Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene58430.t1 | RHN63664.1 | 77 | 200 | 35 | 2 | 1 | 189 | 1 | 200 | 3.30E-74 | 288.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene58430.t1 | Q8L557 | 68.6 | 105 | 33 | 0 | 69 | 173 | 65 | 169 | 1.1e-38 | 161.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene58430.t1 | A0A396IHA6 | 77.0 | 200 | 35 | 2 | 1 | 189 | 1 | 200 | 2.4e-74 | 288.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049825 | MS.gene58430 | 0.808358 | 3.22E-50 | -1.69E-46 |
| MS.gene049873 | MS.gene58430 | 0.816693 | 4.85E-52 | -1.69E-46 |
| MS.gene055778 | MS.gene58430 | 0.802031 | 6.80E-49 | -1.69E-46 |
| MS.gene055808 | MS.gene58430 | 0.81024 | 1.27E-50 | -1.69E-46 |
| MS.gene056498 | MS.gene58430 | 0.812236 | 4.69E-51 | -1.69E-46 |
| MS.gene057060 | MS.gene58430 | 0.808763 | 2.64E-50 | -1.69E-46 |
| MS.gene057693 | MS.gene58430 | 0.800555 | 1.36E-48 | -1.69E-46 |
| MS.gene05953 | MS.gene58430 | 0.808619 | 2.83E-50 | -1.69E-46 |
| MS.gene05954 | MS.gene58430 | 0.834912 | 2.28E-56 | -1.69E-46 |
| MS.gene060429 | MS.gene58430 | 0.809938 | 1.48E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene58430.t1 | MTR_0140s0050 | 75.648 | 193 | 10 | 4 | 1 | 182 | 1 | 167 | 3.15e-88 | 258 |
| MS.gene58430.t1 | MTR_3g435580 | 51.759 | 199 | 79 | 3 | 1 | 182 | 1 | 199 | 6.86e-60 | 187 |
| MS.gene58430.t1 | MTR_2g094530 | 50.980 | 102 | 44 | 2 | 20 | 116 | 36 | 136 | 1.92e-21 | 86.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene58430.t1 | AT5G62440 | 66.129 | 124 | 36 | 2 | 51 | 174 | 53 | 170 | 7.38e-53 | 169 |
Find 47 sgRNAs with CRISPR-Local
Find 180 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACCATCAGGTCCTGTGAAAT+TGG | 0.210319 | 8.3:-15899097 | MS.gene58430:CDS |
| GCAAGTGTTTCTTTCTCATT+AGG | 0.216772 | 8.3:-15897477 | MS.gene58430:CDS |
| ATGTCTACAGCGACGATTTC+TGG | 0.267784 | 8.3:+15899270 | None:intergenic |
| CAAAACTTTCGGCTCTTCTT+TGG | 0.271810 | 8.3:-15899070 | MS.gene58430:CDS |
| TGTTTCACTTGCATTGCTTC+TGG | 0.296516 | 8.3:+15897394 | None:intergenic |
| AACAGAGCATTGGGTGGTTC+TGG | 0.319267 | 8.3:-15897364 | MS.gene58430:CDS |
| CAAGTGTTTCTTTCTCATTA+GGG | 0.357081 | 8.3:-15897476 | MS.gene58430:CDS |
| GCCAGAGATGACGACGAAAA+AGG | 0.358142 | 8.3:-15899171 | MS.gene58430:CDS |
| ATCTCTGGCACGCTTCTGAT+TGG | 0.363015 | 8.3:+15899185 | None:intergenic |
| CACTCACTGCACTCAATGTC+TGG | 0.374977 | 8.3:+15897276 | None:intergenic |
| AAATTGGGTTACAAAACTTT+CGG | 0.375837 | 8.3:-15899081 | MS.gene58430:CDS |
| ATGTAGGATGCTTGCGAACT+TGG | 0.378769 | 8.3:+15897506 | None:intergenic |
| GAATATGATCCACACATTTA+CGG | 0.416271 | 8.3:+15897425 | None:intergenic |
| CATCGAGGTGCTGGTGGAAG+AGG | 0.436207 | 8.3:-15897331 | MS.gene58430:CDS |
| CCATCAGGTCCTGTGAAATT+GGG | 0.448379 | 8.3:-15899096 | MS.gene58430:CDS |
| CACTTGCATTGCTTCTGGCA+AGG | 0.456631 | 8.3:+15897399 | None:intergenic |
| CATGATGCAAACAGAGCATT+GGG | 0.462963 | 8.3:-15897373 | MS.gene58430:CDS |
| ACCTTGTTAACATTAAGATT+AGG | 0.475911 | 8.3:+15899006 | None:intergenic |
| ACTTGCATTGCTTCTGGCAA+GGG | 0.488485 | 8.3:+15897400 | None:intergenic |
| ACAGCGACGATTTCTGGTTC+CGG | 0.491379 | 8.3:+15899276 | None:intergenic |
| CCCAATTTCACAGGACCTGA+TGG | 0.504047 | 8.3:+15899096 | None:intergenic |
| AAAAGAAAGCATCGAGGTGC+TGG | 0.509151 | 8.3:-15897340 | MS.gene58430:CDS |
| TTACTAGAATTGCTTATGAA+AGG | 0.517998 | 8.3:-15897574 | MS.gene58430:CDS |
| GAAGAAGAGATGAAACCATC+AGG | 0.518223 | 8.3:-15899111 | MS.gene58430:CDS |
| AATGACGGAAACCGCTGCAC+CGG | 0.523742 | 8.3:-15899295 | MS.gene58430:CDS |
| GCAAAAGGTGGAAGCAGAGG+TGG | 0.532733 | 8.3:-15899136 | MS.gene58430:CDS |
| AGGTGTTTCCAAGAAGCAAA+AGG | 0.542393 | 8.3:-15899151 | MS.gene58430:CDS |
| AAGTTCGCAAGCATCCTACA+TGG | 0.544290 | 8.3:-15897504 | MS.gene58430:CDS |
| ACATGATGCAAACAGAGCAT+TGG | 0.559557 | 8.3:-15897374 | MS.gene58430:CDS |
| GAAGCAAAAGGTGGAAGCAG+AGG | 0.563614 | 8.3:-15899139 | MS.gene58430:CDS |
| CGAGGTGCTGGTGGAAGAGG+AGG | 0.573526 | 8.3:-15897328 | MS.gene58430:CDS |
| TCCTAATCTTAATGTTAACA+AGG | 0.576772 | 8.3:-15899007 | MS.gene58430:intron |
| AGGAGGTACACATGGACGTG+GGG | 0.584945 | 8.3:-15897311 | MS.gene58430:CDS |
| TATTGAAAACGCTGAACTCG+CGG | 0.587289 | 8.3:-15899244 | MS.gene58430:CDS |
| GTGTTTCTTTCTCATTAGGG+AGG | 0.599803 | 8.3:-15897473 | MS.gene58430:CDS |
| GAGGAGGTACACATGGACGT+GGG | 0.602359 | 8.3:-15897312 | MS.gene58430:CDS |
| GATTTCTGGTTCCGGTGCAG+CGG | 0.603810 | 8.3:+15899284 | None:intergenic |
| AGAAATCGTCGCTGTAGACA+TGG | 0.605806 | 8.3:-15899268 | MS.gene58430:CDS |
| AGAAAGCATCGAGGTGCTGG+TGG | 0.622028 | 8.3:-15897337 | MS.gene58430:CDS |
| AGAGGAGGTACACATGGACG+TGG | 0.625090 | 8.3:-15897313 | MS.gene58430:CDS |
| GGAGGTACACATGGACGTGG+GGG | 0.649144 | 8.3:-15897310 | MS.gene58430:CDS |
| TGTTTCCAAGAAGCAAAAGG+TGG | 0.653047 | 8.3:-15899148 | MS.gene58430:CDS |
| GGTGGAAGAGGAGGTACACA+TGG | 0.663515 | 8.3:-15897319 | MS.gene58430:CDS |
| GATGCAAACAGAGCATTGGG+TGG | 0.682793 | 8.3:-15897370 | MS.gene58430:CDS |
| TGAAAACGCTGAACTCGCGG+AGG | 0.694646 | 8.3:-15899241 | MS.gene58430:CDS |
| TGAACTCGCGGAGGTTAACG+CGG | 0.696148 | 8.3:-15899232 | MS.gene58430:CDS |
| TCTGGTAAAAGAAAGCATCG+AGG | 0.799067 | 8.3:-15897346 | MS.gene58430:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAAGAATATCTTATTA+CGG | - | chr8.3:15897729-15897748 | MS.gene58430:intron | 10.0% |
| !! | AAATCTCAATTTACAAATTA+GGG | + | chr8.3:15898840-15898859 | None:intergenic | 15.0% |
| !! | GTTAGTAACAAAAAAATATT+AGG | + | chr8.3:15898942-15898961 | None:intergenic | 15.0% |
| !!! | AATATTTTTTTGTTACTAAC+TGG | - | chr8.3:15898942-15898961 | MS.gene58430:intron | 15.0% |
| !!! | ATATTTTTTTGTTACTAACT+GGG | - | chr8.3:15898943-15898962 | MS.gene58430:intron | 15.0% |
| !! | CAACTAAAAAATTGTATTGA+AGG | - | chr8.3:15898355-15898374 | MS.gene58430:intron | 20.0% |
| !! | GAAATCTCAATTTACAAATT+AGG | + | chr8.3:15898841-15898860 | None:intergenic | 20.0% |
| !! | TAAAAAATTGTATTGAAGGA+GGG | - | chr8.3:15898359-15898378 | MS.gene58430:intron | 20.0% |
| ! | AAATTGGGTTACAAAACTTT+CGG | - | chr8.3:15897501-15897520 | MS.gene58430:CDS | 25.0% |
| ! | ACATCAAAATGTCAAATCAA+GGG | + | chr8.3:15897643-15897662 | None:intergenic | 25.0% |
| ! | ACCAACATCAATACAAAATA+AGG | + | chr8.3:15897758-15897777 | None:intergenic | 25.0% |
| ! | ACCTTGTTAACATTAAGATT+AGG | + | chr8.3:15897579-15897598 | None:intergenic | 25.0% |
| ! | ATAATGTTACTGATCTTTCA+AGG | - | chr8.3:15897949-15897968 | MS.gene58430:intron | 25.0% |
| ! | CCAACATCAATACAAAATAA+GGG | + | chr8.3:15897757-15897776 | None:intergenic | 25.0% |
| ! | CTAAAAAATTGTATTGAAGG+AGG | - | chr8.3:15898358-15898377 | MS.gene58430:intron | 25.0% |
| ! | GAAACGCTAAAAACAAAATA+AGG | + | chr8.3:15898591-15898610 | None:intergenic | 25.0% |
| ! | TCCTAATCTTAATGTTAACA+AGG | - | chr8.3:15897575-15897594 | MS.gene58430:CDS | 25.0% |
| ! | TTACTAGAATTGCTTATGAA+AGG | - | chr8.3:15899008-15899027 | MS.gene58430:CDS | 25.0% |
| !! | GTTTTGTACAATGAAGAAAA+AGG | + | chr8.3:15898320-15898339 | None:intergenic | 25.0% |
| !! | TTTGTATTGATGTTGGTTAT+GGG | - | chr8.3:15897761-15897780 | MS.gene58430:intron | 25.0% |
| !! | TTTTTGTGATTGCTTTGATT+GGG | - | chr8.3:15898481-15898500 | MS.gene58430:intron | 25.0% |
| !!! | TTTAGTAGTGTTGATGTAAA+GGG | - | chr8.3:15897894-15897913 | MS.gene58430:intron | 25.0% |
| !!! | TTTTGTATTGATGTTGGTTA+TGG | - | chr8.3:15897760-15897779 | MS.gene58430:intron | 25.0% |
| !!! | TTTTTTAGTTGCTTCAAATG+AGG | + | chr8.3:15898346-15898365 | None:intergenic | 25.0% |
| !!! | TTTTTTGTGATTGCTTTGAT+TGG | - | chr8.3:15898480-15898499 | MS.gene58430:intron | 25.0% |
| AGAGAATTTGAATATTCCAC+AGG | - | chr8.3:15898715-15898734 | MS.gene58430:intron | 30.0% | |
| ATTACAAAGCCTAAAATGAG+AGG | - | chr8.3:15898507-15898526 | MS.gene58430:intron | 30.0% | |
| CAAGTGTTTCTTTCTCATTA+GGG | - | chr8.3:15899106-15899125 | MS.gene58430:CDS | 30.0% | |
| CACATCAAAATGTCAAATCA+AGG | + | chr8.3:15897644-15897663 | None:intergenic | 30.0% | |
| CACTTATATATCTACATGTC+AGG | - | chr8.3:15898784-15898803 | MS.gene58430:intron | 30.0% | |
| GAATATGATCCACACATTTA+CGG | + | chr8.3:15899160-15899179 | None:intergenic | 30.0% | |
| GAGAATTTGAATATTCCACA+GGG | - | chr8.3:15898716-15898735 | MS.gene58430:intron | 30.0% | |
| TGCATATTTGTGAATTGGAT+GGG | - | chr8.3:15897919-15897938 | MS.gene58430:intron | 30.0% | |
| TTGCATATTTGTGAATTGGA+TGG | - | chr8.3:15897918-15897937 | MS.gene58430:intron | 30.0% | |
| ! | TTTCCACCAATCTTTTTATC+AGG | + | chr8.3:15899044-15899063 | None:intergenic | 30.0% |
| !! | CTTTAGTAGTGTTGATGTAA+AGG | - | chr8.3:15897893-15897912 | MS.gene58430:intron | 30.0% |
| !! | TGACTTTTGGTTGTTTTATG+TGG | - | chr8.3:15898967-15898986 | MS.gene58430:intron | 30.0% |
| !! | TTAGTAGTGTTGATGTAAAG+GGG | - | chr8.3:15897895-15897914 | MS.gene58430:intron | 30.0% |
| !!! | CCCTTATTTTGTATTGATGT+TGG | - | chr8.3:15897754-15897773 | MS.gene58430:intron | 30.0% |
| AAACTCACAAACAAAGCCTT+GGG | + | chr8.3:15898217-15898236 | None:intergenic | 35.0% | |
| ACTCGCAATCAAAGTCTAAA+AGG | + | chr8.3:15898041-15898060 | None:intergenic | 35.0% | |
| ATCTACATGTCAGGATTGAA+CGG | - | chr8.3:15898793-15898812 | MS.gene58430:intron | 35.0% | |
| ATGGAAGAAATAGAGGAGAT+TGG | - | chr8.3:15898273-15898292 | MS.gene58430:intron | 35.0% | |
| ATTAATCCAACATCTGACCT+TGG | - | chr8.3:15898669-15898688 | MS.gene58430:intron | 35.0% | |
| GCAAGTGTTTCTTTCTCATT+AGG | - | chr8.3:15899105-15899124 | MS.gene58430:CDS | 35.0% | |
| TGGAAGAAATAGAGGAGATT+GGG | - | chr8.3:15898274-15898293 | MS.gene58430:intron | 35.0% | |
| TTAGACTTTGATTGCGAGTT+TGG | - | chr8.3:15898042-15898061 | MS.gene58430:intron | 35.0% | |
| TTAGCGTTTCCATGAATTGA+GGG | - | chr8.3:15898601-15898620 | MS.gene58430:intron | 35.0% | |
| TTTAGCGTTTCCATGAATTG+AGG | - | chr8.3:15898600-15898619 | MS.gene58430:intron | 35.0% | |
| ! | AACAGTTTTCTTCATGCTTG+GGG | - | chr8.3:15897552-15897571 | MS.gene58430:CDS | 35.0% |
| ! | CAACAGTTTTCTTCATGCTT+GGG | - | chr8.3:15897551-15897570 | MS.gene58430:CDS | 35.0% |
| ! | GTTTTGTAACCCAATTTCAC+AGG | + | chr8.3:15897498-15897517 | None:intergenic | 35.0% |
| ! | TAAAATGAGAGGAAGCACAT+GGG | - | chr8.3:15898518-15898537 | MS.gene58430:intron | 35.0% |
| ! | TCAACAGTTTTCTTCATGCT+TGG | - | chr8.3:15897550-15897569 | MS.gene58430:CDS | 35.0% |
| ! | TTACTAACTGGGATGACTTT+TGG | - | chr8.3:15898954-15898973 | MS.gene58430:intron | 35.0% |
| ! | TTTCCATGAATTGAGGGTTT+TGG | - | chr8.3:15898607-15898626 | MS.gene58430:intron | 35.0% |
| !! | AAACACTTGCTTTTCCATGT+AGG | + | chr8.3:15899095-15899114 | None:intergenic | 35.0% |
| !!! | TTTTAGCTTCCGTAAATGTG+TGG | - | chr8.3:15899148-15899167 | MS.gene58430:CDS | 35.0% |
| AAGAAATAGAGGAGATTGGG+AGG | - | chr8.3:15898277-15898296 | MS.gene58430:intron | 40.0% | |
| ACATGATGCAAACAGAGCAT+TGG | - | chr8.3:15899208-15899227 | MS.gene58430:CDS | 40.0% | |
| ACTTTGATTGCGAGTTTGGA+GGG | - | chr8.3:15898046-15898065 | MS.gene58430:intron | 40.0% | |
| AGAAATAGAGGAGATTGGGA+GGG | - | chr8.3:15898278-15898297 | MS.gene58430:intron | 40.0% | |
| AGGTGTTTCCAAGAAGCAAA+AGG | - | chr8.3:15897431-15897450 | MS.gene58430:CDS | 40.0% | |
| AGTCCAAAACCCTCAATTCA+TGG | + | chr8.3:15898613-15898632 | None:intergenic | 40.0% | |
| CAAAACTTTCGGCTCTTCTT+TGG | - | chr8.3:15897512-15897531 | MS.gene58430:CDS | 40.0% | |
| CAAACTCACAAACAAAGCCT+TGG | + | chr8.3:15898218-15898237 | None:intergenic | 40.0% | |
| CCAGAGCCTGATAAAAAGAT+TGG | - | chr8.3:15899035-15899054 | MS.gene58430:CDS | 40.0% | |
| GAAGAAGAGATGAAACCATC+AGG | - | chr8.3:15897471-15897490 | MS.gene58430:CDS | 40.0% | |
| GAGATTCAGAGTTCAACTCT+TGG | - | chr8.3:15897860-15897879 | MS.gene58430:intron | 40.0% | |
| GAGCCTGATAAAAAGATTGG+TGG | - | chr8.3:15899038-15899057 | MS.gene58430:CDS | 40.0% | |
| GGGGTTGCATATTTGTGAAT+TGG | - | chr8.3:15897914-15897933 | MS.gene58430:intron | 40.0% | |
| GTGTTTCTTTCTCATTAGGG+AGG | - | chr8.3:15899109-15899128 | MS.gene58430:CDS | 40.0% | |
| TATTGAAAACGCTGAACTCG+CGG | - | chr8.3:15897338-15897357 | MS.gene58430:CDS | 40.0% | |
| TCTACATGTCAGGATTGAAC+GGG | - | chr8.3:15898794-15898813 | MS.gene58430:intron | 40.0% | |
| TGTTTCACTTGCATTGCTTC+TGG | + | chr8.3:15899191-15899210 | None:intergenic | 40.0% | |
| TGTTTCCAAGAAGCAAAAGG+TGG | - | chr8.3:15897434-15897453 | MS.gene58430:CDS | 40.0% | |
| TTTCCGAACAAAACAGAGCA+CGG | + | chr8.3:15897799-15897818 | None:intergenic | 40.0% | |
| TTTGAAAAGGAAGGGGCAAA+TGG | - | chr8.3:15898254-15898273 | MS.gene58430:intron | 40.0% | |
| TTTGTGAGTTTGGAGGGTAA+GGG | - | chr8.3:15898226-15898245 | MS.gene58430:intron | 40.0% | |
| ! | CATGATGCAAACAGAGCATT+GGG | - | chr8.3:15899209-15899228 | MS.gene58430:CDS | 40.0% |
| ! | CATGTGCTTCCTCTCATTTT+AGG | + | chr8.3:15898519-15898538 | None:intergenic | 40.0% |
| ! | CCAATCTTTTTATCAGGCTC+TGG | + | chr8.3:15899038-15899057 | None:intergenic | 40.0% |
| ! | CTAAAATGAGAGGAAGCACA+TGG | - | chr8.3:15898517-15898536 | MS.gene58430:intron | 40.0% |
| !! | AGAATCCCTCACTTTTATCG+GGG | + | chr8.3:15898135-15898154 | None:intergenic | 40.0% |
| !! | CAAGGCTTTGTTTGTGAGTT+TGG | - | chr8.3:15898216-15898235 | MS.gene58430:intron | 40.0% |
| !! | GAGAATCCCTCACTTTTATC+GGG | + | chr8.3:15898136-15898155 | None:intergenic | 40.0% |
| !! | GCTTTGTTTGTGAGTTTGGA+GGG | - | chr8.3:15898220-15898239 | MS.gene58430:intron | 40.0% |
| !! | GGAGAATCCCTCACTTTTAT+CGG | + | chr8.3:15898137-15898156 | None:intergenic | 40.0% |
| !! | GTATTGAAGGAGGGTTTTGA+CGG | - | chr8.3:15898368-15898387 | MS.gene58430:intron | 40.0% |
| !! | TATTGAAGGAGGGTTTTGAC+GGG | - | chr8.3:15898369-15898388 | MS.gene58430:intron | 40.0% |
| !! | TCTGGTAAAAGAAAGCATCG+AGG | - | chr8.3:15899236-15899255 | MS.gene58430:CDS | 40.0% |
| !!! | TTCAAGGCTGTGTTTTGAAG+AGG | - | chr8.3:15897965-15897984 | MS.gene58430:intron | 40.0% |
| AAACCATATCACAGTCCCTG+TGG | + | chr8.3:15898734-15898753 | None:intergenic | 45.0% | |
| AAGGGGCGAAAAGGAAACAT+AGG | + | chr8.3:15898158-15898177 | None:intergenic | 45.0% | |
| AAGTTCGCAAGCATCCTACA+TGG | - | chr8.3:15899078-15899097 | MS.gene58430:CDS | 45.0% | |
| ACCATCAGGTCCTGTGAAAT+TGG | - | chr8.3:15897485-15897504 | MS.gene58430:CDS | 45.0% | |
| ACTTGCATTGCTTCTGGCAA+GGG | + | chr8.3:15899185-15899204 | None:intergenic | 45.0% | |
| AGAAATCGTCGCTGTAGACA+TGG | - | chr8.3:15897314-15897333 | MS.gene58430:CDS | 45.0% | |
| AGACTCCCCGATAAAAGTGA+GGG | - | chr8.3:15898127-15898146 | MS.gene58430:intron | 45.0% | |
| ATGTAGGATGCTTGCGAACT+TGG | + | chr8.3:15899079-15899098 | None:intergenic | 45.0% | |
| ATGTCTACAGCGACGATTTC+TGG | + | chr8.3:15897315-15897334 | None:intergenic | 45.0% | |
| ATTCCACAGGGACTGTGATA+TGG | - | chr8.3:15898728-15898747 | MS.gene58430:intron | 45.0% | |
| CAAACAAAGCCTTGGGAGTT+AGG | + | chr8.3:15898210-15898229 | None:intergenic | 45.0% | |
| CCATCAGGTCCTGTGAAATT+GGG | - | chr8.3:15897486-15897505 | MS.gene58430:CDS | 45.0% | |
| GAAATAGAGGAGATTGGGAG+GGG | - | chr8.3:15898279-15898298 | MS.gene58430:intron | 45.0% | |
| GACTTTGATTGCGAGTTTGG+AGG | - | chr8.3:15898045-15898064 | MS.gene58430:intron | 45.0% | |
| GGGCATTAAGGGTAAAGGAT+AGG | - | chr8.3:15898081-15898100 | MS.gene58430:intron | 45.0% | |
| GGGGCAAATGGAAGAAATAG+AGG | - | chr8.3:15898266-15898285 | MS.gene58430:intron | 45.0% | |
| GTTTGTGAGTTTGGAGGGTA+AGG | - | chr8.3:15898225-15898244 | MS.gene58430:intron | 45.0% | |
| TTGTGAGTTTGGAGGGTAAG+GGG | - | chr8.3:15898227-15898246 | MS.gene58430:intron | 45.0% | |
| ! | TGCTTCCACCTTTTGCTTCT+TGG | + | chr8.3:15897442-15897461 | None:intergenic | 45.0% |
| !! | AAAAGAAAGCATCGAGGTGC+TGG | - | chr8.3:15899242-15899261 | MS.gene58430:CDS | 45.0% |
| !! | AAAGCGAGATGAGGGCATTA+AGG | - | chr8.3:15898069-15898088 | MS.gene58430:intron | 45.0% |
| !! | AAGCGAGATGAGGGCATTAA+GGG | - | chr8.3:15898070-15898089 | MS.gene58430:intron | 45.0% |
| !! | ACCTTTTTCGTCGTCATCTC+TGG | + | chr8.3:15897415-15897434 | None:intergenic | 45.0% |
| !! | ACTCCGTGCTCTGTTTTGTT+CGG | - | chr8.3:15897793-15897812 | MS.gene58430:intron | 45.0% |
| !! | GATGAGGGCATTAAGGGTAA+AGG | - | chr8.3:15898076-15898095 | MS.gene58430:intron | 45.0% |
| !! | GGCTTTGTTTGTGAGTTTGG+AGG | - | chr8.3:15898219-15898238 | MS.gene58430:intron | 45.0% |
| !! | TTTTGAAGAGGAAGGGGGTT+AGG | - | chr8.3:15897977-15897996 | MS.gene58430:intron | 45.0% |
| !!! | AGGCTGTGTTTTGAAGAGGA+AGG | - | chr8.3:15897969-15897988 | MS.gene58430:intron | 45.0% |
| !!! | CTGTGTTTTGAAGAGGAAGG+GGG | - | chr8.3:15897972-15897991 | MS.gene58430:intron | 45.0% |
| !!! | GCTGTGTTTTGAAGAGGAAG+GGG | - | chr8.3:15897971-15897990 | MS.gene58430:intron | 45.0% |
| !!! | GGCTGTGTTTTGAAGAGGAA+GGG | - | chr8.3:15897970-15897989 | MS.gene58430:intron | 45.0% |
| ACAAAGCCTTGGGAGTTAGG+AGG | + | chr8.3:15898207-15898226 | None:intergenic | 50.0% | |
| ATCTCTGGCACGCTTCTGAT+TGG | + | chr8.3:15897400-15897419 | None:intergenic | 50.0% | |
| CAAAGCCTTGGGAGTTAGGA+GGG | + | chr8.3:15898206-15898225 | None:intergenic | 50.0% | |
| CACTTGCATTGCTTCTGGCA+AGG | + | chr8.3:15899186-15899205 | None:intergenic | 50.0% | |
| CCCAATTTCACAGGACCTGA+TGG | + | chr8.3:15897489-15897508 | None:intergenic | 50.0% | |
| CTTGGGAGTTAGGAGGGAAA+GGG | + | chr8.3:15898200-15898219 | None:intergenic | 50.0% | |
| GAAGCAAAAGGTGGAAGCAG+AGG | - | chr8.3:15897443-15897462 | MS.gene58430:CDS | 50.0% | |
| GAGACTCCCCGATAAAAGTG+AGG | - | chr8.3:15898126-15898145 | MS.gene58430:intron | 50.0% | |
| GCCAGAGATGACGACGAAAA+AGG | - | chr8.3:15897411-15897430 | MS.gene58430:CDS | 50.0% | |
| TAGGAGGGAAAGGGATGAGA+GGG | + | chr8.3:15898191-15898210 | None:intergenic | 50.0% | |
| TCCAACATCTGACCTTGGAC+TGG | - | chr8.3:15898674-15898693 | MS.gene58430:intron | 50.0% | |
| TCCAGTCCAAGGTCAGATGT+TGG | + | chr8.3:15898678-15898697 | None:intergenic | 50.0% | |
| TGTGAGTTTGGAGGGTAAGG+GGG | - | chr8.3:15898228-15898247 | MS.gene58430:intron | 50.0% | |
| TTAGGAGGGAAAGGGATGAG+AGG | + | chr8.3:15898192-15898211 | None:intergenic | 50.0% | |
| TTGGAGGGAAAGCGAGATGA+GGG | - | chr8.3:15898061-15898080 | MS.gene58430:intron | 50.0% | |
| TTTGGAGGAAAGGGGCGAAA+AGG | + | chr8.3:15898167-15898186 | None:intergenic | 50.0% | |
| TTTGGAGGGAAAGCGAGATG+AGG | - | chr8.3:15898060-15898079 | MS.gene58430:intron | 50.0% | |
| ! | AGGGGGGACTTTGAAAAGGA+AGG | - | chr8.3:15898245-15898264 | MS.gene58430:intron | 50.0% |
| ! | GGGGGACTTTGAAAAGGAAG+GGG | - | chr8.3:15898247-15898266 | MS.gene58430:intron | 50.0% |
| ! | GGGGGGACTTTGAAAAGGAA+GGG | - | chr8.3:15898246-15898265 | MS.gene58430:intron | 50.0% |
| ! | GGTAAGGGGGGACTTTGAAA+AGG | - | chr8.3:15898241-15898260 | MS.gene58430:intron | 50.0% |
| ! | TTGGACTGGATTGAGCTGCA+GGG | - | chr8.3:15898688-15898707 | MS.gene58430:intron | 50.0% |
| !! | AACAGAGCATTGGGTGGTTC+TGG | - | chr8.3:15899218-15899237 | MS.gene58430:CDS | 50.0% |
| !! | ACAGCGACGATTTCTGGTTC+CGG | + | chr8.3:15897309-15897328 | None:intergenic | 50.0% |
| !! | ATGAGAGGGCTTTGGAGGAA+AGG | + | chr8.3:15898177-15898196 | None:intergenic | 50.0% |
| !! | GATGCAAACAGAGCATTGGG+TGG | - | chr8.3:15899212-15899231 | MS.gene58430:CDS | 50.0% |
| !! | TGAGAGGGCTTTGGAGGAAA+GGG | + | chr8.3:15898176-15898195 | None:intergenic | 50.0% |
| !!! | AGGAGGGTTTTGACGGGTTT+TGG | - | chr8.3:15898375-15898394 | MS.gene58430:intron | 50.0% |
| !!! | AGGGTTTTGACGGGTTTTGG+AGG | - | chr8.3:15898378-15898397 | MS.gene58430:intron | 50.0% |
| !!! | GGGTTTTGACGGGTTTTGGA+GGG | - | chr8.3:15898379-15898398 | MS.gene58430:intron | 50.0% |
| ACACATGGACGTGGGGGAAA+GGG | - | chr8.3:15899278-15899297 | MS.gene58430:CDS | 55.0% | |
| CCTTGGGAGTTAGGAGGGAA+AGG | + | chr8.3:15898201-15898220 | None:intergenic | 55.0% | |
| CCTTTCCCTCCTAACTCCCA+AGG | - | chr8.3:15898198-15898217 | MS.gene58430:intron | 55.0% | |
| CTGCAGCTCAATCCAGTCCA+AGG | + | chr8.3:15898689-15898708 | None:intergenic | 55.0% | |
| GCAAAAGGTGGAAGCAGAGG+TGG | - | chr8.3:15897446-15897465 | MS.gene58430:CDS | 55.0% | |
| GGAAAGGGATGAGAGGGCTT+TGG | + | chr8.3:15898185-15898204 | None:intergenic | 55.0% | |
| GTGAGTTTGGAGGGTAAGGG+GGG | - | chr8.3:15898229-15898248 | MS.gene58430:intron | 55.0% | |
| TACACATGGACGTGGGGGAA+AGG | - | chr8.3:15899277-15899296 | MS.gene58430:CDS | 55.0% | |
| TGAAAACGCTGAACTCGCGG+AGG | - | chr8.3:15897341-15897360 | MS.gene58430:CDS | 55.0% | |
| TGAACTCGCGGAGGTTAACG+CGG | - | chr8.3:15897350-15897369 | MS.gene58430:CDS | 55.0% | |
| TGAAGAGGAAGGGGGTTAGG+AGG | - | chr8.3:15897980-15897999 | MS.gene58430:intron | 55.0% | |
| ! | AAGGGATGAGAGGGCTTTGG+AGG | + | chr8.3:15898182-15898201 | None:intergenic | 55.0% |
| ! | AGAGGAGGTACACATGGACG+TGG | - | chr8.3:15899269-15899288 | MS.gene58430:CDS | 55.0% |
| ! | AGGAGGTACACATGGACGTG+GGG | - | chr8.3:15899271-15899290 | MS.gene58430:CDS | 55.0% |
| ! | CTTGGACTGGATTGAGCTGC+AGG | - | chr8.3:15898687-15898706 | MS.gene58430:intron | 55.0% |
| ! | GAGGAGGTACACATGGACGT+GGG | - | chr8.3:15899270-15899289 | MS.gene58430:CDS | 55.0% |
| ! | GGTGGAAGAGGAGGTACACA+TGG | - | chr8.3:15899263-15899282 | MS.gene58430:CDS | 55.0% |
| !! | AGAAAGCATCGAGGTGCTGG+TGG | - | chr8.3:15899245-15899264 | MS.gene58430:CDS | 55.0% |
| !! | GAGAGGGCTTTGGAGGAAAG+GGG | + | chr8.3:15898175-15898194 | None:intergenic | 55.0% |
| !! | GATTTCTGGTTCCGGTGCAG+CGG | + | chr8.3:15897301-15897320 | None:intergenic | 55.0% |
| AAGGGGGTTAGGAGGACAGG+CGG | - | chr8.3:15897988-15898007 | MS.gene58430:intron | 60.0% | |
| AGGAAGGGGGTTAGGAGGAC+AGG | - | chr8.3:15897985-15898004 | MS.gene58430:intron | 60.0% | |
| ! | GGAGGTACACATGGACGTGG+GGG | - | chr8.3:15899272-15899291 | MS.gene58430:CDS | 60.0% |
| !! | CATCGAGGTGCTGGTGGAAG+AGG | - | chr8.3:15899251-15899270 | MS.gene58430:CDS | 60.0% |
| !! | CGAGGTGCTGGTGGAAGAGG+AGG | - | chr8.3:15899254-15899273 | MS.gene58430:CDS | 65.0% |
| GAGGACAGGCGGCGAGCAGA+GGG | - | chr8.3:15897999-15898018 | MS.gene58430:intron | 70.0% | |
| GGAGGACAGGCGGCGAGCAG+AGG | - | chr8.3:15897998-15898017 | MS.gene58430:intron | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.3 | gene | 15897288 | 15899316 | 15897288 | ID=MS.gene58430 |
| chr8.3 | mRNA | 15897288 | 15899316 | 15897288 | ID=MS.gene58430.t1;Parent=MS.gene58430 |
| chr8.3 | exon | 15899008 | 15899316 | 15899008 | ID=MS.gene58430.t1.exon1;Parent=MS.gene58430.t1 |
| chr8.3 | CDS | 15899008 | 15899316 | 15899008 | ID=cds.MS.gene58430.t1;Parent=MS.gene58430.t1 |
| chr8.3 | exon | 15897288 | 15897611 | 15897288 | ID=MS.gene58430.t1.exon2;Parent=MS.gene58430.t1 |
| chr8.3 | CDS | 15897288 | 15897611 | 15897288 | ID=cds.MS.gene58430.t1;Parent=MS.gene58430.t1 |
| Gene Sequence |
| Protein sequence |
