AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene58966

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene58966.t1 MTR_8g102150 97.785 316 7 0 1 316 1 316 0.0 645
MS.gene58966.t1 MTR_8g015220 74.448 317 68 3 1 316 1 305 2.16e-175 488
MS.gene58966.t1 MTR_8g015220 72.598 281 64 3 1 280 1 269 2.95e-150 422
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene58966.t1 AT2G19800 77.603 317 70 1 1 316 1 317 0.0 521
MS.gene58966.t1 AT4G26260 78.302 318 67 1 1 316 1 318 0.0 515
MS.gene58966.t1 AT4G26260 78.438 320 62 3 1 316 1 317 0.0 511
MS.gene58966.t1 AT5G56640 77.181 298 66 2 21 316 17 314 4.95e-173 482
MS.gene58966.t1 AT5G56640 81.091 275 51 1 43 316 10 284 6.32e-170 473
MS.gene58966.t1 AT1G14520 71.118 322 76 3 1 316 1 311 9.79e-169 471
MS.gene58966.t1 AT1G14520 71.118 322 76 3 1 316 1 311 9.79e-169 471
MS.gene58966.t1 AT1G14520 71.875 320 75 4 1 316 1 309 1.90e-168 470
MS.gene58966.t1 AT1G14520 71.019 314 74 3 1 308 1 303 8.67e-162 454

Find 64 sgRNAs with CRISPR-Local

Find 130 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTCTTCTGCTTCCTAAATT+TGG 0.129202 5.2:-38817540 MS.gene58966:CDS
TGAGGTAATTCACCAAATTT+AGG 0.223539 5.2:+38817528 None:intergenic
TGGCCAAATGAATTGATTTC+AGG 0.232542 5.2:+38818284 None:intergenic
ACGAAAATCCTTACGGTAAA+AGG 0.245636 5.2:+38816839 None:intergenic
ACAAAGCAGAAATGAGTATA+TGG 0.246822 5.2:-38817918 MS.gene58966:CDS
TAAGCAGGGGATTTGATATC+AGG 0.289677 5.2:+38817212 None:intergenic
CATTTGACTGCTCTCATTCA+TGG 0.300205 5.2:-38817769 MS.gene58966:intron
TCAATAAGTGATAGATAATA+TGG 0.308416 5.2:+38816506 None:intergenic
GAAGAAAGTGAAAGGCAAAA+AGG 0.312701 5.2:-38818132 MS.gene58966:CDS
ATTCATTTGGCCATGCCTTC+AGG 0.318144 5.2:-38818274 MS.gene58966:intron
GTGCAGGTTGCTAAGGAAAA+TGG 0.342888 5.2:-38816906 MS.gene58966:intron
AGCTTACAAAATCATATGTT+TGG 0.344683 5.2:+38818076 None:intergenic
TATCACCATCTAAGCTTTGC+TGG 0.359991 5.2:+38816379 None:intergenic
ATTTCCCAGCAAAGCTTAGA+TGG 0.363074 5.2:-38816384 MS.gene58966:CDS
GCCCCTGAAATCAATTCATT+TGG 0.364619 5.2:-38818287 MS.gene58966:CDS
GTTCCTGCTGCAGTATTTCA+AGG 0.366185 5.2:-38817240 MS.gene58966:intron
ATTTGTGGTTCATCCAAATC+AGG 0.380292 5.2:+38817853 None:intergenic
GGCTCCACTTTGCCAAATGC+TGG 0.389898 5.2:-38816885 MS.gene58966:CDS
ATTGTCTTGCTTCAGATCTT+GGG 0.404763 5.2:-38817566 MS.gene58966:intron
AAGATTATCCTAATGAAGAT+TGG 0.408744 5.2:-38817795 MS.gene58966:CDS
GGATGAAAGTGATCCTGATT+TGG 0.408862 5.2:-38817866 MS.gene58966:CDS
ATTTGGTGAATTACCTCAAT+GGG 0.414194 5.2:-38817523 MS.gene58966:CDS
ATCAATGAACTTGTTCTTGA+TGG 0.416085 5.2:-38818353 MS.gene58966:CDS
ATAATGAACAATCCAGCATT+TGG 0.417188 5.2:+38816873 None:intergenic
AAATGTAACCAATCTTCATT+AGG 0.423631 5.2:+38817787 None:intergenic
GTCCACATGCTCAACAAGTA+TGG 0.432050 5.2:+38818506 None:intergenic
TTACCTTGCAGCTTTGCATA+AGG 0.435788 5.2:-38816752 MS.gene58966:intron
TGCAGCAAATGTTGAATTTG+TGG 0.449869 5.2:+38817838 None:intergenic
AAGGGGTTGAGGAATTCTAT+AGG 0.455597 5.2:-38818113 MS.gene58966:CDS
TTCATCAAAGGCACAACCTA+AGG 0.469206 5.2:+38817365 None:intergenic
GCAGGAGACACATTTCCCTT+AGG 0.472594 5.2:-38817381 MS.gene58966:intron
AATTTGGTGAATTACCTCAA+TGG 0.484943 5.2:-38817524 MS.gene58966:CDS
CTTGTTGAGCATGTGGACTT+TGG 0.499354 5.2:-38818501 MS.gene58966:intron
TGAATTGCTGAATGAGGTTG+TGG 0.499420 5.2:-38817887 MS.gene58966:CDS
TACAAGCATACTTAAATATG+TGG 0.508320 5.2:+38816674 None:intergenic
GGCCAAATGAATTGATTTCA+GGG 0.508703 5.2:+38818285 None:intergenic
TAATGTAGGTGAAGAAAATG+AGG 0.510914 5.2:-38817960 MS.gene58966:intron
ACATGATGATTATATGTGTA+TGG 0.511397 5.2:-38817126 MS.gene58966:intron
TTACCTCAATGGGCTGTTGT+TGG 0.522851 5.2:-38817513 MS.gene58966:intron
CAAAGCAGAAATGAGTATAT+GGG 0.524713 5.2:-38817917 MS.gene58966:CDS
AATGAACTTGTTCTTGATGG+TGG 0.532274 5.2:-38818350 MS.gene58966:CDS
CTTGCAGCTTTGCATAAGGA+AGG 0.535318 5.2:-38816748 MS.gene58966:intron
ATCCAATGTGCAGGTTGCTA+AGG 0.541945 5.2:-38816913 MS.gene58966:intron
CAATCCAGCATTTGGCAAAG+TGG 0.546474 5.2:+38816881 None:intergenic
ATCACCATCTAAGCTTTGCT+GGG 0.549776 5.2:+38816380 None:intergenic
TTATCTATCACTTATTGAGA+AGG 0.553529 5.2:-38816501 MS.gene58966:intron
AAGCAGGGGATTTGATATCA+GGG 0.566312 5.2:+38817213 None:intergenic
GGGATCTACAATGAAGGGTG+TGG 0.566729 5.2:-38817176 MS.gene58966:CDS
GTGAACATTTGATTCATCAA+AGG 0.571274 5.2:+38817353 None:intergenic
TAGACAATGTGATGATGTCA+TGG 0.573976 5.2:-38817151 MS.gene58966:CDS
AAAATGGGATCTACAATGAA+GGG 0.582573 5.2:-38817181 MS.gene58966:CDS
ATTATGATGAAGAAAGTGAA+AGG 0.589249 5.2:-38818140 MS.gene58966:CDS
TCATCAAAGGCACAACCTAA+GGG 0.592008 5.2:+38817366 None:intergenic
TTGGAAATAACCTGAAGGCA+TGG 0.600865 5.2:+38818264 None:intergenic
ATGTTGTGAATTGCTGAATG+AGG 0.601153 5.2:-38817893 MS.gene58966:CDS
TGATCTCTACAGCAAAAGCA+AGG 0.624334 5.2:-38816555 MS.gene58966:CDS
GCCAAATGAATTGATTTCAG+GGG 0.627992 5.2:+38818286 None:intergenic
GACCATACTTGTTGAGCATG+TGG 0.630105 5.2:-38818508 MS.gene58966:CDS
AATGTAGGTGAAGAAAATGA+GGG 0.632828 5.2:-38817959 MS.gene58966:intron
TAACCAACAACAGCCCATTG+AGG 0.638571 5.2:+38817510 None:intergenic
AGACAATGTGATGATGTCAT+GGG 0.660175 5.2:-38817150 MS.gene58966:CDS
TGAATCAAATGTTCACCACA+AGG 0.666189 5.2:-38817346 MS.gene58966:intron
GTAGGTGAAGAAAATGAGGG+AGG 0.669919 5.2:-38817956 MS.gene58966:intron
GACAATGTGATGATGTCATG+GGG 0.752398 5.2:-38817149 MS.gene58966:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATGTTAATTAATTAATGT+AGG - chr5.2:38816917-38816936 MS.gene58966:intron 10.0%
!! AAAAAACAATGAAATAGAAT+TGG + chr5.2:38816649-38816668 None:intergenic 15.0%
!! TTAGTAATTATTATGTAATG+AGG + chr5.2:38818291-38818310 None:intergenic 15.0%
!!! TGTTACTTATTATTTTGTTT+TGG - chr5.2:38818469-38818488 MS.gene58966:intron 15.0%
!!! TTAATTAACATTTTGCAAAT+TGG + chr5.2:38816910-38816929 None:intergenic 15.0%
!! AAAGATCATTTACAATTTCA+AGG - chr5.2:38817206-38817225 MS.gene58966:CDS 20.0%
!! AGATATTTATAATTACCTTG+TGG + chr5.2:38817563-38817582 None:intergenic 20.0%
!! ATCATATGAAAATAAGTGTA+AGG + chr5.2:38817416-38817435 None:intergenic 20.0%
!! TCAATAAGTGATAGATAATA+TGG + chr5.2:38818388-38818407 None:intergenic 20.0%
!!! CACATTTTTATCATCAAATT+GGG + chr5.2:38816506-38816525 None:intergenic 20.0%
!!! TATTCAACATTTTAACTGAA+TGG - chr5.2:38817473-38817492 MS.gene58966:intron 20.0%
! AAATGTAACCAATCTTCATT+AGG + chr5.2:38817107-38817126 None:intergenic 25.0%
! AAGATTATCCTAATGAAGAT+TGG - chr5.2:38817096-38817115 MS.gene58966:intron 25.0%
! ACAAGATGATTGGAATTATT+TGG - chr5.2:38816723-38816742 MS.gene58966:CDS 25.0%
! ACATGATGATTATATGTGTA+TGG - chr5.2:38817765-38817784 MS.gene58966:intron 25.0%
! AGAAATTAACACAAGATGAT+TGG - chr5.2:38816713-38816732 MS.gene58966:CDS 25.0%
! AGCTTACAAAATCATATGTT+TGG + chr5.2:38816818-38816837 None:intergenic 25.0%
! ATCGTGTGATGAATTATTTA+CGG + chr5.2:38817796-38817815 None:intergenic 25.0%
! ATTATGATGAAGAAAGTGAA+AGG - chr5.2:38816751-38816770 MS.gene58966:intron 25.0%
! CATAATAACGAAAATCCTTA+CGG + chr5.2:38818062-38818081 None:intergenic 25.0%
! CTGCTTATAACACTAAAAAT+GGG - chr5.2:38817695-38817714 MS.gene58966:intron 25.0%
! GAATCATCAGAAAATTGATT+CGG + chr5.2:38817924-38817943 None:intergenic 25.0%
! TACAAGCATACTTAAATATG+TGG + chr5.2:38818220-38818239 None:intergenic 25.0%
! TGAAATAGACACAAATTTGA+TGG + chr5.2:38816857-38816876 None:intergenic 25.0%
! TGATGATAAAAATGTGCATT+CGG - chr5.2:38816510-38816529 MS.gene58966:CDS 25.0%
! TTATCTATCACTTATTGAGA+AGG - chr5.2:38818390-38818409 MS.gene58966:CDS 25.0%
!! AAATTTTCTGTACAGAGAAT+GGG + chr5.2:38818096-38818115 None:intergenic 25.0%
!! CATTTTGCAAATTGGAATTT+TGG + chr5.2:38816902-38816921 None:intergenic 25.0%
!! GCACATTTTTATCATCAAAT+TGG + chr5.2:38816507-38816526 None:intergenic 25.0%
!! TAAATTTTCTGTACAGAGAA+TGG + chr5.2:38818097-38818116 None:intergenic 25.0%
!! TTTTACTGAATCGTTTGAAT+TGG - chr5.2:38817835-38817854 MS.gene58966:CDS 25.0%
!!! AAGATTTTGAGAATTTGAAG+TGG - chr5.2:38818192-38818211 MS.gene58966:intron 25.0%
!!! ATTTTTAGTGTTATAAGCAG+GGG + chr5.2:38817695-38817714 None:intergenic 25.0%
!!! CATTTTTAGTGTTATAAGCA+GGG + chr5.2:38817696-38817715 None:intergenic 25.0%
!!! TGTAAATGATCTTTTTTGTC+AGG + chr5.2:38817200-38817219 None:intergenic 25.0%
AAAAATGGGATCTACAATGA+AGG - chr5.2:38817709-38817728 MS.gene58966:intron 30.0%
AAAATGGGATCTACAATGAA+GGG - chr5.2:38817710-38817729 MS.gene58966:intron 30.0%
AAGAAAGTGAAAGGCAAAAA+GGG - chr5.2:38816760-38816779 MS.gene58966:intron 30.0%
AATGTAGGTGAAGAAAATGA+GGG - chr5.2:38816932-38816951 MS.gene58966:intron 30.0%
ACAAAGCAGAAATGAGTATA+TGG - chr5.2:38816973-38816992 MS.gene58966:intron 30.0%
ACCTTTCTAAATGGATATCA+TGG - chr5.2:38817270-38817289 MS.gene58966:intron 30.0%
AGTAACACAGAAAAACAATG+AGG + chr5.2:38818456-38818475 None:intergenic 30.0%
ATAACAAGCCACATTATTAC+AGG - chr5.2:38816478-38816497 MS.gene58966:intron 30.0%
ATAATGAACAATCCAGCATT+TGG + chr5.2:38818021-38818040 None:intergenic 30.0%
ATGGTTAATGACATATTTGC+AGG - chr5.2:38817492-38817511 MS.gene58966:intron 30.0%
ATTCTTCTGCTTCCTAAATT+TGG - chr5.2:38817351-38817370 MS.gene58966:CDS 30.0%
CAAAGCAGAAATGAGTATAT+GGG - chr5.2:38816974-38816993 MS.gene58966:intron 30.0%
CCTGCTTATAACACTAAAAA+TGG - chr5.2:38817694-38817713 MS.gene58966:intron 30.0%
CCTTTCTAAATGGATATCAT+GGG - chr5.2:38817271-38817290 MS.gene58966:intron 30.0%
CTTTCTAAATGGATATCATG+GGG - chr5.2:38817272-38817291 MS.gene58966:intron 30.0%
GTAACACAGAAAAACAATGA+GGG + chr5.2:38818455-38818474 None:intergenic 30.0%
GTGAACATTTGATTCATCAA+AGG + chr5.2:38817541-38817560 None:intergenic 30.0%
TAACAAGCCACATTATTACA+GGG - chr5.2:38816479-38816498 MS.gene58966:intron 30.0%
TAACACCAATCTTGATGAAT+TGG - chr5.2:38818413-38818432 MS.gene58966:intron 30.0%
TAATGTAGGTGAAGAAAATG+AGG - chr5.2:38816931-38816950 MS.gene58966:intron 30.0%
TAGAATTGGAAATAACCTGA+AGG + chr5.2:38816635-38816654 None:intergenic 30.0%
TGAGGTAATTCACCAAATTT+AGG + chr5.2:38817366-38817385 None:intergenic 30.0%
TTTGTGTCTATTTCACATGA+AGG - chr5.2:38816862-38816881 MS.gene58966:CDS 30.0%
! AATTTGGTGAATTACCTCAA+TGG - chr5.2:38817367-38817386 MS.gene58966:CDS 30.0%
! AATTTTCTGTACAGAGAATG+GGG + chr5.2:38818095-38818114 None:intergenic 30.0%
! ATCAATGAACTTGTTCTTGA+TGG - chr5.2:38816538-38816557 MS.gene58966:CDS 30.0%
! ATGTCAGACTTGTTCAAATT+AGG + chr5.2:38817250-38817269 None:intergenic 30.0%
! ATTTGGTGAATTACCTCAAT+GGG - chr5.2:38817368-38817387 MS.gene58966:CDS 30.0%
! GACTTGTTCAAATTAGGATA+TGG + chr5.2:38817244-38817263 None:intergenic 30.0%
!! AAAATTGATTCGGATTTCCT+CGG + chr5.2:38817914-38817933 None:intergenic 30.0%
!! AATGTGGCTTGTTATATGAT+GGG + chr5.2:38816473-38816492 None:intergenic 30.0%
!! TAATGTGGCTTGTTATATGA+TGG + chr5.2:38816474-38816493 None:intergenic 30.0%
!!! CCATTTTTAGTGTTATAAGC+AGG + chr5.2:38817697-38817716 None:intergenic 30.0%
!!! GCATTTTGAGAAGCATTTTT+TGG + chr5.2:38816577-38816596 None:intergenic 30.0%
ACGAAAATCCTTACGGTAAA+AGG + chr5.2:38818055-38818074 None:intergenic 35.0%
AGAAAGTGAAAGGCAAAAAG+GGG - chr5.2:38816761-38816780 MS.gene58966:intron 35.0%
ATGTTGTGAATTGCTGAATG+AGG - chr5.2:38816998-38817017 MS.gene58966:intron 35.0%
ATTGTCTTGCTTCAGATCTT+GGG - chr5.2:38817325-38817344 MS.gene58966:intron 35.0%
ATTTGTGGTTCATCCAAATC+AGG + chr5.2:38817041-38817060 None:intergenic 35.0%
CATGACCAATTCATCAAGAT+TGG + chr5.2:38818421-38818440 None:intergenic 35.0%
CCCATGATATCCATTTAGAA+AGG + chr5.2:38817274-38817293 None:intergenic 35.0%
GAAGAAAGTGAAAGGCAAAA+AGG - chr5.2:38816759-38816778 MS.gene58966:intron 35.0%
GATGATTGGAATTATTTGGC+AGG - chr5.2:38816727-38816746 MS.gene58966:CDS 35.0%
GTCTGACATACCTTTCTAAA+TGG - chr5.2:38817261-38817280 MS.gene58966:intron 35.0%
TATTGTCTTGCTTCAGATCT+TGG - chr5.2:38817324-38817343 MS.gene58966:intron 35.0%
TGAATCAAATGTTCACCACA+AGG - chr5.2:38817545-38817564 MS.gene58966:CDS 35.0%
TGCAGCAAATGTTGAATTTG+TGG + chr5.2:38817056-38817075 None:intergenic 35.0%
! AATGAACTTGTTCTTGATGG+TGG - chr5.2:38816541-38816560 MS.gene58966:CDS 35.0%
! AGACAATGTGATGATGTCAT+GGG - chr5.2:38817741-38817760 MS.gene58966:intron 35.0%
! ATATCACTCCTTTTACCGTA+AGG - chr5.2:38818044-38818063 MS.gene58966:intron 35.0%
! GCCAAATGAATTGATTTCAG+GGG + chr5.2:38816608-38816627 None:intergenic 35.0%
! GGCCAAATGAATTGATTTCA+GGG + chr5.2:38816609-38816628 None:intergenic 35.0%
! TAGACAATGTGATGATGTCA+TGG - chr5.2:38817740-38817759 MS.gene58966:intron 35.0%
! TGGCCAAATGAATTGATTTC+AGG + chr5.2:38816610-38816629 None:intergenic 35.0%
!!! TGAGAAGCATTTTTTGGTAG+AGG + chr5.2:38816571-38816590 None:intergenic 35.0%
AAGCAGGGGATTTGATATCA+GGG + chr5.2:38817681-38817700 None:intergenic 40.0%
AAGGGGTTGAGGAATTCTAT+AGG - chr5.2:38816778-38816797 MS.gene58966:intron 40.0%
ATTGGGACCCTGTAATAATG+TGG + chr5.2:38816489-38816508 None:intergenic 40.0%
ATTTCCCAGCAAAGCTTAGA+TGG - chr5.2:38818507-38818526 MS.gene58966:CDS 40.0%
CATTTGACTGCTCTCATTCA+TGG - chr5.2:38817122-38817141 MS.gene58966:intron 40.0%
GCCCCTGAAATCAATTCATT+TGG - chr5.2:38816604-38816623 MS.gene58966:intron 40.0%
GGATGAAAGTGATCCTGATT+TGG - chr5.2:38817025-38817044 MS.gene58966:intron 40.0%
TAAGCAGGGGATTTGATATC+AGG + chr5.2:38817682-38817701 None:intergenic 40.0%
TGAATTGCTGAATGAGGTTG+TGG - chr5.2:38817004-38817023 MS.gene58966:intron 40.0%
TGATCTCTACAGCAAAAGCA+AGG - chr5.2:38818336-38818355 MS.gene58966:CDS 40.0%
TTACCTTGCAGCTTTGCATA+AGG - chr5.2:38818139-38818158 MS.gene58966:CDS 40.0%
TTATGCAAAGCTGCAAGGTA+AGG + chr5.2:38818140-38818159 None:intergenic 40.0%
TTGGAAATAACCTGAAGGCA+TGG + chr5.2:38816630-38816649 None:intergenic 40.0%
! GACAATGTGATGATGTCATG+GGG - chr5.2:38817742-38817761 MS.gene58966:intron 40.0%
! TCATCAAAGGCACAACCTAA+GGG + chr5.2:38817528-38817547 None:intergenic 40.0%
! TTCATCAAAGGCACAACCTA+AGG + chr5.2:38817529-38817548 None:intergenic 40.0%
ATCCAATGTGCAGGTTGCTA+AGG - chr5.2:38817978-38817997 MS.gene58966:intron 45.0%
ATTCATTTGGCCATGCCTTC+AGG - chr5.2:38816617-38816636 MS.gene58966:intron 45.0%
CAATCCAGCATTTGGCAAAG+TGG + chr5.2:38818013-38818032 None:intergenic 45.0%
CTGCAGCAGGAACAAGATTT+AGG + chr5.2:38817644-38817663 None:intergenic 45.0%
CTTCCTTATGCAAAGCTGCA+AGG + chr5.2:38818145-38818164 None:intergenic 45.0%
CTTGCAGCTTTGCATAAGGA+AGG - chr5.2:38818143-38818162 MS.gene58966:CDS 45.0%
CTTGTTGAGCATGTGGACTT+TGG - chr5.2:38816390-38816409 MS.gene58966:intron 45.0%
GTAGGTGAAGAAAATGAGGG+AGG - chr5.2:38816935-38816954 MS.gene58966:intron 45.0%
GTCCACATGCTCAACAAGTA+TGG + chr5.2:38816388-38816407 None:intergenic 45.0%
GTGCAGGTTGCTAAGGAAAA+TGG - chr5.2:38817985-38818004 MS.gene58966:intron 45.0%
GTTCCTGCTGCAGTATTTCA+AGG - chr5.2:38817651-38817670 MS.gene58966:intron 45.0%
TAACCAACAACAGCCCATTG+AGG + chr5.2:38817384-38817403 None:intergenic 45.0%
TCTCCTTGAAATACTGCAGC+AGG + chr5.2:38817657-38817676 None:intergenic 45.0%
TGAAAGGCAAAAAGGGGTTG+AGG - chr5.2:38816767-38816786 MS.gene58966:intron 45.0%
TTCCTTAGCAACCTGCACAT+TGG + chr5.2:38817983-38818002 None:intergenic 45.0%
! GACCATACTTGTTGAGCATG+TGG - chr5.2:38816383-38816402 MS.gene58966:CDS 45.0%
!! TTACCTCAATGGGCTGTTGT+TGG - chr5.2:38817378-38817397 MS.gene58966:CDS 45.0%
!! AAATAATATAAATATTGAAA+AGG + chr5.2:38817158-38817177 None:intergenic 5.0%
!! TTTCAAAAAAAATAAAATTA+TGG + chr5.2:38816686-38816705 None:intergenic 5.0%
ACACTGTGCATCCAATGTGC+AGG - chr5.2:38817969-38817988 MS.gene58966:intron 50.0%
GCAGGAGACACATTTCCCTT+AGG - chr5.2:38817510-38817529 MS.gene58966:intron 50.0%
GGGATCTACAATGAAGGGTG+TGG - chr5.2:38817715-38817734 MS.gene58966:intron 50.0%
GGCTCCACTTTGCCAAATGC+TGG - chr5.2:38818006-38818025 MS.gene58966:intron 55.0%
! GTGTGATGTGCTAGCTTCCG+AGG - chr5.2:38817894-38817913 MS.gene58966:CDS 55.0%


Chromosome Type Strat End Strand Name
chr5.2 gene 38816381 38818532 38816381 ID=MS.gene58966
chr5.2 mRNA 38816381 38818532 38816381 ID=MS.gene58966.t1;Parent=MS.gene58966
chr5.2 exon 38818502 38818532 38818502 ID=MS.gene58966.t1.exon1;Parent=MS.gene58966.t1
chr5.2 CDS 38818502 38818532 38818502 ID=cds.MS.gene58966.t1;Parent=MS.gene58966.t1
chr5.2 exon 38818275 38818413 38818275 ID=MS.gene58966.t1.exon2;Parent=MS.gene58966.t1
chr5.2 CDS 38818275 38818413 38818275 ID=cds.MS.gene58966.t1;Parent=MS.gene58966.t1
chr5.2 exon 38818083 38818164 38818083 ID=MS.gene58966.t1.exon3;Parent=MS.gene58966.t1
chr5.2 CDS 38818083 38818164 38818083 ID=cds.MS.gene58966.t1;Parent=MS.gene58966.t1
chr5.2 exon 38817770 38817974 38817770 ID=MS.gene58966.t1.exon4;Parent=MS.gene58966.t1
chr5.2 CDS 38817770 38817974 38817770 ID=cds.MS.gene58966.t1;Parent=MS.gene58966.t1
chr5.2 exon 38817514 38817573 38817514 ID=MS.gene58966.t1.exon5;Parent=MS.gene58966.t1
chr5.2 CDS 38817514 38817573 38817514 ID=cds.MS.gene58966.t1;Parent=MS.gene58966.t1
chr5.2 exon 38817347 38817399 38817347 ID=MS.gene58966.t1.exon6;Parent=MS.gene58966.t1
chr5.2 CDS 38817347 38817399 38817347 ID=cds.MS.gene58966.t1;Parent=MS.gene58966.t1
chr5.2 exon 38817127 38817249 38817127 ID=MS.gene58966.t1.exon7;Parent=MS.gene58966.t1
chr5.2 CDS 38817127 38817249 38817127 ID=cds.MS.gene58966.t1;Parent=MS.gene58966.t1
chr5.2 exon 38816853 38816922 38816853 ID=MS.gene58966.t1.exon8;Parent=MS.gene58966.t1
chr5.2 CDS 38816853 38816922 38816853 ID=cds.MS.gene58966.t1;Parent=MS.gene58966.t1
chr5.2 exon 38816685 38816763 38816685 ID=MS.gene58966.t1.exon9;Parent=MS.gene58966.t1
chr5.2 CDS 38816685 38816763 38816685 ID=cds.MS.gene58966.t1;Parent=MS.gene58966.t1
chr5.2 exon 38816502 38816583 38816502 ID=MS.gene58966.t1.exon10;Parent=MS.gene58966.t1
chr5.2 CDS 38816502 38816583 38816502 ID=cds.MS.gene58966.t1;Parent=MS.gene58966.t1
chr5.2 exon 38816381 38816407 38816381 ID=MS.gene58966.t1.exon11;Parent=MS.gene58966.t1
chr5.2 CDS 38816381 38816407 38816381 ID=cds.MS.gene58966.t1;Parent=MS.gene58966.t1
Gene Sequence

>MS.gene58966

ATGACCATACTTGTTGAGCATGTGGACTTTGGTAATGATTCTTTTTTGTTTTTGTTTATTTTATTGCTTCTATAGCATAACATAAAAGTCCCATCATATAACAAGCCACATTATTACAGGGTCCCAATTTGATGATAAAAATGTGCATTCGGAAGACATCAATGAACTTGTTCTTGATGGTGGATTTCCTCTACCAAAAAATGCTTCTCAAAATGCATTCTTCGCCCCTGAAATCAATTCATTTGGCCATGCCTTCAGGTTATTTCCAATTCTATTTCATTGTTTTTTTTCTTCGTCTATAACCATAATTTTATTTTTTTTGAAAATAAAAAAGAAATTAACACAAGATGATTGGAATTATTTGGCAGGAATTATGATGAAGAAAGTGAAAGGCAAAAAGGGGTTGAGGAATTCTATAGGTTGCAACACATCAACCAAACATATGATTTTGTAAGCTAATTTTATAATTATTTCCATCAAATTTGTGTCTATTTCACATGAAGGAAATGTAATTGTGACCAAAATTCCAATTTGCAAAATGTTAATTAATTAATGTAGGTGAAGAAAATGAGGGAGGAATACAAGAAATTAGACAAAGCAGAAATGAGTATATGGGAATGTTGTGAATTGCTGAATGAGGTTGTGGATGAAAGTGATCCTGATTTGGATGAACCACAAATTCAACATTTGCTGCAATCTGCTGAAGCTATTAGAAAAGATTATCCTAATGAAGATTGGTTACATTTGACTGCTCTCATTCATGGTACATAATCACCTTTTCAATATTTATATTATTTTTTAATTCAACATTCATATCCTGACAAAAAAGATCATTTACAATTTCAAGGCATGATAATCATCCATATCCTAATTTGAACAAGTCTGACATACCTTTCTAAATGGATATCATGGGGTCTCAATAATCTAACATTATTATTGTTATTATTGTCTTGCTTCAGATCTTGGGAAAATTCTTCTGCTTCCTAAATTTGGTGAATTACCTCAATGGGCTGTTGTTGGTTAGAAACTATTCCTTACACTTATTTTCATATGATTTTTGTTATGAACATTAGTTATTTGTATTGAACATTGTATTCAACATTTTAACTGAATGGTTAATGACATATTTGCAGGAGACACATTTCCCTTAGGTTGTGCCTTTGATGAATCAAATGTTCACCACAAGGTAATTATAAATATCTTGTAAAATTATGACAATGAATGAGTCAATTGTTTAATCTTAAGTAATCAATCAATTTACCTAAATCTTGTTCCTGCTGCAGTATTTCAAGGAGAACCCTGATATCAAATCCCCTGCTTATAACACTAAAAATGGGATCTACAATGAAGGGTGTGGACTAGACAATGTGATGATGTCATGGGGACATGATGATTATATGTGTATGGTGAGTCCGTAAATAATTCATCACACGATAGTATTAAATTTTCATTTTTTTTACTGAATCGTTTGAATTGGTTCGATCTTGATCTAATAGTCTAAATTGTGACAAATGTGTGATGTGCTAGCTTCCGAGGAAATCCGAATCAATTTTCTGATGATTCAACGATACTTTATTTACGATCTAATACACTGTGCATCCAATGTGCAGGTTGCTAAGGAAAATGGCTCCACTTTGCCAAATGCTGGATTGTTCATTATCAGATATCACTCCTTTTACCGTAAGGATTTTCGTTATTATGTGAAAACTTACCCCATTCTCTGTACAGAAAATTTATTTACTGAAAAACTTGATGACCTTACCTTGCAGCTTTGCATAAGGAAGGTGCATACACTCACTTGATGAATGAAGAAGATTTTGAGAATTTGAAGTGGCTCCACATATTTAAGTATGCTTGTATTTTAGTTTCATCATTTTTTTATTCATTTGCACACATCTTTTGCTTCTCCTCATTACATAATAATTACTAATGATGTAATTTTTGTACAGCAAATATGATCTCTACAGCAAAAGCAAGGTTCTAGTTGATGTCGAAGCAGTGAAGCCATATTATCTATCACTTATTGAGAAGGTAACACCAATCTTGATGAATTGGTCATGTATTTTTTGTTCCCTCATTGTTTTTCTGTGTTACTTATTATTTTGTTTTGGTCATTGTTTTGCAGTATTTCCCAGCAAAGCTTAGATGGTGA
Protein sequence

>MS.gene58966.t1

MTILVEHVDFGSQFDDKNVHSEDINELVLDGGFPLPKNASQNAFFAPEINSFGHAFRNYDEESERQKGVEEFYRLQHINQTYDFVKKMREEYKKLDKAEMSIWECCELLNEVVDESDPDLDEPQIQHLLQSAEAIRKDYPNEDWLHLTALIHDLGKILLLPKFGELPQWAVVGDTFPLGCAFDESNVHHKYFKENPDIKSPAYNTKNGIYNEGCGLDNVMMSWGHDDYMCMVAKENGSTLPNAGLFIIRYHSFYPLHKEGAYTHLMNEEDFENLKWLHIFNKYDLYSKSKVLVDVEAVKPYYLSLIEKYFPAKLRW