Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59297.t1 | RHN52065.1 | 99.8 | 423 | 1 | 0 | 1 | 423 | 24 | 446 | 1.60E-237 | 831.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59297.t1 | Q42971 | 91.3 | 423 | 37 | 0 | 1 | 423 | 24 | 446 | 4.3e-223 | 775.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59297.t1 | A0A396HLB1 | 99.8 | 423 | 1 | 0 | 1 | 423 | 24 | 446 | 1.2e-237 | 831.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050225 | MS.gene59297 | 0.853459 | 2.36E-61 | -1.69E-46 |
| MS.gene050790 | MS.gene59297 | 0.804828 | 1.79E-49 | -1.69E-46 |
| MS.gene056618 | MS.gene59297 | 0.824974 | 6.03E-54 | -1.69E-46 |
| MS.gene058386 | MS.gene59297 | 0.811102 | 8.28E-51 | -1.69E-46 |
| MS.gene060823 | MS.gene59297 | 0.805449 | 1.33E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59297.t1 | MTR_6g060570 | 95.508 | 423 | 2 | 1 | 1 | 423 | 24 | 429 | 0.0 | 818 |
| MS.gene59297.t1 | MTR_7g103620 | 88.652 | 423 | 47 | 1 | 1 | 423 | 23 | 444 | 0.0 | 783 |
| MS.gene59297.t1 | MTR_7g103620 | 88.421 | 380 | 43 | 1 | 44 | 423 | 16 | 394 | 0.0 | 701 |
| MS.gene59297.t1 | MTR_2g056190 | 67.857 | 420 | 124 | 6 | 1 | 419 | 82 | 491 | 0.0 | 569 |
| MS.gene59297.t1 | MTR_5g096970 | 58.852 | 418 | 160 | 7 | 1 | 417 | 66 | 472 | 5.34e-169 | 482 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59297.t1 | AT2G36530 | 86.052 | 423 | 58 | 1 | 1 | 423 | 23 | 444 | 0.0 | 756 |
| MS.gene59297.t1 | AT2G36530 | 86.052 | 423 | 58 | 1 | 1 | 423 | 12 | 433 | 0.0 | 755 |
| MS.gene59297.t1 | AT1G74030 | 68.095 | 420 | 123 | 6 | 1 | 419 | 68 | 477 | 0.0 | 573 |
| MS.gene59297.t1 | AT2G29560 | 57.656 | 418 | 165 | 7 | 1 | 417 | 66 | 472 | 2.87e-164 | 470 |
Find 0 sgRNAs with CRISPR-Local
Find 261 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AACAAAAATATATAGTAAAA+AGG | + | 42850:32022-32041 | MS.gene59297:intergenic | 10.0% |
| !! | AACATTATTATGTTTATTAT+TGG | - | 42850:33959-33978 | MS.gene59297:intron | 10.0% |
| !! | ACAAAAATATATAGTAAAAA+GGG | + | 42850:32021-32040 | MS.gene59297:intergenic | 10.0% |
| !!! | ATTTTACATTATTCTTTTAT+TGG | + | 42850:34805-34824 | MS.gene59297:intergenic | 10.0% |
| !! | AAATAAAACAACTTAATAGA+TGG | + | 42850:33023-33042 | MS.gene59297:intergenic | 15.0% |
| !! | TGCTAGTAAATAAAAAATTA+CGG | + | 42850:34060-34079 | MS.gene59297:intergenic | 15.0% |
| !! | TTACAAAATACAAATTTCAA+AGG | + | 42850:34689-34708 | MS.gene59297:intergenic | 15.0% |
| !!! | AATTATTTTGTATGCAAATT+TGG | + | 42850:33258-33277 | MS.gene59297:intergenic | 15.0% |
| !!! | AATTTTCTTTATAACCTATT+TGG | - | 42850:34144-34163 | MS.gene59297:intron | 15.0% |
| !!! | ATTTATTTTGTTTGCATATT+AGG | - | 42850:33212-33231 | MS.gene59297:CDS | 15.0% |
| !!! | GTTATTATATGTATTGATTA+GGG | - | 42850:32790-32809 | MS.gene59297:intron | 15.0% |
| !!! | TATAAGTAAGTTATTGATTA+TGG | - | 42850:31515-31534 | MS.gene59297:intron | 15.0% |
| !!! | TGTTATTATATGTATTGATT+AGG | - | 42850:32789-32808 | MS.gene59297:intron | 15.0% |
| !!! | TTTTAGAATAAAAGCAAAAA+TGG | - | 42850:32971-32990 | MS.gene59297:intron | 15.0% |
| !!! | TTTTTTATTTGTTTTTGACA+TGG | - | 42850:32218-32237 | MS.gene59297:intron | 15.0% |
| !! | AAATGTTCTGTTTAATGTAT+AGG | - | 42850:33380-33399 | MS.gene59297:intron | 20.0% |
| !! | ACAAGATCATTTAAATCAAA+TGG | + | 42850:34720-34739 | MS.gene59297:intergenic | 20.0% |
| !! | AGATTTGATAGAGAATTAAA+AGG | + | 42850:34118-34137 | MS.gene59297:intergenic | 20.0% |
| !! | AGCTGAAAATTATAATATTG+TGG | + | 42850:32484-32503 | MS.gene59297:intergenic | 20.0% |
| !! | ATATATAGTAAAAAGGGATT+AGG | + | 42850:32015-32034 | MS.gene59297:intergenic | 20.0% |
| !! | ATCATAAATTCCTATATAAG+AGG | + | 42850:32856-32875 | MS.gene59297:intergenic | 20.0% |
| !! | ATTCATTAAATGATGTATGT+AGG | + | 42850:31077-31058 | MS.gene59297:intergenic | 20.0% |
| !! | CACCTTTAACAAAAATAAAA+CGG | + | 42850:31804-31823 | MS.gene59297:intergenic | 20.0% |
| !! | TAAATTTACCTTCAACAAAA+GGG | + | 42850:34030-34049 | MS.gene59297:intergenic | 20.0% |
| !! | TAAGCAAAAATCAATATTCT+AGG | - | 42850:31032-31051 | MS.gene59297:intron | 20.0% |
| !! | TATATAGTAAAAAGGGATTA+GGG | + | 42850:32014-32033 | MS.gene59297:intergenic | 20.0% |
| !! | TATTGTGGAACTATAATATT+GGG | - | 42850:32193-32212 | MS.gene59297:intron | 20.0% |
| !!! | AACATATGACTTGAATTTTA+AGG | - | 42850:33597-33616 | MS.gene59297:intron | 20.0% |
| !!! | AACCGTTTTATTTTTGTTAA+AGG | - | 42850:31799-31818 | MS.gene59297:CDS | 20.0% |
| !!! | AGAAGTTCTTTTCTAATTTT+GGG | - | 42850:31924-31943 | MS.gene59297:intron | 20.0% |
| !!! | ATAAGATTCCAAATTTGTTT+TGG | - | 42850:32116-32135 | MS.gene59297:CDS | 20.0% |
| !!! | CAATATTATAATTTTCAGCT+TGG | - | 42850:32484-32503 | MS.gene59297:CDS | 20.0% |
| !!! | TAAGCAAAAATCAACATTTT+AGG | + | 42850:31121-31140 | MS.gene59297:intergenic | 20.0% |
| !!! | TAGAAGTTCTTTTCTAATTT+TGG | - | 42850:31923-31942 | MS.gene59297:intron | 20.0% |
| !!! | TTATTTTTTCCTGAATGAAT+TGG | - | 42850:32085-32104 | MS.gene59297:intron | 20.0% |
| !!! | TTTTGTTTTGTGAAATAGAA+AGG | - | 42850:30780-30799 | MS.gene59297:intron | 20.0% |
| ! | AAAGAAAATTCCTCTATACA+AGG | - | 42850:32561-32580 | MS.gene59297:intron | 25.0% |
| ! | AAATCTTGACATGAATTGTT+TGG | + | 42850:34467-34486 | MS.gene59297:intergenic | 25.0% |
| ! | AAATGAATGTTGAACTTGAA+GGG | - | 42850:31328-31347 | MS.gene59297:CDS | 25.0% |
| ! | AATAAAAATGGAGAAACTTC+AGG | + | 42850:33648-33667 | MS.gene59297:intergenic | 25.0% |
| ! | AATAATGTTAAAAACGCAAC+AGG | + | 42850:33948-33967 | MS.gene59297:intergenic | 25.0% |
| ! | AATGTATAGGAAAACAAAGA+AGG | - | 42850:33393-33412 | MS.gene59297:CDS | 25.0% |
| ! | ACCTTATTACAGAATAATGA+TGG | - | 42850:33689-33708 | MS.gene59297:intron | 25.0% |
| ! | ATAAAAGCAAAAATGGATGA+CGG | - | 42850:32978-32997 | MS.gene59297:intron | 25.0% |
| ! | CATTAGAAAACAGAACAAAA+CGG | + | 42850:34294-34313 | MS.gene59297:intergenic | 25.0% |
| ! | CTAAAACAAACATAAGTTAC+TGG | + | 42850:32047-32066 | MS.gene59297:intergenic | 25.0% |
| ! | GTAAATTTACCTTCAACAAA+AGG | + | 42850:34031-34050 | MS.gene59297:intergenic | 25.0% |
| ! | GTATTGTGGAACTATAATAT+TGG | - | 42850:32192-32211 | MS.gene59297:intron | 25.0% |
| ! | GTGAATGATTAGTGAAAAAT+TGG | - | 42850:30664-30683 | MS.gene59297:intron | 25.0% |
| ! | TAGTTCATTAAGAGTTAAGA+CGG | + | 42850:34094-34113 | MS.gene59297:intergenic | 25.0% |
| ! | TATCTGTATAGGTTGTAATT+GGG | - | 42850:33533-33552 | MS.gene59297:intron | 25.0% |
| ! | TCACGGAAAAGAAATAAAAA+TGG | + | 42850:33660-33679 | MS.gene59297:intergenic | 25.0% |
| ! | TCATTTAAATCAAATGGACA+TGG | + | 42850:34714-34733 | MS.gene59297:intergenic | 25.0% |
| ! | TCCATCATTATTCTGTAATA+AGG | + | 42850:33693-33712 | MS.gene59297:intergenic | 25.0% |
| ! | TGTTTCAAAAGGTAAATGAT+TGG | - | 42850:31170-31189 | MS.gene59297:CDS | 25.0% |
| ! | TTAACTAACATGTATATGAC+TGG | - | 42850:31365-31384 | MS.gene59297:CDS | 25.0% |
| ! | TTCTTTATAACCTATTTGGT+AGG | - | 42850:34148-34167 | MS.gene59297:intron | 25.0% |
| !! | AAAGTTAGTAAAGTACCTTT+GGG | + | 42850:33892-33911 | MS.gene59297:intergenic | 25.0% |
| !! | AGTAAGTTATTGATTATGGA+TGG | - | 42850:31519-31538 | MS.gene59297:intron | 25.0% |
| !! | CAGATACTGAGATTTTTAAA+AGG | + | 42850:31965-31984 | MS.gene59297:intergenic | 25.0% |
| !! | GACTGAAATTGACAATTTTA+TGG | - | 42850:32313-32332 | MS.gene59297:intron | 25.0% |
| !! | TCAGAATTTTACGATAACAA+GGG | - | 42850:33571-33590 | MS.gene59297:intron | 25.0% |
| !! | TTAATCCAGTTTTTATAGAG+TGG | - | 42850:32252-32271 | MS.gene59297:intron | 25.0% |
| !! | TTACATCTTGTTTATTGTAG+TGG | - | 42850:34342-34361 | MS.gene59297:intron | 25.0% |
| !! | TTCAGAATTTTACGATAACA+AGG | - | 42850:33570-33589 | MS.gene59297:intron | 25.0% |
| !! | TTTTTGCTTATAATAGTGAC+CGG | - | 42850:31131-31150 | MS.gene59297:intron | 25.0% |
| !! | TTTTTGCTTATAATAGTGAC+CGG | + | 42850:31150-31131 | MS.gene59297:intergenic | 25.0% |
| !!! | ACATGTGTAATGCATTTTTT+AGG | - | 42850:31457-31476 | MS.gene59297:intron | 25.0% |
| !!! | ATTTGAGGAATGTTTTGATT+TGG | - | 42850:30734-30753 | MS.gene59297:intron | 25.0% |
| !!! | ATTTTAGGAATCTTTGGATT+AGG | - | 42850:31254-31273 | MS.gene59297:intron | 25.0% |
| !!! | CAGTAACTTATGTTTGTTTT+AGG | - | 42850:32045-32064 | MS.gene59297:intron | 25.0% |
| !!! | GCTTTTATTCTAAAACAAGT+TGG | + | 42850:32966-32985 | MS.gene59297:intergenic | 25.0% |
| !!! | TCAAATCATGAACTACTTTT+AGG | + | 42850:33171-33190 | MS.gene59297:intergenic | 25.0% |
| !!! | TGATTAGTTTCTATCTGTAT+AGG | - | 42850:33522-33541 | MS.gene59297:intron | 25.0% |
| !!! | TGATTTGGTACATTTTTGTA+GGG | - | 42850:30749-30768 | MS.gene59297:intron | 25.0% |
| !!! | TTGATTTGGTACATTTTTGT+AGG | - | 42850:30748-30767 | MS.gene59297:intron | 25.0% |
| !!! | TTGTTGATTTTAGGAATCTT+TGG | - | 42850:31248-31267 | MS.gene59297:intron | 25.0% |
| AAAACCAAAAGAAGCAAGTA+AGG | + | 42850:33132-33151 | MS.gene59295:intergenic | 30.0% | |
| AATAAGGTAGTCAGTTATCA+CGG | + | 42850:33677-33696 | MS.gene59297:intergenic | 30.0% | |
| AATTTATGATTCTCCCTGTT+GGG | - | 42850:32866-32885 | MS.gene59297:CDS | 30.0% | |
| ATAATATTGCATATGCCTTG+GGG | - | 42850:34779-34798 | MS.gene59297:intron | 30.0% | |
| ATATGACTGGTGTACTATAT+AGG | - | 42850:31378-31397 | MS.gene59297:CDS | 30.0% | |
| ATGCTATGTCATTGTTTAAC+AGG | - | 42850:34538-34557 | MS.gene59297:intron | 30.0% | |
| ATTTGATTCACCTACCAAAT+AGG | + | 42850:34161-34180 | MS.gene59297:intergenic | 30.0% | |
| ATTTGGTAGGTGAATCAAAT+TGG | - | 42850:34161-34180 | MS.gene59297:intron | 30.0% | |
| CAGCTCAATTAACAAAGATA+AGG | + | 42850:34636-34655 | MS.gene59297:intergenic | 30.0% | |
| CATAATATTGCATATGCCTT+GGG | - | 42850:34778-34797 | MS.gene59297:intron | 30.0% | |
| CCTTCATTCAATGTTATCAA+CGG | - | 42850:32715-32734 | MS.gene59297:intron | 30.0% | |
| CTATCTGTATAGGTTGTAAT+TGG | - | 42850:33532-33551 | MS.gene59297:intron | 30.0% | |
| CTTTACTAACTTTCAGACTT+AGG | - | 42850:33899-33918 | MS.gene59297:intron | 30.0% | |
| GAAAATGTAATGAAGCAGAA+AGG | + | 42850:33329-33348 | MS.gene59297:intergenic | 30.0% | |
| GAAATGAATGTTGAACTTGA+AGG | - | 42850:31327-31346 | MS.gene59297:CDS | 30.0% | |
| GCTGTGATTAAAAAGAAGTA+TGG | - | 42850:33052-33071 | MS.gene59297:CDS | 30.0% | |
| TAAAAGCAAAAATGGATGAC+GGG | - | 42850:32979-32998 | MS.gene59297:intron | 30.0% | |
| TCAGTCATACATGTATATTC+AGG | + | 42850:33505-33524 | MS.gene59297:intergenic | 30.0% | |
| TCATAATATTGCATATGCCT+TGG | - | 42850:34777-34796 | MS.gene59297:intron | 30.0% | |
| TGCTATGTCATTGTTTAACA+GGG | - | 42850:34539-34558 | MS.gene59297:intron | 30.0% | |
| TTCAAAGAAGCAATGAAGAT+GGG | - | 42850:32898-32917 | MS.gene59297:intron | 30.0% | |
| TTTCAAAGAAGCAATGAAGA+TGG | - | 42850:32897-32916 | MS.gene59297:intron | 30.0% | |
| TTTGTTAATTGAGCTGTATG+CGG | - | 42850:34640-34659 | MS.gene59297:intron | 30.0% | |
| ! | AACAAAGATAAGGAGTTTTG+TGG | + | 42850:34626-34645 | MS.gene59297:intergenic | 30.0% |
| ! | ATTTGATTTCTCGCAATTAG+TGG | - | 42850:33185-33204 | MS.gene59297:intron | 30.0% |
| ! | CTAAAACAAGTTGGACAAAA+AGG | + | 42850:32957-32976 | MS.gene59297:intergenic | 30.0% |
| ! | GAAAGTTAGTAAAGTACCTT+TGG | + | 42850:33893-33912 | MS.gene59297:intergenic | 30.0% |
| !! | TATGTTTTTGCATAGACATG+TGG | - | 42850:30888-30907 | MS.gene59297:intron | 30.0% |
| !! | TCTAATTTTGGGAAGAATGA+TGG | - | 42850:31935-31954 | MS.gene59297:intron | 30.0% |
| !! | TGACTTGAATTTTAAGGAAG+AGG | - | 42850:33603-33622 | MS.gene59297:intron | 30.0% |
| !!! | AGTTGTTTTATTTGCCTTAC+AGG | - | 42850:33030-33049 | MS.gene59297:CDS | 30.0% |
| !!! | TGTGCTTGTTTGTTGATTTT+AGG | - | 42850:31239-31258 | MS.gene59297:intron | 30.0% |
| !!! | TTCCAAATTTGTTTTGGCTT+AGG | - | 42850:32122-32141 | MS.gene59297:CDS | 30.0% |
| AGCCTAAGCCAAAACAAATT+TGG | + | 42850:32127-32146 | MS.gene59297:intergenic | 35.0% | |
| ATGTCAAATTGATTGCACGT+TGG | - | 42850:31634-31653 | MS.gene59297:intron | 35.0% | |
| ATTCCTATATAAGAGGCAGA+AGG | + | 42850:32849-32868 | MS.gene59297:intergenic | 35.0% | |
| ATTGCTAAAGCTGGTTATAC+TGG | - | 42850:33438-33457 | MS.gene59297:intron | 35.0% | |
| ATTGTCAATTTCAGTCTGCT+TGG | + | 42850:32309-32328 | MS.gene59297:intergenic | 35.0% | |
| ATTTATGATTCTCCCTGTTG+GGG | - | 42850:32867-32886 | MS.gene59297:CDS | 35.0% | |
| CTGTTGAAGCTTACAAGATT+TGG | - | 42850:34513-34532 | MS.gene59297:intron | 35.0% | |
| GAATTTATGATTCTCCCTGT+TGG | - | 42850:32865-32884 | MS.gene59297:CDS | 35.0% | |
| GCAAAACTAACAGCTGAAAT+GGG | - | 42850:33824-33843 | MS.gene59297:intron | 35.0% | |
| GCATAACTAGCTATTGAAGT+GGG | + | 42850:34667-34686 | MS.gene59297:intergenic | 35.0% | |
| GGAACTGATTGGAAAAACAA+TGG | + | 42850:34273-34292 | MS.gene59297:intergenic | 35.0% | |
| GGAGACTGTAATAGACTAAT+AGG | - | 42850:32433-32452 | MS.gene59297:intron | 35.0% | |
| GTTGATGTTACTCTTAGTGA+TGG | - | 42850:30600-30619 | MS.gene59297:CDS | 35.0% | |
| TAAAGCTGGTTATACTGGAA+AGG | - | 42850:33443-33462 | MS.gene59297:intron | 35.0% | |
| TATCCTTCTGCCTCTTATAT+AGG | - | 42850:32843-32862 | MS.gene59297:CDS | 35.0% | |
| TCAACTGTTTGTGTGATTTG+AGG | - | 42850:30719-30738 | MS.gene59297:intron | 35.0% | |
| TCATTCAATGTTATCAACGG+AGG | - | 42850:32718-32737 | MS.gene59297:intron | 35.0% | |
| TGATGGAACTGTTAATGAGT+GGG | - | 42850:32346-32365 | MS.gene59297:intron | 35.0% | |
| TGCAAAACTAACAGCTGAAA+TGG | - | 42850:33823-33842 | MS.gene59297:intron | 35.0% | |
| TGTATAGGTTGTAATTGGGA+TGG | - | 42850:33537-33556 | MS.gene59297:intron | 35.0% | |
| TTATCAGCTCCAATTCATTC+AGG | + | 42850:32097-32116 | MS.gene59297:intergenic | 35.0% | |
| TTATTGTAGTGGTGAAACTG+AGG | - | 42850:34353-34372 | MS.gene59297:intron | 35.0% | |
| TTGATGGAACTGTTAATGAG+TGG | - | 42850:32345-32364 | MS.gene59297:intron | 35.0% | |
| ! | AGAAGTATACCATCATCTGA+AGG | - | 42850:32924-32943 | MS.gene59297:intron | 35.0% |
| ! | AGTATAACCAGCTTTAGCAA+TGG | + | 42850:33439-33458 | MS.gene59297:intergenic | 35.0% |
| ! | ATAACATTGAATGAAGGCAC+AGG | + | 42850:32712-32731 | MS.gene59297:intergenic | 35.0% |
| ! | CATGTCAAGATTTTGTAGCT+TGG | - | 42850:34474-34493 | MS.gene59297:intron | 35.0% |
| ! | CTGAGCTTCATAGCTTTTAT+TGG | - | 42850:31745-31764 | MS.gene59297:CDS | 35.0% |
| ! | CTTTTTAATCACAGCCTGTA+AGG | + | 42850:33047-33066 | MS.gene59297:intergenic | 35.0% |
| ! | GCTCTATGTGGATTTAAGTT+AGG | - | 42850:34843-34862 | MS.gene59297:intron | 35.0% |
| ! | GGCATTCAATTTTTGCTGAT+TGG | - | 42850:32454-32473 | MS.gene59297:CDS | 35.0% |
| ! | GTAGGCTTTTGTGTTTCAAA+AGG | - | 42850:31159-31178 | MS.gene59297:intron | 35.0% |
| ! | TTAGTAAAGTACCTTTGGGT+TGG | + | 42850:33888-33907 | MS.gene59297:intergenic | 35.0% |
| ! | TTATTCTTTTATTGGCCCCA+AGG | + | 42850:34797-34816 | MS.gene59297:intergenic | 35.0% |
| !! | AACTACTTTTAGGTAGCACT+TGG | + | 42850:33161-33180 | MS.gene59297:intergenic | 35.0% |
| !! | CCGTTGATAACATTGAATGA+AGG | + | 42850:32718-32737 | MS.gene59297:intergenic | 35.0% |
| !! | GAGTTTGTATCTGCTTTTAC+AGG | - | 42850:32277-32296 | MS.gene59297:intron | 35.0% |
| !!! | ATTTTTTGCAGCTGCGTTTA+TGG | - | 42850:32412-32431 | MS.gene59297:intron | 35.0% |
| !!! | GAAGTTGATGTGATGTTTTG+TGG | - | 42850:30809-30828 | MS.gene59297:intron | 35.0% |
| !!! | TGGATTAGGTACGTTTTTTG+TGG | - | 42850:31268-31287 | MS.gene59297:intron | 35.0% |
| AAAAGAAGCAAGTAAGGACC+TGG | + | 42850:33126-33145 | MS.gene59295:intergenic | 40.0% | |
| AACTGAGAGATCAGCAATGA+AGG | + | 42850:34382-34401 | MS.gene59295:intergenic | 40.0% | |
| ACCTCACATACCTTGTATAG+AGG | + | 42850:32574-32593 | MS.gene59297:intergenic | 40.0% | |
| AGGAAATAAGCTTGCAATGC+AGG | - | 42850:32750-32769 | MS.gene59297:intron | 40.0% | |
| ATTATAGCACCTGCTCTTCT+TGG | - | 42850:32165-32184 | MS.gene59297:intron | 40.0% | |
| CAAGTAAGGACCTGGATATT+AGG | + | 42850:33118-33137 | MS.gene59297:intergenic | 40.0% | |
| CAATGGACGTTCAATACCTT+CGG | + | 42850:34256-34275 | MS.gene59297:intergenic | 40.0% | |
| CAATTTCAGTCTGCTTGGTT+GGG | + | 42850:32304-32323 | MS.gene59297:intergenic | 40.0% | |
| CACATGTGTCAATGTTGCAT+TGG | + | 42850:31444-31463 | MS.gene59297:intergenic | 40.0% | |
| CAGAACAAAACGGAACTGAT+TGG | + | 42850:34284-34303 | MS.gene59297:intergenic | 40.0% | |
| CAGCATATTGCAAATCTAGC+TGG | - | 42850:32667-32686 | MS.gene59297:CDS | 40.0% | |
| CTCAGCCACTCTATAAAAAC+TGG | + | 42850:32260-32279 | MS.gene59297:intergenic | 40.0% | |
| CTCTGTACGTAGACACTAAT+GGG | - | 42850:34319-34338 | MS.gene59297:intron | 40.0% | |
| CTTGTAAGCTTCAACAGAGA+AGG | + | 42850:34510-34529 | MS.gene59297:intergenic | 40.0% | |
| GAGGCAGAAGGATAAGAATT+TGG | + | 42850:32837-32856 | MS.gene59297:intergenic | 40.0% | |
| GATGGAACTGTTAATGAGTG+GGG | - | 42850:32347-32366 | MS.gene59297:intron | 40.0% | |
| GATGGATCAGAGAAAATCTC+AGG | - | 42850:33707-33726 | MS.gene59297:CDS | 40.0% | |
| GCGTGTGGAAAAAGCAATTA+AGG | - | 42850:33989-34008 | MS.gene59297:intron | 40.0% | |
| GGACATTAACCTTCAGATGA+TGG | + | 42850:32936-32955 | MS.gene59297:intergenic | 40.0% | |
| GGCATAACTAGCTATTGAAG+TGG | + | 42850:34668-34687 | MS.gene59297:intergenic | 40.0% | |
| TCAATTTCAGTCTGCTTGGT+TGG | + | 42850:32305-32324 | MS.gene59297:intergenic | 40.0% | |
| TCATTGCTGATCTCTCAGTT+GGG | - | 42850:34382-34401 | MS.gene59297:intron | 40.0% | |
| TCCTCTATACAAGGTATGTG+AGG | - | 42850:32570-32589 | MS.gene59297:intron | 40.0% | |
| TCTAGCTGGAAACAAGACTT+TGG | - | 42850:32681-32700 | MS.gene59297:CDS | 40.0% | |
| TCTCTGTACGTAGACACTAA+TGG | - | 42850:34318-34337 | MS.gene59297:intron | 40.0% | |
| TCTGATGCAAAACTGACATG+TGG | - | 42850:31664-31683 | MS.gene59297:intron | 40.0% | |
| TGCTTATAATAGTGACCGGA+GGG | - | 42850:31135-31154 | MS.gene59297:intron | 40.0% | |
| TGCTTATAATAGTGACCGGA+GGG | + | 42850:31154-31135 | MS.gene59297:intergenic | 40.0% | |
| TTAACAGGGTCAGATCAAGA+CGG | - | 42850:34553-34572 | MS.gene59297:intron | 40.0% | |
| TTCATTGCTGATCTCTCAGT+TGG | - | 42850:34381-34400 | MS.gene59297:intron | 40.0% | |
| TTGCTTATAATAGTGACCGG+AGG | - | 42850:31134-31153 | MS.gene59297:intron | 40.0% | |
| TTGCTTATAATAGTGACCGG+AGG | + | 42850:31153-31134 | MS.gene59297:intergenic | 40.0% | |
| TTTATGGTACAGCAGCTTGA+TGG | - | 42850:32329-32348 | MS.gene59297:intron | 40.0% | |
| ! | AGGTCCTTACTTGCTTCTTT+TGG | - | 42850:33125-33144 | MS.gene59297:intron | 40.0% |
| ! | GCATGACTTGTGTACTATGT+AGG | - | 42850:31605-31624 | MS.gene59297:intron | 40.0% |
| ! | GTGATGTAGATAGCTCTATG+TGG | - | 42850:34831-34850 | MS.gene59297:intron | 40.0% |
| ! | TTGCAATGCCCTTTTGTTGA+AGG | - | 42850:34019-34038 | MS.gene59297:intron | 40.0% |
| !! | AGGAGTTTTGTGGTTTTACC+TGG | + | 42850:34616-34635 | MS.gene59297:intergenic | 40.0% |
| !! | ATTATTGGTTCCTTAGCGTG+TGG | - | 42850:33974-33993 | MS.gene59297:intron | 40.0% |
| !! | CTATGAAGCTCTGGAATTGA+GGG | - | 42850:31825-31844 | MS.gene59297:CDS | 40.0% |
| !! | CTATGCTGGTTCCAAATTCA+GGG | - | 42850:34938-34957 | MS.gene59297:CDS | 40.0% |
| !! | TAAAGGTGTCTATGAAGCTC+TGG | - | 42850:31816-31835 | MS.gene59297:CDS | 40.0% |
| !! | TCTATGAAGCTCTGGAATTG+AGG | - | 42850:31824-31843 | MS.gene59297:CDS | 40.0% |
| !! | TCTATGCTGGTTCCAAATTC+AGG | - | 42850:34937-34956 | MS.gene59297:CDS | 40.0% |
| !!! | ATTGCTTTTTCCACACGCTA+AGG | + | 42850:33987-34006 | MS.gene59297:intergenic | 40.0% |
| AAGACTGCCATTGCTAAAGC+TGG | - | 42850:33429-33448 | MS.gene59297:intron | 45.0% | |
| AATACCTTGCCAAGAAGAGC+AGG | + | 42850:32177-32196 | MS.gene59297:intergenic | 45.0% | |
| AATGTCTAAGCAAGCTGGCT+GGG | - | 42850:34214-34233 | MS.gene59297:intron | 45.0% | |
| ACTAATGTGGGTGATGAAGG+TGG | - | 42850:33085-33104 | MS.gene59297:intron | 45.0% | |
| AGCAGAAAGGAGAGTAGAGA+TGG | + | 42850:33316-33335 | MS.gene59297:intergenic | 45.0% | |
| AGCTGCAACACAGATCAAAG+AGG | + | 42850:34882-34901 | MS.gene59297:intergenic | 45.0% | |
| ATCCATTCGATCAGGATGAC+TGG | - | 42850:33792-33811 | MS.gene59297:intron | 45.0% | |
| CATTGAGGATCCATTCGATC+AGG | - | 42850:33784-33803 | MS.gene59297:intron | 45.0% | |
| CTGATCGAATGGATCCTCAA+TGG | + | 42850:33786-33805 | MS.gene59297:intergenic | 45.0% | |
| GAACTGTTAATGAGTGGGGA+TGG | - | 42850:32351-32370 | MS.gene59297:intron | 45.0% | |
| GAACTTGAAGGGATGCATTG+TGG | - | 42850:31339-31358 | MS.gene59297:CDS | 45.0% | |
| GATCCTCAATGGACACGATT+GGG | + | 42850:33775-33794 | MS.gene59297:intergenic | 45.0% | |
| GATCTGTGTTGCAGCTTCTT+AGG | - | 42850:34886-34905 | MS.gene59297:intron | 45.0% | |
| GCTACTAATGTGGGTGATGA+AGG | - | 42850:33082-33101 | MS.gene59297:intron | 45.0% | |
| GGACAAGACGCTACTAATGT+GGG | - | 42850:33073-33092 | MS.gene59297:intron | 45.0% | |
| GGTCAGCAAGTACAGATAGT+TGG | - | 42850:33845-33864 | MS.gene59297:intron | 45.0% | |
| GTGAGAATGTCTAAGCAAGC+TGG | - | 42850:34209-34228 | MS.gene59297:intron | 45.0% | |
| GTTGCAGCTTCTTAGGATTG+AGG | - | 42850:34893-34912 | MS.gene59297:intron | 45.0% | |
| TAACAGGGTCAGATCAAGAC+GGG | - | 42850:34554-34573 | MS.gene59297:intron | 45.0% | |
| TCCATTCGATCAGGATGACT+GGG | - | 42850:33793-33812 | MS.gene59297:intron | 45.0% | |
| TCTCCTTGTTACCAACCCAA+AGG | - | 42850:33874-33893 | MS.gene59297:intron | 45.0% | |
| TGAAAGAAGATGCCCCAACA+GGG | + | 42850:32882-32901 | MS.gene59297:intergenic | 45.0% | |
| TGACACGGCCAAAATAGCAT+TGG | + | 42850:32512-32531 | MS.gene59297:intergenic | 45.0% | |
| TGGACAAGACGCTACTAATG+TGG | - | 42850:33072-33091 | MS.gene59297:intron | 45.0% | |
| TTACCCAATCGTGTCCATTG+AGG | - | 42850:33769-33788 | MS.gene59297:intron | 45.0% | |
| TTGAAAGAAGATGCCCCAAC+AGG | + | 42850:32883-32902 | MS.gene59297:intergenic | 45.0% | |
| TTTACAGACAGCGAGTGACA+CGG | + | 42850:32527-32546 | MS.gene59297:intergenic | 45.0% | |
| ! | ATGTTGCATTGGCCACATGT+CGG | + | 42850:31433-31452 | MS.gene59297:intergenic | 45.0% |
| ! | TGGCTTTGCTCCTAATATCC+AGG | - | 42850:33105-33124 | MS.gene59297:intron | 45.0% |
| ! | TGTGTTCTCATGGATTGCTG+TGG | - | 42850:32625-32644 | MS.gene59297:intron | 45.0% |
| !! | CTCGTTAGCTTGTGTTCTCA+TGG | - | 42850:32615-32634 | MS.gene59297:intron | 45.0% |
| !! | CTCTTCTTGGCAAGGTATTG+TGG | - | 42850:32178-32197 | MS.gene59297:intron | 45.0% |
| !! | GCTTGGAGCCAATGCTATTT+TGG | - | 42850:32501-32520 | MS.gene59297:CDS | 45.0% |
| !! | GTACCTTTGGGTTGGTAACA+AGG | + | 42850:33880-33899 | MS.gene59297:intergenic | 45.0% |
| ACACAAAAGCCTACACCCTC+CGG | + | 42850:31153-31172 | MS.gene59297:intergenic | 50.0% | |
| ATGTCTAAGCAAGCTGGCTG+GGG | - | 42850:34215-34234 | MS.gene59297:intron | 50.0% | |
| CCTTAAGAACACCTTTCCCG+AGG | + | 42850:31867-31886 | MS.gene59297:intergenic | 50.0% | |
| CGCAACAGGATACATGTCTG+TGG | + | 42850:33934-33953 | MS.gene59297:intergenic | 50.0% | |
| CTTAGGATTGAGGAGGAGCT+TGG | - | 42850:34903-34922 | MS.gene59297:intron | 50.0% | |
| GAATGTCTAAGCAAGCTGGC+TGG | - | 42850:34213-34232 | MS.gene59297:intron | 50.0% | |
| GCAGCTTCTTAGGATTGAGG+AGG | - | 42850:34896-34915 | MS.gene59297:intron | 50.0% | |
| GGATCCTCAATGGACACGAT+TGG | + | 42850:33776-33795 | MS.gene59297:intergenic | 50.0% | |
| GTCTTGCTTCATACACCCTC+CGG | - | 42850:31000-31019 | MS.gene59297:CDS | 50.0% | |
| GTTCCTAGTGGTGCTTCAAC+AGG | - | 42850:30642-30661 | MS.gene59297:CDS | 50.0% | |
| TCACTCGCTGTCTGTAAAGC+TGG | - | 42850:32529-32548 | MS.gene59297:intron | 50.0% | |
| TCCCAGTCATCCTGATCGAA+TGG | + | 42850:33797-33816 | MS.gene59297:intergenic | 50.0% | |
| TGGACGTTCAATACCTTCGG+TGG | + | 42850:34253-34272 | MS.gene59297:intergenic | 50.0% | |
| TTGAATGTGCGTCCGACATG+TGG | - | 42850:31418-31437 | MS.gene59297:intron | 50.0% | |
| ! | TAATAGTGACCGGAGGGTGT+AGG | - | 42850:31141-31160 | MS.gene59297:intron | 50.0% |
| ! | TCACCTGTTGAAGCACCACT+AGG | + | 42850:30648-30667 | MS.gene59297:intergenic | 50.0% |
| !! | CCTCGGGAAAGGTGTTCTTA+AGG | - | 42850:31864-31883 | MS.gene59297:intron | 50.0% |
| !! | GAAGCTCTGGAATTGAGGGA+TGG | - | 42850:31829-31848 | MS.gene59297:CDS | 50.0% |
| AGCACCTGCTCTTCTTGGCA+AGG | - | 42850:32170-32189 | MS.gene59297:intron | 55.0% | |
| ATCAACGGAGGCTCACATGC+AGG | - | 42850:32730-32749 | MS.gene59297:intron | 55.0% | |
| ATGGAGGCTCAGACTACCTC+GGG | - | 42850:31848-31867 | MS.gene59297:CDS | 55.0% | |
| GAGCTCCCTGCAGATCTGAA+AGG | - | 42850:34576-34595 | MS.gene59297:intron | 55.0% | |
| GATGGAGGCTCAGACTACCT+CGG | - | 42850:31847-31866 | MS.gene59297:CDS | 55.0% | |
| GCTAGAGCTGCTGTTCCTAG+TGG | - | 42850:30630-30649 | MS.gene59297:CDS | 55.0% | |
| TTCCAAATTCAGGGCCCCAG+TGG | - | 42850:34947-34966 | MS.gene59297:CDS | 55.0% | |
| !! | GCTCTGGAATTGAGGGATGG+AGG | - | 42850:31832-31851 | MS.gene59297:CDS | 55.0% |
| CTCCACTGGGGCCCTGAATT+TGG | + | 42850:34952-34971 | MS.gene59297:intergenic | 60.0% | |
| GGCTCAGACTACCTCGGGAA+AGG | - | 42850:31853-31872 | MS.gene59297:CDS | 60.0% | |
| GTGGGGATGGTGCAAGCAGA+AGG | - | 42850:32364-32383 | MS.gene59297:intron | 60.0% | |
| ! | GGTGCTGCAGCAGTCTATGC+TGG | - | 42850:34924-34943 | MS.gene59297:CDS | 60.0% |
| ! | GTGTCATGGCTAGCCACCGA+AGG | - | 42850:34237-34256 | MS.gene59297:intron | 60.0% |
| ! | GCAAGCTGGCTGGGGTGTCA+TGG | - | 42850:34223-34242 | MS.gene59297:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| 42850 | gene | 30600 | 34980 | 30600 | ID=MS.gene59297 |
| 42850 | mRNA | 30600 | 34980 | 30600 | ID=MS.gene59297.t1;Parent=MS.gene59297 |
| 42850 | exon | 34917 | 34980 | 34917 | ID=MS.gene59297.t1.exon1;Parent=MS.gene59297.t1 |
| 42850 | CDS | 34917 | 34980 | 34917 | ID=cds.MS.gene59297.t1;Parent=MS.gene59297.t1 |
| 42850 | exon | 33695 | 33759 | 33695 | ID=MS.gene59297.t1.exon2;Parent=MS.gene59297.t1 |
| 42850 | CDS | 33695 | 33759 | 33695 | ID=cds.MS.gene59297.t1;Parent=MS.gene59297.t1 |
| 42850 | exon | 33389 | 33436 | 33389 | ID=MS.gene59297.t1.exon3;Parent=MS.gene59297.t1 |
| 42850 | CDS | 33389 | 33436 | 33389 | ID=cds.MS.gene59297.t1;Parent=MS.gene59297.t1 |
| 42850 | exon | 33195 | 33281 | 33195 | ID=MS.gene59297.t1.exon4;Parent=MS.gene59297.t1 |
| 42850 | CDS | 33195 | 33281 | 33195 | ID=cds.MS.gene59297.t1;Parent=MS.gene59297.t1 |
| 42850 | exon | 32998 | 33078 | 32998 | ID=MS.gene59297.t1.exon5;Parent=MS.gene59297.t1 |
| 42850 | CDS | 32998 | 33078 | 32998 | ID=cds.MS.gene59297.t1;Parent=MS.gene59297.t1 |
| 42850 | exon | 32809 | 32910 | 32809 | ID=MS.gene59297.t1.exon6;Parent=MS.gene59297.t1 |
| 42850 | CDS | 32809 | 32910 | 32809 | ID=cds.MS.gene59297.t1;Parent=MS.gene59297.t1 |
| 42850 | exon | 32635 | 32715 | 32635 | ID=MS.gene59297.t1.exon7;Parent=MS.gene59297.t1 |
| 42850 | CDS | 32635 | 32715 | 32635 | ID=cds.MS.gene59297.t1;Parent=MS.gene59297.t1 |
| 42850 | exon | 32454 | 32528 | 32454 | ID=MS.gene59297.t1.exon8;Parent=MS.gene59297.t1 |
| 42850 | CDS | 32454 | 32528 | 32454 | ID=cds.MS.gene59297.t1;Parent=MS.gene59297.t1 |
| 42850 | exon | 32116 | 32178 | 32116 | ID=MS.gene59297.t1.exon9;Parent=MS.gene59297.t1 |
| 42850 | CDS | 32116 | 32178 | 32116 | ID=cds.MS.gene59297.t1;Parent=MS.gene59297.t1 |
| 42850 | exon | 31956 | 32036 | 31956 | ID=MS.gene59297.t1.exon10;Parent=MS.gene59297.t1 |
| 42850 | CDS | 31956 | 32036 | 31956 | ID=cds.MS.gene59297.t1;Parent=MS.gene59297.t1 |
| 42850 | exon | 31685 | 31879 | 31685 | ID=MS.gene59297.t1.exon11;Parent=MS.gene59297.t1 |
| 42850 | CDS | 31685 | 31879 | 31685 | ID=cds.MS.gene59297.t1;Parent=MS.gene59297.t1 |
| 42850 | exon | 31540 | 31590 | 31540 | ID=MS.gene59297.t1.exon12;Parent=MS.gene59297.t1 |
| 42850 | CDS | 31540 | 31590 | 31540 | ID=cds.MS.gene59297.t1;Parent=MS.gene59297.t1 |
| 42850 | exon | 31322 | 31410 | 31322 | ID=MS.gene59297.t1.exon13;Parent=MS.gene59297.t1 |
| 42850 | CDS | 31322 | 31410 | 31322 | ID=cds.MS.gene59297.t1;Parent=MS.gene59297.t1 |
| 42850 | exon | 31167 | 31218 | 31167 | ID=MS.gene59297.t1.exon14;Parent=MS.gene59297.t1 |
| 42850 | CDS | 31167 | 31218 | 31167 | ID=cds.MS.gene59297.t1;Parent=MS.gene59297.t1 |
| 42850 | exon | 30964 | 31020 | 30964 | ID=MS.gene59297.t1.exon15;Parent=MS.gene59297.t1 |
| 42850 | CDS | 30964 | 31020 | 30964 | ID=cds.MS.gene59297.t1;Parent=MS.gene59297.t1 |
| 42850 | exon | 30600 | 30680 | 30600 | ID=MS.gene59297.t1.exon16;Parent=MS.gene59297.t1 |
| 42850 | CDS | 30600 | 30680 | 30600 | ID=cds.MS.gene59297.t1;Parent=MS.gene59297.t1 |
| Gene Sequence |
| Protein sequence |
