
CACTACCAAAAGATCATTTA+GGG - chr2.3:19468976-19468995 None:intergenic 30.0%
GAAATATAGTTCGAAAAAGG+AGG - chr2.3:19468511-19468530 None:intergenic 30.0%
TATACTAAGCTTGAGAATGT+AGG + chr2.3:19466745-19466764 MS.gene58386:CDS 30.0%
TATAGACCTGAAGAATCTAT+TGG + chr2.3:19466613-19466632 MS.gene58386:CDS 30.0%
TATCGAAGAAGCAAAGAAAT+TGG + chr2.3:19467699-19467718 MS.gene58386:CDS 30.0%
TGAGAAGTCATATGCTATAT+TGG + chr2.3:19467578-19467597 MS.gene58386:intron 30.0%
TGGTGATCTGATAAAATAAG+GGG + chr2.3:19469064-19469083 MS.gene58386:intron 30.0%
TTATGTCAAACAACTCAAAC+AGG - chr2.3:19468629-19468648 None:intergenic 30.0%
! AAAGACCCTAAATGATCTTT+TGG + chr2.3:19468968-19468987 MS.gene58386:intron 30.0%
! AACAATTTGAAGCTTTGGTT+TGG + chr2.3:19469044-19469063 MS.gene58386:intron 30.0%
! ATCCGTTTTATCTTTTACCT+TGG + chr2.3:19468460-19468479 MS.gene58386:intron 30.0%
! CGGATAGAGTTTAAAACAAA+AGG - chr2.3:19468445-19468464 None:intergenic 30.0%
! TATCTGATGGCATAAGTTTT+GGG + chr2.3:19468712-19468731 MS.gene58386:intron 30.0%
! TCAAGCATTGTTCATAATCA+AGG - chr2.3:19469324-19469343 None:intergenic 30.0%
! TCATTTTGTAGGTTTCTTGT+AGG + chr2.3:19467650-19467669 MS.gene58386:intron 30.0%
! TTATCTGATGGCATAAGTTT+TGG + chr2.3:19468711-19468730 MS.gene58386:intron 30.0%
!! AAGATCATTTAGGGTCTTTT+CGG - chr2.3:19468967-19468986 None:intergenic 30.0%
!! ATTTTAGCATTTGGATGTGT+TGG + chr2.3:19467097-19467116 MS.gene58386:intron 30.0%
!! CGGTATCTAATTTTAGCATT+TGG + chr2.3:19467088-19467107 MS.gene58386:intron 30.0%
ACTTTAACTGAACAAGCAGA+AGG - chr2.3:19467275-19467294 None:intergenic 35.0%
AGAAGATCGAGCAAGATAAT+AGG + chr2.3:19466560-19466579 MS.gene58386:CDS 35.0%
ATAAAACTCACACAGCAACA+CGG - chr2.3:19466831-19466850 None:intergenic 35.0%
ATAAGTCGAAATGAAACTGC+TGG + chr2.3:19467404-19467423 MS.gene58386:intron 35.0%
ATCAAGCACAAGAATTACCA+AGG - chr2.3:19468480-19468499 None:intergenic 35.0%
CCACTACCAAAAGATCATTT+AGG - chr2.3:19468977-19468996 None:intergenic 35.0%
CGAGATAAATGCTGGAAATA+GGG + chr2.3:19467304-19467323 MS.gene58386:intron 35.0%
CTCAAACAGGTTATCAATAG+CGG - chr2.3:19468616-19468635 None:intergenic 35.0%
GACTTATGAAAAACGATCCA+AGG - chr2.3:19467391-19467410 None:intergenic 35.0%
GAGCACTTTGAACATCAAAA+TGG - chr2.3:19466684-19466703 None:intergenic 35.0%
TAAGTCGAAATGAAACTGCT+GGG + chr2.3:19467405-19467424 MS.gene58386:intron 35.0%
TCAAACAGGTTATCAATAGC+GGG - chr2.3:19468615-19468634 None:intergenic 35.0%
TCGAGATAAATGCTGGAAAT+AGG + chr2.3:19467303-19467322 MS.gene58386:intron 35.0%
TTTCTTCATTCTTGGTACCA+TGG + chr2.3:19468019-19468038 MS.gene58386:intron 35.0%
TTTGAGTATAAAGCTGCTAC+TGG + chr2.3:19466790-19466809 MS.gene58386:intron 35.0%
! AAAGTGCTCACACTATTGAA+GGG + chr2.3:19466695-19466714 MS.gene58386:CDS 35.0%
! AGGTACACACTTCATTTTGT+AGG + chr2.3:19467639-19467658 MS.gene58386:intron 35.0%
! CCTAAATGATCTTTTGGTAG+TGG + chr2.3:19468974-19468993 MS.gene58386:intron 35.0%
! GAACAATGCTTGAATTTTGC+AGG + chr2.3:19469331-19469350 MS.gene58386:intron 35.0%
! TTTATCGTTCTTCTAAGAGC+TGG - chr2.3:19467154-19467173 None:intergenic 35.0%
!! AGAGTTGATGACCTATAGAT+TGG - chr2.3:19467495-19467514 None:intergenic 35.0%
!! GTTCTGAGGATTACTATTGT+AGG + chr2.3:19466767-19466786 MS.gene58386:CDS 35.0%
!! TATGAGGCATTCTTTTGCTT+TGG + chr2.3:19467853-19467872 MS.gene58386:intron 35.0%
!!! ATAAGTTTTGGGAGTCTGTT+TGG + chr2.3:19468723-19468742 MS.gene58386:intron 35.0%
!!! TAAGTTTTGGGAGTCTGTTT+GGG + chr2.3:19468724-19468743 MS.gene58386:intron 35.0%
AAAGCGATCGAGATAAATGC+TGG + chr2.3:19467296-19467315 MS.gene58386:intron 40.0%
AAGACAGTTTCATGGAGCTA+AGG + chr2.3:19466642-19466661 MS.gene58386:CDS 40.0%
AAGTCGAAATGAAACTGCTG+GGG + chr2.3:19467406-19467425 MS.gene58386:intron 40.0%
AATGCTCTACTACTGAGCTA+TGG + chr2.3:19468417-19468436 MS.gene58386:intron 40.0%
AGACCTGAAGAATCTATTGG+TGG + chr2.3:19466616-19466635 MS.gene58386:CDS 40.0%
ATAACATATAAGGGCCCAAC+CGG + chr2.3:19468362-19468381 MS.gene58386:intron 40.0%
ATTAGGTCATCCGGGTTATA+AGG - chr2.3:19466985-19467004 None:intergenic 40.0%
CGATGATTTGAAGAAACCAC+AGG + chr2.3:19467753-19467772 MS.gene58386:CDS 40.0%
CTTCCACCAATAGATTCTTC+AGG - chr2.3:19466622-19466641 None:intergenic 40.0%
GCATTTGACTGCAGATCAAA+AGG - chr2.3:19468402-19468421 None:intergenic 40.0%
TGAACAAAGACTTAGCCCTA+AGG + chr2.3:19467177-19467196 MS.gene58386:intron 40.0%
TGATTTGAAGAAACCACAGG+CGG + chr2.3:19467756-19467775 MS.gene58386:CDS 40.0%
TTAATATCTAGGGGCCTGTT+TGG + chr2.3:19468670-19468689 MS.gene58386:intron 40.0%
TTATAACCCGGATGACCTAA+TGG + chr2.3:19466984-19467003 MS.gene58386:CDS 40.0%
TTTGCTTTGGCCCTTTGATA+CGG + chr2.3:19467866-19467885 MS.gene58386:intron 40.0%
! CAAAGTGCTCACACTATTGA+AGG + chr2.3:19466694-19466713 MS.gene58386:CDS 40.0%
! CAATGCTTGAATTTTGCAGG+TGG + chr2.3:19469334-19469353 MS.gene58386:intron 40.0%
! GCTCAAAGTCGAGATCTTTT+AGG - chr2.3:19467455-19467474 None:intergenic 40.0%
!! AAAACGGATTACGCTAACCA+TGG - chr2.3:19468039-19468058 None:intergenic 40.0%
ACCTAATGGTGCAGTGTGAA+GGG + chr2.3:19466998-19467017 MS.gene58386:CDS 45.0%
ACTGCAGATCAAAAGGTCAC+CGG - chr2.3:19468395-19468414 None:intergenic 45.0%
ATCACCAGGATCTGATAGCA+AGG + chr2.3:19467789-19467808 MS.gene58386:CDS 45.0%
ATGCGAGATGCCTTATAACC+CGG + chr2.3:19466972-19466991 MS.gene58386:CDS 45.0%
CTATCAGATCCTGGTGATAC+AGG - chr2.3:19467787-19467806 None:intergenic 45.0%
CTGTGATAGCCCGTATCAAA+GGG - chr2.3:19467879-19467898 None:intergenic 45.0%
CTGTTATTGGAACTCTGTCC+TGG + chr2.3:19467237-19467256 MS.gene58386:intron 45.0%
GCTTGAGAATGTAGGTTCTG+AGG + chr2.3:19466753-19466772 MS.gene58386:CDS 45.0%
GGTGGAAGAAGACAGTTTCA+TGG + chr2.3:19466634-19466653 MS.gene58386:CDS 45.0%
TAACATATAAGGGCCCAACC+GGG + chr2.3:19468363-19468382 MS.gene58386:intron 45.0%
TCTGTGATAGCCCGTATCAA+AGG - chr2.3:19467880-19467899 None:intergenic 45.0%
TTGCTTTGGCCCTTTGATAC+GGG + chr2.3:19467867-19467886 MS.gene58386:intron 45.0%
AACTCACACAGCAACACGGT+CGG - chr2.3:19466827-19466846 None:intergenic 50.0%
ACCCTTCACACTGCACCATT+AGG - chr2.3:19467002-19467021 None:intergenic 50.0%
ACTGCACCATTAGGTCATCC+GGG - chr2.3:19466993-19467012 None:intergenic 50.0%
AGGTACCATCCTGCTTGTGT+GGG + chr2.3:19467670-19467689 MS.gene58386:intron 50.0%
ATAGTCATGCCCACACAAGC+AGG - chr2.3:19467682-19467701 None:intergenic 50.0%
ATCTAGGGGCCTGTTTGGAT+TGG + chr2.3:19468675-19468694 MS.gene58386:intron 50.0%
ATGTGAGGGTTCGTGTGAGA+TGG + chr2.3:19466587-19466606 MS.gene58386:CDS 50.0%
CACTGCACCATTAGGTCATC+CGG - chr2.3:19466994-19467013 None:intergenic 50.0%
GACCTAATGGTGCAGTGTGA+AGG + chr2.3:19466997-19467016 MS.gene58386:CDS 50.0%
TAGGTACCATCCTGCTTGTG+TGG + chr2.3:19467669-19467688 MS.gene58386:intron 50.0%
TTCTCCACACGTGCCACATA+GGG - chr2.3:19466544-19466563 None:intergenic 50.0%
! AGTGTGAAGGGTGCAAGGAT+TGG + chr2.3:19467010-19467029 MS.gene58386:CDS 50.0%
! CAAGCAGAAGGCTTTGTCCT+AGG - chr2.3:19467263-19467282 None:intergenic 50.0%
! CTCACCTTGCTATCAGATCC+TGG - chr2.3:19467796-19467815 None:intergenic 50.0%
!! AAAGGTCACCGGTTCAAACC+CGG - chr2.3:19468384-19468403 None:intergenic 50.0%
ACTCACACAGCAACACGGTC+GGG - chr2.3:19466826-19466845 None:intergenic 55.0%
CACGAGTAAGCCACCCTATG+TGG + chr2.3:19466528-19466547 MS.gene58386:CDS 55.0%
CTTCTCCACACGTGCCACAT+AGG - chr2.3:19466545-19466564 None:intergenic 55.0%
GGTGGCTTACTCGTGTCAGA+AGG - chr2.3:19466523-19466542 None:intergenic 55.0%
TCATGCCCACACAAGCAGGA+TGG - chr2.3:19467678-19467697 None:intergenic 55.0%
TTGGAACTCTGTCCTGGCCT+AGG + chr2.3:19467243-19467262 MS.gene58386:intron 55.0%
! AGAAGGCTTTGTCCTAGGCC+AGG - chr2.3:19467258-19467277 None:intergenic 55.0%
! TTTTGCAGGTGGAGCCGAAG+CGG + chr2.3:19469345-19469364 MS.gene58386:intron 55.0%
!! TCACCGGTTCAAACCCGGTT+GGG - chr2.3:19468379-19468398 None:intergenic 55.0%
GATACAGGAAACGCCGCCTG+TGG - chr2.3:19467772-19467791 None:intergenic 60.0%
GCGGCGTTTCCTGTATCACC+AGG + chr2.3:19467775-19467794 MS.gene58386:CDS 60.0%
GGTCCTCTCTTTCGCCGCTT+CGG - chr2.3:19469362-19469381 None:intergenic 60.0%
TCCACACGTGCCACATAGGG+TGG - chr2.3:19466541-19466560 None:intergenic 60.0%
! GGTGCAGTGTGAAGGGTGCA+AGG + chr2.3:19467005-19467024 MS.gene58386:CDS 60.0%
!! GTCACCGGTTCAAACCCGGT+TGG - chr2.3:19468380-19468399 None:intergenic 60.0%
GAGCCGAAGCGGCGAAAGAG+AGG + chr2.3:19469356-19469375 MS.gene58386:CDS 65.0%
GCCACCCTATGTGGCACGTG+TGG + chr2.3:19466537-19466556 MS.gene58386:CDS 65.0%
GGGCCCAACCGGGTTTGAAC+CGG + chr2.3:19468373-19468392 MS.gene58386:intron 65.0%


Chromosome Type Strat End Strand Name
chr2.3 gene 19466514 19469385 19466514 ID=MS.gene58386
chr2.3 mRNA 19466514 19469385 19466514 ID=MS.gene58386.t1;Parent=MS.gene58386
chr2.3 exon 19466514 19466788 19466514 ID=MS.gene58386.t1.exon1;Parent=MS.gene58386.t1
chr2.3 CDS 19466514 19466788 19466514 ID=cds.MS.gene58386.t1;Parent=MS.gene58386.t1
chr2.3 exon 19466963 19467031 19466963 ID=MS.gene58386.t1.exon2;Parent=MS.gene58386.t1
chr2.3 CDS 19466963 19467031 19466963 ID=cds.MS.gene58386.t1;Parent=MS.gene58386.t1
chr2.3 exon 19467672 19467810 19467672 ID=MS.gene58386.t1.exon3;Parent=MS.gene58386.t1
chr2.3 CDS 19467672 19467810 19467672 ID=cds.MS.gene58386.t1;Parent=MS.gene58386.t1
chr2.3 exon 19469353 19469385 19469353 ID=MS.gene58386.t1.exon4;Parent=MS.gene58386.t1
chr2.3 CDS 19469353 19469385 19469353 ID=cds.MS.gene58386.t1;Parent=MS.gene58386.t1
Gene Sequence

>MS.gene58386

ATGCGTCCTTCTGACACGAGTAAGCCACCCTATGTGGCACGTGTGGAGAAGATCGAGCAAGATAATAGGAACAATGTGAGGGTTCGTGTGAGATGGTATTATAGACCTGAAGAATCTATTGGTGGAAGAAGACAGTTTCATGGAGCTAAGGAACTGTTTTTATCTGACCATTTTGATGTTCAAAGTGCTCACACTATTGAAGGGAAATGCATTGTTCACTCTTTCAAGAACTATACTAAGCTTGAGAATGTAGGTTCTGAGGATTACTATTGTAGGTTTGAGTATAAAGCTGCTACTGGTGCTTTCACTCCCGACCGTGTTGCTGTGTGAGTTTTATGCTTTAGCTTTTTGTTTTTGGTTCTTGATTTTCCTAATTGAATTTTGAGTATTTGAATTGATGAGGTTTGTTTTTTGAATAATTTGCTGATTTGGTTTTTGTGTTTTTGTAGATACTGCAAATGCGAGATGCCTTATAACCCGGATGACCTAATGGTGCAGTGTGAAGGGTGCAAGGATTGGTAAAATCAGAGTATATTCTGTGTTTGTTTAGTTTTTGAGTGATTTTTAGTTTTTTCGGTATCTAATTTTAGCATTTGGATGTGTTGGTTGTTTTGATGAATGAATATATGTGGATATTCCAGCTCTTAGAAGAACGATAAAGATTGAACAAAGACTTAGCCCTAAGGAGATGTTTTATTAAGTTCAATAGTTGTAATACATTCTCTGTTATTGGAACTCTGTCCTGGCCTAGGACAAAGCCTTCTGCTTGTTCAGTTAAAGTAAAAGCGATCGAGATAAATGCTGGAAATAGGGAGCATGAACATATAAAAGATTTTCCGTTAATACAAGAGCTAAAATTATAATTAACAATCAACCTTGGATCGTTTTTCATAAGTCGAAATGAAACTGCTGGGGTCTTTATATCTTCTGTTTGTTGACCTAAAAGATCTCGACTTTGAGCTTAATTGTTTATTTTTTCCAATCTATAGGTCATCAACTCTTGCTGAACTTATTTAGCATAATGCTTAAATCATCGCAAAAGATTATTGAATTTTTGGAACATCTGAGAAGTCATATGCTATATTGGCTTTTTAGGCGTATGTATTTCCTTCTATATTTTATGAAAGGTACACACTTCATTTTGTAGGTTTCTTGTAGGTACCATCCTGCTTGTGTGGGCATGACTATCGAAGAAGCAAAGAAATTGGACCATTTTGTTTGTTCTGAATGTTCATCTGACGATGATTTGAAGAAACCACAGGCGGCGTTTCCTGTATCACCAGGATCTGATAGCAAGGTGAGATAAATCAGATAACTACATGAATTTAGTTCTAAATATTATGAGGCATTCTTTTGCTTTGGCCCTTTGATACGGGCTATCACAGAATGCTGCTTCATGTGTAGAAAATGAATGTTCGAGTTTTGAACTGATTCATGTATTCTAATTAAAATTTGAGTTTTGAAATGATTCATATATTCTAATTAAAATTTGGTTGAATTGTGTGTTTCTTCATTCTTGGTACCATGGTTAGCGTAATCCGTTTTTTTCTCAAAATTCTTTTTCGTTTTTACTGAAATATGCTACAAAGTGTAATTAGTTGAAGACCTAATGCTGCAATATGATTAAAAGGGAATCATACATTTTATTGCTTAGAAACACCTTTACAAATTTTAAATGTGGTTTTGATATCTATGGTTATGTTTGTGTTAGCTCACGTCTCGAGTTTTGATGTACTCTTTTTAAAAAAAGCTTATGCAAATGTATTGACATCAGAAATTATCTAGGCATAAAAAAATATGAAATGAATTTTTTTGTGATTTTCAGAGATTAAAAAGAATTGAAAAAAAATAACATATAAGGGCCCAACCGGGTTTGAACCGGTGACCTTTTGATCTGCAGTCAAATGCTCTACTACTGAGCTATGGACCCTTTTGTTTTAAACTCTATCCGTTTTATCTTTTACCTTGGTAATTCTTGTGCTTGATGAACTTATCCTCCTTTTTCGAACTATATTTCACAAAATATGTGTACTTTATTCTGTCTATTTTCATAAGATTTAATAAGCCCGTAAATTTTTGTAAATTTGATTTTATCGTGCCCGCTATTGATAACCTGTTTGAGTTGTTTGACATAAGTTGTGACTTGTAATCAGTAGTTAATATCTAGGGGCCTGTTTGGATTGGCTTATATTTAAGCTTATCTGATGGCATAAGTTTTGGGAGTCTGTTTGGGAGAACTTATGAAAATAGCTTACAACAATTTTCATAAGCTTTTCTCAACTTATTTTCTTTAAGTTCTCCAATATTGCTTATAAAAACAACTTATAGCGTATACAGAACAATTTAACATTTTTTTTTATCTTTTTCTATAAAAATAGTTTATGCAAGCTTATACATAAGCGCTTATAATGATAAGTGCTTGTGCTATAAGCTGCAAATAAGTTGTTTATCCGAAAAGACCCTAAATGATCTTTTGGTAGTGGTTTTTCTTTCAAAGTGTTTTTCAAAGCTAATTATGTAATTGAATTCTAACAATTTGAAGCTTTGGTTTGGTGATCTGATAAAATAAGGGGCTGTCTTTGCATACAACATATTGTATTTGTGTTTGTTGAAATTGTTGCCTTTATTTTCTTGTAAAAGCCATTAAGCAGTGTTCATTTTGTGAGTAATAAATAATGGAGGAAATTTTAGTCAAGTTTTTTATTCTTTTTTGGACATAATCTCTTTTAATCAATGGTATGTTTGAGTGTTAAGATTTTAATTATTTTGATTGACACTATAGGATTGTGTGATTGCAAACATGTTTTCCTTGATTATGAACAATGCTTGAATTTTGCAGGTGGAGCCGAAGCGGCGAAAGAGAGGACCATGA
Protein sequence

>MS.gene58386.t1

MRPSDTSKPPYVARVEKIEQDNRNNVRVRVRWYYRPEESIGGRRQFHGAKELFLSDHFDVQSAHTIEGKCIVHSFKNYTKLENVGSEDYYCRYCKCEMPYNPDDLMVQCEGCKDWYHPACVGMTIEEAKKLDHFVCSECSSDDDLKKPQAAFPVSPGSDSKVEPKRRKRGP