Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene58582.t1 | XP_003613423.1 | 94.1 | 237 | 14 | 0 | 2 | 238 | 1 | 237 | 1.70E-87 | 332.4 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene58582.t1 | Q9ZWS9 | 71.4 | 147 | 37 | 2 | 12 | 158 | 28 | 169 | 1.5e-52 | 207.6 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene58582.t1 | G7K5L8 | 94.1 | 237 | 14 | 0 | 2 | 238 | 1 | 237 | 1.2e-87 | 332.4 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene58582.t1 | TR | Others |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene25697 | MS.gene58582 | PPI |
MS.gene58582 | MS.gene044333 | PPI |
MS.gene58582 | MS.gene70470 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene58582.t1 | MTR_5g036480 | 94.937 | 237 | 12 | 0 | 2 | 238 | 1 | 237 | 4.14e-140 | 392 |
MS.gene58582.t1 | MTR_1g049100 | 67.249 | 229 | 43 | 3 | 10 | 238 | 1 | 197 | 2.12e-86 | 254 |
MS.gene58582.t1 | MTR_4g106590 | 71.233 | 146 | 37 | 2 | 16 | 160 | 25 | 166 | 1.04e-63 | 197 |
MS.gene58582.t1 | MTR_3g078613 | 67.883 | 137 | 40 | 1 | 16 | 152 | 22 | 154 | 3.21e-60 | 188 |
MS.gene58582.t1 | MTR_7g490310 | 60.265 | 151 | 55 | 2 | 16 | 161 | 8 | 158 | 4.44e-60 | 189 |
MS.gene58582.t1 | MTR_3g078613 | 67.391 | 138 | 40 | 2 | 16 | 152 | 22 | 155 | 1.93e-58 | 184 |
MS.gene58582.t1 | MTR_8g038620 | 59.722 | 144 | 52 | 2 | 16 | 154 | 8 | 150 | 1.43e-53 | 171 |
MS.gene58582.t1 | MTR_3g093860 | 58.955 | 134 | 47 | 3 | 18 | 148 | 19 | 147 | 4.34e-50 | 161 |
MS.gene58582.t1 | MTR_3g015490 | 53.472 | 144 | 59 | 2 | 16 | 154 | 3 | 143 | 1.95e-46 | 152 |
MS.gene58582.t1 | MTR_3g088630 | 49.342 | 152 | 62 | 3 | 11 | 148 | 16 | 166 | 1.33e-45 | 152 |
MS.gene58582.t1 | MTR_6g007460 | 40.415 | 193 | 56 | 4 | 16 | 154 | 10 | 197 | 1.39e-36 | 128 |
MS.gene58582.t1 | MTR_4g061360 | 28.992 | 238 | 134 | 5 | 17 | 238 | 89 | 307 | 8.78e-19 | 85.5 |
MS.gene58582.t1 | MTR_3g092780 | 30.412 | 194 | 107 | 6 | 17 | 196 | 56 | 235 | 9.52e-18 | 82.0 |
MS.gene58582.t1 | MTR_3g092780 | 30.412 | 194 | 107 | 6 | 17 | 196 | 56 | 235 | 9.81e-18 | 82.0 |
MS.gene58582.t1 | MTR_3g092780 | 29.744 | 195 | 108 | 6 | 17 | 196 | 56 | 236 | 1.70e-17 | 81.6 |
MS.gene58582.t1 | MTR_3g092780 | 29.744 | 195 | 108 | 6 | 17 | 196 | 56 | 236 | 1.77e-17 | 81.6 |
MS.gene58582.t1 | MTR_4g051330 | 57.143 | 56 | 24 | 0 | 99 | 154 | 77 | 132 | 2.01e-15 | 71.6 |
MS.gene58582.t1 | MTR_1g067110 | 30.827 | 133 | 79 | 2 | 19 | 151 | 87 | 206 | 1.39e-14 | 73.2 |
MS.gene58582.t1 | MTR_8g024260 | 30.216 | 139 | 84 | 1 | 15 | 153 | 34 | 159 | 1.51e-14 | 72.8 |
MS.gene58582.t1 | MTR_1g067110 | 30.827 | 133 | 79 | 2 | 19 | 151 | 87 | 206 | 1.88e-14 | 72.8 |
MS.gene58582.t1 | MTR_7g118260 | 29.630 | 135 | 82 | 2 | 19 | 153 | 16 | 137 | 4.66e-13 | 68.6 |
MS.gene58582.t1 | MTR_7g118260 | 29.630 | 135 | 82 | 2 | 19 | 153 | 16 | 137 | 5.00e-13 | 68.2 |
MS.gene58582.t1 | MTR_4g131580 | 26.087 | 161 | 103 | 3 | 17 | 177 | 21 | 165 | 1.49e-12 | 67.0 |
MS.gene58582.t1 | MTR_4g131600 | 26.471 | 170 | 105 | 5 | 19 | 188 | 26 | 175 | 6.54e-12 | 65.1 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene58582.t1 | AT1G59940 | 55.066 | 227 | 66 | 5 | 12 | 230 | 28 | 226 | 3.74e-72 | 220 |
MS.gene58582.t1 | AT1G10470 | 53.937 | 254 | 57 | 7 | 12 | 234 | 15 | 239 | 6.27e-71 | 217 |
MS.gene58582.t1 | AT1G59940 | 55.066 | 227 | 66 | 5 | 12 | 230 | 120 | 318 | 6.97e-71 | 220 |
MS.gene58582.t1 | AT1G10470 | 52.239 | 268 | 65 | 8 | 1 | 234 | 15 | 253 | 1.11e-70 | 217 |
MS.gene58582.t1 | AT3G48100 | 71.223 | 139 | 37 | 2 | 17 | 155 | 25 | 160 | 1.71e-64 | 199 |
MS.gene58582.t1 | AT5G62920 | 75.385 | 130 | 26 | 2 | 17 | 145 | 25 | 149 | 3.13e-63 | 196 |
MS.gene58582.t1 | AT1G19050 | 55.000 | 180 | 57 | 3 | 10 | 189 | 17 | 172 | 9.27e-60 | 187 |
MS.gene58582.t1 | AT1G74890 | 70.769 | 130 | 34 | 1 | 16 | 145 | 17 | 142 | 6.35e-59 | 185 |
MS.gene58582.t1 | AT3G57040 | 56.707 | 164 | 58 | 3 | 16 | 168 | 8 | 169 | 1.41e-57 | 183 |
MS.gene58582.t1 | AT3G57040 | 56.707 | 164 | 58 | 3 | 16 | 168 | 8 | 169 | 1.41e-57 | 183 |
MS.gene58582.t1 | AT2G41310 | 59.864 | 147 | 55 | 2 | 16 | 158 | 8 | 154 | 1.80e-56 | 180 |
MS.gene58582.t1 | AT3G56380 | 59.701 | 134 | 51 | 1 | 15 | 148 | 18 | 148 | 4.76e-56 | 176 |
MS.gene58582.t1 | AT2G40670 | 60.000 | 135 | 51 | 2 | 15 | 148 | 27 | 159 | 8.34e-55 | 173 |
MS.gene58582.t1 | AT3G56380 | 59.259 | 135 | 51 | 2 | 15 | 148 | 18 | 149 | 2.67e-54 | 172 |
MS.gene58582.t1 | AT2G40670 | 59.559 | 136 | 51 | 3 | 15 | 148 | 27 | 160 | 4.14e-53 | 169 |
MS.gene58582.t1 | AT1G10470 | 40.107 | 187 | 54 | 8 | 80 | 234 | 17 | 177 | 2.95e-22 | 90.5 |
MS.gene58582.t1 | AT2G07440 | 55.000 | 60 | 27 | 0 | 99 | 158 | 9 | 68 | 3.60e-15 | 70.5 |
MS.gene58582.t1 | AT2G46790 | 29.630 | 135 | 82 | 2 | 17 | 151 | 37 | 158 | 8.19e-15 | 73.6 |
MS.gene58582.t1 | AT2G46790 | 29.630 | 135 | 82 | 2 | 17 | 151 | 37 | 158 | 1.05e-14 | 73.2 |
MS.gene58582.t1 | AT5G60100 | 34.586 | 133 | 74 | 2 | 19 | 151 | 66 | 185 | 1.12e-14 | 72.8 |
MS.gene58582.t1 | AT5G60100 | 34.586 | 133 | 74 | 2 | 19 | 151 | 66 | 185 | 1.12e-14 | 72.8 |
MS.gene58582.t1 | AT5G60100 | 34.586 | 133 | 74 | 2 | 19 | 151 | 66 | 185 | 1.12e-14 | 72.8 |
MS.gene58582.t1 | AT5G24470 | 30.657 | 137 | 80 | 3 | 17 | 153 | 52 | 173 | 1.61e-14 | 72.8 |
MS.gene58582.t1 | AT5G60100 | 34.586 | 133 | 74 | 2 | 19 | 151 | 66 | 185 | 2.08e-14 | 72.4 |
MS.gene58582.t1 | AT5G60100 | 34.586 | 133 | 74 | 2 | 19 | 151 | 66 | 185 | 2.35e-14 | 72.0 |
MS.gene58582.t1 | AT5G60100 | 34.586 | 133 | 74 | 2 | 19 | 151 | 66 | 185 | 2.35e-14 | 72.0 |
MS.gene58582.t1 | AT5G60100 | 34.586 | 133 | 74 | 2 | 19 | 151 | 66 | 185 | 2.35e-14 | 72.0 |
MS.gene58582.t1 | AT5G02810 | 29.630 | 135 | 82 | 1 | 17 | 151 | 78 | 199 | 1.08e-13 | 70.5 |
MS.gene58582.t1 | AT5G07210 | 32.576 | 132 | 72 | 3 | 16 | 147 | 15 | 129 | 1.14e-13 | 70.5 |
MS.gene58582.t1 | AT5G07210 | 30.714 | 140 | 72 | 4 | 16 | 147 | 15 | 137 | 3.38e-11 | 63.2 |
Find 52 sgRNAs with CRISPR-Local
Find 90 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
AATAAGAGCACTACAATTTC+TGG | 0.202396 | 5.3:+24920898 | MS.gene58582:CDS |
TTCTCAAGAGGTTCATGTTT+TGG | 0.250601 | 5.3:+24920633 | MS.gene58582:CDS |
GTTTCCTTAGCCTGGTTTGA+AGG | 0.364670 | 5.3:+24921053 | MS.gene58582:intron |
CTCAAAATTTCAGCTTGTAA+AGG | 0.419180 | 5.3:+24920700 | MS.gene58582:CDS |
AACTCATAACCAGTCATTCC+TGG | 0.425647 | 5.3:-24921105 | None:intergenic |
TAGCGATAACTTCACTGTCT+TGG | 0.452797 | 5.3:-24921950 | None:intergenic |
AGCACTACAATTTCTGGGGT+TGG | 0.454081 | 5.3:+24920904 | MS.gene58582:CDS |
ATAAGAGCACTACAATTTCT+GGG | 0.455946 | 5.3:+24920899 | MS.gene58582:CDS |
TGAGTTGCTTAAGAAAATCA+AGG | 0.460054 | 5.3:+24921122 | MS.gene58582:CDS |
TGAAAGTGTTGATGATGAAA+TGG | 0.468109 | 5.3:-24922075 | None:intergenic |
ATTACAGATTATTGCATGCC+AGG | 0.468259 | 5.3:+24921087 | MS.gene58582:CDS |
TATTGCATGCCAGGAATGAC+TGG | 0.472610 | 5.3:+24921096 | MS.gene58582:CDS |
TCAGAAGACATGATCACTAC+TGG | 0.477520 | 5.3:-24921271 | None:intergenic |
TTAGTTACTGCAGTGGATAG+TGG | 0.477996 | 5.3:+24920875 | MS.gene58582:intron |
ACATCTTGCCACGCATTGAC+AGG | 0.484895 | 5.3:+24921296 | MS.gene58582:CDS |
GGATAGAGATCAACAACAAA+AGG | 0.490693 | 5.3:+24922012 | MS.gene58582:CDS |
TCCTTAGCCTGGTTTGAAGG+TGG | 0.500088 | 5.3:+24921056 | MS.gene58582:intron |
GCTTCCCGCTCTAACCTCCC+TGG | 0.501953 | 5.3:-24921928 | None:intergenic |
ATCTGACGTGAAACGTTTGA+AGG | 0.502511 | 5.3:+24921893 | MS.gene58582:CDS |
TACTGGAATTGCTCTAAAAG+TGG | 0.506655 | 5.3:-24921254 | None:intergenic |
GACAACCAGGGAGGTTAGAG+CGG | 0.506833 | 5.3:+24921923 | MS.gene58582:CDS |
ATTGGAGAATCAAGAATGTC+GGG | 0.519018 | 5.3:-24922143 | None:intergenic |
TTCACGTCAGATAATTTCAC+TGG | 0.529676 | 5.3:-24921882 | None:intergenic |
TTCTTGATTCTCCAATCAGA+CGG | 0.540193 | 5.3:+24922150 | MS.gene58582:CDS |
TTGATCGTAAAGTCATTGAA+AGG | 0.541223 | 5.3:+24920674 | MS.gene58582:CDS |
ATAACGATGGTGATGGTGTA+GGG | 0.541250 | 5.3:+24921991 | MS.gene58582:CDS |
GATAACGATGGTGATGGTGT+AGG | 0.548802 | 5.3:+24921990 | MS.gene58582:CDS |
ATCAGACGGCTTAAAATGAC+CGG | 0.557664 | 5.3:+24922164 | MS.gene58582:CDS |
GATTGGAGAATCAAGAATGT+CGG | 0.564103 | 5.3:-24922144 | None:intergenic |
TCGAAAGAGTCATTCGGTGC+CGG | 0.565124 | 5.3:-24922183 | None:intergenic |
TGACAATCGAAAGAGTCATT+CGG | 0.569827 | 5.3:-24922189 | None:intergenic |
TATTGATGTTGATTCTCAAG+AGG | 0.575024 | 5.3:+24920621 | MS.gene58582:CDS |
TCTGACGTGAAACGTTTGAA+GGG | 0.584866 | 5.3:+24921894 | MS.gene58582:CDS |
TGGACGGTGGTGATGATGAC+AGG | 0.585676 | 5.3:-24922055 | None:intergenic |
ACTAGATCCACCTTCAAACC+AGG | 0.592739 | 5.3:-24921063 | None:intergenic |
ACAACCAGGGAGGTTAGAGC+GGG | 0.595105 | 5.3:+24921924 | MS.gene58582:CDS |
TGAAGGGTTACATGACAACC+AGG | 0.599838 | 5.3:+24921910 | MS.gene58582:CDS |
GAAGATGACGGTGATGATGA+TGG | 0.607419 | 5.3:-24922101 | None:intergenic |
GTTATCGCTACCAACGGTGT+TGG | 0.609134 | 5.3:+24921963 | MS.gene58582:CDS |
AAATGTAGATGCTTGGAGGA+AGG | 0.613553 | 5.3:+24921837 | MS.gene58582:intron |
GTTATCGTTACCAACACCGT+TGG | 0.634811 | 5.3:-24921973 | None:intergenic |
ATGCTTGGAGGAAGGTGCAG+AGG | 0.640084 | 5.3:+24921845 | MS.gene58582:CDS |
TAAGAGCACTACAATTTCTG+GGG | 0.651134 | 5.3:+24920900 | MS.gene58582:CDS |
AGTGAAGTTATCGCTACCAA+CGG | 0.690720 | 5.3:+24921957 | MS.gene58582:CDS |
GGTAACGATAACGATGGTGA+TGG | 0.701040 | 5.3:+24921984 | MS.gene58582:CDS |
AGTGTTGATGATGAAATGGA+CGG | 0.715438 | 5.3:-24922071 | None:intergenic |
AACGGTGATGATGAAGATGA+CGG | 0.730299 | 5.3:-24922113 | None:intergenic |
GTTGATGATGAAATGGACGG+TGG | 0.734267 | 5.3:-24922068 | None:intergenic |
GAAGGGTTACATGACAACCA+GGG | 0.738936 | 5.3:+24921911 | MS.gene58582:CDS |
AGAATGTCGGGTGAAGACAA+CGG | 0.739291 | 5.3:-24922131 | None:intergenic |
GGTGTTGGTAACGATAACGA+TGG | 0.744946 | 5.3:+24921978 | MS.gene58582:CDS |
GGGTTACATGACAACCAGGG+AGG | 0.751767 | 5.3:+24921914 | MS.gene58582:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | CAATAATTTAATTTTTTTTG+GGG | + | chr5.3:24921481-24921500 | MS.gene58582:intron | 10.0% |
!!! | CTCAATAATTTAATTTTTTT+TGG | + | chr5.3:24921479-24921498 | MS.gene58582:intron | 10.0% |
!! | AATTAAATTATTGAGATTGT+AGG | - | chr5.3:24921474-24921493 | None:intergenic | 15.0% |
!! | TACCTCTAATAATATATATT+TGG | - | chr5.3:24921433-24921452 | None:intergenic | 15.0% |
!! | TCATATACTTTGTATTAAAT+TGG | - | chr5.3:24921695-24921714 | None:intergenic | 15.0% |
!!! | TTTCTTTTTCTCATTTTTAA+AGG | + | chr5.3:24920769-24920788 | MS.gene58582:intron | 15.0% |
!! | AAAAAATTATAGCAATGATC+AGG | - | chr5.3:24921544-24921563 | None:intergenic | 20.0% |
!! | AAAAATTATAGCAATGATCA+GGG | - | chr5.3:24921543-24921562 | None:intergenic | 20.0% |
!! | ACAAAACAAAAAGAAGAAAA+TGG | + | chr5.3:24920744-24920763 | MS.gene58582:intron | 20.0% |
!! | AGCCAAATATATATTATTAG+AGG | + | chr5.3:24921428-24921447 | MS.gene58582:intron | 20.0% |
!! | CAATAAAGTGTAAAAATGAA+GGG | - | chr5.3:24921172-24921191 | None:intergenic | 20.0% |
!! | GAAATTATGATGTAGAAAAA+AGG | + | chr5.3:24921793-24921812 | MS.gene58582:intron | 20.0% |
!! | TCAATAAAGTGTAAAAATGA+AGG | - | chr5.3:24921173-24921192 | None:intergenic | 20.0% |
!!! | TATGTTAAAATTGTTGTTAG+TGG | + | chr5.3:24921718-24921737 | MS.gene58582:intron | 20.0% |
!!! | TTTTAGGTGCAATATATATA+TGG | - | chr5.3:24921395-24921414 | None:intergenic | 20.0% |
! | AAAATTATAGCAATGATCAG+GGG | - | chr5.3:24921542-24921561 | None:intergenic | 25.0% |
! | ATTGAAAAAATGTAGATGCT+TGG | + | chr5.3:24921830-24921849 | MS.gene58582:intron | 25.0% |
!! | TAAAAGTTTCAATTTGAAGC+AGG | + | chr5.3:24921225-24921244 | MS.gene58582:intron | 25.0% |
!!! | AAGCTAACAATATTTTTACG+AGG | + | chr5.3:24921366-24921385 | MS.gene58582:intron | 25.0% |
!!! | GACAGGTATTTTTTCTTTTT+TGG | + | chr5.3:24921313-24921332 | MS.gene58582:intron | 25.0% |
!!! | TTTATTTTTAGTTACTGCAG+TGG | + | chr5.3:24920868-24920887 | MS.gene58582:intron | 25.0% |
CTCAAAATTTCAGCTTGTAA+AGG | + | chr5.3:24920700-24920719 | MS.gene58582:CDS | 30.0% | |
TGAGTTGCTTAAGAAAATCA+AGG | + | chr5.3:24921122-24921141 | MS.gene58582:CDS | 30.0% | |
TTGATCGTAAAGTCATTGAA+AGG | + | chr5.3:24920674-24920693 | MS.gene58582:CDS | 30.0% | |
!! | AATAAGAGCACTACAATTTC+TGG | + | chr5.3:24920898-24920917 | MS.gene58582:CDS | 30.0% |
!! | ATAAGAGCACTACAATTTCT+GGG | + | chr5.3:24920899-24920918 | MS.gene58582:CDS | 30.0% |
!! | CTAACAATATTTTTACGAGG+TGG | + | chr5.3:24921369-24921388 | MS.gene58582:intron | 30.0% |
!! | TATTGATGTTGATTCTCAAG+AGG | + | chr5.3:24920621-24920640 | MS.gene58582:CDS | 30.0% |
!! | TGAAAGTGTTGATGATGAAA+TGG | - | chr5.3:24922078-24922097 | None:intergenic | 30.0% |
!!! | TTTATTTTGTTTCCTTAGCC+TGG | + | chr5.3:24921045-24921064 | MS.gene58582:intron | 30.0% |
AAAAAATACCTGTCAATGCG+TGG | - | chr5.3:24921307-24921326 | None:intergenic | 35.0% | |
AGAATTATCATCATTGCCAG+CGG | + | chr5.3:24921341-24921360 | MS.gene58582:intron | 35.0% | |
ATTACAGATTATTGCATGCC+AGG | + | chr5.3:24921087-24921106 | MS.gene58582:CDS | 35.0% | |
ATTGCACCTAAAATCGAACT+TGG | + | chr5.3:24921402-24921421 | MS.gene58582:intron | 35.0% | |
ATTGGAGAATCAAGAATGTC+GGG | - | chr5.3:24922146-24922165 | None:intergenic | 35.0% | |
GAAAAAATGTAGATGCTTGG+AGG | + | chr5.3:24921833-24921852 | MS.gene58582:intron | 35.0% | |
GATTGGAGAATCAAGAATGT+CGG | - | chr5.3:24922147-24922166 | None:intergenic | 35.0% | |
GGATAGAGATCAACAACAAA+AGG | + | chr5.3:24922012-24922031 | MS.gene58582:CDS | 35.0% | |
TTCACGTCAGATAATTTCAC+TGG | - | chr5.3:24921885-24921904 | None:intergenic | 35.0% | |
TTCTTGATTCTCCAATCAGA+CGG | + | chr5.3:24922150-24922169 | MS.gene58582:CDS | 35.0% | |
TTGCACCTAAAATCGAACTT+GGG | + | chr5.3:24921403-24921422 | MS.gene58582:intron | 35.0% | |
! | TTCTCAAGAGGTTCATGTTT+TGG | + | chr5.3:24920633-24920652 | MS.gene58582:CDS | 35.0% |
!! | AGTGTTGATGATGAAATGGA+CGG | - | chr5.3:24922074-24922093 | None:intergenic | 35.0% |
!! | TAAGAGCACTACAATTTCTG+GGG | + | chr5.3:24920900-24920919 | MS.gene58582:CDS | 35.0% |
!! | TACTGGAATTGCTCTAAAAG+TGG | - | chr5.3:24921257-24921276 | None:intergenic | 35.0% |
AAATGTAGATGCTTGGAGGA+AGG | + | chr5.3:24921837-24921856 | MS.gene58582:intron | 40.0% | |
AACTCATAACCAGTCATTCC+TGG | - | chr5.3:24921108-24921127 | None:intergenic | 40.0% | |
AGTGAAGTTATCGCTACCAA+CGG | + | chr5.3:24921957-24921976 | MS.gene58582:CDS | 40.0% | |
ATCAGACGGCTTAAAATGAC+CGG | + | chr5.3:24922164-24922183 | MS.gene58582:CDS | 40.0% | |
ATCTGACGTGAAACGTTTGA+AGG | + | chr5.3:24921893-24921912 | MS.gene58582:CDS | 40.0% | |
CGAATGCTTGTACAATCAAG+GGG | - | chr5.3:24921519-24921538 | None:intergenic | 40.0% | |
GCGAATGCTTGTACAATCAA+GGG | - | chr5.3:24921520-24921539 | None:intergenic | 40.0% | |
TAGCGATAACTTCACTGTCT+TGG | - | chr5.3:24921953-24921972 | None:intergenic | 40.0% | |
TCAGAAGACATGATCACTAC+TGG | - | chr5.3:24921274-24921293 | None:intergenic | 40.0% | |
TCTGACGTGAAACGTTTGAA+GGG | + | chr5.3:24921894-24921913 | MS.gene58582:CDS | 40.0% | |
TGCACCTAAAATCGAACTTG+GGG | + | chr5.3:24921404-24921423 | MS.gene58582:intron | 40.0% | |
TTAGTTACTGCAGTGGATAG+TGG | + | chr5.3:24920875-24920894 | MS.gene58582:intron | 40.0% | |
! | AACGGTGATGATGAAGATGA+CGG | - | chr5.3:24922116-24922135 | None:intergenic | 40.0% |
!! | ATAACGATGGTGATGGTGTA+GGG | + | chr5.3:24921991-24922010 | MS.gene58582:CDS | 40.0% |
!! | GTCATTTTAAGCCGTCTGAT+TGG | - | chr5.3:24922164-24922183 | None:intergenic | 40.0% |
ACTAGATCCACCTTCAAACC+AGG | - | chr5.3:24921066-24921085 | None:intergenic | 45.0% | |
AGAATGTCGGGTGAAGACAA+CGG | - | chr5.3:24922134-24922153 | None:intergenic | 45.0% | |
GAAGGGTTACATGACAACCA+GGG | + | chr5.3:24921911-24921930 | MS.gene58582:CDS | 45.0% | |
GGCGAATGCTTGTACAATCA+AGG | - | chr5.3:24921521-24921540 | None:intergenic | 45.0% | |
GGTAACGATAACGATGGTGA+TGG | + | chr5.3:24921984-24922003 | MS.gene58582:CDS | 45.0% | |
GTACAATCAAGGGGTAGCTA+TGG | - | chr5.3:24921510-24921529 | None:intergenic | 45.0% | |
GTTATCGTTACCAACACCGT+TGG | - | chr5.3:24921976-24921995 | None:intergenic | 45.0% | |
TATTGCATGCCAGGAATGAC+TGG | + | chr5.3:24921096-24921115 | MS.gene58582:CDS | 45.0% | |
TGAAGGGTTACATGACAACC+AGG | + | chr5.3:24921910-24921929 | MS.gene58582:CDS | 45.0% | |
! | AATATTGTTAGCTTCGCCGC+TGG | - | chr5.3:24921360-24921379 | None:intergenic | 45.0% |
! | GAAGATGACGGTGATGATGA+TGG | - | chr5.3:24922104-24922123 | None:intergenic | 45.0% |
! | GCTACCCCAAGTTCGATTTT+AGG | - | chr5.3:24921411-24921430 | None:intergenic | 45.0% |
! | GTTTCCTTAGCCTGGTTTGA+AGG | + | chr5.3:24921053-24921072 | MS.gene58582:intron | 45.0% |
!! | AGCACTACAATTTCTGGGGT+TGG | + | chr5.3:24920904-24920923 | MS.gene58582:CDS | 45.0% |
!! | GATAACGATGGTGATGGTGT+AGG | + | chr5.3:24921990-24922009 | MS.gene58582:CDS | 45.0% |
!! | GGTGTTGGTAACGATAACGA+TGG | + | chr5.3:24921978-24921997 | MS.gene58582:CDS | 45.0% |
!! | GTTGATGATGAAATGGACGG+TGG | - | chr5.3:24922071-24922090 | None:intergenic | 45.0% |
!! | CTAAAATAAAAAATTTAAAT+TGG | - | chr5.3:24920975-24920994 | None:intergenic | 5.0% |
!!! | ATTTAAATTTTTTATTTTAG+CGG | + | chr5.3:24920975-24920994 | MS.gene58582:intron | 5.0% |
!!! | TCAATAATTTAATTTTTTTT+GGG | + | chr5.3:24921480-24921499 | MS.gene58582:intron | 5.0% |
GTTATCGCTACCAACGGTGT+TGG | + | chr5.3:24921963-24921982 | MS.gene58582:CDS | 50.0% | |
TCCACCTTCAAACCAGGCTA+AGG | - | chr5.3:24921060-24921079 | None:intergenic | 50.0% | |
! | ACATCTTGCCACGCATTGAC+AGG | + | chr5.3:24921296-24921315 | MS.gene58582:CDS | 50.0% |
! | TCCTTAGCCTGGTTTGAAGG+TGG | + | chr5.3:24921056-24921075 | MS.gene58582:intron | 50.0% |
ACAACCAGGGAGGTTAGAGC+GGG | + | chr5.3:24921924-24921943 | MS.gene58582:CDS | 55.0% | |
GACAACCAGGGAGGTTAGAG+CGG | + | chr5.3:24921923-24921942 | MS.gene58582:CDS | 55.0% | |
GGGTTACATGACAACCAGGG+AGG | + | chr5.3:24921914-24921933 | MS.gene58582:CDS | 55.0% | |
! | ATGCTTGGAGGAAGGTGCAG+AGG | + | chr5.3:24921845-24921864 | MS.gene58582:CDS | 55.0% |
! | TGGACGGTGGTGATGATGAC+AGG | - | chr5.3:24922058-24922077 | None:intergenic | 55.0% |
GCTTCCCGCTCTAACCTCCC+TGG | - | chr5.3:24921931-24921950 | None:intergenic | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr5.3 | gene | 24920595 | 24922196 | 24920595 | ID=MS.gene58582 |
chr5.3 | mRNA | 24920595 | 24922196 | 24920595 | ID=MS.gene58582.t1;Parent=MS.gene58582 |
chr5.3 | exon | 24920595 | 24920721 | 24920595 | ID=MS.gene58582.t1.exon1;Parent=MS.gene58582.t1 |
chr5.3 | CDS | 24920595 | 24920721 | 24920595 | ID=cds.MS.gene58582.t1;Parent=MS.gene58582.t1 |
chr5.3 | exon | 24920879 | 24920964 | 24920879 | ID=MS.gene58582.t1.exon2;Parent=MS.gene58582.t1 |
chr5.3 | CDS | 24920879 | 24920964 | 24920879 | ID=cds.MS.gene58582.t1;Parent=MS.gene58582.t1 |
chr5.3 | exon | 24921063 | 24921143 | 24921063 | ID=MS.gene58582.t1.exon3;Parent=MS.gene58582.t1 |
chr5.3 | CDS | 24921063 | 24921143 | 24921063 | ID=cds.MS.gene58582.t1;Parent=MS.gene58582.t1 |
chr5.3 | exon | 24921247 | 24921317 | 24921247 | ID=MS.gene58582.t1.exon4;Parent=MS.gene58582.t1 |
chr5.3 | CDS | 24921247 | 24921317 | 24921247 | ID=cds.MS.gene58582.t1;Parent=MS.gene58582.t1 |
chr5.3 | exon | 24921845 | 24922196 | 24921845 | ID=MS.gene58582.t1.exon5;Parent=MS.gene58582.t1 |
chr5.3 | CDS | 24921845 | 24922196 | 24921845 | ID=cds.MS.gene58582.t1;Parent=MS.gene58582.t1 |
Gene Sequence |
Protein sequence |